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{{f5samples
{{f5samples
|id=FF:11561-120D4
|DRA_sample_Accession=CAGE@SAMD00004977
|name=Fibroblast - skin normal, donor2
|accession_numbers=CAGE;DRX008288;DRR009160;DRZ000585;DRZ001970;DRZ011935;DRZ013320
|sample_id=11561
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0002097,UBERON:0002199,UBERON:0002384,UBERON:0000479,UBERON:0000062,UBERON:0000061,UBERON:0000465,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0003102,UBERON:0002416
|rna_tube_id=120D4
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0002320,CL:0002371,CL:0000255,CL:0000057,CL:0002620
|rna_box=120
|rna_position=D4
|sample_cell_lot=GM00498
|sample_cell_catalog=N/A
|sample_company=Coriell
|rna_lot_number=
|rna_catalog_number=custom
|sample_species=Human (Homo sapiens)
|sample_strain=
|sample_dev_stage=
|sample_tissue=skin
|sample_donor(cell lot)=
|sample_sex=M
|sample_age=3 year old child
|sample_ethnicity=U
|rna_rin=
|rna_od260/230=1.96
|rna_od260/280=2.09
|sample_cell_type=fibroblast
|sample_cell_line=
|sample_collaboration=Splicing (contact: Al Forrest)
|sample_experimental_condition=
|sample_disease=APPARENTLY HEALTHY NON-FETAL T
|rna_sample_type=total RNA
|rna_extraction_protocol=OP-RNA-extraction-totalRNA-TRIzol-ethanol-v1.0
|rna_weight_ug=134.8569
|rna_concentration=0.999
|sample_note=Originally library704 tailing failed, the remaining sample is being rerun
|profile_hcage=Cnhs11914,LSID842,release014,COMPLETED
|profile_cagescan=,,,
|profile_srnaseq=,,,
|profile_rnaseq=,,,
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000004,CL:0000012,CL:0000034,CL:0000048,CL:0000055,CL:0000057,CL:0000063,CL:0000134,CL:0000144,CL:0000219,CL:0000255,CL:0000548,CL:0000723,CL:0002320,CL:0002371,CL:0002620
|ancestors_in_anatomy_facet=UBERON:0000061,UBERON:0000062,UBERON:0000465,UBERON:0000467,UBERON:0000468,UBERON:0000475,UBERON:0000479,UBERON:0000480,UBERON:0001062,UBERON:0002097,UBERON:0002199,UBERON:0002384,UBERON:0002416,UBERON:0003102
|ancestors_in_disease_facet=
|ancestors_in_disease_facet=
|sample_description=
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000057,FF:0000250,FF:0000001
|comment=
|created_by=
|creation_date=
|data_phase=2
|datafreeze_phase=2
|def=
|expression_enrichment_score=chr12:54410664..54410684,+!p1@HOXC4,p1@HOXC5,p1@HOXC6!2.11!126.86!HOXC5;;chr9:132427883..132427951,+!p2@PRRX2!1.81!64.02!PRRX2;;chr7:19157248..19157268,-!p1@TWIST1!1.80!166.23!TWIST1;;chr1:170632285..170632309,+!p1@PRRX1!1.72!58.46!PRRX1;;chr1:197886461..197886558,+!p1@LHX9!1.72!52.03!LHX9;;chr9:132427972..132428056,+!p1@PRRX2!1.69!62.16!PRRX2;;chr1:170633348..170633399,+!p2@PRRX1!1.67!60.90!PRRX1;;chr17:46682321..46682362,-!p1@HOXB6!1.48!29.13!HOXB6;;chr12:54402745..54402788,+!p1@HOXC8!1.45!27.38!HOXC8;;chr10:119303078..119303169,+!p2@EMX2!1.45!27.28!EMX2;;chr11:46299199..46299233,+!p1@CREB3L1!1.41!124.52!CREB3L1;;chr1:170633262..170633285,+!p3@PRRX1!1.34!23.87!PRRX1;;chr19:47523058..47523114,+!p1@NPAS1!1.33!20.46!NPAS1;;chr5:72744594..72744609,-!p1@FOXD1!1.31!87.01!FOXD1;;chr12:54379029..54379057,+!p2@HOXC10!1.31!19.39!HOXC10;;chr6:19837592..19837621,+!p1@ID4!1.30!112.73!ID4;;chr19:13134772..13134822,+!p2@NFIX!1.30!27.87!NFIX;;chr15:57511609..57511651,+!p2@TCF12!1.26!28.55!TCF12;;chr6:10415276..10415341,-!p2@TFAP2A!1.26!20.85!TFAP2A;;chr6:134210243..134210257,+!p1@TCF21!1.26!17.34!TCF21;;chr1:209979467..209979494,-!p1@IRF6!1.25!18.81!IRF6;;chr12:54393880..54393962,+!p1@HOXC9!1.25!16.76!HOXC9;;chr1:170633058..170633084,+!p5@PRRX1!1.21!15.40!PRRX1;;chr2:239756739..239756755,+!p2@TWIST2!1.20!25.53!TWIST2;;chr12:54410639..54410659,+!p2@HOXC4,p2@HOXC5,p2@HOXC6!1.19!14.62!HOXC5;;chr5:2751762..2751784,-!p1@IRX2!1.17!13.74!IRX2;;chr11:46299539..46299620,+!p2@CREB3L1!1.16!22.80!CREB3L1;;chr5:72744445..72744466,-!p2@FOXD1!1.16!22.22!FOXD1;;chr1:170632959..170632987,+!p4@PRRX1!1.14!13.93!PRRX1;;chr6:10412600..10412637,-!p1@TFAP2A!1.13!20.66!TFAP2A;;chr12:54378923..54378966,+!p1@HOXC10!1.13!12.57!HOXC10;;chr12:54380404..54380433,+!p3@HOXC10!1.12!12.28!HOXC10;;chr2:119605214..119605230,-!p1@EN1!1.09!11.40!EN1;;chr17:46667594..46667619,-!p1@HOXB3!1.08!11.01!HOXB3;;chr2:176994408..176994492,+!p1@HOXD8!1.04!10.04!HOXD8;;chr2:239756671..239756732,+!p1@TWIST2!1.03!31.47!TWIST2;;chr4:111558135..111558198,-!p2@PITX2!1.02!9.55!PITX2;;chr4:174450089..174450153,-!p2@HAND2!1.02!9.45!HAND2;;chr1:170632477..170632506,+!p6@PRRX1!1.01!9.26!PRRX1;;chrY:21906594..21906622,-!p1@KDM5D!1.01!9.16!KDM5D;;chr1:170632723..170632739,+!p8@PRRX1!1.00!9.06!PRRX1;;chr12:53614115..53614154,-!p1@RARG!0.99!47.84!RARG;;chr8:49833948..49833973,-!p2@SNAI2!0.98!55.83!SNAI2;;chr4:4861385..4861398,+!p1@MSX1!0.97!25.43!MSX1;;chr16:54964740..54964789,+!p1@IRX5!0.96!11.98!IRX5;;chr18:53068911..53068935,-!p4@TCF4!0.95!9.06!TCF4;;chr3:128206762..128206781,-!p2@GATA2!0.94!50.08!GATA2;;chr2:85981107..85981120,+!p3@ATOH8!0.94!7.79!ATOH8;;chr7:27192185..27192209,-!p1@HOXA3!0.93!7.50!HOXA3;;chr19:50432453..50432468,+!p1@ATF5!0.92!430.57!ATF5;;chr1:170632250..170632277,+!p7@PRRX1!0.92!7.31!PRRX1;;chr10:114889045..114889074,+!p12@TCF7L2!0.92!7.31!TCF7L2;;chr12:54402729..54402743,+!p3@HOXC8!0.91!7.11!HOXC8;;chr5:72744562..72744573,-!p3@FOXD1!0.90!8.87!FOXD1;;chr1:23885981..23886002,-!p1@ID3!0.89!1251.09!ID3;;chr2:85980951..85981004,+!p1@ATOH8!0.88!11.01!ATOH8;;chr1:170632137..170632172,+!p10@PRRX1!0.87!6.43!PRRX1;;chr2:223163706..223163730,-!p1@PAX3!0.86!6.24!PAX3;;chr12:54380036..54380091,+!p4@HOXC10!0.86!6.24!HOXC10;;chr10:114710244..114710257,+!p3@TCF7L2!0.85!17.15!TCF7L2;;chr1:200379104..200379128,-!p2@ZNF281!0.85!15.40!ZNF281;;chr21:36260773..36260804,-!p7@RUNX1!0.85!8.38!RUNX1;;chr10:119302645..119302712,+!p3@EMX2!0.85!6.04!EMX2;;chr7:27205136..27205164,-!p1@HOXA9!0.85!6.04!HOXA9;;chr16:54320617..54320643,-!p3@IRX3!0.84!7.79!IRX3;;chr7:27224842..27224872,-!p1@HOXA11!0.84!5.94!HOXA11;;chr1:170632439..170632465,+!p11@PRRX1!0.83!5.75!PRRX1;;chrY:2803415..2803468,+!p1@ZFY!0.83!5.75!ZFY;;chr8:49833978..49833996,-!p1@SNAI2!0.82!123.06!SNAI2;;chr12:54402790..54402805,+!p2@HOXC8!0.82!5.65!HOXC8;;chr2:172949484..172949522,+!p1@DLX1!0.82!5.55!DLX1;;chr4:174451370..174451387,-!p1@HAND2!0.82!5.55!HAND2;;chr7:27205106..27205134,-!p2@HOXA9!0.81!5.46!HOXA9;;chr19:13135386..13135435,+!p4@NFIX!0.80!5.36!NFIX;;chr15:37392534..37392562,-!p10@MEIS2!0.79!5.75!MEIS2;;chr15:37390482..37390572,-!p7@MEIS2!0.78!7.21!MEIS2;;chr10:119302508..119302559,+!p5@EMX2!0.78!4.97!EMX2;;chr2:8822176..8822196,+!p1@ID2!0.77!763.71!ID2;;chr10:63809106..63809127,+!p1@ARID5B!0.77!73.08!ARID5B;;chr19:13135582..13135600,+!p3@NFIX!0.77!4.87!NFIX;;chr2:119604456..119604501,-!