FF:11561-120D4: Difference between revisions

Latest revision as of 18:09, 4 June 2020

Name:	Fibroblast - skin normal, donor2
Species:	Human (Homo sapiens)
Library ID:	CNhs11914
Sample type:	primary cells
Genomic View:	UCSC
RefEX:	Specific genes
FANTOM CAT:	1, 2, 3, 4
CAGEd-oPOSSUM:	link
ZENBU report :	link

Additional information

Sample information

strain	NA
tissue	skin
dev stage	NA
sex	M
age	3 year old child
cell type	fibroblast
cell line	NA
company	Coriell
collaboration	Splicing (contact: Al Forrest)
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	NA
catalog number	custom
sample type	total RNA
extraction protocol (Details)	OP-RNA-extraction-totalRNA-TRIzol-ethanol-v1.0

CAGE Accession numbers

Method		Sample accession id
CAGE		SAMD00004977

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs11914		CAGE		DRX008288		DRR009160

Accession ID Hg19

Library id		BAM		CTSS
CNhs11914		DRZ000585		DRZ001970

Accession ID Hg38

Library id		BAM		CTSS
CNhs11914		DRZ011935		DRZ013320

Download raw sequence, BAM & CTSS

Hg19

Fasta	BAM	CTSS
download	download	donwload

Hg38

BAM	CTSS
download	donwload

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

Coexpression cluster	score
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral	0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate	0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural	0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial	0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel	0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS	0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils	0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural	0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis	-0.123
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy	0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood	0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate	0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma	0.23
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial	0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic	0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat	0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal	0
C113-thyroid-throat-lung-lymph-small-colon-trachea	0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma	0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus	0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea	0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal	0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula	0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD19	0
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils	0
C120-immature-salivary-tongue-skin-cervical-CD14-CD34	0
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B	0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal	0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils	0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte	0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus	0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain	0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil	0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP	0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small	0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD4	0
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar	0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin	0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived	0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma	0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis	0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum	0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal	0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic	0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal	0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal	0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen	0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen	0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B	0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair	0.587
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast	0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis	0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal	0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell	0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral	0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal	0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum	0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue	0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small	0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast	0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung	0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular	0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate	0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid	0
C156-plasma-splenic-hereditary-B-large-xeroderma-b	0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea	0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen	0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal	0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain	0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral	0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta	0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon	0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal	0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma	0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial	0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung	0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD4	0
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral	0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma	0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage	0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet	0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye	0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes	0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose	0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils	0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural	0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19	-0.0476
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous	0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus	0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil	0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood	0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle	-0.3
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar	0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute	0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt	0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid	0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis	0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid	0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage	0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat	0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen	0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma	0
C190-colon-small-rectum-duodenum-appendix-temporal-oral	0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic	0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD4	0
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD14	0.0404
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar	0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal	0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial	0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival	0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes	0.365
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma	0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast	0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat	0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed	-0.237
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall	0
C202-salivary-skin-penis-tongue-uterus-cervical-immature	0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic	0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD34	0
C205-mycosis-cord-hairy-xeroderma-CD4-B-b	0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary	0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte	0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous	0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen	0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic	0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil	0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney	0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD34	0
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral	0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain	0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature	0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD34	0
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital	0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary	0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum	0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD19	0
C220-Adipocyte-mature-left-breast-skin-liver-adipose	0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular	0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte	-0.285
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte	0.226
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal	0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal	0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal	0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue	0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult	0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart	0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD14	0
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung	0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis	0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum	0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF7	0
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma	0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas	0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma	0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial	0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell	0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy	0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral	0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal	0.143
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus	0.0351
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach	0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing	0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage	0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic	0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory	0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital	0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast	0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial	0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall	0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD4	0
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue	0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma	0.0404
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum	0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris	0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast	0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla	0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral	0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric	0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing	0.25
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole	0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood	0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal	0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms	0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil	0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute	0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8	0
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast	0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear	0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate	0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD4	0
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung	0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth	0
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum	0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil	0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast	0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte	0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal	0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal	0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma	0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory	0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial	0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic	0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD4	0
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small	0.116
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat	0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular	0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus	0.172
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic	0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial	0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal	0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal	0.635
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left	0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart	0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature	0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea	0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal	0.143
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD34	0
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral	0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte	0.88
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed	0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral	0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital	0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood	0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala	0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal	0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils	0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic	0.455
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid	0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole	0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus	0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea	0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory	0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen	0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile	0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula	0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt	0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea	0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms	0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD133	0
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus	0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small	0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal	0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon	0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder	0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature	0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS	0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel	0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix	0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus	0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma	0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas	0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma	0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas	0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma	0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary	0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature	0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma	0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue	0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural	0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H9	0
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic	0.604
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature	0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical	0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b	0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph	0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute	0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic	0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils	0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus	0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung	0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma	0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK	0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast	0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue	0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate	0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left	0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal	0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy	0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral	0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell	0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD8	0
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea	0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal	0.625
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD34	0
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast	0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid	0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD34	0
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic	0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon	0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma	0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma	0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic	0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived	0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic	0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left	0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen	0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair	0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole	0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular	0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma	0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid	0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix	0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain	0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole	0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs11914

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	0.241
MA0003.1	MA0003.1	0.641
MA0004.1	MA0004.1	0.00118
MA0006.1	MA0006.1	0.0574
MA0007.1	MA0007.1	0.756
MA0009.1	MA0009.1	0.545
MA0014.1	MA0014.1	0.195
MA0017.1	MA0017.1	0.148
MA0018.2	MA0018.2	0.00112
MA0019.1	MA0019.1	0.389
MA0024.1	MA0024.1	0.571
MA0025.1	MA0025.1	0.0717
MA0027.1	MA0027.1	0.805
MA0028.1	MA0028.1	0.472
MA0029.1	MA0029.1	0.419
MA0030.1	MA0030.1	0.054
MA0031.1	MA0031.1	0.0987
MA0035.2	MA0035.2	0.0535
MA0038.1	MA0038.1	0.702
MA0039.2	MA0039.2	0.0592
MA0040.1	MA0040.1	0.441
MA0041.1	MA0041.1	0.661
MA0042.1	MA0042.1	0.951
MA0043.1	MA0043.1	0.00347
MA0046.1	MA0046.1	0.618
MA0047.2	MA0047.2	0.26
MA0048.1	MA0048.1	0.0041
MA0050.1	MA0050.1	4.90195e-5
MA0051.1	MA0051.1	0.00656
MA0052.1	MA0052.1	0.228
MA0055.1	MA0055.1	0.0609
MA0057.1	MA0057.1	0.348
MA0058.1	MA0058.1	6.07594e-4
MA0059.1	MA0059.1	0.209
MA0060.1	MA0060.1	0.0982
MA0061.1	MA0061.1	0.0584
MA0062.2	MA0062.2	0.168
MA0065.2	MA0065.2	0.116
MA0066.1	MA0066.1	0.34
MA0067.1	MA0067.1	0.0314
MA0068.1	MA0068.1	0.61
MA0069.1	MA0069.1	0.0139
MA0070.1	MA0070.1	0.442
MA0071.1	MA0071.1	0.746
MA0072.1	MA0072.1	0.777
MA0073.1	MA0073.1	0.942
MA0074.1	MA0074.1	0.881
MA0076.1	MA0076.1	0.391
MA0077.1	MA0077.1	0.826
MA0078.1	MA0078.1	0.899
MA0079.2	MA0079.2	0.726
MA0080.2	MA0080.2	2.36182e-7
MA0081.1	MA0081.1	0.0218
MA0083.1	MA0083.1	0.00308
MA0084.1	MA0084.1	0.313
MA0087.1	MA0087.1	0.971
MA0088.1	MA0088.1	0.684
MA0090.1	MA0090.1	6.42359e-4
MA0091.1	MA0091.1	0.209
MA0092.1	MA0092.1	0.223
MA0093.1	MA0093.1	0.00621
MA0099.2	MA0099.2	0.326
MA0100.1	MA0100.1	0.6
MA0101.1	MA0101.1	8.58832e-5
MA0102.2	MA0102.2	0.0726
MA0103.1	MA0103.1	3.59354e-6
MA0104.2	MA0104.2	2.6611e-4
MA0105.1	MA0105.1	0.464
MA0106.1	MA0106.1	0.186
MA0107.1	MA0107.1	2.08465e-4
MA0108.2	MA0108.2	0.0211
MA0111.1	MA0111.1	0.0623
MA0112.2	MA0112.2	0.0971
MA0113.1	MA0113.1	0.606
MA0114.1	MA0114.1	0.0282
MA0115.1	MA0115.1	0.273
MA0116.1	MA0116.1	0.403
MA0117.1	MA0117.1	0.913
MA0119.1	MA0119.1	0.3
MA0122.1	MA0122.1	0.739
MA0124.1	MA0124.1	0.861
MA0125.1	MA0125.1	0.746
MA0131.1	MA0131.1	0.897
MA0135.1	MA0135.1	0.638
MA0136.1	MA0136.1	4.77179e-7
MA0137.2	MA0137.2	0.838
MA0138.2	MA0138.2	0.423
MA0139.1	MA0139.1	0.608
MA0140.1	MA0140.1	0.294
MA0141.1	MA0141.1	0.474
MA0142.1	MA0142.1	0.2
MA0143.1	MA0143.1	0.737
MA0144.1	MA0144.1	0.65
MA0145.1	MA0145.1	0.103
MA0146.1	MA0146.1	0.741
MA0147.1	MA0147.1	0.00779
MA0148.1	MA0148.1	0.226
MA0149.1	MA0149.1	0.45
MA0150.1	MA0150.1	0.0572
MA0152.1	MA0152.1	0.0101
MA0153.1	MA0153.1	0.449
MA0154.1	MA0154.1	0.549
MA0155.1	MA0155.1	0.619
MA0156.1	MA0156.1	0.0192
MA0157.1	MA0157.1	0.351
MA0159.1	MA0159.1	0.81
MA0160.1	MA0160.1	0.0295
MA0162.1	MA0162.1	0.082
MA0163.1	MA0163.1	0.0663
MA0164.1	MA0164.1	0.753
MA0258.1	MA0258.1	0.809
MA0259.1	MA0259.1	0.29

