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{{f5samples
{{f5samples
|DRA_sample_Accession=CAGE@SAMD00005292
|accession_numbers=CAGE;DRX008284;DRR009156;DRZ000581;DRZ001966;DRZ011931;DRZ013316
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0002097,UBERON:0002199,UBERON:0002384,UBERON:0000479,UBERON:0000062,UBERON:0000061,UBERON:0000465,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0003102,UBERON:0002416
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0002097,UBERON:0002199,UBERON:0002384,UBERON:0000479,UBERON:0000062,UBERON:0000061,UBERON:0000465,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0003102,UBERON:0002416
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0002320,CL:0002371,CL:0000255,CL:0000057,CL:0002620
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0002320,CL:0002371,CL:0000255,CL:0000057,CL:0002620
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|created_by=
|created_by=
|creation_date=
|creation_date=
|datafreeze_phase=1
|data_phase=2
|datafreeze_phase=2
|def=
|def=
|expression_enrichment_score=chr1:197886461..197886558,+!p1@LHX9!2.85!709.65!LHX9;;chr12:54410664..54410684,+!p1@HOXC4,p1@HOXC5,p1@HOXC6!1.78!58.94!HOXC5;;chr4:174451370..174451387,-!p1@HAND2!1.75!54.88!HAND2;;chr1:170632285..170632309,+!p1@PRRX1!1.72!58.51!PRRX1;;chr7:19157248..19157268,-!p1@TWIST1!1.68!125.36!TWIST1;;chr4:174450089..174450153,-!p2@HAND2!1.62!40.36!HAND2;;chr11:46299199..46299233,+!p1@CREB3L1!1.61!196.90!CREB3L1;;chr1:197886421..197886432,+!p2@LHX9!1.58!37.37!LHX9;;chr15:57511609..57511651,+!p2@TCF12!1.52!52.96!TCF12;;chr10:119303078..119303169,+!p2@EMX2!1.52!32.03!EMX2;;chr5:72744594..72744609,-!p1@FOXD1!1.49!131.12!FOXD1;;chr9:132427883..132427951,+!p2@PRRX2!1.46!27.98!PRRX2;;chr10:28034739..28034756,-!p1@MKX!1.45!27.34!MKX;;chr1:170633348..170633399,+!p2@PRRX1!1.44!35.88!PRRX1;;chr9:132427972..132428056,+!p1@PRRX2!1.42!32.67!PRRX2;;chr8:93074803..93074845,-!p1@RUNX1T1!1.37!22.42!RUNX1T1;;chrX:2418949..2419024,-!p1@DHRSX,p1@ZBED1!1.35!21.36!ZBED1;;chr2:239756671..239756732,+!p1@TWIST2!1.31!61.93!TWIST2;;chr2:239756739..239756755,+!p2@TWIST2!1.30!32.03!TWIST2;;chr2:176973498..176973524,+!p1@HOXD10!1.28!17.94!HOXD10;;chr10:119302232..119302265,+!p1@EMX2!1.21!15.38!EMX2;;chr2:119605214..119605230,-!p1@EN1!1.20!14.74!EN1;;chr5:2751762..2751784,-!p1@IRX2!1.19!14.52!IRX2;;chr19:13134772..13134822,+!p2@NFIX!1.18!20.93!NFIX;;chr1:197886665..197886732,+!p3@LHX9!1.18!14.09!LHX9;;chr3:157823517..157823562,-!p1@SHOX2!1.17!14.95!SHOX2;;chr2:19558373..19558392,-!p1@OSR1!1.16!36.73!OSR1;;chr10:63809013..63809041,+!p3@ARID5B!1.13!69.41!ARID5B;;chrX:591524..591527,+!p1@SHOX!1.13!12.60!SHOX;;chr2:176994408..176994492,+!p1@HOXD8!1.13!12.39!HOXD8;;chr12:54402745..54402788,+!p1@HOXC8!1.11!11.75!HOXC8;;chr7:44143925..44143970,+!p1@AEBP1!1.08!243.88!AEBP1;;chr12:54410639..54410659,+!p2@HOXC4,p2@HOXC5,p2@HOXC6!1.08!11.10!HOXC5;;chr20:55204351..55204377,+!p1@TFAP2C!1.07!13.88!TFAP2C;;chr11:44331576..44331650,-!p1@ALX4!1.07!10.68!ALX4;;chr18:53068911..53068935,-!p4@TCF4!1.06!11.96!TCF4;;chr11:46299539..46299620,+!p2@CREB3L1!1.05!17.30!CREB3L1;;chr5:72744445..72744466,-!p2@FOXD1!1.03!16.23!FOXD1;;chr8:93074848..93074871,-!p3@RUNX1T1!1.03!9.82!RUNX1T1;;chr2:176969097..176969109,+!p3@HOXD11!1.03!9.82!HOXD11;;chr7:27205136..27205164,-!p1@HOXA9!1.03!9.61!HOXA9;;chr1:170632959..170632987,+!p4@PRRX1!1.02!10.46!PRRX1;;chr1:170633262..170633285,+!p3@PRRX1!0.97!9.61!PRRX1;;chr2:176969228..176969260,+!p1@HOXD11!0.97!8.33!HOXD11;;chr4:174451350..174451363,-!p3@HAND2!0.96!8.12!HAND2;;chr3:147111231..147111281,+!p3@ZIC1!0.95!7.90!ZIC1;;chr1:170632477..170632506,+!p6@PRRX1!0.95!7.90!PRRX1;;chr7:27224795..27224840,-!p2@HOXA11!0.95!7.90!HOXA11;;chr7:27213893..27213954,-!p1@HOXA10!0.94!7.69!HOXA10;;chr7:27224842..27224872,-!p1@HOXA11!0.93!7.47!HOXA11;;chr1:170632115..170632136,+!p9@PRRX1!0.93!7.47!PRRX1;;chr6:19837592..19837621,+!p1@ID4!0.92!46.98!ID4;;chr14:24837368..24837401,+!p1@NFATC4!0.92!17.94!NFATC4;;chr6:85474299..85474324,-!p1@TBX18!0.92!13.45!TBX18;;chr6:10415276..10415341,-!p2@TFAP2A!0.92!8.97!TFAP2A;;chr15:83953397..83953425,-!p1@BNC1!0.92!8.54!BNC1;;chr1:54204818..54204870,-!p@chr1:54204818..54204870,-!0.90!7.47!GLIS1;;chr1:170632250..170632277,+!p7@PRRX1!0.89!6.83!PRRX1;;chr2:96012397..96012417,+!p3@KCNIP3!0.88!6.62!KCNIP3;;chr2:176969179..176969226,+!p2@HOXD11!0.86!6.19!HOXD11;;chr8:116673894..116673913,-!p12@TRPS1!0.86!6.19!TRPS1;;chr10:63809106..63809127,+!p1@ARID5B!0.85!87.77!ARID5B;;chr12:80085061..80085119,-!p6@PAWR!0.85!10.04!PAWR;;chr3:141121847..141121868,+!p5@ZBTB38!0.85!9.61!ZBTB38;;chr7:44143978..44143989,+!p2@AEBP1!0.84!11.32!AEBP1;;chr2:119604456..119604501,-!p2@EN1!0.84!5.98!EN1;;chr1:170632137..170632172,+!p10@PRRX1!0.84!5.98!PRRX1;;chr14:75894714..75894733,+!p1@JDP2!0.83!173.84!JDP2;;chr6:10412600..10412637,-!p1@TFAP2A!0.83!10.04!TFAP2A;;chr3:147111198..147111225,+!p4