p2@EN1!0.77!4.87!EN1;;chr12:80085061..80085119,-!p6@PAWR!0.76!7.89!PAWR;;chr8:67525443..67525459,-!p2@MYBL1!0.76!7.31!MYBL1;;chr13:37494275..37494304,-!p2@SMAD9!0.76!4.77!SMAD9;;chr2:85981073..85981091,+!p5@ATOH8!0.75!4.68!ATOH8;;chr15:37392616..37392638,-!p2@MEIS2!0.74!15.30!MEIS2;;chr20:51588873..51588953,+!p1@TSHZ2!0.74!6.14!TSHZ2;;chr2:172967242..172967265,-!p2@DLX2!0.74!4.48!DLX2;;chr5:2751785..2751808,-!p2@IRX2!0.74!4.48!IRX2;;chr15:37390850..37390909,-!p3@MEIS2!0.73!9.16!MEIS2;;chr17:46667628..46667642,-!p2@HOXB3!0.73!4.38!HOXB3;;chr1:170632683..170632696,+!p12@PRRX1!0.73!4.38!PRRX1;;chr20:48599506..48599526,+!p1@SNAI1!0.72!30.50!SNAI1;;chr5:72743793..72743855,-!p4@FOXD1!0.72!5.07!FOXD1;;chr17:46675420..46675465,-!p3@HOXB6!0.72!4.97!HOXB6;;chr20:30193083..30193098,+!p1@ID1!0.71!379.52!ID1;;chr7:44143925..44143970,+!p1@AEBP1!0.71!104.45!AEBP1;;chr6:85473156..85473210,-!p2@TBX18!0.71!5.16!TBX18;;chr1:170632115..170632136,+!p9@PRRX1!0.71!4.09!PRRX1;;chr3:52001448..52001478,-!p2@PCBP4!0.70!64.02!PCBP4;;chr15:37390374..37390422,-!p9@MEIS2!0.70!5.07!MEIS2;;chr17:46690839..46690884,-!p1@HOXB8!0.70!3.99!HOXB8;;chr2:102091566..102091581,-!p1@RFX8!0.70!3.99!RFX8;;chr10:77161504..77161530,-!p1@ZNF503!0.69!59.05!ZNF503;;chr5:321810..321877,+!p1@AHRR!0.69!13.93!AHRR;;chr1:158979872..158979898,+!p3@IFI16!0.69!13.25!IFI16;;chr7:44143978..44143989,+!p2@AEBP1!0.69!7.70!AEBP1;;chr11:65686802..65686818,+!p6@DRAP1!0.69!7.21!DRAP1;;chr16:54320646..54320672,-!p2@IRX3!0.69!6.33!IRX3;;chr15:83953397..83953425,-!p1@BNC1!0.69!4.58!BNC1;;chr14:75894714..75894733,+!p1@JDP2!0.68!124.52!JDP2;;chr6:144329384..144329405,-!p1@PLAGL1!0.68!50.96!PLAGL1;;chr15:37392724..37392757,-!p1@MEIS2!0.68!19.49!MEIS2;;chr17:46687959..46688007,-!p2@HOXB7!0.68!5.46!HOXB7;;chr6:1389789..1389821,+!p1@FOXF2!0.68!5.46!FOXF2;;chr16:31076332..31076388,-!p3@ZNF668!0.68!3.80!ZNF668;;chr1:119530493..119530572,-!p1@TBX15!0.68!3.80!TBX15;;chr10:63809013..63809041,+!p3@ARID5B!0.67!23.48!ARID5B;;chr11:12696071..12696086,+!p3@TEAD1!0.67!5.07!TEAD1;;chr1:2985760..2985774,+!p1@PRDM16!0.67!3.70!PRDM16;;chr12:124873357..124873401,-!p1@NCOR2!0.66!47.65!NCOR2;;chr11:65687362..65687436,+!p3@DRAP1!0.66!18.61!DRAP1;;chr11:65686732..65686756,+!p2@DRAP1!0.66!17.25!DRAP1;;chr8:106330656..106330684,+!p1@ZFPM2!0.66!10.43!ZFPM2;;chr7:27224795..27224840,-!p2@HOXA11!0.66!3.61!HOXA11;;chr16:54320675..54320715,-!p1@IRX3!0.65!8.18!IRX3;;chr19:31840130..31840160,-!p2@TSHZ3!0.65!5.75!TSHZ3;;chr17:46688334..46688385,-!p1@HOXB7!0.65!5.26!HOXB7;;chr19:13136130..13136165,+!p6@NFIX!0.65!4.87!NFIX;;chr2:172967276..172967296,-!p3@DLX2!0.65!3.51!DLX2;;chr10:119302232..119302265,+!p1@EMX2!0.65!3.51!EMX2;;chr12:54394309..54394336,+!p2@HOXC9!0.65!3.51!HOXC9;;chr2:85981222..85981259,+!p2@ATOH8!0.64!5.94!ATOH8;;chr11:46299186..46299195,+!p3@CREB3L1!0.64!3.90!CREB3L1;;chr13:37494248..37494260,-!p3@SMAD9!0.64!3.41!SMAD9;;chr1:170633194..170633205,+!p18@PRRX1!0.64!3.41!PRRX1;;chr2:172950227..172950249,+!p2@DLX1!0.64!3.41!DLX1;;chr2:85980768..85980783,+!p10@ATOH8!0.64!3.41!ATOH8;;chr3:128212033..128212051,-!p1@GATA2!0.64!3.41!GATA2;;chr6:10412576..10412599,-!p5@TFAP2A!0.64!3.41!TFAP2A;;chr7:27213893..27213954,-!p1@HOXA10!0.64!3.41!HOXA10;;chr14:24837368..24837401,+!p1@NFATC4!0.63!8.67!NFATC4;;chr15:37391588..37391604,-!p11@MEIS2!0.63!4.38!MEIS2;;chr12:54410948..54410992,+!p3@HOXC5!0.63!3.31!HOXC5;;chr2:102091144..102091183,-!p2@RFX8!0.63!3.31!RFX8;;chr2:177001290..177001315,+!p1@HOXD3!0.63!3.31!HOXD3;;chr7:44143997..44144008,+!p3@AEBP1!0.62!4.19!AEBP1;;chr14:62162258..62162269,+!p2@HIF1A!0.61!35.08!HIF1A;;chr16:54320101..54320125,-!p4@IRX3!0.61!4.68!IRX3;;chr2:119605056..119605071,-!p10@EN1!0.61!3.12!EN1;;chr5:88081308..88081333,-!p8@MEF2C!0.61!3.12!MEF2C;;chr1:170632907..170632916,+!p22@PRRX1!0.61!3.12!PRRX1;;chr15:37392576..37392589,-!p12@MEIS2!0.60!3.80!MEIS2;;chr16:86612320..86612394,+!p1@FOXL1!0.60!3.02!FOXL1;;chr1:197886665..197886732,+!p3@LHX9!0.60!3.02!LHX9;;chr2:172967621..172967637,-!p1@DLX2!0.59!8.96!DLX2;;chr11:65687222..65687240,+!p7@DRAP1!0.59!3.90!DRAP1;;chr10:114889016..114889037,+!p15@TCF7L2!0.59!2.92!TCF7L2;;chr12:54380112..54380126,+!p5@HOXC10!0.59!2.92!HOXC10;;chr8:93074803..93074845,-!p1@RUNX1T1!0.59!2.92!RUNX1T1;;chr19:13106214..13106382,+!p1@NFIX!0.58!79.41!NFIX;;chrX:106960180..106960197,-!p2@TSC22D3!0.58!12.57!TSC22D3;;chr7:19157043..19157088,-!p2@TWIST1!0.58!8.18!TWIST1;;chr13:37494365..37494381,-!p1@SMAD9!0.58!5.46!SMAD9;;chr19:50435736..50435781,+!p3@ATF5!0.58!4.09!ATF5;;chr17:46691732..46691766,-!p4@HOXB8!0.58!2.83!HOXB8;;chr12:114843940..114843955,-!p2@TBX5!0.58!2.83!TBX5;;chr12:54394416..54394467,+!p5@HOXC9!0.58!2.83!HOXC9;;chr18:53257001..53257015,-!p5@TCF4!0.57!5.16!TCF4;;chr2:85980919..85980942,+!p4@ATOH8!0.57!2.92!ATOH8;;chr2:172967323..172967336,-!p4@DLX2!0.57!2.73!DLX2;;chr12:54384370..54384382,+!p5@HOXC6!0.57!2.73!HOXC6;;chr12:54378984..54378996,+!p7@HOXC10!0.56!2.63!HOXC10;;chr1:170632867..170632878,+!p21@PRRX1!0.56!2.63!PRRX1;;chr2:172967353..172967365,-!p5@DLX2!0.56!2.63!DLX2;;chr2:85981027..85981047,+!p8@ATOH8!0.56!2.63!ATOH8;;chr17:70117153..70117174,+!p1@SOX9!0.55!32.64!SOX9;;chr7:42276787..42276815,-!p1@GLI3!0.55!7.99!GLI3;;chr5:139492456..139492489,+!p7@PURA!0.55!2.53!PURA;;chr2:85981008..85981025,+!p7@ATOH8!0.55!2.53!ATOH8;;chr11:46299443..46299459,+!p4@CREB3L1!0.55!2.53!CREB3L1;;chr1:2985726..2985752,+!p2@PRDM16!0.55!2.53!PRDM16;;chr11:46333934..46333963,+!p5@CREB3L1!0.54!2.44!CREB3L1;;chr15:57511589..57511608,+!p4@TCF12!0.54!2.44!TCF12;;chr3:114343768..114343822,-!p1@ZBTB20!0.53!13.06!ZBTB20;;chr3:71630980..71631110,-!p3@FOXP1!0.52!9.94!FOXP1;;chr2:6666228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V5!0.18!4.38!ETV5;;chr19:53758094..53758147,-!p1@ZNF677!0.18!4.38!ZNF677;;chr19:45251805..45251840,+!p4@BCL3!0.18!3.51!BCL3;;chr16:1429627..1429662,-!p2@UNKL!0.18!3.22!UNKL;;chr19:21106081..21106115,+!p2@ZNF85!0.18!3.22!ZNF85;;chr6:126102254..126102289,+!p5@NCOA7!0.18!3.02!NCOA7;;chr19:33864571..33864596,+!p2@CEBPG!0.18!2.53!CEBPG;;chr13:74708372..74708409,-!p4@KLF12!0.18!2.34!KLF12;;chr11:62369383..62369399,-!p6@MTA2!0.18!2.24!MTA2;;chr16:3285049..3285081,-!p3@ZNF200!0.18!2.24!ZNF200;;chr10:44144264..44144286,-!p2@ZNF32!0.18!2.14!ZNF32;;chr9:99180617..99180658,-!p1@ZNF367!0.18!2.14!ZNF367;;chr1:25256756..25256774,-!p1@RUNX3!0.18!1.75!RUNX3;;chr3:150126904..150126958,+!p7@TSC22D2!0.18!1.56!TSC22D2;;chr4:56413067..56413086,-!p4@CLOCK!0.18!1.56!CLOCK;;chr18:42260059..42260132,+!p1@SETBP1!0.18!1.46!SETBP1;;chr1:151431811..151431832,-!p3@POGZ!0.18!1.46!POGZ;;chr6:28235131..28235151,+!p2@ZNF187!0.18!1.07!ZNF187;;chr16:4365715..4365746,+!p@chr16:4365