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs11914

Novel motif	Logo	P-value
1	1	0.831
10	10	0.905
100	100	0.242
101	101	0.137
102	102	0.232
103	103	0.541
104	104	0.706
105	105	0.551
106	106	0.847
107	107	0.917
108	108	0.736
109	109	0.846
11	11	0.796
110	110	0.49
111	111	0.385
112	112	0.945
113	113	0.00275
114	114	0.813
115	115	0.59
116	116	0.582
117	117	0.668
118	118	0.442
119	119	0.343
12	12	0.646
120	120	0.675
121	121	0.604
122	122	0.209
123	123	5.25223e-6
124	124	0.313
125	125	0.912
126	126	0.241
127	127	0.519
128	128	0.401
129	129	0.455
13	13	0.814
130	130	0.161
131	131	0.521
132	132	0.382
133	133	0.552
134	134	0.0723
135	135	0.11
136	136	0.119
137	137	0.618
138	138	0.382
139	139	0.103
14	14	0.302
140	140	0.0749
141	141	0.0853
142	142	0.393
143	143	0.869
144	144	0.788
145	145	0.526
146	146	0.861
147	147	0.39
148	148	0.0793
149	149	0.00777
15	15	0.363
150	150	0.219
151	151	0.389
152	152	0.0344
153	153	0.247
154	154	0.584
155	155	0.00279
156	156	0.881
157	157	0.0975
158	158	0.00795
159	159	0.326
16	16	0.225
160	160	0.681
161	161	0.0901
162	162	0.559
163	163	0.877
164	164	0.752
165	165	0.112
166	166	0.187
167	167	0.148
168	168	0.397
169	169	0.126
17	17	0.999
18	18	0.107
19	19	0.0127
2	2	0.23
20	20	0.424
21	21	0.134
22	22	0.501
23	23	0.855
24	24	0.359
25	25	0.499
26	26	0.504
27	27	0.867
28	28	0.639
29	29	0.708
3	3	0.588
30	30	0.242
31	31	0.974
32	32	2.48119e-8
33	33	0.574
34	34	0.87
35	35	0.442
36	36	0.0624
37	37	0.105
38	38	0.345
39	39	0.316
4	4	0.991
40	40	0.0785
41	41	0.91
42	42	0.517
43	43	0.772
44	44	0.357
45	45	0.895
46	46	0.901
47	47	0.988
48	48	0.912
49	49	0.282
5	5	0.814
50	50	0.335
51	51	0.624
52	52	0.886
53	53	0.227
54	54	0.915
55	55	0.174
56	56	0.564
57	57	0.594
58	58	0.165
59	59	0.253
6	6	0.606
60	60	0.393
61	61	0.398
62	62	0.49
63	63	0.706
64	64	0.564
65	65	0.999
66	66	0.465
67	67	0.588
68	68	0.483
69	69	0.502
7	7	0.275
70	70	0.141
71	71	0.828
72	72	0.482
73	73	0.0545
74	74	0.532
75	75	0.949
76	76	0.161
77	77	0.011
78	78	0.127
79	79	0.0239
8	8	0.777
80	80	0.997
81	81	0.267
82	82	0.992
83	83	0.183
84	84	0.275
85	85	0.471
86	86	0.164
87	87	0.0533
88	88	0.59
89	89	0.107
9	9	0.593
90	90	0.441
91	91	0.761
92	92	0.759
93	93	0.278
94	94	0.715
95	95	0.564
96	96	0.828
97	97	0.61
98	98	0.181
99	99	0.0682

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs11914

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
EFO:0002091 biological replicate
FF:0000250 human fibroblast of skin sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0002320 (connective tissue cell)
0002371 (somatic cell)
0000255 (eukaryotic cell)
0000057 (fibroblast)
0002620 (skin fibroblast)

UBERON: Anatomy
0000468 (multi-cellular organism)
0002097 (skin of body)
0002199 (integument)
0002384 (connective tissue)
0000479 (tissue)
0000062 (organ)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0003102 (surface structure)
0002416 (integumental system)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000057 (fibroblast sample)
0000250 (human fibroblast of skin sample)
0000001 (sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
CL:0000134 (mesenchymal cell)