@ZIC1!0.83!5.77!ZIC1;;chr12:53614115..53614154,-!p1@RARG!0.82!32.03!RARG;;chr5:72744562..72744573,-!p3@FOXD1!0.82!7.05!FOXD1;;chr6:134210243..134210257,+!p1@TCF21!0.82!5.55!TCF21;;chr16:31076332..31076388,-!p3@ZNF668!0.82!5.55!ZNF668;;chr1:170632439..170632465,+!p11@PRRX1!0.82!5.55!PRRX1;;chr8:49833978..49833996,-!p1@SNAI2!0.80!119.38!SNAI2;;chr5:321810..321877,+!p1@AHRR!0.80!18.15!AHRR;;chr7:27205106..27205134,-!p2@HOXA9!0.80!5.34!HOXA9;;chr1:119530493..119530572,-!p1@TBX15!0.80!5.34!TBX15;;chr2:95963052..95963106,+!p1@KCNIP3!0.80!5.34!KCNIP3;;chr8:49833948..49833973,-!p2@SNAI2!0.79!35.45!SNAI2;;chr15:42749722..42749739,-!p2@ZFP106!0.79!9.61!ZFP106;;chr5:72743793..72743855,-!p4@FOXD1!0.79!6.19!FOXD1;;chr7:42276787..42276815,-!p1@GLI3!0.77!14.09!GLI3;;chr7:19157043..19157088,-!p2@TWIST1!0.77!13.03!TWIST1;;chr2:172950227..172950249,+!p2@DLX1!0.77!4.91!DLX1;;chr1:170633058..170633084,+!p5@PRRX1!0.77!4.91!PRRX1;;chr4:4861385..4861398,+!p1@MSX1!0.76!15.38!MSX1;;chr1:119530706..119530736,-!p3@TBX15!0.76!4.70!TBX15;;chr15:37390850..37390909,-!p3@MEIS2!0.75!9.61!MEIS2;;chr2:46524537..46524553,+!p1@EPAS1!0.74!498.02!EPAS1;;chr10:119302645..119302712,+!p3@EMX2!0.74!4.48!EMX2;;chr10:31610110..31610159,+!p2@ZEB1!0.74!4.48!ZEB1;;chr1:170632723..170632739,+!p8@PRRX1!0.74!4.48!PRRX1;;chr14:61116183..61116208,-!p1@SIX1!0.73!18.15!SIX1;;chr18:22932080..22932170,-!p1@ZNF521!0.72!19.86!ZNF521;;chr16:54964740..54964789,+!p1@IRX5!0.72!6.41!IRX5;;chr15:57511589..57511608,+!p4@TCF12!0.72!4.27!TCF12;;chr19:13135386..13135435,+!p4@NFIX!0.72!4.27!NFIX;;chr2:177001290..177001315,+!p1@HOXD3!0.72!4.27!HOXD3;;chr5:3595934..3595957,+!p2@IRX1!0.72!4.27!IRX1;;chr10:28032421..28032494,-!p2@MKX!0.72!4.27!MKX;;chr1:119530857..119530884,-!p4@TBX15!0.72!4.27!TBX15;;chr1:170632762..170632786,+!p13@PRRX1!0.72!4.27!PRRX1;;chr5:158526917..158526932,-!p1@EBF1!0.71!11.32!EBF1;;chr2:176969124..176969155,+!p5@HOXD11!0.70!4.06!HOXD11;;chr2:176981499..176981522,+!p2@HOXD10!0.70!4.06!HOXD10;;chr10:119302268..119302282,+!p4@EMX2!0.70!4.06!EMX2;;chr11:46299443..46299459,+!p4@CREB3L1!0.70!4.06!CREB3L1;;chr14:62162258..62162269,+!p2@HIF1A!0.69!42.71!HIF1A;;chr15:37392724..37392757,-!p1@MEIS2!0.69!20.29!MEIS2;;chr11:12696071..12696086,+!p3@TEAD1!0.69!5.34!TEAD1;;chr8:93115274..93115323,-!p4@RUNX1T1!0.69!3.84!RUNX1T1;;chr1:119530636..119530653,-!p2@TBX15!0.69!3.84!TBX15;;chr10:31607702..31607755,+!p3@ZEB1!0.68!4.48!ZEB1;;chr8:67525443..67525459,-!p2@MYBL1!0.67!5.77!MYBL1;;chr2:46612334..46612349,+!p6@EPAS1!0.67!5.13!EPAS1;;chr4:81118647..81118666,+!p1@PRDM8!0.67!5.13!PRDM8;;chr5:2751785..2751808,-!p2@IRX2!0.67!3.63!IRX2;;chr10:28035133..28035148,-!p3@MKX!0.67!3.63!MKX;;chr12:53625846..53625861,-!p6@RARG!0.67!3.63!RARG;;chr2:200322654..200322707,-!p2@SATB2!0.66!5.55!SATB2;;chr16:86544113..86544145,+!p1@FOXF1!0.65!4.48!FOXF1;;chr6:45296048..45296082,+!p1@RUNX2!0.65!4.06!RUNX2;;chr6:100912785..100912822,-!p1@SIM1!0.65!3.42!SIM1;;chr8:93115445..93115462,-!p7@RUNX1T1!0.65!3.42!RUNX1T1;;chr19:47523058..47523114,+!p1@NPAS1!0.65!3.42!NPAS1;;chr10:119302508..119302559,+!p5@EMX2!0.65!3.42!EMX2;;chr12:57914286..57914304,-!p1@DDIT3!0.64!144.15!DDIT3;;chr3:178789522..178789564,-!p2@ZMAT3!0.64!29.26!ZMAT3;;chr10:63853436..63853442,+!p4@ARID5B!0.64!20.93!ARID5B;;chr14:62162285..62162296,+!p3@HIF1A!0.64!20.50!HIF1A;;chr16:54320617..54320643,-!p3@IRX3!0.64!4.48!IRX3;;chr8:116681409..116681431,-!p2@TRPS1!0.63!10.25!TRPS1;;chr19:13134457..13134462,+!p5@NFIX!0.63!6.41!NFIX;;chr21:36421535..36421610,-!p2@RUNX1!0.62!13.03!RUNX1;;chr7:44143997..44144008,+!p3@AEBP1!0.62!4.27!AEBP1;;chr8:72756213..72756243,-!p5@MSC!0.62!4.27!MSC;;chr5:3595977..3595999,+!p1@IRX1!0.62!3.20!IRX1;;chr3:147110055..147110129,-!p1@ZIC4!0.62!3.20!ZIC4;;chr12:54410948..54410992,+!p3@HOXC5!0.62!3.20!HOXC5;;chr3:141105705..141105770,+!p4@ZBTB38!0.61!3.84!ZBTB38;;chr13:45151259..45151326,-!p2@TSC22D1!0.60!21.14!TSC22D1;;chr3:21792585..21792625,-!p2@ZNF385D!0.60!3.42!ZNF385D;;chr2:102091566..102091581,-!p1@RFX8!0.60!2.99!RFX8;;chr2:172949484..172949522,+!p1@DLX1!0.60!2.99!DLX1;;chr3:147111505..147111529,+!p6@ZIC1!0.60!2.99!ZIC1;;chr4:111558135..111558198,-!p2@PITX2!0.60!2.99!PITX2;;chr6:85474198..85474212,-!p3@TBX18!0.60!2.99!TBX18;;chr7:27192185..27192209,-!p1@HOXA3!0.60!2.99!HOXA3;;chr7:27196267..27196311,-!p1@HOXA7!0.60!2.99!HOXA7;;chr12:54402790..54402805,+!p2@HOXC8!0.60!2.99!HOXC8;;chr16:54320280..54320291,-!p9@IRX3!0.60!2.99!IRX3;;chr2:145275162..145275202,-!p2@ZEB2!0.59!20.72!ZEB2;;chr11:12696002..12696022,+!p2@TEAD1!0.59!8.12!TEAD1;;chr2:191878874..191878938,-!p1@STAT1!0.58!189.43!STAT1;;chr18:3451646..3451691,+!p3@TGIF1!0.58!8.76!TGIF1;;chr2:208031943..208031978,-!p5@KLF7!0.58!4.06!KLF7;;chr1:170632683..170632696,+!p12@PRRX1!0.58!2.78!PRRX1;;chr1:197886646..197886657,+!p5@LHX9!0.58!2.78!LHX9;;chr10:31607811..31607837,+!p6@ZEB1!0.58!2.78!ZEB1;;chr11:46333934..46333963,+!p5@CREB3L1!0.58!2.78!CREB