715..4365746,+!0.18!0.97!GLIS2;;chr17:7370612..7370625,-!p9@ZBTB4!0.18!0.88!ZBTB4;;chr19:31840438..31840470,-!p3@TSHZ3!0.18!0.88!TSHZ3;;chr12:80083544..80083558,-!p13@PAWR!0.18!0.88!PAWR;;chr9:117150303..117150312,-!p3@AKNA!0.18!0.88!AKNA;;chr7:77428248..77428259,+!p5@PHTF2!0.18!0.68!PHTF2;;chr9:128509857..128509872,+!p6@PBX3!0.18!0.68!PBX3;;chr4:146860163..146860188,-!p5@ZNF827!0.18!0.68!ZNF827;;chr3:37217756..37217844,-!p1@LRRFIP2!0.17!85.55!LRRFIP2;;chr2:176032843..176032941,-!p1@ATF2!0.17!55.34!ATF2;;chr19:36705998..36706021,+!p2@ZNF146!0.17!18.71!ZNF146;;chr17:47492236..47492251,-!p1@PHB!0.17!17.93!PHB;;chr19:3359591..3359667,+!p2@NFIC!0.17!14.62!NFIC;;chr3:44690211..44690267,+!p1@ZNF35!0.17!10.91!ZNF35;;chr5:88178983..88179012,-!p1@MEF2C!0.17!9.74!MEF2C;;chr19:6110474..6110551,-!p1@RFX2!0.17!7.50!RFX2;;chr18:45456930..45456967,-!p2@SMAD2!0.17!6.82!SMAD2;;chr12:48298785..48298828,-!p1@VDR!0.17!6.43!VDR;;chr1:14075865..14075896,+!p3@PRDM2!0.17!4.87!PRDM2;;chr4:38665883..38665922,+!p3@KLF3!0.17!4.29!KLF3;;chr3:150126416..150126437,+!p3@TSC22D2!0.17!4.09!TSC22D2;;chr21:27107465..27107557,+!p3@GABPA!0.17!4.09!GABPA;;chr19:6280025..6280040,-!p2@MLLT1!0.17!3.99!MLLT1;;chr1:211433275..211433335,+!p2@RCOR3!0.17!3.31!RCOR3;;chr22:41697497..41697515,+!p2@ZC3H7B!0.17!2.92!ZC3H7B;;chr12:27485762..27485776,+!p3@ARNTL2!0.17!2.83!ARNTL2;;chr13:45151403..45151433,-!p5@TSC22D1!0.17!2.14!TSC22D1;;chr4:206390..206444,+!p1@ZNF876P!0.17!1.56!ZNF876P;;chr17:42297282..42297300,-!p9@UBTF!0.17!1.56!UBTF;;chr5:142783792..142783842,-!p5@NR3C1!0.17!1.56!NR3C1;;chr8:124286670..124286702,-!p3@ZHX1!0.17!1.46!ZHX1;;chrX:70503037..70503095,+!p3@NONO!0.17!1.36!NONO;;chr15:96875657..96875760,+!p14@NR2F2!0.17!1.36!NR2F2;;chr17:42297092..42297112,-!p11@UBTF!0.17!1.27!UBTF;;chr19:42788611..42788634,+!p2@CIC!0.17!1.27!CIC;;chr4:146436110..146436135,+!p6@SMAD1!0.17!1.07!SMAD1;;chr16:67063248..67063261,+!p5@CBFB!0.17!0.97!CBFB;;chr3:168865194..168865245,-!p3@MECOM!0.17!0.88!MECOM;;chr12:66218443..66218461,+!p8@HMGA2!0.17!0.88!HMGA2;;chr1:211432872..211432883,+!p7@RCOR3!0.17!0.88!RCOR3;;chr3:37217344..37217370,-!p5@LRRFIP2!0.17!0.78!LRRFIP2;;chr10:44144187..44144201,-!p3@ZNF32!0.17!0.78!ZNF32;;chr9:2016758..2016782,+!p11@SMARCA2!0.17!0.78!SMARCA2;;chr9:16870659..16870675,-!p2@BNC2!0.17!0.78!BNC2;;chr12:49454026..49454049,-!p9@MLL2!0.17!0.68!MLL2;;chr10:44144219..44144230,-!p5@ZNF32!0.17!0.58!ZNF32;;chr5:92919375..92919438,+!p6@NR2F1!0.17!0.58!NR2F1;;chr5:158140039..158140051,-!p12@EBF1!0.17!0.49!EBF1;;chr5:158524625..158524669,-!p6@EBF1!0.17!0.49!EBF1;;chr5:158527104..158527135,-!p4@EBF1!0.17!0.49!EBF1;;chr5:72744336..72744359,-!p5@FOXD1!0.17!0.49!FOXD1;;chr6:45389893..45389902,+!p21@RUNX2!0.17!0.49!RUNX2;;chr7:14029034..14029087,-!p5@ETV1!0.17!0.49!ETV1;;chr7:149158147..149158158,-!p4@ZNF777!0.17!0.49!ZNF777;;chr7:150945865..150945896,-!p4@SMARCD3!0.17!0.49!SMARCD3;;chr7:150946376..150946389,-!p6@SMARCD3!0.17!0.49!SMARCD3;;chr7:19156632..19156652,-!p3@TWIST1!0.17!0.49!TWIST1;;chr7:27169801..27169844,-!p2@HOXA4!0.17!0.49!HOXA4;;chr7:27170359..27170381,-!p1@HOXA4!0.17!0.49!HOXA4;;chr7:27212374..27212387,-!p12@HOXA10!0.17!0.49!HOXA10;;chr8:106330515..106330525,+!p6@ZFPM2!0.17!0.49!ZFPM2;;chr8:106330823..106330836,+!p3@ZFPM2!0.17!0.49!ZFPM2;;chr8:42698383..42698394,-!p5@THAP1!0.17!0.49!THAP1;;chr8:93115508..93115552,-!p6@RUNX1T1!0.17!0.49!RUNX1T1;;chr10:119302182..119302196,+!p6@EMX2!0.17!0.49!EMX2;;chr11:65688056..65688069,+!p21@DRAP1!0.17!0.49!DRAP1;;chr12:10870927..10870966,-!p5@CSDA!0.17!0.49!CSDA;;chr12:115121587..115121597,-!p10@TBX3!0.17!0.49!TBX3;;chr12:11802957..11802964,+!p8@ETV6!0.17!0.49!ETV6;;chr12:26278030..26278039,-!p7@BHLHE41!0.17!0.49!BHLHE41;;chr12:51611583..51611612,-!p4@POU6F1!0.17!0.49!POU6F1;;chr12:54379569..54379583,+!p9@HOXC5!0.17!0.49!HOXC5;;chr14:62214151..62214164,+!p11@HIF1A!0.17!0.49!HIF1A;;chr16:67881617..67881626,-!p6@CENPT!0.17!0.49!CENPT;;chr17:38501500..38501517,+!p13@RARA!0.17!0.49!RARA;;chr17:45928443..45928473,-!p2@SP6!0.17!0.49!SP6;;chr17:46621279..46621297,-!p13@HOXB2!0.17!0.49!HOXB2;;chr17:46622143..46622152,-!p14@HOXB2!0.17!0.49!HOXB2;;chr17:46671108..46671147,-!p1@HOXB5!0.17!0.49!HOXB5;;chr17:46675344..46675355,-!p9@HOXB6!0.17!0.49!HOXB6;;chr17:46688310..46688323,-!p4@HOXB7!0.17!0.49!HOXB7;;chr17:46692457..46692484,-!p2@HOXB8!0.17!0.49!HOXB8;;chr17:46703240..46703257,-!p6@HOXB9!0.17!0.49!HOXB9;;chr17:46703528..46703549,-!p5@HOXB9!0.17!0.49!HOXB9;;chr18:19749504..19749515,+!p5@GATA6!0.17!0.49!GATA6;;chr18:52969844..52969895,-!p27@TCF4!0.17!0.49!TCF4;;chr18:53089453..53089482,-!p11@TCF4!0.17!0.49!TCF4;;chr18:53256971..53256984,-!p26@TCF4!0.17!0.49!TCF4;;chr19:12251202..12251208,-!p5@ZNF20!0.17!0.49!ZNF20;;chr19:12267492..12267505,-!p2@ZNF625,p3@ZNF20!0.17!0.49!ZNF625;;chr19:13135369..13135375,+!p21@NFIX!0.17!0.49!NFIX;;chr19:13135832..13135853,+!p16@NFIX!0.17!0.49!NFIX;;chr19:23299851..23299880,+!p2@ZNF730!0.17!0.49!ZNF730;;chr19:45908278..45908282,-!p5@PPP1R13L!0.17!0.49!PPP1R13L;;chr19:45908286..45908291,-!p3@PPP1R13L!0.17!0.49!PPP1R13L;;chr19:53758167..53758190,-!p3@ZNF677!0.17!0.49!ZNF677;;chr1:119530706..119530736,-!p3@TBX15!0.17!0.49!TBX15;;chr1:197886646..197886657,+!p5@LHX9!0.17!0.49!LHX9;;chr1:200011711..200011752,+!p3@NR5A2!0.17!0.49!NR5A2;;chr1:211433417..211433428,+!p17@RCOR3!0.17!0.49!RCOR3;;chr20:42602000..42602034,+!p5@TOX2!0.17!0.49!TOX2;;chr21:40032558..40032578,-!p5@ERG!0.17!0.49!ERG;;chrX:147582130..147582147,+!p3@AFF2!0.17!0.49!AFF2;;chr22:19746969..19746987,+!p2@TBX1!0.17!0.49!TBX1;;chr2:102091478..102091490,-!p3@RFX8!0.17!0.49!RFX8;;chr2:119605374..119605377,-!p7@EN1!0.17!0.49!EN1;;chr2:172967266..172967271,-!p6@DLX2!0.17!0.49!DLX2;;chr2:175199697..175199706,+!p2@SP9!0.17!0.49!SP9;;chr2:177001237..177001252,+!p5@HOXD3!0.17!0.49!HOXD3;;chr3:141121871..141121885,+!p13@ZBTB38!0.17!0.49!ZBTB38;;chr3:157824001..157824078,-!p2@SHOX2!0.17!0.49!SHOX2;;chr3:52001374..52001385,-!p6@PCBP4!0.17!0.49!PCBP4;;chr4:111544254..111544270,-!p3@PITX2!0.17!0.49!PITX2;;chr6:136610911..136610990,-!p1@BCLAF1!0.16!116.83!BCLAF1;;chr10:51565188..51565236,+!p1@NCOA4!0.16!97.24!NCOA4;;chr7:101459263..101459310,+!p1@CUX1!0.16!76.59!CUX1;;chr14:21945335..21945419,+!p1@TOX4!0.16!33.42!TOX4;;chr12:77459306..77459365,-!p1@E2F7!0.16!15.59!E2F7;;chr9:99540335..99540388,-!p1@ZNF510!0.16!9.06!ZNF510;;chr13:45151259..45151326,-!p2@TSC22D1!0.16!7.02!TSC22D1;;chr2:174830564..174830605,-!p3@SP3!0.16!5.75!SP3;;chr17:47492252..47492265,-!p2@PHB!0.16!4.58!PHB;;chr20:3388541..3388575,-!p2@C20orf194!0.16!4.38!C20orf194;;chr19:53696587..53696633,-!p1@ZNF665!0.16!3.99!ZNF665;;chr19:58095501..58095535,+!p1@ZIK1!0.16!3.80!ZIK1;;chr4:1873011..1873063,+!p2@WHSC1!0.16!3.70!WHSC1;;chr17:46125685..46125699,+!p3@NFE2L1!0.16!3.70!NFE2L1;;chr19:53193790..53193821,-!p3@ZNF83!0.16!3.22!ZNF83;;chr5:43121607..43121649,+!p4@ZNF131!0.16!2.92!ZNF131;;chr12:57919293..57919311,+!p3@MBD6!0.16!2.73!MBD6;;chr1:41174988..41175047,+!p4@NFYC!0.16!2.63!NFYC;;chr4:56412978..56413003,-!p1@CLOCK!0.16!2.34!CLOCK;;chr3:40566371..40566400,+!p2@ZNF621!0.16!2.05!ZNF621;;chr10:76585205..76585251,+!p3@KAT6B!0.16!2.05!KAT6B;;chr19:44037546..44037594,+!p1@ZNF575!0.16!1.85!ZNF575;;chr1:164528616..164528660,+!p5@PBX1!0.16!1.85!PBX1;;chr6:42419043..42419087,-!p2@TRERF1!0.16!1.75!TRERF1;;chr10:43932553..43932571,+!p2@ZNF487P!0.16!1.36!ZNF487P;;chr7:86782094..86782108,+!p5@DMTF1!0.16!1.27!DMTF1;;chr19:57078972..57079027,+!p2@ZNF470!0.16!1.17!ZNF470;;chr19:38042240..38042309,+!p2@ZNF540!0.16!1.17!ZNF540;;