@@ Line 1: / Line 1: @@
 {{f5samples
-|id=FF:11561-120D4
+|DRA_sample_Accession=CAGE@SAMD00004977
-|name=Fibroblast - skin normal, donor2
+|accession_numbers=CAGE;DRX008288;DRR009160;DRZ000585;DRZ001970;DRZ011935;DRZ013320
-|sample_id=11561
+|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0002097,UBERON:0002199,UBERON:0002384,UBERON:0000479,UBERON:0000062,UBERON:0000061,UBERON:0000465,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0003102,UBERON:0002416
-|rna_tube_id=120D4
+|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0002320,CL:0002371,CL:0000255,CL:0000057,CL:0002620
-|rna_box=120
-|rna_position=D4
-|sample_cell_lot=GM00498
-|sample_cell_catalog=N/A
-|sample_company=Coriell
-|rna_lot_number=
-|rna_catalog_number=custom
-|sample_species=Human (Homo sapiens)
-|sample_strain=
-|sample_dev_stage=
-|sample_tissue=skin
-|sample_donor(cell lot)=
-|sample_sex=M
-|sample_age=3 year old child
-|sample_ethnicity=U
-|rna_rin=
-|rna_od260/230=1.96
-|rna_od260/280=2.09
-|sample_cell_type=fibroblast
-|sample_cell_line=
-|sample_collaboration=Splicing (contact: Al Forrest)
-|sample_experimental_condition=
-|sample_disease=APPARENTLY HEALTHY NON-FETAL T
-|rna_sample_type=total RNA
-|rna_extraction_protocol=OP-RNA-extraction-totalRNA-TRIzol-ethanol-v1.0
-|rna_weight_ug=134.8569
-|rna_concentration=0.999
-|sample_note=Originally library704 tailing failed, the remaining sample is being rerun
-|profile_hcage=Cnhs11914,LSID842,release014,COMPLETED
-|profile_cagescan=,,,
-|profile_srnaseq=,,,
-|profile_rnaseq=,,,
-|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000004,CL:0000012,CL:0000034,CL:0000048,CL:0000055,CL:0000057,CL:0000063,CL:0000134,CL:0000144,CL:0000219,CL:0000255,CL:0000548,CL:0000723,CL:0002320,CL:0002371,CL:0002620
-|ancestors_in_anatomy_facet=UBERON:0000061,UBERON:0000062,UBERON:0000465,UBERON:0000467,UBERON:0000468,UBERON:0000475,UBERON:0000479,UBERON:0000480,UBERON:0001062,UBERON:0002097,UBERON:0002199,UBERON:0002384,UBERON:0002416,UBERON:0003102
 |ancestors_in_disease_facet=
-|sample_description=
+|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000057,FF:0000250,FF:0000001
+|comment=
+|created_by=
+|creation_date=
+|data_phase=2
+|datafreeze_phase=2
+|def=
+|expression_enrichment_score=chr12:54410664..54410684,+!p1@HOXC4,p1@HOXC5,p1@HOXC6!2.11!126.86!HOXC5;;chr9:132427883..132427951,+!p2@PRRX2!1.81!64.02!PRRX2;;chr7:19157248..19157268,-!p1@TWIST1!1.80!166.23!TWIST1;;chr1:170632285..170632309,+!p1@PRRX1!1.72!58.46!PRRX1;;chr1:197886461..197886558,+!p1@LHX9!1.72!52.03!LHX9;;chr9:132427972..132428056,+!p1@PRRX2!1.69!62.16!PRRX2;;chr1:170633348..170633399,+!p2@PRRX1!1.67!60.90!PRRX1;;chr17:46682321..46682362,-!p1@HOXB6!1.48!29.13!HOXB6;;chr12:54402745..54402788,+!p1@HOXC8!1.45!27.38!HOXC8;;chr10:119303078..119303169,+!p2@EMX2!1.45!27.28!EMX2;;chr11:46299199..46299233,+!p1@CREB3L1!1.41!124.52!CREB3L1;;chr1:170633262..170633285,+!p3@PRRX1!1.34!23.87!PRRX1;;chr19:47523058..47523114,+!p1@NPAS1!1.33!20.46!NPAS1;;chr5:72744594..72744609,-!p1@FOXD1!1.31!87.01!FOXD1;;chr12:54379029..54379057,+!p2@HOXC10!1.31!19.39!HOXC10;;chr6:19837592..19837621,+!p1@ID4!1.30!112.73!ID4;;chr19:13134772..13134822,+!p2@NFIX!1.30!27.87!NFIX;;chr15:57511609..57511651,+!p2@TCF12!1.26!28.55!TCF12;;chr6:10415276..10415341,-!p2@TFAP2A!1.26!20.85!TFAP2A;;chr6:134210243..134210257,+!p1@TCF21!1.26!17.34!TCF21;;chr1:209979467..209979494,-!p1@IRF6!1.25!18.81!IRF6;;chr12:54393880..54393962,+!p1@HOXC9!1.25!16.76!HOXC9;;chr1:170633058..170633084,+!p5@PRRX1!1.21!15.40!PRRX1;;chr2:239756739..239756755,+!p2@TWIST2!1.20!25.53!TWIST2;;chr12:54410639..54410659,+!p2@HOXC4,p2@HOXC5,p2@HOXC6!1.19!14.62!HOXC5;;chr5:2751762..2751784,-!p1@IRX2!1.17!13.74!IRX2;;chr11:46299539..46299620,+!p2@CREB3L1!1.16!22.80!CREB3L1;;chr5:72744445..72744466,-!p2@FOXD1!1.16!22.22!FOXD1;;chr1:170632959..170632987,+!p4@PRRX1!1.14!13.93!PRRX1;;chr6:10412600..10412637,-!p1@TFAP2A!1.13!20.66!TFAP2A;;chr12:54378923..54378966,+!p1@HOXC10!1.13!12.57!HOXC10;;chr12:54380404..54380433,+!p3@HOXC10!1.12!12.28!HOXC10;;chr2:119605214..119605230,-!p1@EN1!1.09!11.40!EN1;;chr17:46667594..46667619,-!p1@HOXB3!1.08!11.01!HOXB3;;chr2:176994408..176994492,+!p1@HOXD8!1.04!10.04!HOXD8;;chr2:239756671..239756732,+!p1@TWIST2!1.03!31.47!TWIST2;;chr4:111558135..111558198,-!p2@PITX2!1.02!9.55!PITX2;;chr4:174450089..174450153,-!p2@HAND2!1.02!9.45!HAND2;;chr1:170632477..170632506,+!p6@PRRX1!1.01!9.26!PRRX1;;chrY:21906594..21906622,-!p1@KDM5D!1.01!9.16!KDM5D;;chr1:170632723..170632739,+!p8@PRRX1!1.00!9.06!PRRX1;;chr12:53614115..53614154,-!p1@RARG!0.99!47.84!RARG;;chr8:49833948..49833973,-!p2@SNAI2!0.98!55.83!SNAI2;;chr4:4861385..4861398,+!p1@MSX1!0.97!25.43!MSX1;;chr16:54964740..54964789,+!p1@IRX5!0.96!11.98!IRX5;;chr18:53068911..53068935,-!p4@TCF4!0.95!9.06!TCF4;;chr3:128206762..128206781,-!p2@GATA2!0.94!50.08!GATA2;;chr2:85981107..85981120,+!p3@ATOH8!0.94!7.79!ATOH8;;chr7:27192185..27192209,-!p1@HOXA3!0.93!7.50!HOXA3;;chr19:50432453..50432468,+!p1@ATF5!0.92!430.57!ATF5;;chr1:170632250..170632277,+!p7@PRRX1!0.92!7.31!PRRX1;;chr10:114889045..114889074,+!p12@TCF7L2!0.92!7.31!TCF7L2;;chr12:54402729..54402743,+!p3@HOXC8!0.91!7.11!HOXC8;;chr5:72744562..72744573,-!p3@FOXD1!0.90!8.87!FOXD1;;chr1:23885981..23886002,-!p1@ID3!0.89!1251.09!ID3;;chr2:85980951..85981004,+!p1@ATOH8!0.88!11.01!ATOH8;;chr1:170632137..170632172,+!p10@PRRX1!0.87!6.43!PRRX1;;chr2:223163706..223163730,-!p1@PAX3!0.86!6.24!PAX3;;chr12:54380036..54380091,+!p4@HOXC10!0.86!6.24!HOXC10;;chr10:114710244..114710257,+!p3@TCF7L2!0.85!17.15!TCF7L2;;chr1:200379104..200379128,-!p2@ZNF281!0.85!15.40!ZNF281;;chr21:36260773..36260804,-!p7@RUNX1!0.85!8.38!RUNX1;;chr10:119302645..119302712,+!p3@EMX2!0.85!6.04!EMX2;;chr7:27205136..27205164,-!p1@HOXA9!0.85!6.04!HOXA9;;chr16:54320617..54320643,-!p3@IRX3!0.84!7.79!IRX3;;chr7:27224842..27224872,-!p1@HOXA11!0.84!5.94!HOXA11;;chr1:170632439..170632465,+!p11@PRRX1!0.83!5.75!PRRX1;;chrY:2803415..2803468,+!p1@ZFY!0.83!5.75!ZFY;;chr8:49833978..49833996,-!p1@SNAI2!0.82!123.06!SNAI2;;chr12:54402790..54402805,+!p2@HOXC8!0.82!5.65!HOXC8;;chr2:172949484..172949522,+!p1@DLX1!0.82!5.55!DLX1;;chr4:174451370..174451387,-!p1@HAND2!0.82!5.55!HAND2;;chr7:27205106..27205134,-!p2@HOXA9!0.81!5.46!HOXA9;;chr19:13135386..13135435,+!p4@NFIX!0.80!5.36!NFIX;;chr15:37392534..37392562,-!p10@MEIS2!0.79!5.75!MEIS2;;chr15:37390482..37390572,-!p7@MEIS2!0.78!7.21!MEIS2;;chr10:119302508..119302559,+!p5@EMX2!0.78!4.97!EMX2;;chr2:8822176..8822196,+!p1@ID2!0.77!763.71!ID2;;chr10:63809106..63809127,+!p1@ARID5B!0.77!73.08!ARID5B;;chr19:13135582..13135600,+!p3@NFIX!0.77!4.87!NFIX;;chr2:119604456..119604501,-!p2@EN1!0.77!4.87!EN1;;chr12:80085061..80085119,-!p6@PAWR!0.76!7.89!PAWR;;chr8:67525443..67525459,-!p2@MYBL1!0.76!7.31!MYBL1;;chr13:37494275..37494304,-!p2@SMAD9!0.76!4.77!SMAD9;;chr2:85981073..85981091,+!p5@ATOH8!0.75!4.68!ATOH8;;chr15:37392616..37392638,-!p2@MEIS2!0.74!15.30!MEIS2;;chr20:51588873..51588953,+!p1@TSHZ2!0.74!6.14!TSHZ2;;chr2:172967242..172967265,-!p2@DLX2!0.74!4.48!DLX2;;chr5:2751785..2751808,-!p2@IRX2!0.74!4.48!IRX2;;chr15:37390850..37390909,-!p3@MEIS2!0.73!9.16!MEIS2;;chr17:46667628..46667642,-!p2@HOXB3!0.73!4.38!HOXB3;;chr1:170632683..170632696,+!p12@PRRX1!0.73!4.38!PRRX1;;chr20:48599506..48599526,+!p1@SNAI1!0.72!30.50!SNAI1;;chr5:72743793..72743855,-!p4@FOXD1!0.72!5.07!FOXD1;;chr17:46675420..46675465,-!p3@HOXB6!0.72!4.97!HOXB6;;chr20:30193083..30193098,+!p1@ID1!0.71!379.52!ID1;;chr7:44143925..44143970,+!p1@AEBP1!0.71!104.45!AEBP1;;chr6:85473156..85473210,-!p2@TBX18!0.71!5.16!TBX18;;chr1:170632115..170632136,+!p9@PRRX1!0.71!4.09!PRRX1;;chr3:52001448..52001478,-!p2@PCBP4!0.70!64.02!PCBP4;;chr15:37390374..37390422,-!p9@MEIS2!0.70!5.07!MEIS2;;chr17:46690839..46690884,-!p1@HOXB8!0.70!3.99!HOXB8;;chr2:102091566..102091581,-!p1@RFX8!0.70!3.99!RFX8;;chr10:77161504..77161530,-!p1@ZNF503!0.69!59.05!ZNF503;;chr5:321810..321877,+!p1@AHRR!0.69!13.93!AHRR;;chr1:158979872..158979898,+!p3@IFI16!0.69!13.25!IFI16;;chr7:44143978..44143989,+!p2@AEBP1!0.69!7.70!AEBP1;;chr11:65686802..65686818,+!p6@DRAP1!0.69!7.21!DRAP1;;chr16:54320646..54320672,-!p2@IRX3!0.69!6.33!IRX3;;chr15:83953397..83953425,-!p1@BNC1!0.69!4.58!BNC1;;chr14:75894714..75894733,+!p1@JDP2!0.68!124.52!JDP2;;chr6:144329384..144329405,-!p1@PLAGL1!0.68!50.96!PLAGL1;;chr15:37392724..37392757,-!p1@MEIS2!0.68!19.49!MEIS2;;chr17:46687959..46688007,-!p2@HOXB7!0.68!5.46!HOXB7;;chr6:1389789..1389821,+!p1@FOXF2!0.68!5.46!FOXF2;;chr16:31076332..31076388,-!p3@ZNF668!0.68!3.80!ZNF668;;chr1:119530493..119530572,-!p1@TBX15!0.68!3.80!TBX15;;chr10:63809013..63809041,+!p3@ARID5B!0.67!23.48!ARID5B;;chr11:12696071..12696086,+!p3@TEAD1!0.67!5.07!TEAD1;;chr1:2985760..2985774,+!p1@PRDM16!0.67!3.70!PRDM16;;chr12:124873357..124873401,-!p1@NCOR2!0.66!47.65!NCOR2;;chr11:65687362..65687436,+!p3@DRAP1!0.66!18.61!DRAP1;;chr11:65686732..65686756,+!p2@DRAP1!0.66!17.25!DRAP1;;chr8:106330656..106330684,+!p1@ZFPM2!0.66!10.43!ZFPM2;;chr7:27224795..27224840,-!p2@HOXA11!0.66!3.61!HOXA11;;chr16:54320675..54320715,-!p1@IRX3!0.65!8.18!IRX3;;chr19:31840130..31840160,-!p2@TSHZ3!0.65!5.75!TSHZ3;;chr17:46688334..46688385,-!p1@HOXB7!0.65!5.26!HOXB7;;chr19:13136130..13136165,+!p6@NFIX!0.65!4.87!NFIX;;chr2:172967276..172967296,-!p3@DLX2!0.65!3.51!DLX2;;chr10:119302232..119302265,+!p1@EMX2!0.65!3.51!EMX2;;chr12:54394309..54394336,+!p2@HOXC9!0.65!3.51!HOXC9;;chr2:85981222..85981259,+!p2@ATOH8!0.64!5.94!ATOH8;;chr11:46299186..46299195,+!p3@CREB3L1!0.64!3.90!CREB3L1;;chr13:37494248..37494260,-!p3@SMAD9!0.64!3.41!SMAD9;;chr1:170633194..170633205,+!p18@PRRX1!0.64!3.41!PRRX1;;chr2:172950227..172950249,+!p2@DLX1!0.64!3.41!DLX1;;chr2:85980768..85980783,+!p10@ATOH8!0.64!3.41!ATOH8;;chr3:128212033..128212051,-!p1@GATA2!0.64!3.41!GATA2;;chr6:10412576..10412599,-!p5@TFAP2A!0.64!3.41!TFAP2A;;chr7:27213893..27213954,-!p1@HOXA10!0.64!3.41!HOXA10;;chr14:24837368..24837401,+!p1@NFATC4!0.63!8.67!NFATC4;;chr15:37391588..37391604,-!p11@MEIS2!0.63!4.38!MEIS2;;chr12:54410948..54410992,+!p3@HOXC5!0.63!3.31!HOXC5;;chr2:102091144..102091183,-!p2@RFX8!0.63!3.31!RFX8;;chr2:177001290..177001315,+!p1@HOXD3!0.63!3.31!HOXD3;;chr7:44143997..44144008,+!p3@AEBP1!0.62!4.19!AEBP1;;chr14:62162258..62162269,+!p2@HIF1A!0.61!35.08!HIF1A;;chr16:54320101..54320125,-!p4@IRX3!0.61!4.68!IRX3;;chr2:119605056..119605071,