3L1;;chr5:139492456..139492489,+!p7@PURA!0.58!2.78!PURA;;chr9:2015335..2015370,+!p1@SMARCA2!0.57!41.43!SMARCA2;;chr8:116681194..116681214,-!p1@TRPS1!0.57!30.97!TRPS1;;chr16:54320675..54320715,-!p1@IRX3!0.57!6.62!IRX3;;chr1:25256756..25256774,-!p1@RUNX3!0.57!5.77!RUNX3;;chr8:72756667..72756736,-!p2@MSC!0.57!4.70!MSC;;chr16:54320646..54320672,-!p2@IRX3!0.57!4.48!IRX3;;chr16:54320158..54320200,-!p5@IRX3!0.57!4.27!IRX3;;chr10:63809090..63809097,+!p7@ARID5B!0.57!4.06!ARID5B;;chr12:115121962..115121987,-!p1@TBX3!0.56!27.12!TBX3;;chr10:63809077..63809089,+!p5@ARID5B!0.56!6.62!ARID5B;;chr1:158969752..158969780,+!p6@IFI16!0.56!5.13!IFI16;;chr17:46622440..46622477,-!p5@HOXB2!0.56!2.99!HOXB2;;chr19:13106214..13106382,+!p1@NFIX!0.55!75.39!NFIX;;chr19:47922750..47922795,-!p1@MEIS3!0.55!4.70!MEIS3;;chr1:197886561..197886569,+!p10@LHX9!0.55!2.56!LHX9;;chr10:119301928..119301955,+!p7@EMX2!0.55!2.56!EMX2;;chr12:54393880..54393962,+!p1@HOXC9!0.55!2.56!HOXC9;;chr3:138665937..138665968,-!p1@FOXL2!0.55!2.56!FOXL2;;chr8:40755333..40755352,-!p1@ZMAT4!0.55!2.56!ZMAT4;;chr8:93115508..93115552,-!p6@RUNX1T1!0.55!2.56!RUNX1T1;;chr10:77161504..77161530,-!p1@ZNF503!0.54!41.64!ZNF503;;chr2:172967621..172967637,-!p1@DLX2!0.54!7.90!DLX2;;chr14:62162224..62162254,+!p1@HIF1A!0.53!45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|expression_enrichment_score=chr1:197886461..197886558,+!p1@LHX9!2.85!709.65!LHX9;;chr12:54410664..54410684,+!p1@HOXC4,p1@HOXC5,p1@HOXC6!1.78!58.94!HOXC5;;chr4:174451370..174451387,-!p1@HAND2!1.75!54.88!HAND2;;chr1:170632285..170632309,+!p1@PRRX1!1.72!58.51!PRRX1;;chr7:19157248..19157268,-!p1@TWIST1!1.68!125.36!TWIST1;;chr4:174450089..174450153,-!p2@HAND2!1.62!40.36!HAND2;;chr11:46299199..46299233,+!p1@CREB3L1!1.61!196.90!CREB3L1;;chr1:197886421..197886432,+!p2@LHX9!1.58!37.37!LHX9;;chr15:57511609..57511651,+!p2@TCF12!1.52!52.96!TCF12;;chr10:119303078..119303169,+!p2@EMX2!1.52!32.03!EMX2;;chr5:72744594..72744609,-!p1@FOXD1!1.49!131.12!FOXD1;;chr9:132427883..132427951,+!p2@PRRX2!1.46!27.98!PRRX2;;chr10:28034739..28034756,-!p1@MKX!1.45!27.34!MKX;;chr1:170633348..170633399,+!p2@PRRX1!1.44!35.88!PRRX1;;chr9:132427972..132428056,+!p1@PRRX2!1.42!32.67!PRRX2;;chr8:93074803..93074845,-!p1@RUNX1T1!1.37!22.42!RUNX1T1;;chrX:2418949..2419024,-!p1@DHRSX,p1@ZBED1!1.35!21.36!ZBED1;;chr2:239756671..239756732,+!p1@TWIST2!1.31!61.93!TWIST2;;chr2:239756739..239756755,+!p2@TWIST2!1.30!32.03!TWIST2;;chr2:176973498..176973524,+!p1@HOXD10!1.28!17.94!HOXD10;;chr10:119302232..119302265,+!p1@EMX2!1.21!15.38!EMX2;;chr2:119605214..119605230,-!p1@EN1!1.20!14.74!EN1;;chr5:2751762..2751784,-!p1@IRX2!1.19!14.52!IRX2;;chr19:13134772..13134822,+!p2@NFIX!1.18!20.93!NFIX;;chr1:197886665..197886732,+!p3@LHX9!1.18!14.09!LHX9;;chr3:157823517..157823562,-!p1@SHOX2!1.17!14.95!SHOX2;;chr2:19558373..19558392,-!p1@OSR1!1.16!36.73!OSR1;;chr10:63809013..63809041,+!p3@ARID5B!1.13!69.41!ARID5B;;chrX:591524..591527,+!p1@SHOX!1.13!12.60!SHOX;;chr2:176994408..176994492,+!p1@HOXD8!1.13!12.39!HOXD8;;chr12:54402745..54402788,+!p1@HOXC8!1.11!11.75!HOXC8;;chr7:44143925..44143970,+!p1@AEBP1!1.08!243.88!AEBP1;;chr12:54410639..54410659,+!p2@HOXC4,p2@HOXC5,p2@HOXC6!1.08!11.10!HOXC5;;chr20:55204351..55204377,+!p1@TFAP2C!1.07!13.88!TFAP2C;;chr11:44331576..44331650,-!p1@ALX4!1.07!10.68!ALX4;;chr18:53068911..53068935,-!p4@TCF4!1.06!11.96!TCF4;;chr11:46299539..46299620,+!p2@CREB3L1!1.05!17.30!CREB3L1;;chr5:72744445..72744466,-!p2@FOXD1!1.03!16.23!FOXD1;;chr8:93074848..93074871,-!p3@RUNX1T1!1.03!9.82!RUNX1T1;;chr2:176969097..176969109,+!p3@HOXD11!1.03!9.82!HOXD11;;chr7:27205136..27205164,-!p1@HOXA9!1.03!9.61!HOXA9;;chr1:170632959..170632987,+!p4@PRRX1!1.02!10.46!PRRX1;;chr1:170633262..170633285,+!p3@PRRX1!0.97!9.61!PRRX1;;chr2:176969228..176969260,+!p1@HOXD11!0.97!8.33!HOXD11;;chr4:174451350..174451363,-!p3@HAND2!0.96!8.12!HAND2;;chr3:147111231..147111281,+!p3@ZIC1!0.95!7.90!ZIC1;;chr1:170632477..170632506,+!p6@PRRX1!0.95!7.90!PRRX1;;chr7:27224795..27224840,-!p2@HOXA11!0.95!7.90!HOXA11;;chr7:27213893..27213954,-!p1@HOXA10!0.94!7.69!HOXA10;;chr7:27224842..27224872,-!p1@HOXA11!0.93!7.47!HOXA11;;chr1:170632115..170632136,+!p9@PRRX1!0.93!7.47!PRRX1;;chr6:19837592..19837621,+!p1@ID4!0.92!46.98!ID4;;chr14:24837368..24837401,+!p1@NFATC4!0.92!17.94!NFATC4;;chr6:85474299..85474324,-!p1@TBX18!0.92!13.45!TBX18;;chr6:10415276..10415341,-!p2@TFAP2A!0.92!8.97!TFAP2A;;chr15:83953397..83953425,-!p1@BNC1!0.92!8.54!BNC1;;chr1:54204818..54204870,-!p@chr1:54204818..54204870,-!0.90!7.47!GLIS1;;chr1:170632250..170632277,+!p7@PRRX1!0.89!6.83!PRRX1;;chr2:96012397..96012417,+!p3@KCNIP3!0.88!6.62!KCNIP3;;chr2:176969179..176969226,+!p2@HOXD11!0.86!6.19!HOXD11;;chr8:116673894..116673913,-!p12@TRPS1!0.86!6.19!TRPS1;;chr10:63809106..63809127,+!p1@ARID5B!0.85!87.77!ARID5B;;chr12:80085061..80085119,-!p6@PAWR!0.85!10.04!PAWR;;chr3:141121847..141121868,+!p5@ZBTB38!0.85!9.61!ZBTB38;;chr7:44143978..44143