|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000057;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002620;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002097;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002416
|ffid_belonging_in_development=CL:0000134
|fonse_cell_line=
|fonse_cell_line=
|fonse_cell_line_closure=
|fonse_cell_line_closure=
Line 66: Line 41:
|fonse_treatment=
|fonse_treatment=
|fonse_treatment_closure=
|fonse_treatment_closure=
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|comment=
|created_by=
|creation_date=
|def=
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|name=Fibroblast - skin normal, donor2
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|rna_box=120
|rna_catalog_number=custom
|rna_concentration=0.999
|rna_extraction_protocol=OP-RNA-extraction-totalRNA-TRIzol-ethanol-v1.0
|rna_lot_number=
|rna_od260/230=1.96
|rna_od260/280=2.09
|rna_position=D4
|rna_rin=
|rna_sample_type=total RNA
|rna_tube_id=120D4
|rna_weight_ug=134.8569
|sample_age=3 year old child
|sample_category=primary cells
|sample_cell_catalog=N/A
|sample_cell_line=
|sample_cell_lot=GM00498
|sample_cell_type=fibroblast
|sample_collaboration=Splicing (contact: Al Forrest)
|sample_company=Coriell
|sample_description=
|sample_dev_stage=
|sample_disease=APPARENTLY HEALTHY NON-FETAL T
|sample_donor(cell lot)=
|sample_ethnicity=U
|sample_experimental_condition=
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;1.07861901259728e-237!GO:0043226;organelle;4.07459966591131e-192!GO:0043229;intracellular organelle;9.82221731108118e-192!GO:0043231;intracellular membrane-bound organelle;1.3596010761274e-184!GO:0043227;membrane-bound organelle;1.49647827637597e-184!GO:0005737;cytoplasm;2.13468576365535e-172!GO:0044422;organelle part;8.81670766313915e-136!GO:0044446;intracellular organelle part;4.6841745957868e-134!GO:0044444;cytoplasmic part;6.61587647293996e-122!GO:0032991;macromolecular complex;6.70932624186694e-95!GO:0044238;primary metabolic process;1.84939176518266e-85!GO:0043170;macromolecule metabolic process;8.52568606007542e-85!GO:0044237;cellular metabolic process;1.47077328153909e-84!GO:0005515;protein binding;1.07273766866324e-83!GO:0030529;ribonucleoprotein complex;4.43646953172834e-81!GO:0005634;nucleus;4.81574872650347e-80!GO:0044428;nuclear part;8.50709475957195e-69!GO:0043233;organelle lumen;1.83905447064328e-67!GO:0031974;membrane-enclosed lumen;1.83905447064328e-67!GO:0003723;RNA binding;4.71837660075138e-66!GO:0016043;cellular component organization and biogenesis;2.09863230009571e-52!GO:0005739;mitochondrion;7.67029114616951e-52!GO:0043234;protein complex;4.00973575556594e-48!GO:0005840;ribosome;1.1993203025752e-47!GO:0043283;biopolymer metabolic process;1.59536853950869e-47!GO:0019538;protein metabolic process;8.50534414417906e-46!GO:0010467;gene expression;1.01221302937248e-45!GO:0006412;translation;1.35401050723681e-45!GO:0006396;RNA processing;1.66998948362896e-45!GO:0015031;protein transport;1.9936445856915e-45!GO:0033036;macromolecule localization;4.89431735005931e-45!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;3.55358597544361e-43!GO:0031090;organelle membrane;8.54505258758731e-43!GO:0003735;structural constituent of ribosome;1.12976479553393e-42!GO:0031981;nuclear lumen;5.32866327227096e-42!GO:0008104;protein localization;9.39554988266588e-42!GO:0045184;establishment of protein localization;1.25611478176772e-41!GO:0044260;cellular macromolecule metabolic process;5.35123034615845e-40!GO:0044267;cellular protein metabolic process;1.78799023541681e-39!GO:0016071;mRNA metabolic process;9.2168980859156e-38!GO:0046907;intracellular transport;1.09881665027966e-36!GO:0005829;cytosol;1.23671118767759e-36!GO:0033279;ribosomal subunit;1.59445512700467e-36!GO:0044429;mitochondrial part;3.55444966300359e-36!GO:0008380;RNA splicing;3.52745257505314e-35!GO:0043228;non-membrane-bound organelle;4.55293830727468e-35!GO:0043232;intracellular non-membrane-bound organelle;4.55293830727468e-35!GO:0009059;macromolecule biosynthetic process;7.37140710258565e-34!GO:0031967;organelle envelope;1.03206372089959e-33!GO:0006996;organelle organization and biogenesis;2.09608977601964e-33!GO:0031975;envelope;2.33050648472829e-33!GO:0006397;mRNA processing;2.81864461557903e-33!GO:0009058;biosynthetic process;1.13229666395187e-31!GO:0044249;cellular biosynthetic process;1.13229666395187e-31!GO:0065003;macromolecular complex assembly;7.57346387013893e-31!GO:0006886;intracellular protein transport;3.97101875062541e-30!GO:0022607;cellular component assembly;1.31444910303944e-28!GO:0022613;ribonucleoprotein complex biogenesis and assembly;4.6287673083125e-28!GO:0005830;cytosolic ribosome (sensu Eukaryota);1.95476317724083e-27!GO:0003676;nucleic acid binding;7.4612377750676e-27!GO:0005654;nucleoplasm;2.27544978348091e-26!GO:0006259;DNA metabolic process;2.99668616651801e-25!GO:0005681;spliceosome;5.23271260363816e-25!GO:0051649;establishment of cellular localization;2.77696039252873e-23!GO:0005740;mitochondrial envelope;2.85574955446935e-23!GO:0051641;cellular localization;6.81963315857631e-23!GO:0000166;nucleotide binding;5.65455226678686e-22!GO:0007049;cell cycle;8.04333674387194e-22!GO:0016070;RNA metabolic process;8.74424138810096e-22!GO:0031966;mitochondrial membrane;9.15995684499504e-22!GO:0019866;organelle inner membrane;1.23588418162402e-21!GO:0006457;protein folding;1.50468731910542e-21!GO:0044451;nucleoplasm part;2.11303961239984e-21!GO:0044445;cytosolic part;2.87634745524496e-21!GO:0006119;oxidative phosphorylation;1.37100742032906e-20!GO:0016462;pyrophosphatase activity;2.01284511259922e-20!