-!p10@EN1!0.61!3.12!EN1;;chr5:88081308..88081333,-!p8@MEF2C!0.61!3.12!MEF2C;;chr1:170632907..170632916,+!p22@PRRX1!0.61!3.12!PRRX1;;chr15:37392576..37392589,-!p12@MEIS2!0.60!3.80!MEIS2;;chr16:86612320..86612394,+!p1@FOXL1!0.60!3.02!FOXL1;;chr1:197886665..197886732,+!p3@LHX9!0.60!3.02!LHX9;;chr2:172967621..172967637,-!p1@DLX2!0.59!8.96!DLX2;;chr11:65687222..65687240,+!p7@DRAP1!0.59!3.90!DRAP1;;chr10:114889016..114889037,+!p15@TCF7L2!0.59!2.92!TCF7L2;;chr12:54380112..54380126,+!p5@HOXC10!0.59!2.92!HOXC10;;chr8:93074803..93074845,-!p1@RUNX1T1!0.59!2.92!RUNX1T1;;chr19:13106214..13106382,+!p1@NFIX!0.58!79.41!NFIX;;chrX:106960180..106960197,-!p2@TSC22D3!0.58!12.57!TSC22D3;;chr7:19157043..19157088,-!p2@TWIST1!0.58!8.18!TWIST1;;chr13:37494365..37494381,-!p1@SMAD9!0.58!5.46!SMAD9;;chr19:50435736..50435781,+!p3@ATF5!0.58!4.09!ATF5;;chr17:46691732..46691766,-!p4@HOXB8!0.58!2.83!HOXB8;;chr12:114843940..114843955,-!p2@TBX5!0.58!2.83!TBX5;;chr12:54394416..54394467,+!p5@HOXC9!0.58!2.83!HOXC9;;chr18:53257001..53257015,-!p5@TCF4!0.57!5.16!TCF4;;chr2:85980919..85980942,+!p4@ATOH8!0.57!2.92!ATOH8;;chr2:172967323..172967336,-!p4@DLX2!0.57!2.73!DLX2;;chr12:54384370..54384382,+!p5@HOXC6!0.57!2.73!HOXC6;;chr12:54378984..54378996,+!p7@HOXC10!0.56!2.63!HOXC10;;chr1:170632867..170632878,+!p21@PRRX1!0.56!2.63!PRRX1;;chr2:172967353..172967365,-!p5@DLX2!0.56!2.63!DLX2;;chr2:85981027..85981047,+!p8@ATOH8!0.56!2.63!ATOH8;;chr17:70117153..70117174,+!p1@SOX9!0.55!32.64!SOX9;;chr7:42276787..42276815,-!p1@GLI3!0.55!7.99!GLI3;;chr5:139492456..139492489,+!p7@PURA!0.55!2.53!PURA;;chr2:85981008..85981025,+!p7@ATOH8!0.55!2.53!ATOH8;;chr11:46299443..46299459,+!p4@CREB3L1!0.55!2.53!CREB3L1;;chr1:2985726..2985752,+!p2@PRDM16!0.55!2.53!PRDM16;;chr11:46333934..46333963,+!p5@CREB3L1!0.54!2.44!CREB3L1;;chr15:57511589..57511608,+!p4@TCF12!0.54!2.44!TCF12;;chr3:114343768..114343822,-!p1@ZBTB20!0.53!13.06!ZBTB20;;chr3:71630980..71631110,-!p3@FOXP1!0.52!9.94!FOXP1;;chr2:666622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+|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000057;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002620;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002097;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002416
+|ffid_belonging_in_development=CL:0000134
 |fonse_cell_line=
 |fonse_cell_line_closure=
@@ Line 66: / Line 41: @@
 |fonse_treatment=
 |fonse_treatment_closure=
-|top_motifs=
-|comment=
-|created_by=
-|creation_date=
-|def=
 |has_quality=
-|is_a=EFO:0002091;;FF:0000002;;FF:0000210;;FF:0000250
+|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Fibroblast%2520-%2520skin%2520normal%252c%2520donor2.CNhs11914.11561-120D4.hg19.nobarcode.bam
+|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Fibroblast%2520-%2520skin%2520normal%252c%2520donor2.CNhs11914.11561-120D4.hg19.ctss.bed.gz
+|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Fibroblast%2520-%2520skin%2520normal%252c%2520donor2.CNhs11914.11561-120D4.hg19.nobarcode.rdna.fa.gz
+|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Fibroblast%2520-%2520skin%2520normal%252c%2520donor2.CNhs11914.11561-120D4.hg38.nobarcode.bam
+|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Fibroblast%2520-%2520skin%2520normal%252c%2520donor2.CNhs11914.11561-120D4.hg38.nobarcode.ctss.bed.gz
+|id=FF:11561-120D4
+|is_a=EFO:0002091;;FF:0000250
+|is_obsolete=
+|library_id=CNhs11914
+|library_id_phase_based=2:CNhs11914
+|microRNAs=
+|microRNAs_nn=
+|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11561
+|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11561
+|name=Fibroblast - skin normal, donor2
 |namespace=
 |part_of=
+|profile_cagescan=,,,
+|profile_hcage=CNhs11914,LSID842,release014,COMPLETED
+|profile_rnaseq=
+|profile_srnaseq=,,,
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+|rna_box=120
+|rna_catalog_number=custom
+|rna_concentration=0.999
+|rna_extraction_protocol=OP-RNA-extraction-totalRNA-TRIzol-ethanol-v1.0
+|rna_lot_number=
+|rna_od260/230=1.96
+|rna_od260/280=2.09
+|rna_position=D4
+|rna_rin=
+|rna_sample_type=total RNA
+|rna_tube_id=120D4
+|rna_weight_ug=134.8569
+|sample_age=3 year old child
+|sample_category=primary cells
+|sample_cell_catalog=N/A
+|sample_cell_line=
+|sample_cell_lot=GM00498
+|sample_cell_type=fibroblast
+|sample_collaboration=Splicing (contact: Al Forrest)
+|sample_company=Coriell
+|sample_description=
+|sample_dev_stage=
+|sample_disease=APPARENTLY HEALTHY NON-FETAL T
+|sample_donor(cell lot)=
+|sample_ethnicity=U
+|sample_experimental_condition=
+|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;1.07861901259728e-237!GO:0043226;organelle;4.07459966591131e-192!GO:0043229;intracellular organelle;9.82221731108118e-192!GO:0043231;intracellular membrane-bound organelle;1.3596010761274e-184!GO:0043227;membrane-bound organelle;1.49647827637597e-184!GO:0005737;cytoplasm;2.13468576365535e-172!GO:0044422;organelle part;8.81670766313915e-136!GO:0044446;intracellular organelle part;4.6841745957868e-134!GO:0044444;cytoplasmic part;6.61587647293996e-122!GO:0032991;macromolecular complex;6.70932624186694e-95!GO:0044238;primary metabolic process;1.84939176518266e-85!GO:0043170;macromolecule metabolic process;8.52568606007542e-85!GO:0044237;cellular metabolic process;1.47077328153909e-84!GO:0005515;protein binding;1.07273766866324e-83!GO:0030529;ribonucleoprotein complex;4.43646953172834e-81!GO:0005634;nucleus;4.81574872650347e-80!GO:0044428;nuclear part;8.50709475957195e-69!GO:0043233;organelle lumen;1.83905447064328e-67!GO:0031974;membrane-enclosed lumen;1.83905447064328e-67!GO:0003723;RNA binding;4.71837660075138e-66!GO:0016043;cellular component organization and biogenesis;2.09863230009571e-52!GO:0005739;mitochondrion;7.67029114616951e-52!GO:0043234;protein complex;4.00973575556594e-48!GO:0005840;ribosome;1.1993203025752e-47!GO:0043283;biopolymer metabolic process;1.59536853950869e-47!GO:0019538;protein metabolic process;8.50534414417906e-46!GO:0010467;gene expression;1.01221302937248e-45!GO:0006412;translation;1.35401050723681e-45!GO:0006396;RNA processing;1.66998948362896e-45!GO:0015031;protein transport;1.9936445856915e-45!GO:0033036;macromolecule localization;4.89431735005931e-45!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;3.55358597544361e-43!GO:0031090;organelle membrane;8.54505258758731e-43!GO:0003735;structural constituent of ribosome;1.12976479553393e-42!GO:0031981;nuclear lumen;5.32866327227096e-42!GO:0008104;protein localization;9.39554988266588e-42!GO:0045184;establishment of protein localization;1.25611478176772e-41!GO:0044260;cellular macromolecule metabolic process;5.35123034615845e-40!GO:0044267;cellular protein metabolic process;1.78799023541681e-39!GO:0016071;mRNA metabolic process;9.2168980859156e-38!GO:0046907;intracellular transport;1.09881665027966e-36!GO:0005829;cytosol;1.23671118767759e-36!GO:0033279;ribosomal subunit;1.59445512700467e-36!GO:0044429;mitochondrial part;3.55444966300359e-36!GO:0008380;RNA splicing;3.52745257505314e-35!GO:0043228;non-membrane-bound organelle;4.55293830727468e-35!GO:0043232;intracellular non-membrane-bound organelle;4.55293830727468e-35!GO:0009059;macromolecule biosynthetic process;7.37140710258565e-34!GO:0031967;organelle envelope;1.03206372089959e-33!GO:0006996;organelle organization and biogenesis;2.09608977601964e-33!GO:0031975;envelope;2.33050648472829e-33!GO:0006397;mRNA processing;2.81864461557903e-33!GO:0009058;biosynthetic process;1.13229666395187e-31!GO:0044249;cellular biosynthetic process;1.13229666395187e-31!GO:0065003;macromolecular complex assembly;7.57346387013893e-31!GO:0006886;intracellular protein transport;3.97101875062541e-30!GO:0022607;cellular component assembly;1.31444910303944e-28!GO:0022613;ribonucleoprotein complex biogenesis and assembly;4.6287673083125e-28!GO:0005830;cytosolic ribosome (sensu Eukaryota);1.95476317724083e-27!GO:0003676;nucleic acid binding;7.4612377750676e-27!GO:0005654;nucleoplasm;2.27544978348091e-26!GO:0006259;DNA metabolic process;2.99668616651801e-25!GO:0005681;spliceosome;5.23271260363816e-25!GO:0051649;establishment of cellular localization;2.77696039252873e-23!GO:0005740;mitochondrial envelope;2.85574955446935e-23!GO:0051641;cellular localization;6.81963315857631e-23!GO:0000166;nucleotide binding;5.65455226678686e-22!GO:0007049;cell cycle;8.04333674387194e-22!GO:0016070;RNA metabolic process;8.74424138810096e-22!GO:0031966;mitochondrial membrane;9.15995684499504e-22!GO:0019866;organelle inner membrane;1.23588418162402e-21!GO:0006457;protein folding;1.50468731910542e-21!GO:0044451;nucleoplasm part;2.11303961239984e-21!GO:0044445;cytosolic part;2.87634745524496e-21!GO:0006119;oxidative phosphorylation;1.37100742032906e-20!GO:0016462;pyrophosphatase activity;2.01284511259922e-20!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;2.28278556751686e-20!GO:0016817;hydrolase activity, acting on acid anhydrides;3.83333500826549e-20!GO:0005743;mitochondrial inner membrane;4.01496646600388e-20!GO:0017111;nucleoside-triphosphatase activity;1.01827541471613e-19!GO:0005783;endoplasmic reticulum;3.58530737489688e-19!GO:0015935;small ribosomal subunit;7.3628646623084e-19!GO:0015934;large ribosomal subunit;1.58346497169268e-18!GO:0022618;protein-RNA complex assembly;4.32833814938493e-18!GO:0012505;endomembrane system;6.67088160252701e-18!GO:0044455;mitochondrial membrane part;8.89508009271432e-18!GO:0048770;pigment granule;2.61940480123447e-17!GO:0042470;melanosome;2.61940480123447e-17!GO:0008134;transcription factor binding;2.8468000221832e-17!GO:0022402;cell cycle process;3.33376062768683e-17!GO:0000278;mitotic cell cycle;1.10149612922674e-16!GO:0006512;ubiquitin cycle;1.44186285991309e-16!GO:0048193;Golgi vesicle transport;1.97269112979033e-16!GO:0008135;translation factor activity, nucleic acid binding;6.48165918786779e-16!GO:0051603;proteolysis involved in cellular protein catabolic process;8.5789543722041e-16!GO:0016874;ligase activity;1.26710472447202e-15!GO:0032553;ribonucleotide binding;1.41264799325901e-15!GO:0032555;purine ribonucleotide binding;1.41264799325901e-15!GO:0005794;Golgi apparatus;1.52842627375873e-15!GO:0019941;modification-dependent protein catabolic process;1.78382040699889e-15!GO:0043632;modification-dependent macromolecule catabolic process;1.78382040699889e-15!GO:0044432;endoplasmic reticulum part;2.26391649889172e-15!GO:0006511;ubiquitin-dependent protein catabolic process;2.35542347953431e-15!GO:0044257;cellular protein catabolic process;2.60118661761901e-15!GO:0005730;nucleolus;2.61121311952877e-15!GO:0017076;purine nucleotide binding;2.94715117807529e-15!GO:0006974;response to DNA damage stimulus;3.21886691127007e-15!GO:0000502;proteasome complex (sensu Eukaryota);3.53796555069204e-15!GO:0005746;mitochondrial respiratory chain;5.6042909433868e-15!GO:0031980;mitochondrial lumen;6.23960862909581e-15!GO:0005759;mitochondrial matrix;6.23960862909581e-15!GO:0044265;cellular macromolecule catabolic process;6.80060570787858e-15!GO:0043285;biopolymer catabolic process;8.35533846769337e-15!GO:0051082;unfolded protein binding;9.55275753214063e-15!GO:0006605;protein targeting;9.96827195693905e-15!