989,+!p2@AEBP1!0.84!11.32!AEBP1;;chr2:119604456..119604501,-!p2@EN1!0.84!5.98!EN1;;chr1:170632137..170632172,+!p10@PRRX1!0.84!5.98!PRRX1;;chr14:75894714..75894733,+!p1@JDP2!0.83!173.84!JDP2;;chr6:10412600..10412637,-!p1@TFAP2A!0.83!10.04!TFAP2A;;chr3:147111198..147111225,+!p4@ZIC1!0.83!5.77!ZIC1;;chr12:53614115..53614154,-!p1@RARG!0.82!32.03!RARG;;chr5:72744562..72744573,-!p3@FOXD1!0.82!7.05!FOXD1;;chr6:134210243..134210257,+!p1@TCF21!0.82!5.55!TCF21;;chr16:31076332..31076388,-!p3@ZNF668!0.82!5.55!ZNF668;;chr1:170632439..170632465,+!p11@PRRX1!0.82!5.55!PRRX1;;chr8:49833978..49833996,-!p1@SNAI2!0.80!119.38!SNAI2;;chr5:321810..321877,+!p1@AHRR!0.80!18.15!AHRR;;chr7:27205106..27205134,-!p2@HOXA9!0.80!5.34!HOXA9;;chr1:119530493..119530572,-!p1@TBX15!0.80!5.34!TBX15;;chr2:95963052..95963106,+!p1@KCNIP3!0.80!5.34!KCNIP3;;chr8:49833948..49833973,-!p2@SNAI2!0.79!35.45!SNAI2;;chr15:42749722..42749739,-!p2@ZFP106!0.79!9.61!ZFP106;;chr5:72743793..72743855,-!p4@FOXD1!0.79!6.19!FOXD1;;chr7:42276787..42276815,-!p1@GLI3!0.77!14.09!GLI3;;chr7:19157043..19157088,-!p2@TWIST1!0.77!13.03!TWIST1;;chr2:172950227..172950249,+!p2@DLX1!0.77!4.91!DLX1;;chr1:170633058..170633084,+!p5@PRRX1!0.77!4.91!PRRX1;;chr4:4861385..4861398,+!p1@MSX1!0.76!15.38!MSX1;;chr1:119530706..119530736,-!p3@TBX15!0.76!4.70!TBX15;;chr15:37390850..37390909,-!p3@MEIS2!0.75!9.61!MEIS2;;chr2:46524537..46524553,+!p1@EPAS1!0.74!498.02!EPAS1;;chr10:119302645..119302712,+!p3@EMX2!0.74!4.48!EMX2;;chr10:31610110..31610159,+!p2@ZEB1!0.74!4.48!ZEB1;;chr1:170632723..170632739,+!p8@PRRX1!0.74!4.48!PRRX1;;chr14:61116183..61116208,-!p1@SIX1!0.73!18.15!SIX1;;chr18:22932080..22932170,-!p1@ZNF521!0.72!19.86!ZNF521;;chr16:54964740..54964789,+!p1@IRX5!0.72!6.41!IRX5;;chr15:57511589..57511608,+!p4@TCF12!0.72!4.27!TCF12;;chr19:13135386..13135435,+!p4@NFIX!0.72!4.27!NFIX;;chr2:177001290..177001315,+!p1@HOXD3!0.72!4.27!HOXD3;;chr5:3595934..3595957,+!p2@IRX1!0.72!4.27!IRX1;;chr10:28032421..28032494,-!p2@MKX!0.72!4.27!MKX;;chr1:119530857..119530884,-!p4@TBX15!0.72!4.27!TBX15;;chr1:170632762..170632786,+!p13@PRRX1!0.72!4.27!PRRX1;;chr5:158526917..158526932,-!p1@EBF1!0.71!11.32!EBF1;;chr2:176969124..176969155,+!p5@HOXD11!0.70!4.06!HOXD11;;chr2:176981499..176981522,+!p2@HOXD10!0.70!4.06!HOXD10;;chr10:119302268..119302282,+!p4@EMX2!0.70!4.06!EMX2;;chr11:46299443..46299459,+!p4@CREB3L1!0.70!4.06!CREB3L1;;chr14:62162258..62162269,+!p2@HIF1A!0.69!42.71!HIF1A;;chr15:37392724..37392757,-!p1@MEIS2!0.69!20.29!MEIS2;;chr11:12696071..12696086,+!p3@TEAD1!0.69!5.34!TEAD1;;chr8:93115274..93115323,-!p4@RUNX1T1!0.69!3.84!RUNX1T1;;chr1:119530636..119530653,-!p2@TBX15!0.69!3.84!TBX15;;chr10:31607702..31607755,+!p3@ZEB1!0.68!4.48!ZEB1;;chr8:67525443..67525459,-!p2@MYBL1!0.67!5.77!MYBL1;;chr2:46612334..46612349,+!p6@EPAS1!0.67!5.13!EPAS1;;chr4:81118647..81118666,+!p1@PRDM8!0.67!5.13!PRDM8;;chr5:2751785..2751808,-!p2@IRX2!0.67!3.63!IRX2;;chr10:28035133..28035148,-!p3@MKX!0.67!3.63!MKX;;chr12:53625846..53625861,-!p6@RARG!0.67!3.63!RARG;;chr2:200322654..200322707,-!p2@SATB2!0.66!5.55!SATB2;;chr16:86544113..86544145,+!p1@FOXF1!0.65!4.48!FOXF1;;chr6:45296048..45296082,+!p1@RUNX2!0.65!4.06!RUNX2;;chr6:100912785..100912822,-!p1@SIM1!0.65!3.42!SIM1;;chr8:93115445..93115462,-!p7@RUNX1T1!0.65!3.42!RUNX1T1;;chr19:47523058..47523114,+!p1@NPAS1!0.65!3.42!NPAS1;;chr10:119302508..119302559,+!p5@EMX2!0.65!3.42!EMX2;;chr12:57914286..57914304,-!p1@DDIT3!0.64!144.15!DDIT3;;chr3:178789522..178789564,-!p2@ZMAT3!0.64!29.26!ZMAT3;;chr10:63853436..63853442,+!p4@ARID5B!0.64!20.93!ARID5B;;chr14:62162285..62162296,+!p3@HIF1A!0.64!20.50!HIF1A;;chr16:54320617..54320643,-!p3@IRX3!0.64!4.48!IRX3;;chr8:116681409..116681431,-!p2@TRPS1!0.63!10.25!TRPS1;;chr19:13134457..13134462,+!p5@NFIX!0.63!6.41!NFIX;;chr21:36421535..36421610,-!p2@RUNX1!0.62!13.03!RUNX1;;chr7:44143997..44144008,+!p3@AEBP1!0.62!4.27!AEBP1;;chr8:72756213..72756243,-!p5@MSC!0.62!4.27!MSC;;chr5:3595977..3595999,+!p1@IRX1!0.62!3.20!IRX1;;chr3:147110055..147110129,-!p1@ZIC4!0.62!3.20!ZIC4;;chr12:54410948..54410992,+!p3@HOXC5!0.62!3.20!HOXC5;;chr3:141105705..141105770,+!p4@ZBTB38!0.61!3.84!ZBTB38;;chr13:45151259..45151326,-!p2@TSC22D1!0.60!21.14!TSC22D1;;chr3:21792585..21792625,-!p2@ZNF385D!0.60!3.42!ZNF385D;;chr2:102091566..102091581,-!p1@RFX8!0.60!2.99!RFX8;;chr2:172949484..172949522,+!p1@DLX1!0.60!2.99!DLX1;;chr3:147111505..147111529,+!p6@ZIC1!0.60!2.99!ZIC1;;chr4:111558135..111558198,-!p2@PITX2!0.60!2.99!PITX2;;chr6:85474198..85474212,-!p3@TBX18!0.60!2.99!TBX18;;chr7:27192185..27192209,-!p1@HOXA3!0.60!2.99!HOXA3;;chr7:27196267..27196311,-!p1@HOXA7!0.60!2.99!HOXA7;;chr12:54402790..54402805,+!p2@HOXC8!0.60!2.99!HOXC8;;chr16:54320280..54320291,-!p9@IRX3!0.60!2.99!IRX3;;chr2:145275162..145275202,-!p2@ZEB2!0.59!20.72!ZEB2;;chr11:12696002..12696022,+!p2@TEAD1!0.59!8.12!TEAD1;;chr2:191878874..191878938,-!p1@STAT1!0.58!189.43!STAT1;;chr18:3451646..3451691,+!p3@TGIF1!0