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;2.28278556751686e-20!GO:0016817;hydrolase activity, acting on acid anhydrides;3.83333500826549e-20!GO:0005743;mitochondrial inner membrane;4.01496646600388e-20!GO:0017111;nucleoside-triphosphatase activity;1.01827541471613e-19!GO:0005783;endoplasmic reticulum;3.58530737489688e-19!GO:0015935;small ribosomal subunit;7.3628646623084e-19!GO:0015934;large ribosomal subunit;1.58346497169268e-18!GO:0022618;protein-RNA complex assembly;4.32833814938493e-18!GO:0012505;endomembrane system;6.67088160252701e-18!GO:0044455;mitochondrial membrane part;8.89508009271432e-18!GO:0048770;pigment granule;2.61940480123447e-17!GO:0042470;melanosome;2.61940480123447e-17!GO:0008134;transcription factor binding;2.8468000221832e-17!GO:0022402;cell cycle process;3.33376062768683e-17!GO:0000278;mitotic cell cycle;1.10149612922674e-16!GO:0006512;ubiquitin cycle;1.44186285991309e-16!GO:0048193;Golgi vesicle transport;1.97269112979033e-16!GO:0008135;translation factor activity, nucleic acid binding;6.48165918786779e-16!GO:0051603;proteolysis involved in cellular protein catabolic process;8.5789543722041e-16!GO:0016874;ligase activity;1.26710472447202e-15!GO:0032553;ribonucleotide binding;1.41264799325901e-15!GO:0032555;purine ribonucleotide binding;1.41264799325901e-15!GO:0005794;Golgi apparatus;1.52842627375873e-15!GO:0019941;modification-dependent protein catabolic process;1.78382040699889e-15!GO:0043632;modification-dependent macromolecule catabolic process;1.78382040699889e-15!GO:0044432;endoplasmic reticulum part;2.26391649889172e-15!GO:0006511;ubiquitin-dependent protein catabolic process;2.35542347953431e-15!GO:0044257;cellular protein catabolic process;2.60118661761901e-15!GO:0005730;nucleolus;2.61121311952877e-15!GO:0017076;purine nucleotide binding;2.94715117807529e-15!GO:0006974;response to DNA damage stimulus;3.21886691127007e-15!GO:0000502;proteasome complex (sensu Eukaryota);3.53796555069204e-15!GO:0005746;mitochondrial respiratory chain;5.6042909433868e-15!GO:0031980;mitochondrial lumen;6.23960862909581e-15!GO:0005759;mitochondrial matrix;6.23960862909581e-15!GO:0044265;cellular macromolecule catabolic process;6.80060570787858e-15!GO:0043285;biopolymer catabolic process;8.35533846769337e-15!GO:0051082;unfolded protein binding;9.55275753214063e-15!GO:0006605;protein targeting;9.96827195693905e-15!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;1.03363655428563e-14!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);3.07735894651966e-14!GO:0030163;protein catabolic process;9.67261124546837e-14!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);1.133398394657e-13!GO:0050136;NADH dehydrogenase (quinone) activity;1.42120823977691e-13!GO:0003954;NADH dehydrogenase activity;1.42120823977691e-13!GO:0008137;NADH dehydrogenase (ubiquinone) activity;1.42120823977691e-13!GO:0016192;vesicle-mediated transport;1.4807201150213e-13!GO:0009057;macromolecule catabolic process;2.62117536886691e-13!GO:0000398;nuclear mRNA splicing, via spliceosome;4.6360444901461e-13!GO:0000375;RNA splicing, via transesterification reactions;4.6360444901461e-13!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;4.6360444901461e-13!GO:0005761;mitochondrial ribosome;6.80169257324375e-13!GO:0000313;organellar ribosome;6.80169257324375e-13!GO:0000087;M phase of mitotic cell cycle;1.1016921331057e-12!GO:0007067;mitosis;1.54877795694418e-12!GO:0005524;ATP binding;1.75859332556278e-12!GO:0022403;cell cycle phase;1.80265518104695e-12!GO:0005694;chromosome;1.80781355694569e-12!GO:0006281;DNA repair;1.80781355694569e-12!GO:0051186;cofactor metabolic process;2.76252825765134e-12!GO:0003743;translation initiation factor activity;3.00792284561037e-12!GO:0003712;transcription cofactor activity;3.29401150273579e-12!GO:0032559;adenyl ribonucleotide binding;4.39281669695441e-12!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;4.44020758646578e-12!GO:0042775;organelle ATP synthesis coupled electron transport;5.67038149273771e-12!GO:0042773;ATP synthesis coupled electron transport;5.67038149273771e-12!GO:0005793;ER-Golgi intermediate compartment;7.53506235060507e-12!GO:0030964;NADH dehydrogenase complex (quinone);8.43953057766421e-12!GO:0045271;respiratory chain complex I;8.43953057766421e-12!GO:0005747;mitochondrial respiratory chain complex I;8.43953057766421e-12!GO:0006413;translational initiation;9.17395616513446e-12!GO:0051301;cell division;1.11214122672042e-11!GO:0030554;adenyl nucleotide binding;1.21620738820048e-11!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;2.11157084682091e-11!GO:0009719;response to endogenous stimulus;3.01821825592966e-11!GO:0044248;cellular catabolic process;3.0502972131608e-11!GO:0005635;nuclear envelope;4.23046516528212e-11!GO:0044427;chromosomal part;4.72815775326031e-11!GO:0042254;ribosome biogenesis and assembly;8.40667307021719e-11!GO:0016604;nuclear body;9.591604320111e-11!GO:0050794;regulation of cellular process;9.94819716783343e-11!GO:0042175;nuclear envelope-endoplasmic reticulum network;1.69752900858821e-10!GO:0043412;biopolymer modification;1.80739857643619e-10!GO:0031965;nuclear membrane;1.96148586963374e-10!GO:0051276;chromosome organization and biogenesis;2.41887231547866e-10!GO:0016887;ATPase activity;5.84633961125821e-10!GO:0005789;endoplasmic reticulum membrane;5.84633961125821e-10!GO:0008565;protein transporter activity;6.07228301638975e-10!GO:0006366;transcription from RNA polymerase II promoter;6.30439290448671e-10!GO:0006446;regulation of translational initiation;6.83062531844741e-10!GO:0042623;ATPase activity, coupled;9.78205250306878e-10!GO:0009259;ribonucleotide metabolic process;1.03704361103116e-09!GO:0044453;nuclear membrane part;1.1416501331318e-09!GO:0000279;M phase;1.25320372223133e-09!GO:0009055;electron carrier activity;1.35125166336867e-09!GO:0006913;nucleocytoplasmic transport;1.35564436361666e-09!GO:0006260;DNA replication;1.3645302969614e-09!GO:0006888;ER to Golgi vesicle-mediated transport;1.6594453024104e-09!GO:0006732;coenzyme metabolic process;1.93807059914172e-09!GO:0006464;protein modification process;2.20957601913921e-09!GO:0051169;nuclear transport;2.77891308561685e-09!GO:0051726;regulation of cell cycle;2.89757512777174e-09!GO:0000074;regulation of progression through cell cycle;2.89797346641391e-09!GO:0008639;small protein conjugating enzyme activity;3.59435671783169e-09!GO:0019787;small conjugating protein ligase activity;3.59987263309443e-09!GO:0006163;purine nucleotide metabolic process;3.77081523893672e-09!GO:0015630;microtubule cytoskeleton;4.4311003054766e-09!GO:0048523;negative regulation of cellular process;4.64785551453971e-09!GO:0009150;purine ribonucleotide metabolic process;4.79083162743188e-09!