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;1.03363655428563e-14!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);3.07735894651966e-14!GO:0030163;protein catabolic process;9.67261124546837e-14!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);1.133398394657e-13!GO:0050136;NADH dehydrogenase (quinone) activity;1.42120823977691e-13!GO:0003954;NADH dehydrogenase activity;1.42120823977691e-13!GO:0008137;NADH dehydrogenase (ubiquinone) activity;1.42120823977691e-13!GO:0016192;vesicle-mediated transport;1.4807201150213e-13!GO:0009057;macromolecule catabolic process;2.62117536886691e-13!GO:0000398;nuclear mRNA splicing, via spliceosome;4.6360444901461e-13!GO:0000375;RNA splicing, via transesterification reactions;4.6360444901461e-13!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;4.6360444901461e-13!GO:0005761;mitochondrial ribosome;6.80169257324375e-13!GO:0000313;organellar ribosome;6.80169257324375e-13!GO:0000087;M phase of mitotic cell cycle;1.1016921331057e-12!GO:0007067;mitosis;1.54877795694418e-12!GO:0005524;ATP binding;1.75859332556278e-12!GO:0022403;cell cycle phase;1.80265518104695e-12!GO:0005694;chromosome;1.80781355694569e-12!GO:0006281;DNA repair;1.80781355694569e-12!GO:0051186;cofactor metabolic process;2.76252825765134e-12!GO:0003743;translation initiation factor activity;3.00792284561037e-12!GO:0003712;transcription cofactor activity;3.29401150273579e-12!GO:0032559;adenyl ribonucleotide binding;4.39281669695441e-12!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;4.44020758646578e-12!GO:0042775;organelle ATP synthesis coupled electron transport;5.67038149273771e-12!GO:0042773;ATP synthesis coupled electron transport;5.67038149273771e-12!GO:0005793;ER-Golgi intermediate compartment;7.53506235060507e-12!GO:0030964;NADH dehydrogenase complex (quinone);8.43953057766421e-12!GO:0045271;respiratory chain complex I;8.43953057766421e-12!GO:0005747;mitochondrial respiratory chain complex I;8.43953057766421e-12!GO:0006413;translational initiation;9.17395616513446e-12!GO:0051301;cell division;1.11214122672042e-11!GO:0030554;adenyl nucleotide binding;1.21620738820048e-11!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;2.11157084682091e-11!GO:0009719;response to endogenous stimulus;3.01821825592966e-11!GO:0044248;cellular catabolic process;3.0502972131608e-11!GO:0005635;nuclear envelope;4.23046516528212e-11!GO:0044427;chromosomal part;4.72815775326031e-11!GO:0042254;ribosome biogenesis and assembly;8.40667307021719e-11!GO:0016604;nuclear body;9.591604320111e-11!GO:0050794;regulation of cellular process;9.94819716783343e-11!GO:0042175;nuclear envelope-endoplasmic reticulum network;1.69752900858821e-10!GO:0043412;biopolymer modification;1.80739857643619e-10!GO:0031965;nuclear membrane;1.96148586963374e-10!GO:0051276;chromosome organization and biogenesis;2.41887231547866e-10!GO:0016887;ATPase activity;5.84633961125821e-10!GO:0005789;endoplasmic reticulum membrane;5.84633961125821e-10!GO:0008565;protein transporter activity;6.07228301638975e-10!GO:0006366;transcription from RNA polymerase II promoter;6.30439290448671e-10!GO:0006446;regulation of translational initiation;6.83062531844741e-10!GO:0042623;ATPase activity, coupled;9.78205250306878e-10!GO:0009259;ribonucleotide metabolic process;1.03704361103116e-09!GO:0044453;nuclear membrane part;1.1416501331318e-09!GO:0000279;M phase;1.25320372223133e-09!GO:0009055;electron carrier activity;1.35125166336867e-09!GO:0006913;nucleocytoplasmic transport;1.35564436361666e-09!GO:0006260;DNA replication;1.3645302969614e-09!GO:0006888;ER to Golgi vesicle-mediated transport;1.6594453024104e-09!GO:0006732;coenzyme metabolic process;1.93807059914172e-09!GO:0006464;protein modification process;2.20957601913921e-09!GO:0051169;nuclear transport;2.77891308561685e-09!GO:0051726;regulation of cell cycle;2.89757512777174e-09!GO:0000074;regulation of progression through cell cycle;2.89797346641391e-09!GO:0008639;small protein conjugating enzyme activity;3.59435671783169e-09!GO:0019787;small conjugating protein ligase activity;3.59987263309443e-09!GO:0006163;purine nucleotide metabolic process;3.77081523893672e-09!GO:0015630;microtubule cytoskeleton;4.4311003054766e-09!GO:0048523;negative regulation of cellular process;4.64785551453971e-09!GO:0009150;purine ribonucleotide metabolic process;4.79083162743188e-09!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;4.97841966276711e-09!GO:0016607;nuclear speck;5.02621943943555e-09!GO:0006461;protein complex assembly;5.48716051281532e-09!GO:0004842;ubiquitin-protein ligase activity;6.5821027116836e-09!GO:0006325;establishment and/or maintenance of chromatin architecture;7.73879318812463e-09!GO:0012501;programmed cell death;9.18674563274102e-09!GO:0004386;helicase activity;1.00410992232432e-08!GO:0009260;ribonucleotide biosynthetic process;1.15762719068205e-08!GO:0016879;ligase activity, forming carbon-nitrogen bonds;1.29638993968955e-08!GO:0009199;ribonucleoside triphosphate metabolic process;1.31443254255695e-08!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;1.45663492560417e-08!GO:0006164;purine nucleotide biosynthetic process;1.50934518045539e-08!GO:0043687;post-translational protein modification;1.6893211709961e-08!GO:0008026;ATP-dependent helicase activity;1.8489118868459e-08!GO:0009152;purine ribonucleotide biosynthetic process;1.86322612978011e-08!GO:0006915;apoptosis;1.93779523558389e-08!GO:0009205;purine ribonucleoside triphosphate metabolic process;2.01059785443369e-08!GO:0009144;purine nucleoside triphosphate metabolic process;2.01059785443369e-08!GO:0006323;DNA packaging;2.08444758644577e-08!GO:0009141;nucleoside triphosphate metabolic process;2.24396162993259e-08!GO:0003924;GTPase activity;2.51910530624554e-08!GO:0006399;tRNA metabolic process;3.58649090532352e-08!GO:0005788;endoplasmic reticulum lumen;3.70279097512548e-08!GO:0030120;vesicle coat;3.88462045823211e-08!GO:0030662;coated vesicle membrane;3.88462045823211e-08!GO:0008219;cell death;4.53290353951874e-08!GO:0016265;death;4.53290353951874e-08!GO:0015986;ATP synthesis coupled proton transport;5.09242025967661e-08!GO:0015985;energy coupled proton transport, down electrochemical gradient;5.09242025967661e-08!GO:0009060;aerobic respiration;7.51861443984578e-08!GO:0016881;acid-amino acid ligase activity;7.51861443984578e-08!GO:0005643;nuclear pore;7.58781394790648e-08!GO:0065002;intracellular protein transport across a membrane;7.65546272414504e-08!GO:0009142;nucleoside triphosphate biosynthetic process;8.50805837594576e-08!GO:0009201;ribonucleoside triphosphate biosynthetic process;8.50805837594576e-08!GO:0017038;protein import;9.49117170360823e-08!GO:0048519;negative regulation of biological process;1.01525956190228e-07!GO:0050789;regulation of biological process;1.04917940736461e-07!GO:0046034;ATP metabolic process;1.20714589745864e-07!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;1.31128945593564e-07!GO:0009145;purine nucleoside triphosphate biosynthetic process;1.31128945593564e-07!GO:0065004;protein-DNA complex assembly;1.43998331428042e-07!GO:0045333;cellular respiration;1.80338516507681e-07!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;1.95450755223282e-07!GO:0004812;aminoacyl-tRNA ligase activity;1.95450755223282e-07!GO:0016875;ligase activity, forming carbon-oxygen bonds;1.95450755223282e-07!GO:0030532;small nuclear ribonucleoprotein complex;2.31486570595587e-07!GO:0003714;transcription corepressor activity;2.44876294356737e-07!GO:0005768;endosome;2.47437294669606e-07!GO:0043038;amino acid activation;2.51579592316423e-07!GO:0006418;tRNA aminoacylation for protein translation;2.51579592316423e-07!GO:0043039;tRNA aminoacylation;2.51579592316423e-07!GO:0048475;coated membrane;2.5474677048298e-07!GO:0030117;membrane coat;2.5474677048298e-07!GO:0019222;regulation of metabolic process;3.14504023956552e-07!GO:0007010;cytoskeleton organization and biogenesis;3.45955288374417e-07!GO:0030036;actin cytoskeleton organization and biogenesis;3.51734820199744e-07!GO:0051187;cofactor catabolic process;4.68719891023793e-07!GO:0051246;regulation of protein metabolic process;5.09635715082543e-07!GO:0003697;single-stranded DNA binding;5.09635715082543e-07!GO:0019829;cation-transporting ATPase activity;5.18186496414875e-07!GO:0005667;transcription factor complex;5.44355043574314e-07!GO:0006099;tricarboxylic acid cycle;5.50996283190935e-07!GO:0046356;acetyl-CoA catabolic process;5.50996283190935e-07!GO:0006754;ATP biosynthetic process;6.86728759596239e-07!GO:0006753;nucleoside phosphate metabolic process;6.86728759596239e-07!GO:0006333;chromatin assembly or disassembly;7.6509710682959e-07!GO:0006403;RNA localization;8.12525647553689e-07!GO:0050657;nucleic acid transport;8.18875067855104e-07!GO:0051236;establishment of RNA localization;8.18875067855104e-07!GO:0050658;RNA transport;8.18875067855104e-07!GO:0006364;rRNA processing;8.21581663675411e-07!GO:0046930;pore complex;8.66700946415679e-07!GO:0044431;Golgi apparatus part;9.00718505477798e-07!GO:0009109;coenzyme catabolic process;1.00625259948819e-06!GO:0005813;centrosome;1.17087645525821e-06!GO:0031324;negative regulation of cellular metabolic process;1.39878287884091e-06!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;1.42151588418952e-06!GO:0005819;spindle;1.45496122565302e-06!GO:0009056;catabolic process;1.52652213206105e-06!GO:0051789;response to protein stimulus;1.55457689490464e-06!GO:0006986;response to unfolded protein;1.55457689490464e-06!GO:0043566;structure-specific DNA binding;1.56586557038004e-06!GO:0016072;rRNA metabolic process;1.58394010161442e-06!