.58!8.76!TGIF1;;chr2:208031943..208031978,-!p5@KLF7!0.58!4.06!KLF7;;chr1:170632683..170632696,+!p12@PRRX1!0.58!2.78!PRRX1;;chr1:197886646..197886657,+!p5@LHX9!0.58!2.78!LHX9;;chr10:31607811..31607837,+!p6@ZEB1!0.58!2.78!ZEB1;;chr11:46333934..46333963,+!p5@CREB3L1!0.58!2.78!CREB3L1;;chr5:139492456..139492489,+!p7@PURA!0.58!2.78!PURA;;chr9:2015335..2015370,+!p1@SMARCA2!0.57!41.43!SMARCA2;;chr8:116681194..116681214,-!p1@TRPS1!0.57!30.97!TRPS1;;chr16:54320675..54320715,-!p1@IRX3!0.57!6.62!IRX3;;chr1:25256756..25256774,-!p1@RUNX3!0.57!5.77!RUNX3;;chr8:72756667..72756736,-!p2@MSC!0.57!4.70!MSC;;chr16:54320646..54320672,-!p2@IRX3!0.57!4.48!IRX3;;chr16:54320158..54320200,-!p5@IRX3!0.57!4.27!IRX3;;chr10:63809090..63809097,+!p7@ARID5B!0.57!4.06!ARID5B;;chr12:115121962..115121987,-!p1@TBX3!0.56!27.12!TBX3;;chr10:63809077..63809089,+!p5@ARID5B!0.56!6.62!ARID5B;;chr1:158969752..158969780,+!p6@IFI16!0.56!5.13!IFI16;;chr17:46622440..46622477,-!p5@HOXB2!0.56!2.99!HOXB2;;chr19:13106214..13106382,+!p1@NFIX!0.55!75.39!NFIX;;chr19:47922750..47922795,-!p1@MEIS3!0.55!4.70!MEIS3;;chr1:197886561..197886569,+!p10@LHX9!0.55!2.56!LHX9;;chr10:119301928..119301955,+!p7@EMX2!0.55!2.56!EMX2;;chr12:54393880..54393962,+!p1@HOXC9!0.55!2.56!HOXC9;;chr3:138665937..138665968,-!p1@FOXL2!0.55!2.56!FOXL2;;chr8:40755333..40755352,-!p1@ZMAT4!0.55!2.56!ZMAT4;;chr8:93115508..93115552,-!p6@RUNX1T1!0.55!2.56!RUNX1T1;;chr10:77161504..77161530,-!p1@ZNF503!0.54!41.64!ZNF503;;chr2:172967621..172967637,-!p1@DLX2!0.54!7.90!DLX2;;chr14:62162224..62162254,+!p1@HIF1A!0.53!45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|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000057;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002620;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002097;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002416
|ffid_belonging_in_development=CL:0000134
|ffid_belonging_in_development=CL:0000134
|fonse_cell_line=
|fonse_cell_line=
Line 38: Line 42:
|fonse_treatment_closure=
|fonse_treatment_closure=
|has_quality=
|has_quality=
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Fibroblast%2520-%2520skin%2520dystrophia%2520myotonica%252c%2520donor1.CNhs11353.11556-120C8.hg19.nobarcode.bam
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Fibroblast%2520-%2520skin%2520dystrophia%2520myotonica%252c%2520donor1.CNhs11353.11556-120C8.hg19.ctss.bed.gz
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Fibroblast%2520-%2520skin%2520dystrophia%2520myotonica%252c%2520donor1.CNhs11353.11556-120C8.hg19.nobarcode.rdna.fa.gz
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Fibroblast%2520-%2520skin%2520dystrophia%2520myotonica%252c%2520donor1.CNhs11353.11556-120C8.hg38.nobarcode.bam
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Fibroblast%2520-%2520skin%2520dystrophia%2520myotonica%252c%2520donor1.CNhs11353.11556-120C8.hg38.nobarcode.ctss.bed.gz
|id=FF:11556-120C8
|id=FF:11556-120C8
|is_a=EFO:0002091;;FF:0000253
|is_a=EFO:0002091;;FF:0000253
|is_obsolete=
|is_obsolete=
|library_id=CNhs11353
|library_id_phase_based=2:CNhs11353
|microRNAs=
|microRNAs_nn=
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11556
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11556
|name=Fibroblast - skin dystrophia myotonica, donor1
|name=Fibroblast - skin dystrophia myotonica, donor1
|namespace=FANTOM5
|namespace=FANTOM5
Line 46: Line 61:
|profile_cagescan=,,,
|profile_cagescan=,,,
|profile_hcage=CNhs11353,LSID769,release014,COMPLETED
|profile_hcage=CNhs11353,LSID769,release014,COMPLETED
|profile_rnaseq=,,,
|profile_rnaseq=
|profile_srnaseq=,,,
|profile_srnaseq=,,,
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Line 62: Line 79:
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|sample_cell_line=
Line 83: Line 101:
|top_motifs=NKX3-1:2.34299823391;MYBL2:1.86364023426;TAL1_TCF{3,4,12}:1.80111825962;ESR1:1.76004367515;HBP1_HMGB_SSRP1_UBTF:1.75325873706;ZNF238:1.64232016522;GZF1:1.63986956165;NKX3-2:1.53384668703;HMGA1,2:1.52251025542;TFAP4:1.49451428852;ATF6:1.46188238474;ALX4:1.43445920766;HIF1A:1.41425779837;TEF:1.41241750457;GCM1,2:1.38923391855;FOXD3:1.32886701786;FOXL1:1.30605101037;NKX2-2,8:1.30296630245;UFEwm:1.24848190468;TEAD1:1.23199292095;TP53:1.21727691058;KLF4:1.10536449511;HOX{A5,B5}:1.09783096288;XBP1:1.04179225379;NR3C1:1.02878785807;PDX1:1.02661275807;EVI1:1.01771099277;FOXO1,3,4:0.99620930929;SRF:0.98775245688;NFATC1..3:0.9557853362;ZNF384:0.925554683501;HAND1,2:0.920690153669;PRDM1:0.90066234009;IKZF1:0.894228489232;NKX2-3_NKX2-5:0.876039806234;TFAP2{A,C}:0.87018865952;GATA4:0.824296009056;GTF2A1,2:0.813976055961;GFI1B:0.808791525479;NFE2L1:0.800242368155;MAFB:0.799745558252;DBP:0.790285150197;AIRE:0.778474173699;NANOG{mouse}:0.77095217876;GLI1..3:0.759639751749;GTF2I:0.731059479201;NFIX:0.725152665473;HOX{A4,D4}:0.721126498369;HES1:0.705483612697;MAZ:0.694616613078;HMX1:0.692504510501