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;4.97841966276711e-09!GO:0016607;nuclear speck;5.02621943943555e-09!GO:0006461;protein complex assembly;5.48716051281532e-09!GO:0004842;ubiquitin-protein ligase activity;6.5821027116836e-09!GO:0006325;establishment and/or maintenance of chromatin architecture;7.73879318812463e-09!GO:0012501;programmed cell death;9.18674563274102e-09!GO:0004386;helicase activity;1.00410992232432e-08!GO:0009260;ribonucleotide biosynthetic process;1.15762719068205e-08!GO:0016879;ligase activity, forming carbon-nitrogen bonds;1.29638993968955e-08!GO:0009199;ribonucleoside triphosphate metabolic process;1.31443254255695e-08!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;1.45663492560417e-08!GO:0006164;purine nucleotide biosynthetic process;1.50934518045539e-08!GO:0043687;post-translational protein modification;1.6893211709961e-08!GO:0008026;ATP-dependent helicase activity;1.8489118868459e-08!GO:0009152;purine ribonucleotide biosynthetic process;1.86322612978011e-08!GO:0006915;apoptosis;1.93779523558389e-08!GO:0009205;purine ribonucleoside triphosphate metabolic process;2.01059785443369e-08!GO:0009144;purine nucleoside triphosphate metabolic process;2.01059785443369e-08!GO:0006323;DNA packaging;2.08444758644577e-08!GO:0009141;nucleoside triphosphate metabolic process;2.24396162993259e-08!GO:0003924;GTPase activity;2.51910530624554e-08!GO:0006399;tRNA metabolic process;3.58649090532352e-08!GO:0005788;endoplasmic reticulum lumen;3.70279097512548e-08!GO:0030120;vesicle coat;3.88462045823211e-08!GO:0030662;coated vesicle membrane;3.88462045823211e-08!GO:0008219;cell death;4.53290353951874e-08!GO:0016265;death;4.53290353951874e-08!GO:0015986;ATP synthesis coupled proton transport;5.09242025967661e-08!GO:0015985;energy coupled proton transport, down electrochemical gradient;5.09242025967661e-08!GO:0009060;aerobic respiration;7.51861443984578e-08!GO:0016881;acid-amino acid ligase activity;7.51861443984578e-08!GO:0005643;nuclear pore;7.58781394790648e-08!GO:0065002;intracellular protein transport across a membrane;7.65546272414504e-08!GO:0009142;nucleoside triphosphate biosynthetic process;8.50805837594576e-08!GO:0009201;ribonucleoside triphosphate biosynthetic process;8.50805837594576e-08!GO:0017038;protein import;9.49117170360823e-08!GO:0048519;negative regulation of biological process;1.01525956190228e-07!GO:0050789;regulation of biological process;1.04917940736461e-07!GO:0046034;ATP metabolic process;1.20714589745864e-07!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;1.31128945593564e-07!GO:0009145;purine nucleoside triphosphate biosynthetic process;1.31128945593564e-07!GO:0065004;protein-DNA complex assembly;1.43998331428042e-07!GO:0045333;cellular respiration;1.80338516507681e-07!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;1.95450755223282e-07!GO:0004812;aminoacyl-tRNA ligase activity;1.95450755223282e-07!GO:0016875;ligase activity, forming carbon-oxygen bonds;1.95450755223282e-07!GO:0030532;small nuclear ribonucleoprotein complex;2.31486570595587e-07!GO:0003714;transcription corepressor activity;2.44876294356737e-07!GO:0005768;endosome;2.47437294669606e-07!GO:0043038;amino acid activation;2.51579592316423e-07!GO:0006418;tRNA aminoacylation for protein translation;2.51579592316423e-07!GO:0043039;tRNA aminoacylation;2.51579592316423e-07!GO:0048475;coated membrane;2.5474677048298e-07!GO:0030117;membrane coat;2.5474677048298e-07!GO:0019222;regulation of metabolic process;3.14504023956552e-07!GO:0007010;cytoskeleton organization and biogenesis;3.45955288374417e-07!GO:0030036;actin cytoskeleton organization and biogenesis;3.51734820199744e-07!GO:0051187;cofactor catabolic process;4.68719891023793e-07!GO:0051246;regulation of protein metabolic process;5.09635715082543e-07!GO:0003697;single-stranded DNA binding;5.09635715082543e-07!GO:0019829;cation-transporting ATPase activity;5.18186496414875e-07!GO:0005667;transcription factor complex;5.44355043574314e-07!GO:0006099;tricarboxylic acid cycle;5.50996283190935e-07!GO:0046356;acetyl-CoA catabolic process;5.50996283190935e-07!GO:0006754;ATP biosynthetic process;6.86728759596239e-07!GO:0006753;nucleoside phosphate metabolic process;6.86728759596239e-07!GO:0006333;chromatin assembly or disassembly;7.6509710682959e-07!GO:0006403;RNA localization;8.12525647553689e-07!GO:0050657;nucleic acid transport;8.18875067855104e-07!GO:0051236;establishment of RNA localization;8.18875067855104e-07!GO:0050658;RNA transport;8.18875067855104e-07!GO:0006364;rRNA processing;8.21581663675411e-07!GO:0046930;pore complex;8.66700946415679e-07!GO:0044431;Golgi apparatus part;9.00718505477798e-07!GO:0009109;coenzyme catabolic process;1.00625259948819e-06!GO:0005813;centrosome;1.17087645525821e-06!GO:0031324;negative regulation of cellular metabolic process;1.39878287884091e-06!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;1.42151588418952e-06!GO:0005819;spindle;1.45496122565302e-06!GO:0009056;catabolic process;1.52652213206105e-06!GO:0051789;response to protein stimulus;1.55457689490464e-06!GO:0006986;response to unfolded protein;1.55457689490464e-06!GO:0043566;structure-specific DNA binding;1.56586557038004e-06!GO:0016072;rRNA metabolic process;1.58394010161442e-06!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;1.60491108650105e-06!GO:0005798;Golgi-associated vesicle;1.72003392841928e-06!GO:0016564;transcription repressor activity;1.96587484442033e-06!GO:0006084;acetyl-CoA metabolic process;2.19937335527577e-06!GO:0000785;chromatin;2.21041865597111e-06!GO:0016469;proton-transporting two-sector ATPase complex;2.44422600701306e-06!GO:0005815;microtubule organizing center;3.2142345817358e-06!GO:0000245;spliceosome assembly;3.23501503387339e-06!GO:0031202;RNA splicing factor activity, transesterification mechanism;3.39284116942514e-06!GO:0005525;GTP binding;3.39740910511729e-06!GO:0006613;cotranslational protein targeting to membrane;3.56225454794331e-06!GO:0015078;hydrogen ion transmembrane transporter activity;3.61825037707715e-06!GO:0032446;protein modification by small protein conjugation;3.90297146166334e-06!GO:0008361;regulation of cell size;4.40420531218119e-06!GO:0000151;ubiquitin ligase complex;4.78802951729132e-06!GO:0016049;cell growth;5.39445517762095e-06!GO:0045259;proton-transporting ATP synthase complex;5.84394204287109e-06!GO:0030029;actin filament-based process;6.02640623094614e-06!GO:0016567;protein ubiquitination;7.87168323318193e-06!