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;1.60491108650105e-06!GO:0005798;Golgi-associated vesicle;1.72003392841928e-06!GO:0016564;transcription repressor activity;1.96587484442033e-06!GO:0006084;acetyl-CoA metabolic process;2.19937335527577e-06!GO:0000785;chromatin;2.21041865597111e-06!GO:0016469;proton-transporting two-sector ATPase complex;2.44422600701306e-06!GO:0005815;microtubule organizing center;3.2142345817358e-06!GO:0000245;spliceosome assembly;3.23501503387339e-06!GO:0031202;RNA splicing factor activity, transesterification mechanism;3.39284116942514e-06!GO:0005525;GTP binding;3.39740910511729e-06!GO:0006613;cotranslational protein targeting to membrane;3.56225454794331e-06!GO:0015078;hydrogen ion transmembrane transporter activity;3.61825037707715e-06!GO:0032446;protein modification by small protein conjugation;3.90297146166334e-06!GO:0008361;regulation of cell size;4.40420531218119e-06!GO:0000151;ubiquitin ligase complex;4.78802951729132e-06!GO:0016049;cell growth;5.39445517762095e-06!GO:0045259;proton-transporting ATP synthase complex;5.84394204287109e-06!GO:0030029;actin filament-based process;6.02640623094614e-06!GO:0016567;protein ubiquitination;7.87168323318193e-06!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;7.92633414292969e-06!GO:0005839;proteasome core complex (sensu Eukaryota);8.32707779232897e-06!GO:0009892;negative regulation of metabolic process;9.32744821934263e-06!GO:0044440;endosomal part;9.97990534440788e-06!GO:0010008;endosome membrane;9.97990534440788e-06!GO:0031252;leading edge;1.17720216396279e-05!GO:0051188;cofactor biosynthetic process;1.22494691125742e-05!GO:0016859;cis-trans isomerase activity;1.30095279806757e-05!GO:0016853;isomerase activity;1.427952264792e-05!GO:0051170;nuclear import;1.621405823428e-05!GO:0006752;group transfer coenzyme metabolic process;1.66437665104332e-05!GO:0007005;mitochondrion organization and biogenesis;1.79985135930044e-05!GO:0043069;negative regulation of programmed cell death;1.79985135930044e-05!GO:0009117;nucleotide metabolic process;1.89239834757779e-05!GO:0003713;transcription coactivator activity;2.02435123179238e-05!GO:0006357;regulation of transcription from RNA polymerase II promoter;2.04712268264686e-05!GO:0051028;mRNA transport;2.05301216599872e-05!GO:0043067;regulation of programmed cell death;2.09312574839691e-05!GO:0019843;rRNA binding;2.22783050814203e-05!GO:0016568;chromatin modification;2.23863828946806e-05!GO:0016563;transcription activator activity;2.26536437823676e-05!GO:0042981;regulation of apoptosis;2.34393084671043e-05!GO:0006334;nucleosome assembly;2.50472159937088e-05!GO:0006606;protein import into nucleus;2.62231281240311e-05!GO:0007051;spindle organization and biogenesis;2.67618062985284e-05!GO:0045786;negative regulation of progression through cell cycle;2.68136978551335e-05!GO:0006916;anti-apoptosis;2.70850979033308e-05!GO:0031988;membrane-bound vesicle;2.7569402734106e-05!GO:0051329;interphase of mitotic cell cycle;2.82585164409579e-05!GO:0032561;guanyl ribonucleotide binding;2.98095347967149e-05!GO:0019001;guanyl nucleotide binding;2.98095347967149e-05!GO:0051325;interphase;3.11600948538469e-05!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;3.34321860783432e-05!GO:0016779;nucleotidyltransferase activity;3.38294339333805e-05!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;3.3948201703536e-05!GO:0043066;negative regulation of apoptosis;3.45705592328831e-05!GO:0004298;threonine endopeptidase activity;3.5510949144622e-05!GO:0043623;cellular protein complex assembly;3.56145644897952e-05!GO:0001558;regulation of cell growth;3.79371490581277e-05!GO:0030867;rough endoplasmic reticulum membrane;3.79563443614503e-05!GO:0016023;cytoplasmic membrane-bound vesicle;3.85992907901953e-05!GO:0000775;chromosome, pericentric region;3.93245677149226e-05!GO:0003724;RNA helicase activity;4.37126930919375e-05!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;4.61222882688572e-05!GO:0008092;cytoskeletal protein binding;4.69410452272875e-05!GO:0031497;chromatin assembly;5.3666826729701e-05!GO:0006612;protein targeting to membrane;5.50369710344761e-05!GO:0005770;late endosome;5.7564064842865e-05!GO:0030133;transport vesicle;5.94100183999797e-05!GO:0000139;Golgi membrane;6.08471983787079e-05!GO:0045454;cell redox homeostasis;6.87731076902998e-05!GO:0016491;oxidoreductase activity;6.92740112914816e-05!GO:0006793;phosphorus metabolic process;6.97127189462356e-05!GO:0006796;phosphate metabolic process;6.97127189462356e-05!GO:0043021;ribonucleoprotein binding;9.33065882889609e-05!GO:0031982;vesicle;9.34233355136478e-05!GO:0016310;phosphorylation;9.59892657802593e-05!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;9.62110201857878e-05!GO:0031323;regulation of cellular metabolic process;9.95181974024567e-05!GO:0016363;nuclear matrix;0.00010934487615088!GO:0016481;negative regulation of transcription;0.000130061952042611!GO:0015077;monovalent inorganic cation transmembrane transporter activity;0.000133970796595573!GO:0015980;energy derivation by oxidation of organic compounds;0.000134997392433192!GO:0065007;biological regulation;0.000140589731834256!GO:0005762;mitochondrial large ribosomal subunit;0.000142091974024675!GO:0000315;organellar large ribosomal subunit;0.000142091974024675!GO:0031410;cytoplasmic vesicle;0.000144270040542183!GO:0000075;cell cycle checkpoint;0.000147638819084629!GO:0009108;coenzyme biosynthetic process;0.000158932343135438!GO:0033116;ER-Golgi intermediate compartment membrane;0.000172459145906069!GO:0030663;COPI coated vesicle membrane;0.000202756204670635!GO:0030126;COPI vesicle coat;0.000202756204670635!GO:0005905;coated pit;0.000207481336166468!GO:0005773;vacuole;0.000216917615879736!GO:0005769;early endosome;0.000225486264475159!GO:0005048;signal sequence binding;0.000229770035965643!GO:0016787;hydrolase activity;0.000243374125343541!GO:0005885;Arp2/3 protein complex;0.000251674113909552!GO:0006350;transcription;0.000258820989518035!GO:0019899;enzyme binding;0.000304361590089697!GO:0000314;organellar small ribosomal subunit;0.000317291851980061!GO:0005763;mitochondrial small ribosomal subunit;0.000317291851980061!GO:0003899;DNA-directed RNA polymerase activity;0.000354215177671772!GO:0008250;oligosaccharyl transferase complex;0.000386317079170064!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.000466274068027831!GO:0016740;transferase activity;0.000504834413494261!GO:0030137;COPI-coated vesicle;0.000517027184677755!GO:0006891;intra-Golgi vesicle-mediated transport;0.000519154682737169!GO:0004576;oligosaccharyl transferase activity;0.000531872782937268!GO:0008654;phospholipid biosynthetic process;0.000574265732344509!GO:0016772;transferase activity, transferring phosphorus-containing groups;0.000576767342618279!GO:0005874;microtubule;0.000580932138706297!GO:0007249;I-kappaB kinase/NF-kappaB cascade;0.000597608611909966!GO:0006261;DNA-dependent DNA replication;0.000656059679290605!GO:0015631;tubulin binding;0.000660251022050115!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;0.000669170918680981!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.000675279641178254!GO:0051427;hormone receptor binding;0.000722642344303671!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.000822432892285392!GO:0003729;mRNA binding;0.000833877293716384!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.000862557989087576!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.0009042776399905!GO:0008186;RNA-dependent ATPase activity;0.000923699079910664!GO:0019867;outer membrane;0.0009271428575809!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.000959339457989622!GO:0031968;organelle outer membrane;0.000967442444794994!GO:0005791;rough endoplasmic reticulum;0.00101216153585915!GO:0051920;peroxiredoxin activity;0.00101666527038821!GO:0051168;nuclear export;0.00101854394415828!GO:0048500;signal recognition particle;0.00104190035460817!GO:0010468;regulation of gene expression;0.00105690350040825!GO:0000776;kinetochore;0.00105690350040825!GO:0018196;peptidyl-asparagine modification;0.00113883627183807!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.00113883627183807!GO:0006383;transcription from RNA polymerase III promoter;0.00115296991049113!GO:0000323;lytic vacuole;0.0012044750852575!GO:0005764;lysosome;0.0012044750852575!GO:0005852;eukaryotic translation initiation factor 3 complex;0.001222572105537!GO:0006302;double-strand break repair;0.00129794471290299!GO:0006414;translational elongation;0.00130001466897333!GO:0006091;generation of precursor metabolites and energy;0.00133370641679242!GO:0035257;nuclear hormone receptor binding;0.00135549524214962!GO:0048471;perinuclear region of cytoplasm;0.00142088569962626!GO:0031072;heat shock protein binding;0.00146977332558338!GO:0006626;protein targeting to mitochondrion;0.00150284140552235!GO:0016281;eukaryotic translation initiation factor 4F complex;0.00150284140552235!GO:0016197;endosome transport;0.0015488265644185!GO:0005657;replication fork;0.00164701327676961!GO:0051252;regulation of RNA metabolic process;0.0017376134884661!GO:0043681;protein import into mitochondrion;0.00179383084220374!GO:0043284;biopolymer biosynthetic process;0.00179540857368723!GO:0019219;regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.00180160979981519!GO:0007050;cell cycle arrest;0.00189326576409061!GO:0030658;transport vesicle membrane;0.00199258609318108!GO:0003690;double-stranded DNA binding;0.00202187773704717!GO:0003682;chromatin binding;0.00214743932842062!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00221427097298623!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00221427097298623!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00221427097298623!GO:0004004;ATP-dependent RNA helicase activity;0.00245035454306216!GO:0040008;regulation of growth;0.00245818182699909!