;PAX8:0.691393162292;NKX2-1,4:0.678226976782;MZF1:0.66676600291;EBF1:0.656897350419;HSF1,2:0.646548535303;SOX17:0.636657080939;EN1,2:0.62572140291;TLX1..3_NFIC{dimer}:0.612170861793;PATZ1:0.595587131901;MTE{core}:0.593893858695;TBX4,5:0.590388671728;RXRA_VDR{dimer}:0.580302021101;PAX5:0.578626769986;HLF:0.565424017142;TFCP2:0.547041245903;FOXA2:0.541044749912;ZIC1..3:0.538223717942;SMAD1..7,9:0.524560880833;NR6A1:0.494635254928;NR1H4:0.485684974256;PAX1,9:0.480871096487;RXR{A,B,G}:0.467137449554;TFAP2B:0.460518504107;POU3F1..4:0.453666527881;SPZ1:0.413847396122;NFE2L2:0.35866176053;YY1:0.353386193256;PRRX1,2:0.319904887832;STAT1,3:0.318408606557;STAT5{A,B}:0.307443950649;SOX5:0.281075454791;EP300:0.271271806144;RREB1:0.254328610137;MYFfamily:0.246107229394;HOX{A6,A7,B6,B7}:0.238872306507;GFI1:0.238658532563;BPTF:0.221818930657;NKX6-1,2:0.220962345122;ADNP_IRX_SIX_ZHX:0.219440237911;LEF1_TCF7_TCF7L1,2:0.201821397106;LHX3,4:0.182133766968;IRF1,2:0.170383336314;ZNF148:0.169996138538;HIC1:0.161717293472;CEBPA,B_DDIT3:0.158995488705;DMAP1_NCOR{1,2}_SMARC:0.141485964889;EGR1..3:0.125304714067;NRF1:0.0950718706345;RFX1:0.0654921868831;XCPE1{core}:0.0635242294265;RUNX1..3:0.0625844268714;AHR_ARNT_ARNT2:0.056298662023;MEF2{A,B,C,D}:0.0551562917586;CDC5L:0.0542430016471;SP1:0.0369060133748;NHLH1,2:0.0181408339055;TOPORS:0.0126292319478;STAT2,4,6:0.0102453780875;ELK1,4_GABP{A,B1}:-0.00111775441453;POU5F1:-0.0168902843083;POU6F1:-0.0281592399724;NFE2:-0.0299609040839;TFDP1:-0.0313121253488;ZNF143:-0.0604464476557;ALX1:-0.0659194578077;BACH2:-0.0756309472781;TBP:-0.0816201936494;FOS_FOS{B,L1}_JUN{B,D}:-0.0868517343825;ZFP161:-0.0941702830474;FOX{D1,D2}:-0.0993824015924;SOX2:-0.101749244894;MED-1{core}:-0.117181527407;POU1F1:-0.122595489423;HNF1A:-0.150422745907;PAX4:-0.186763005818;REST:-0.214488307313;CREB1:-0.234484005497;ZBTB6:-0.239427799064;ZBTB16:-0.248268327295;ARID5B:-0.251466147048;MTF1:-0.263394403641;FOSL2:-0.270530887457;ZNF423:-0.285361306974;TLX2:-0.292312179644;VSX1,2:-0.335331923828;MYB:-0.335967421866;CRX:-0.361490500047;T:-0.370428819097;CUX2:-0.394941517953;RBPJ:-0.395251123075;PAX3,7:-0.401692783858;JUN:-0.407827705774;HNF4A_NR2F1,2:-0.421914111418;ATF4:-0.461622143319;FOX{I1,J2}:-0.46544869729;NFKB1_REL_RELA:-0.481807286576;CDX1,2,4:-0.481809244941;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.512103604794;ONECUT1,2:-0.52189234879;SPI1:-0.524607401948;NFIL3:-0.52668203631;TGIF1:-0.54735377561;bHLH_family:-0.551913259387;FOXM1:-0.552536283243;E2F1..5:-0.558902745568;PBX1:-0.560465465882;SREBF1,2:-0.616446680499;FOXN1:-0.617912769396;ATF2:-0.630651738063;FOX{F1,F2,J1}:-0.63380856111;ETS1,2:-0.637354898402;ELF1,2,4:-0.638305112148;PAX2:-0.653822528084;IKZF2:-0.660662008793;PPARG:-0.670904288975;IRF7:-0.671356268322;ATF5_CREB3:-0.672493524222;SPIB:-0.701095340276;SOX{8,9,10}:-0.737093432538;BREu{core}:-0.756368382537;RFX2..5_RFXANK_RFXAP:-0.773185869603;FOXP1:-0.808163134105;OCT4_SOX2{dimer}:-0.827772576357;PAX6:-0.83344085186;FOXP3:-0.835530298485;NR5A1,2:-0.840695304189;NFY{A,B,C}:-0.842867326426;SNAI1..3:-0.855034699637;ZEB1:-0.939558468131;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.940213049962;GATA6:-0.981166380063;AR:-0.985445353224;PITX1..3:-1.01104017488;LMO2:-1.17308280094;NANOG:-1.25047518634;ESRRA:-1.25838218551;RORA:-1.25942142155;POU2F1..3:-1.36980147552;FOXQ1:-1.4778551928;HOXA9_MEIS1:-1.53111080421;MYOD1:-1.563673453
|top_motifs=NKX3-1:2.34299823391;MYBL2:1.86364023426;TAL1_TCF{3,4,12}:1.80111825962;ESR1:1.76004367515;HBP1_HMGB_SSRP1_UBTF:1.75325873706;ZNF238:1.64232016522;GZF1:1.63986956165;NKX3-2:1.53384668703;HMGA1,2:1.52251025542;TFAP4:1.49451428852;ATF6:1.46188238474;ALX4:1.43445920766;HIF1A:1.41425779837;TEF:1.41241750457;GCM1,2:1.38923391855;FOXD3:1.32886701786;FOXL1:1.30605101037;NKX2-2,8:1.30296630245;UFEwm:1.24848190468;TEAD1:1.23199292095;TP53:1.21727691058;KLF4:1.10536449511;HOX{A5,B5}:1.09783096288;XBP1:1.04179225379;NR3C1:1.02878785807;PDX1:1.02661275807;EVI1:1.01771099277;FOXO1,3,4:0.99620930929;SRF:0.98775245688;NFATC1..3:0.9557853362;ZNF384:0.925554683501;HAND1,2:0.920690153669;PRDM1:0.90066234009;IKZF1:0.894228489232;NKX2-3_NKX2-5:0.876039806234;TFAP2{A,C}:0.87018865952;GATA4:0.824296009056;GTF2A1,2:0.813976055961;GFI1B:0.808791525479;NFE2L1:0.800242368155;MAFB:0.799745558252;DBP:0.790285150197;AIRE:0.778474173699;NANOG{mouse}:0.77095217876;GLI1..3:0.759639751749;GTF2I:0.731059479201;NFIX:0.725152665473;HOX{A4,D4}:0.721126498369;HES1:0.705483612697;MAZ:0.694616613078;HMX1:0.692504510501;PAX8:0.691393162292;NKX2-1,4:0.678226976782;MZF1:0.66676600291;EBF1:0.656897350419;HSF1,2:0.646548535303;SOX17:0.636657080939;EN1,2:0.62572140291;TLX1..3_NFIC{dimer}:0.612170861793;PATZ1:0.595587131901;MTE{core}:0.593893858695;TBX4,5:0.590388671728;RXRA_VDR{dimer}:0.580302021101;PAX5:0.578626769986;HLF:0.565424017142;TFCP2:0.547041245903;FOXA2:0.541044749912;