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;7.92633414292969e-06!GO:0005839;proteasome core complex (sensu Eukaryota);8.32707779232897e-06!GO:0009892;negative regulation of metabolic process;9.32744821934263e-06!GO:0044440;endosomal part;9.97990534440788e-06!GO:0010008;endosome membrane;9.97990534440788e-06!GO:0031252;leading edge;1.17720216396279e-05!GO:0051188;cofactor biosynthetic process;1.22494691125742e-05!GO:0016859;cis-trans isomerase activity;1.30095279806757e-05!GO:0016853;isomerase activity;1.427952264792e-05!GO:0051170;nuclear import;1.621405823428e-05!GO:0006752;group transfer coenzyme metabolic process;1.66437665104332e-05!GO:0007005;mitochondrion organization and biogenesis;1.79985135930044e-05!GO:0043069;negative regulation of programmed cell death;1.79985135930044e-05!GO:0009117;nucleotide metabolic process;1.89239834757779e-05!GO:0003713;transcription coactivator activity;2.02435123179238e-05!GO:0006357;regulation of transcription from RNA polymerase II promoter;2.04712268264686e-05!GO:0051028;mRNA transport;2.05301216599872e-05!GO:0043067;regulation of programmed cell death;2.09312574839691e-05!GO:0019843;rRNA binding;2.22783050814203e-05!GO:0016568;chromatin modification;2.23863828946806e-05!GO:0016563;transcription activator activity;2.26536437823676e-05!GO:0042981;regulation of apoptosis;2.34393084671043e-05!GO:0006334;nucleosome assembly;2.50472159937088e-05!GO:0006606;protein import into nucleus;2.62231281240311e-05!GO:0007051;spindle organization and biogenesis;2.67618062985284e-05!GO:0045786;negative regulation of progression through cell cycle;2.68136978551335e-05!GO:0006916;anti-apoptosis;2.70850979033308e-05!GO:0031988;membrane-bound vesicle;2.7569402734106e-05!GO:0051329;interphase of mitotic cell cycle;2.82585164409579e-05!GO:0032561;guanyl ribonucleotide binding;2.98095347967149e-05!GO:0019001;guanyl nucleotide binding;2.98095347967149e-05!GO:0051325;interphase;3.11600948538469e-05!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;3.34321860783432e-05!GO:0016779;nucleotidyltransferase activity;3.38294339333805e-05!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;3.3948201703536e-05!GO:0043066;negative regulation of apoptosis;3.45705592328831e-05!GO:0004298;threonine endopeptidase activity;3.5510949144622e-05!GO:0043623;cellular protein complex assembly;3.56145644897952e-05!GO:0001558;regulation of cell growth;3.79371490581277e-05!GO:0030867;rough endoplasmic reticulum membrane;3.79563443614503e-05!GO:0016023;cytoplasmic membrane-bound vesicle;3.85992907901953e-05!GO:0000775;chromosome, pericentric region;3.93245677149226e-05!GO:0003724;RNA helicase activity;4.37126930919375e-05!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;4.61222882688572e-05!GO:0008092;cytoskeletal protein binding;4.69410452272875e-05!GO:0031497;chromatin assembly;5.3666826729701e-05!GO:0006612;protein targeting to membrane;5.50369710344761e-05!GO:0005770;late endosome;5.7564064842865e-05!GO:0030133;transport vesicle;5.94100183999797e-05!GO:0000139;Golgi membrane;6.08471983787079e-05!GO:0045454;cell redox homeostasis;6.87731076902998e-05!GO:0016491;oxidoreductase activity;6.92740112914816e-05!GO:0006793;phosphorus metabolic process;6.97127189462356e-05!GO:0006796;phosphate metabolic process;6.97127189462356e-05!GO:0043021;ribonucleoprotein binding;9.33065882889609e-05!GO:0031982;vesicle;9.34233355136478e-05!GO:0016310;phosphorylation;9.59892657802593e-05!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;9.62110201857878e-05!GO:0031323;regulation of cellular metabolic process;9.95181974024567e-05!GO:0016363;nuclear matrix;0.00010934487615088!GO:0016481;negative regulation of transcription;0.000130061952042611!GO:0015077;monovalent inorganic cation transmembrane transporter activity;0.000133970796595573!GO:0015980;energy derivation by oxidation of organic compounds;0.000134997392433192!GO:0065007;biological regulation;0.000140589731834256!GO:0005762;mitochondrial large ribosomal subunit;0.000142091974024675!GO:0000315;organellar large ribosomal subunit;0.000142091974024675!GO:0031410;cytoplasmic vesicle;0.000144270040542183!GO:0000075;cell cycle checkpoint;0.000147638819084629!GO:0009108;coenzyme biosynthetic process;0.000158932343135438!GO:0033116;ER-Golgi intermediate compartment membrane;0.000172459145906069!GO:0030663;COPI coated vesicle membrane;0.000202756204670635!GO:0030126;COPI vesicle coat;0.000202756204670635!GO:0005905;coated pit;0.000207481336166468!GO:0005773;vacuole;0.000216917615879736!GO:0005769;early endosome;0.000225486264475159!GO:0005048;signal sequence binding;0.000229770035965643!GO:0016787;hydrolase activity;0.000243374125343541!GO:0005885;Arp2/3 protein complex;0.000251674113909552!GO:0006350;transcription;0.000258820989518035!GO:0019899;enzyme binding;0.000304361590089697!GO:0000314;organellar small ribosomal subunit;0.000317291851980061!GO:0005763;mitochondrial small ribosomal subunit;0.000317291851980061!GO:0003899;DNA-directed RNA polymerase activity;0.000354215177671772!GO:0008250;oligosaccharyl transferase complex;0.000386317079170064!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.000466274068027831!GO:0016740;transferase activity;0.000504834413494261!GO:0030137;COPI-coated vesicle;0.000517027184677755!GO:0006891;intra-Golgi vesicle-mediated transport;0.000519154682737169!GO:0004576;oligosaccharyl transferase activity;0.000531872782937268!GO:0008654;phospholipid biosynthetic process;0.000574265732344509!GO:0016772;transferase activity, transferring phosphorus-containing groups;0.000576767342618279!GO:0005874;microtubule;0.000580932138706297!GO:0007249;I-kappaB kinase/NF-kappaB cascade;0.000597608611909966!GO:0006261;DNA-dependent DNA replication;0.000656059679290605!GO:0015631;tubulin binding;0.000660251022050115!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;0.000669170918680981!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.000675279641178254!GO:0051427;hormone receptor binding;0.000722642344303671!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.000822432892285392!GO:0003729;mRNA binding;0.000833877293716384!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.000862557989087576!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.0009042776399905!GO:0008186;RNA-dependent ATPase activity;0.000923699079910664!GO:0019867;outer membrane;0.0009271428575809!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.000959339457989622!GO:0031968;organelle outer membrane;0.000967442444794994!GO:0005791;rough endoplasmic reticulum;0.00101216153585915!GO:0051920;peroxiredoxin activity;0.00101666527038821!GO:0051168;nuclear export;0.00101854394415828!GO:0048500;signal recognition particle;0.00104190035460817!GO:0010468;regulation of gene expression;0.00105690350040825!GO:0000776;kinetochore;0.00105690350040825!GO:0018196;peptidyl-asparagine modification;0.00113883627183807!