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.00252520806095004!GO:0045047;protein targeting to ER;0.00252520806095004!GO:0005741;mitochondrial outer membrane;0.00252520806095004!GO:0007052;mitotic spindle organization and biogenesis;0.00255289240765287!GO:0000079;regulation of cyclin-dependent protein kinase activity;0.00256502086106764!GO:0046474;glycerophospholipid biosynthetic process;0.00271435886991722!GO:0000082;G1/S transition of mitotic cell cycle;0.00293519057215106!GO:0030041;actin filament polymerization;0.00302811621658926!GO:0008094;DNA-dependent ATPase activity;0.00310866938619483!GO:0030521;androgen receptor signaling pathway;0.00311634281399374!GO:0030134;ER to Golgi transport vesicle;0.00314590894227608!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.00320932515294698!GO:0003684;damaged DNA binding;0.0032767653457141!GO:0046489;phosphoinositide biosynthetic process;0.0032767653457141!GO:0003746;translation elongation factor activity;0.00330449131563818!GO:0008312;7S RNA binding;0.0033058793652293!GO:0008154;actin polymerization and/or depolymerization;0.0035948238922106!GO:0048522;positive regulation of cellular process;0.00371537038075441!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.00374175479530699!GO:0007093;mitotic cell cycle checkpoint;0.00388339747230586!GO:0006839;mitochondrial transport;0.00389092331624575!GO:0042802;identical protein binding;0.00390136164597473!GO:0000059;protein import into nucleus, docking;0.00406463642077364!GO:0007264;small GTPase mediated signal transduction;0.00411997039273462!GO:0006402;mRNA catabolic process;0.00436340221082675!GO:0030880;RNA polymerase complex;0.00440936105004975!GO:0030127;COPII vesicle coat;0.00443126543634597!GO:0012507;ER to Golgi transport vesicle membrane;0.00443126543634597!GO:0003711;transcription elongation regulator activity;0.00449754505219468!GO:0009165;nucleotide biosynthetic process;0.00464083372324293!GO:0030660;Golgi-associated vesicle membrane;0.00466343554234696!GO:0051087;chaperone binding;0.00466343554234696!GO:0003702;RNA polymerase II transcription factor activity;0.00479602543862972!GO:0030176;integral to endoplasmic reticulum membrane;0.00483846772308482!GO:0005684;U2-dependent spliceosome;0.0050944954860567!GO:0006354;RNA elongation;0.0050944954860567!GO:0003678;DNA helicase activity;0.0052276892004513!GO:0030027;lamellipodium;0.00530026992635637!GO:0032774;RNA biosynthetic process;0.00530049995632153!GO:0008047;enzyme activator activity;0.00530049995632153!GO:0016706;oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors;0.00533141181202463!GO:0017166;vinculin binding;0.0053552962107896!GO:0006892;post-Golgi vesicle-mediated transport;0.00539328222120756!GO:0005869;dynactin complex;0.00543943721199227!GO:0051128;regulation of cellular component organization and biogenesis;0.00545949528037776!GO:0006310;DNA recombination;0.00555336809666426!GO:0051052;regulation of DNA metabolic process;0.00566714177158466!GO:0045045;secretory pathway;0.00583479386839501!GO:0031543;peptidyl-proline dioxygenase activity;0.00592883175755039!GO:0030132;clathrin coat of coated pit;0.00608769166327856!GO:0000226;microtubule cytoskeleton organization and biogenesis;0.00609605998958983!GO:0006351;transcription, DNA-dependent;0.00609605998958983!GO:0016044;membrane organization and biogenesis;0.0062136357480053!GO:0031124;mRNA 3'-end processing;0.0062136357480053!GO:0044262;cellular carbohydrate metabolic process;0.00636007327480156!GO:0008180;signalosome;0.00640681478709091!GO:0048487;beta-tubulin binding;0.00640681478709091!GO:0019798;procollagen-proline dioxygenase activity;0.00649638328516523!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.00677034769376249!GO:0015399;primary active transmembrane transporter activity;0.00677034769376249!GO:0046483;heterocycle metabolic process;0.00678049330845168!GO:0000049;tRNA binding;0.00679336022330515!GO:0045892;negative regulation of transcription, DNA-dependent;0.00679336022330515!GO:0000339;RNA cap binding;0.0068309681272239!GO:0043488;regulation of mRNA stability;0.00703885269650495!GO:0043487;regulation of RNA stability;0.00703885269650495!GO:0007088;regulation of mitosis;0.00711135214219399!GO:0030118;clathrin coat;0.00731157856707305!GO:0044452;nucleolar part;0.00731410343486969!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.00734635265742712!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.00734635265742712!GO:0007006;mitochondrial membrane organization and biogenesis;0.00739416007038165!GO:0003779;actin binding;0.00740031435107437!GO:0065009;regulation of a molecular function;0.00746558920433062!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.00746803129318608!GO:0000786;nucleosome;0.00752265596550509!GO:0000910;cytokinesis;0.00752265596550509!GO:0008022;protein C-terminus binding;0.00794853015535037!GO:0007243;protein kinase cascade;0.00812774043876397!GO:0006509;membrane protein ectodomain proteolysis;0.00833447075578102!GO:0033619;membrane protein proteolysis;0.00833447075578102!GO:0008139;nuclear localization sequence binding;0.00840956525277919!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.00854320861538924!GO:0000428;DNA-directed RNA polymerase complex;0.00854320861538924!GO:0031901;early endosome membrane;0.00858984459265711!GO:0006352;transcription initiation;0.00859597925817321!GO:0032984;macromolecular complex disassembly;0.0087723574483866!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.0089864888843178!GO:0005862;muscle thin filament tropomyosin;0.00914568545220229!GO:0043433;negative regulation of transcription factor activity;0.00928189433541043!GO:0001726;ruffle;0.00940927871519758!GO:0004177;aminopeptidase activity;0.00959310679938412!GO:0031418;L-ascorbic acid binding;0.00987657165641905!GO:0045792;negative regulation of cell size;0.00991020607527203!GO:0001527;microfibril;0.0100392314032258!GO:0009112;nucleobase metabolic process;0.0105740541672082!GO:0016272;prefoldin complex;0.0106608300763465!GO:0015992;proton transport;0.0110730917342302!GO:0030308;negative regulation of cell growth;0.0113185348116904!GO:0043624;cellular protein complex disassembly;0.0113458812853536!GO:0006818;hydrogen transport;0.0120480945606879!GO:0005876;spindle microtubule;0.0120648012697893!GO:0006401;RNA catabolic process;0.0121466874035532!GO:0030384;phosphoinositide metabolic process;0.0125050806649802!GO:0003756;protein disulfide isomerase activity;0.0126290646689271!GO:0016864;intramolecular oxidoreductase activity, transposing S-S bonds;0.0126290646689271!GO:0004527;exonuclease activity;0.0128476034716382!GO:0007017;microtubule-based process;0.0129043817160441!GO:0006595;polyamine metabolic process;0.0133726354243499!GO:0006650;glycerophospholipid metabolic process;0.013551102871575!GO:0008033;tRNA processing;0.013806495672429!GO:0007034;vacuolar transport;0.0138337600734156!GO:0030833;regulation of actin filament polymerization;0.0139722707410116!GO:0016251;general RNA polymerase II transcription factor activity;0.0140294397991387!GO:0005801;cis-Golgi network;0.0142757058836463!GO:0035258;steroid hormone receptor binding;0.0145039449800592!GO:0045449;regulation of transcription;0.0148469301841097!GO:0007021;tubulin folding;0.0154343589980737!GO:0043241;protein complex disassembly;0.015515565499635!GO:0008320;protein transmembrane transporter activity;0.0159027609560733!GO:0050681;androgen receptor binding;0.0160696928156837!GO:0006497;protein amino acid lipidation;0.0165815505545942!GO:0031123;RNA 3'-end processing;0.0168327201679031!GO:0031529;ruffle organization and biogenesis;0.0170192292536822!GO:0005832;chaperonin-containing T-complex;0.0171644883992607!GO:0043022;ribosome binding;0.017184957756158!GO:0006289;nucleotide-excision repair;0.0173975811567629!GO:0007059;chromosome segregation;0.0192397217757087!GO:0004674;protein serine/threonine kinase activity;0.0197260580870165!GO:0005637;nuclear inner membrane;0.0197544011522036!GO:0006368;RNA elongation from RNA polymerase II promoter;0.0202581668903336!GO:0017015;regulation of transforming growth factor beta receptor signaling pathway;0.0205824501781743!GO:0050811;GABA receptor binding;0.0206777351562646!GO:0031902;late endosome membrane;0.020694872239577!GO:0051493;regulation of cytoskeleton organization and biogenesis;0.0211699250323184!GO:0033043;regulation of organelle organization and biogenesis;0.0211699250323184!GO:0030518;steroid hormone receptor signaling pathway;0.0216026307652898!GO:0031625;ubiquitin protein ligase binding;0.0217937306603064!GO:0019206;nucleoside kinase activity;0.0218154572223182!GO:0008064;regulation of actin polymerization and/or depolymerization;0.0222799246960039!GO:0045893;positive regulation of transcription, DNA-dependent;0.0227998152964389!GO:0009116;nucleoside metabolic process;0.0228922170931173!GO:0000922;spindle pole;0.0230581457797938!GO:0007179;transforming growth factor beta receptor signaling pathway;0.0232095534743531!GO:0000209;protein polyubiquitination;0.024042840594413!GO:0006506;GPI anchor biosynthetic process;0.0246065370435916!GO:0007030;Golgi organization and biogenesis;0.0247339955554366!GO:0030659;cytoplasmic vesicle membrane;0.0247339955554366!GO:0051045;negative regulation of membrane protein ectodomain proteolysis;0.0247339955554366!GO:0051043;regulation of membrane protein ectodomain proteolysis;0.0247339955554366!GO:0022890;inorganic cation transmembrane transporter activity;0.0250545239504194!GO:0048468;cell development;0.0253013508623681!GO:0035035;histone acetyltransferase binding;0.0258656190367628!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.0259634657477297!GO:0015002;heme-copper terminal oxidase activity;0.0259634657477297!