ZIC1..3:0.538223717942;SMAD1..7,9:0.524560880833;NR6A1:0.494635254928;NR1H4:0.485684974256;PAX1,9:0.480871096487;RXR{A,B,G}:0.467137449554;TFAP2B:0.460518504107;POU3F1..4:0.453666527881;SPZ1:0.413847396122;NFE2L2:0.35866176053;YY1:0.353386193256;PRRX1,2:0.319904887832;STAT1,3:0.318408606557;STAT5{A,B}:0.307443950649;SOX5:0.281075454791;EP300:0.271271806144;RREB1:0.254328610137;MYFfamily:0.246107229394;HOX{A6,A7,B6,B7}:0.238872306507;GFI1:0.238658532563;BPTF:0.221818930657;NKX6-1,2:0.220962345122;ADNP_IRX_SIX_ZHX:0.219440237911;LEF1_TCF7_TCF7L1,2:0.201821397106;LHX3,4:0.182133766968;IRF1,2:0.170383336314;ZNF148:0.169996138538;HIC1:0.161717293472;CEBPA,B_DDIT3:0.158995488705;DMAP1_NCOR{1,2}_SMARC:0.141485964889;EGR1..3:0.125304714067;NRF1:0.0950718706345;RFX1:0.0654921868831;XCPE1{core}:0.0635242294265;RUNX1..3:0.0625844268714;AHR_ARNT_ARNT2:0.056298662023;MEF2{A,B,C,D}:0.0551562917586;CDC5L:0.0542430016471;SP1:0.0369060133748;NHLH1,2:0.0181408339055;TOPORS:0.0126292319478;STAT2,4,6:0.0102453780875;ELK1,4_GABP{A,B1}:-0.00111775441453;POU5F1:-0.0168902843083;POU6F1:-0.0281592399724;NFE2:-0.0299609040839;TFDP1:-0.0313121253488;ZNF143:-0.0604464476557;ALX1:-0.0659194578077;BACH2:-0.0756309472781;TBP:-0.0816201936494;FOS_FOS{B,L1}_JUN{B,D}:-0.0868517343825;ZFP161:-0.0941702830474;FOX{D1,D2}:-0.0993824015924;SOX2:-0.101749244894;MED-1{core}:-0.117181527407;POU1F1:-0.122595489423;HNF1A:-0.150422745907;PAX4:-0.186763005818;REST:-0.214488307313;CREB1:-0.234484005497;ZBTB6:-0.239427799064;ZBTB16:-0.248268327295;ARID5B:-0.251466147048;MTF1:-0.263394403641;FOSL2:-0.270530887457;ZNF423:-0.285361306974;TLX2:-0.292312179644;VSX1,2:-0.335331923828;MYB:-0.335967421866;CRX:-0.361490500047;T:-0.370428819097;CUX2:-0.394941517953;RBPJ:-0.395251123075;PAX3,7:-0.401692783858;JUN:-0.407827705774;HNF4A_NR2F1,2:-0.421914111418;ATF4:-0.461622143319;FOX{I1,J2}:-0.46544869729;NFKB1_REL_RELA:-0.481807286576;CDX1,2,4:-0.481809244941;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.512103604794;ONECUT1,2:-0.52189234879;SPI1:-0.524607401948;NFIL3:-0.52668203631;TGIF1:-0.54735377561;bHLH_family:-0.551913259387;FOXM1:-0.552536283243;E2F1..5:-0.558902745568;PBX1:-0.560465465882;SREBF1,2:-0.616446680499;FOXN1:-0.617912769396;ATF2:-0.630651738063;FOX{F1,F2,J1}:-0.63380856111;ETS1,2:-0.637354898402;ELF1,2,4:-0.638305112148;PAX2:-0.653822528084;IKZF2:-0.660662008793;PPARG:-0.670904288975;IRF7:-0.671356268322;ATF5_CREB3:-0.672493524222;SPIB:-0.701095340276;SOX{8,9,10}:-0.737093432538;BREu{core}:-0.756368382537;RFX2..5_RFXANK_RFXAP:-0.773185869603;FOXP1:-0.808163134105;OCT4_SOX2{dimer}:-0.827772576357;PAX6:-0.83344085186;FOXP3:-0.835530298485;NR5A1,2:-0.840695304189;NFY{A,B,C}:-0.842867326426;SNAI1..3:-0.855034699637;ZEB1:-0.939558468131;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.940213049962;GATA6:-0.981166380063;AR:-0.985445353224;PITX1..3:-1.01104017488;LMO2:-1.17308280094;NANOG:-1.25047518634;ESRRA:-1.25838218551;RORA:-1.25942142155;POU2F1..3:-1.36980147552;FOXQ1:-1.4778551928;HOXA9_MEIS1:-1.53111080421;MYOD1:-1.563673453
|xref=
|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11556-120C8;search_select_hide=table117:FF:11556-120C8
}}
}}

Latest revision as of 18:08, 4 June 2020

Name:Fibroblast - skin dystrophia myotonica, donor1
Species:Human (Homo sapiens)
Library ID:CNhs11353
Sample type:primary cells
Genomic View: UCSC
RefEX:Specific genes
FANTOM CAT:1, 2, 3, 4
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissueskin
dev stageNA
sexF
age2 year old child
cell typefibroblast
cell lineNA
companyCoriell
collaborationSplicing (contact: Al Forrest)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot numberNA
catalog numbercustom
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-TRIzol-ethanol-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00005292
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs11353 CAGE DRX008284 DRR009156
Accession ID Hg19

Library idBAMCTSS
CNhs11353 DRZ000581 DRZ001966
Accession ID Hg38

Library idBAMCTSS
CNhs11353 DRZ011931 DRZ013316
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis-0.0306
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma-0.221
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0.844
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19-0.00551
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle-0.00141
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140.148
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0.577
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed-0.0287
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte0
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0.316
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus-0.481
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0.215
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0.645
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD80