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.0259634657477297!GO:0004129;cytochrome-c oxidase activity;0.0259634657477297!GO:0016667;oxidoreductase activity, acting on sulfur group of donors;0.0259634657477297!GO:0030496;midbody;0.0261032054191322!GO:0006376;mRNA splice site selection;0.0264756688196823!GO:0000389;nuclear mRNA 3'-splice site recognition;0.0264756688196823!GO:0022408;negative regulation of cell-cell adhesion;0.0266934140195492!GO:0005665;DNA-directed RNA polymerase II, core complex;0.0269799411621381!GO:0030125;clathrin vesicle coat;0.0270022576308743!GO:0030665;clathrin coated vesicle membrane;0.0270022576308743!GO:0005856;cytoskeleton;0.0270625928936281!GO:0051101;regulation of DNA binding;0.0274833640101718!GO:0016627;oxidoreductase activity, acting on the CH-CH group of donors;0.0277187231997199!GO:0006144;purine base metabolic process;0.0284061295768008!GO:0030032;lamellipodium biogenesis;0.0285071257008118!GO:0030865;cortical cytoskeleton organization and biogenesis;0.0292157519622461!GO:0006378;mRNA polyadenylation;0.0292157519622461!GO:0045935;positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.0298238176275441!GO:0006979;response to oxidative stress;0.0302205834265202!GO:0006740;NADPH regeneration;0.0304434743784429!GO:0006098;pentose-phosphate shunt;0.0304434743784429!GO:0016408;C-acyltransferase activity;0.0304473559542454!GO:0004003;ATP-dependent DNA helicase activity;0.0306207845237279!GO:0006505;GPI anchor metabolic process;0.031112016532529!GO:0006611;protein export from nucleus;0.031112016532529!GO:0045941;positive regulation of transcription;0.0311949797603816!GO:0051287;NAD binding;0.0318437078354349!GO:0000307;cyclin-dependent protein kinase holoenzyme complex;0.0330799148275932!GO:0005096;GTPase activator activity;0.0330906789978644!GO:0032508;DNA duplex unwinding;0.0332354698797961!GO:0032392;DNA geometric change;0.0332354698797961!GO:0005784;translocon complex;0.0343979752565778!GO:0000122;negative regulation of transcription from RNA polymerase II promoter;0.0343979752565778!GO:0031371;ubiquitin conjugating enzyme complex;0.0343983895100091!GO:0000118;histone deacetylase complex;0.0344005456245831!GO:0007041;lysosomal transport;0.034484923961363!GO:0004656;procollagen-proline 4-dioxygenase activity;0.0353847844152954!GO:0031545;peptidyl-proline 4-dioxygenase activity;0.0353847844152954!GO:0016126;sterol biosynthetic process;0.0356369058321962!GO:0043130;ubiquitin binding;0.0358949458821983!GO:0032182;small conjugating protein binding;0.0358949458821983!GO:0006984;ER-nuclear signaling pathway;0.0364978101353737!GO:0033673;negative regulation of kinase activity;0.0371200804663437!GO:0006469;negative regulation of protein kinase activity;0.0371200804663437!GO:0019205;nucleobase, nucleoside, nucleotide kinase activity;0.0372368818594123!GO:0006607;NLS-bearing substrate import into nucleus;0.0375258316574515!GO:0043492;ATPase activity, coupled to movement of substances;0.0376144396608959!GO:0008017;microtubule binding;0.0376144396608959!GO:0032940;secretion by cell;0.0379358994608581!GO:0006405;RNA export from nucleus;0.0390221915039322!GO:0000086;G2/M transition of mitotic cell cycle;0.0390221915039322!GO:0046467;membrane lipid biosynthetic process;0.0401979891886347!GO:0045926;negative regulation of growth;0.0402647396429179!GO:0016584;nucleosome positioning;0.040278723988074!GO:0030119;AP-type membrane coat adaptor complex;0.0407087683685907!GO:0030508;thiol-disulfide exchange intermediate activity;0.0408641750124722!GO:0030433;ER-associated protein catabolic process;0.0413347764187402!GO:0006515;misfolded or incompletely synthesized protein catabolic process;0.0413347764187402!GO:0003923;GPI-anchor transamidase activity;0.0415606337768922!GO:0016255;attachment of GPI anchor to protein;0.0415606337768922!GO:0042765;GPI-anchor transamidase complex;0.0415606337768922!GO:0005669;transcription factor TFIID complex;0.0419804319232832!GO:0042168;heme metabolic process;0.0424198345050976!GO:0001725;stress fiber;0.0424198345050976!GO:0032432;actin filament bundle;0.0424198345050976!GO:0032200;telomere organization and biogenesis;0.0426554376777753!GO:0000723;telomere maintenance;0.0426554376777753!GO:0007040;lysosome organization and biogenesis;0.044232350358983!GO:0006007;glucose catabolic process;0.0447027403833016!GO:0008234;cysteine-type peptidase activity;0.0449179487594237!GO:0042158;lipoprotein biosynthetic process;0.0462138752469598!GO:0051348;negative regulation of transferase activity;0.0470479865070765!GO:0007178;transmembrane receptor protein serine/threonine kinase signaling pathway;0.0470479865070765!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.0470479865070765!GO:0008632;apoptotic program;0.0472931448774427!GO:0022411;cellular component disassembly;0.0473864873892062!GO:0006778;porphyrin metabolic process;0.0475472351539915!GO:0033013;tetrapyrrole metabolic process;0.0475472351539915!GO:0008652;amino acid biosynthetic process;0.0475472351539915!GO:0042770;DNA damage response, signal transduction;0.0477445245368312!GO:0006275;regulation of DNA replication;0.0483602989281608!GO:0043161;proteasomal ubiquitin-dependent protein catabolic process;0.0483865934042806!GO:0002763;positive regulation of myeloid leukocyte differentiation;0.0485444108663274!GO:0042585;germinal vesicle;0.048700198273976!GO:0017134;fibroblast growth factor binding;0.048700198273976!GO:0008601;protein phosphatase type 2A regulator activity;0.0488257778609803!GO:0006220;pyrimidine nucleotide metabolic process;0.0489761655317747!GO:0008475;procollagen-lysine 5-dioxygenase activity;0.0494141306555511!GO:0047485;protein N-terminus binding;0.0495105752609673!GO:0051271;negative regulation of cell motility;0.0496447319862804!GO:0001953;negative regulation of cell-matrix adhesion;0.0497385998766986!GO:0005758;mitochondrial intermembrane space;0.0497385998766986
+|sample_id=11561
+|sample_note=Originally library704 tailing failed, the remaining sample is being rerun
+|sample_sex=M
+|sample_species=Human (Homo sapiens)
+|sample_strain=
+|sample_tissue=skin
+|top_motifs=GZF1:1.6185396237;HBP1_HMGB_SSRP1_UBTF:1.57553994505;XBP1:1.56002937443;ALX4:1.43281934621;HIF1A:1.41439384866;ZNF238:1.40356258798;ESR1:1.33774108124;HES1:1.29132962851;GCM1,2:1.25078969228;PAX1,9:1.25075452774;KLF4:1.23026255981;SRF:1.13106501939;PPARG:1.10957394869;HMX1:1.10553826731;UFEwm:1.09458044841;TFAP4:1.08288672155;NKX3-1:1.07953369706;EN1,2:1.07838752023;RXR{A,B,G}:1.07641916309;SMAD1..7,9:1.06784539207;MAFB:1.04425043014;HOX{A5,B5}:1.00400123687;TEAD1:1.00110250874;NR3C1:0.999207463955;GFI1B:0.99426382889;NKX3-2:0.970093693639;NANOG{mouse}:0.969958924815;GFI1:0.947707408308;NFIX:0.941709706581;NKX2-2,8:0.935619702443;HSF1,2:0.919098400815;EBF1:0.89721990979;TP53:0.889812718633;HMGA1,2:0.882350922959;NFE2L1:0.855160437508;RXRA_VDR{dimer}:0.815813046991;SOX17:0.796915108663;MZF1:0.787120406379;ZIC1..3:0.764412553781;GTF2I:0.724361178071;PRDM1:0.711159280806;GTF2A1,2:0.704841909373;MYBL2:0.700620116157;MAZ:0.692746987586;MYB:0.684621911892;EP300:0.658697624632;TLX1..3_NFIC{dimer}:0.623658241796;HAND1,2:0.619200921582;TAL1_TCF{3,4,12}:0.600605705107;IKZF1:0.596875434265;SPZ1:0.587367198565;MTE{core}:0.581664187151;PAX8:0.56567694152;EVI1:0.53299454628;STAT1,3:0.528035789737;ZBTB6:0.503283957686;ZNF148:0.478737894686;TFCP2:0.473371930388;NFATC1..3:0.472572490061;NR1H4:0.462618600816;TFAP2B:0.460608754081;ELK1,4_GABP{A,B1}:0.452754847939;GLI1..3:0.440549205116;ATF6:0.438992986022;YY1:0.435377896867;GATA4:0.419580098037;T:0.417760433088;TFDP1:0.416142597683;FOXL1:0.395200347171;HOX{A4,D4}:0.366657604092;XCPE1{core}:0.358079529351;LHX3,4:0.337295243993;TBP:0.322391507069;PATZ1:0.315288692123;TBX4,5:0.274044849326;HLF:0.25865125089;POU5F1:0.237852365726;NFE2L2:0.236257004527;ZNF143:0.232070934176;NR5A1,2:0.226253795708;LEF1_TCF7_TCF7L1,2:0.215613525344;PAX5:0.205445503169;E2F1..5:0.199769414199;MEF2{A,B,C,D}:0.197111014379;BACH2:0.192119942522;CEBPA,B_DDIT3:0.184867466239;POU3F1..4:0.183921638983;FOX{I1,J2}:0.167828262594;AHR_ARNT_ARNT2:0.151137556496;NRF1:0.149565107795;TFAP2{A,C}:0.146597025411;RREB1:0.141426986984;STAT2,4,6:0.110232617197;ZNF384:0.0795578546486;SOX5:0.0681078453208;MTF1:0.0473235146862;HOX{A6,A7,B6,B7}:0.0278141996716;TOPORS:0.0243060761048;TLX2:0.0212360258841;ZNF423:-0.00617170533067;CRX:-0.0158377884646;ARID5B:-0.0306401941938;FOS_FOS{B,L1}_JUN{B,D}:-0.0337321543535;FOSL2:-0.0400965680893;PRRX1,2:-0.0410910299501;NKX6-1,2:-0.0547510024879;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.0810392412786;NHLH1,2:-0.105543944026;NFE2:-0.115006553804;NR6A1:-0.122322607847;TEF:-0.124422760868;NFY{A,B,C}:-0.129519459607;NKX2-3_NKX2-5:-0.132036687028;ELF1,2,4:-0.138173605731;CREB1:-0.139014696931;PDX1:-0.145853351247;MED-1{core}:-0.148425610542;FOXA2:-0.159740764229;SOX2:-0.164205835174;DMAP1_NCOR{1,2}_SMARC:-0.166067985954;DBP:-0.176961352702;CDC5L:-0.189104061675;EGR1..3:-0.190741951129;JUN:-0.205397191826;HNF1A:-0.22869689139;RUNX1..3:-0.250622835785;RFX1:-0.254660384981;MYFfamily:-0.254983836067;HIC1:-0.262717939774;ALX1:-0.275701708168;SPI1:-0.286035894939;TGIF1:-0.298587026715;REST:-0.301340562502;POU1F1:-0.304678524339;ESRRA:-0.336867720115;PAX3,7:-0.338834609226;FOXN1:-0.357324070565;AR:-0.357570654439;ATF5_CREB3:-0.3704951865;NFIL3:-0.382877695796;FOX{D1,D2}:-0.398438783384;FOXQ1:-0.398920805826;ETS1,2:-0.403655260949;PBX1:-0.404061258951;OCT4_SOX2{dimer}:-0.419653175085;PAX2:-0.433586419752;IRF1,2:-0.439831884577;FOXP3:-0.442291485031;PAX4:-0.449656845622;BPTF:-0.451312142366;POU6F1:-0.451432517029;NFKB1_REL_RELA:-0.46309387665;VSX1,2:-0.463750036222;HNF4A_NR2F1,2:-0.470330925729;SOX{8,9,10}:-0.485254528848;SP1:-0.488390803186;ATF4:-0.500106885691;FOXM1:-0.511019297149;NKX2-1,4:-0.523125892974;NANOG:-0.526729582386;FOXO1,3,4:-0.527312639203;SPIB:-0.540750930698;ZFP161:-0.556903548326;AIRE:-0.563884486376;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.57446344148;BREu{core}:-0.611862327264;SREBF1,2:-0.628966551003;PAX6:-0.643580085175;GATA6:-0.666574710017;PITX1..3:-0.671978598406;ADNP_IRX_SIX_ZHX:-0.673152639837;POU2F1..3:-0.686171251239;ONECUT1,2:-0.717039765611;CUX2:-0.722113536321;IRF7:-0.727868122444;FOXP1:-0.737155719241;FOXD3:-0.748562009164;ATF2:-0.807219691694;STAT5{A,B}:-0.808873921529;ZEB1:-0.809776109289;SNAI1..3:-0.838034663357;RBPJ:-0.909053426662;bHLH_family:-0.909884027654;IKZF2:-0.935168288759;ZBTB16:-0.955888201495;RFX2..5_RFXANK_RFXAP:-0.961938816436;CDX1,2,4:-1.07511426357;HOXA9_MEIS1:-1.08377961013;FOX{F1,F2,J1}:-1.12864018461;RORA:-1.15946108508;LMO2:-1.27660418376;MYOD1:-1.65231384015
+|xref=
+|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11561-120D4;search_select_hide=table117:FF:11561-120D4
 }}

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FF:11561-120D4: Difference between revisions

From FANTOM5_SSTAR

Latest revision as of 18:09, 4 June 2020

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	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0