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth0
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small-0.408
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0.154
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0.0841
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0.433
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0.358
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0.722
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0.316
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0.802
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0.525
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs11353

Jaspar motifP-value
MA0002.20.289
MA0003.10.931
MA0004.10.0172
MA0006.10.302
MA0007.10.327
MA0009.10.0291
MA0014.10.446
MA0017.10.0979
MA0018.23.6589e-5
MA0019.10.854
MA0024.12.91578e-5
MA0025.10.0342
MA0027.10.68
MA0028.10.0587
MA0029.10.615
MA0030.10.706
MA0031.10.936
MA0035.20.0125
MA0038.10.207
MA0039.20.00301
MA0040.10.453
MA0041.10.461
MA0042.10.589
MA0043.13.70601e-4
MA0046.10.832
MA0047.20.792
MA0048.10.0759
MA0050.10.0512
MA0051.10.371
MA0052.10.0266
MA0055.10.562
MA0057.10.995
MA0058.10.00187
MA0059.10.0702
MA0060.11.38105e-7
MA0061.10.00734
MA0062.22.71539e-7
MA0065.20.0469
MA0066.10.939
MA0067.10.00573
MA0068.10.442
MA0069.10.116
MA0070.10.77
MA0071.10.355
MA0072.10.422
MA0073.10.538
MA0074.10.997
MA0076.10.122
MA0077.10.413
MA0078.10.44
MA0079.20.515
MA0080.26.21e-9
MA0081.10.008
MA0083.10.0485
MA0084.10.183
MA0087.10.732
MA0088.10.646
MA0090.15.91176e-6
MA0091.10.0608
MA0092.10.249
MA0093.10.0228
MA0099.20.00911
MA0100.10.304
MA0101.14.47622e-5
MA0102.20.503
MA0103.14.7804e-5
MA0104.22.05663e-4
MA0105.10.141
MA0106.10.0501
MA0107.14.23399e-4
MA0108.20.972
MA0111.10.222
MA0112.20.245
MA0113.10.946
MA0114.10.0463
MA0115.10.0677
MA0116.10.684
MA0117.10.675
MA0119.10.57
MA0122.10.518
MA0124.10.79
MA0125.10.681
MA0131.10.726
MA0135.10.0782
MA0136.11.09955e-9
MA0137.20.803
MA0138.20.445
MA0139.10.447
MA0140.10.0379
MA0141.10.0978
MA0142.10.022
MA0143.10.827
MA0144.10.876
MA0145.10.767
MA0146.10.548
MA0147.16.23353e-4
MA0148.10.941
MA0149.10.405
MA0150.10.00477
MA0152.10.0168
MA0153.10.678
MA0154.10.884
MA0155.10.567
MA0156.11.8889e-6
MA0157.10.931
MA0159.10.751
MA0160.10.00606
MA0162.10.121
MA0163.10.595
MA0164.10.798
MA0258.10.575
MA0259.10.248



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs11353

Novel motifP-value
10.251
100.376
1000.583
1010.378
1020.0231
1030.747
1040.782
1050.159
1060.275
1070.93
1080.671
1090.203
110.245
1100.766
1110.406
1120.733
1130.0382
1140.624
1150.267
1160.52
1170.033
1180.323
1190.15
120.454
1200.844
1210.503
1220.219
1230.00141
1240.558
1250.407
1260.64
1270.768
1280.633
1290.33
130.225
1300.543
1310.929
1320.584
1330.934
1340.419
1350.288
1360.264
1370.296
1380.748
1390.721
140.216
1400.908
1410.212
1420.746
1430.756
1440.392
1450.9
1460.618
1470.0811
1480.154
1490.0373
150.26
1500.354
1510.579
1520.41
1530.345
1540.434
1550.0409
1560.692
1570.203
1580.00889
1590.793
160.149
1600.686
1610.369
1620.372
1630.635
1640.809
1650.504
1660.0896
1670.175
1680.602
1690.201
170.727
180.126
190.0301
20.999
200.52
210.0305
220.673
230.543
240.417
250.214
260.896
270.896
280.472
290.73
30.752
300.25
310.652
327.02516e-15
330.562
340.788
350.875
360.0767
370.612
380.295
390.489
40.736
400.053
410.743
420.476
430.821
440.57
450.733
460.928
470.294
480.479
490.297
50.57
500.849
510.592
520.976
530.0978
540.835
550.214
560.628
570.944
580.117
590.375
60.679
600.298
610.21
620.394
630.901
640.32
650.607
660.215
670.973
680.425
690.783
70.0712
700.508
710.639
720.604
730.585
740.111
750.192
760.71
770.255
780.0995
790.0171
80.812
800.733
810.796
820.358
830.318
840.115
850.699
860.729
870.621
880.36
890.455
90.879
900.743
910.708
920.5
930.976
940.873
950.193
960.627
970.62
980.332
990.0167



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs11353


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0002320 (connective tissue cell)
0002371 (somatic cell)
0000255 (eukaryotic cell)
0000057 (fibroblast)
0002620 (skin fibroblast)

DOID: Disease
4 (disease)
17 (musculoskeletal system disease)
450 (myotonic disease)
7 (disease of anatomical entity)
66 (muscle tissue disease)
423 (myopathy)
0080000 (muscular disease)
11722 (myotonic dystrophy)

UBERON: Anatomy
0000468 (multi-cellular organism)
0002097 (skin of body)
0002199 (integument)
0002384 (connective tissue)
0000479 (tissue)
0000062 (organ)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0003102 (surface structure)
0002416 (integumental system)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000057 (fibroblast sample)
0000250 (human fibroblast of skin sample)
0000001 (sample)
0000253 (human fibroblast- skin dystrophia myotonica sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000134 (mesenchymal cell)

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