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.00113883627183807!GO:0006383;transcription from RNA polymerase III promoter;0.00115296991049113!GO:0000323;lytic vacuole;0.0012044750852575!GO:0005764;lysosome;0.0012044750852575!GO:0005852;eukaryotic translation initiation factor 3 complex;0.001222572105537!GO:0006302;double-strand break repair;0.00129794471290299!GO:0006414;translational elongation;0.00130001466897333!GO:0006091;generation of precursor metabolites and energy;0.00133370641679242!GO:0035257;nuclear hormone receptor binding;0.00135549524214962!GO:0048471;perinuclear region of cytoplasm;0.00142088569962626!GO:0031072;heat shock protein binding;0.00146977332558338!GO:0006626;protein targeting to mitochondrion;0.00150284140552235!GO:0016281;eukaryotic translation initiation factor 4F complex;0.00150284140552235!GO:0016197;endosome transport;0.0015488265644185!GO:0005657;replication fork;0.00164701327676961!GO:0051252;regulation of RNA metabolic process;0.0017376134884661!GO:0043681;protein import into mitochondrion;0.00179383084220374!GO:0043284;biopolymer biosynthetic process;0.00179540857368723!GO:0019219;regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.00180160979981519!GO:0007050;cell cycle arrest;0.00189326576409061!GO:0030658;transport vesicle membrane;0.00199258609318108!GO:0003690;double-stranded DNA binding;0.00202187773704717!GO:0003682;chromatin binding;0.00214743932842062!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00221427097298623!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00221427097298623!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00221427097298623!GO:0004004;ATP-dependent RNA helicase activity;0.00245035454306216!GO:0040008;regulation of growth;0.00245818182699909!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.00252520806095004!GO:0045047;protein targeting to ER;0.00252520806095004!GO:0005741;mitochondrial outer membrane;0.00252520806095004!GO:0007052;mitotic spindle organization and biogenesis;0.00255289240765287!GO:0000079;regulation of cyclin-dependent protein kinase activity;0.00256502086106764!GO:0046474;glycerophospholipid biosynthetic process;0.00271435886991722!GO:0000082;G1/S transition of mitotic cell cycle;0.00293519057215106!GO:0030041;actin filament polymerization;0.00302811621658926!GO:0008094;DNA-dependent ATPase activity;0.00310866938619483!GO:0030521;androgen receptor signaling pathway;0.00311634281399374!GO:0030134;ER to Golgi transport vesicle;0.00314590894227608!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.00320932515294698!GO:0003684;damaged DNA binding;0.0032767653457141!GO:0046489;phosphoinositide biosynthetic process;0.0032767653457141!GO:0003746;translation elongation factor activity;0.00330449131563818!GO:0008312;7S RNA binding;0.0033058793652293!GO:0008154;actin polymerization and/or depolymerization;0.0035948238922106!GO:0048522;positive regulation of cellular process;0.00371537038075441!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.00374175479530699!GO:0007093;mitotic cell cycle checkpoint;0.00388339747230586!GO:0006839;mitochondrial transport;0.00389092331624575!GO:0042802;identical protein binding;0.00390136164597473!GO:0000059;protein import into nucleus, docking;0.00406463642077364!GO:0007264;small GTPase mediated signal transduction;0.00411997039273462!GO:0006402;mRNA catabolic process;0.00436340221082675!GO:0030880;RNA polymerase complex;0.00440936105004975!GO:0030127;COPII vesicle coat;0.00443126543634597!GO:0012507;ER to Golgi transport vesicle membrane;0.00443126543634597!GO:0003711;transcription elongation regulator activity;0.00449754505219468!GO:0009165;nucleotide biosynthetic process;0.00464083372324293!GO:0030660;Golgi-associated vesicle membrane;0.00466343554234696!GO:0051087;chaperone binding;0.00466343554234696!GO:0003702;RNA polymerase II transcription factor activity;0.00479602543862972!GO:0030176;integral to endoplasmic reticulum membrane;0.00483846772308482!GO:0005684;U2-dependent spliceosome;0.0050944954860567!GO:0006354;RNA elongation;0.0050944954860567!GO:0003678;DNA helicase activity;0.0052276892004513!GO:0030027;lamellipodium;0.00530026992635637!GO:0032774;RNA biosynthetic process;0.00530049995632153!GO:0008047;enzyme activator activity;0.00530049995632153!GO:0016706;oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors;0.00533141181202463!GO:0017166;vinculin binding;0.0053552962107896!GO:0006892;post-Golgi vesicle-mediated transport;0.00539328222120756!GO:0005869;dynactin complex;0.00543943721199227!GO:0051128;regulation of cellular component organization and biogenesis;0.00545949528037776!GO:0006310;DNA recombination;0.00555336809666426!GO:0051052;regulation of DNA metabolic process;0.00566714177158466!GO:0045045;secretory pathway;0.00583479386839501!GO:0031543;peptidyl-proline dioxygenase activity;0.00592883175755039!GO:0030132;clathrin coat of coated pit;0.00608769166327856!GO:0000226;microtubule cytoskeleton organization and biogenesis;0.00609605998958983!GO:0006351;transcription, DNA-dependent;0.00609605998958983!GO:0016044;membrane organization and biogenesis;0.0062136357480053!GO:0031124;mRNA 3'-end processing;0.0062136357480053!GO:0044262;cellular carbohydrate metabolic process;0.00636007327480156!GO:0008180;signalosome;0.00640681478709091!GO:0048487;beta-tubulin binding;0.00640681478709091!GO:0019798;procollagen-proline dioxygenase activity;0.00649638328516523!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.00677034769376249!GO:0015399;primary active transmembrane transporter activity;0.00677034769376249!GO:0046483;heterocycle metabolic process;0.00678049330845168!GO:0000049;tRNA binding;0.00679336022330515!GO:0045892;negative regulation of transcription, DNA-dependent;0.00679336022330515!GO:0000339;RNA cap binding;0.0068309681272239!GO:0043488;regulation of mRNA stability;0.00703885269650495!GO:0043487;regulation of RNA stability;0.00703885269650495!GO:0007088;regulation of mitosis;0.00711135214219399!GO:0030118;clathrin coat;0.00731157856707305!GO:0044452;nucleolar part;0.00731410343486969!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.00734635265742712!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.00734635265742712!GO:0007006;mitochondrial membrane organization and biogenesis;0.00739416007038165!GO:0003779;actin binding;0.00740031435107437!GO:0065009;regulation of a molecular function;0.00746558920433062!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.00746803129318608!GO:0000786;nucleosome;0.00752265596550509!GO:0000910;cytokinesis;0.00752265596550509!GO:0008022;protein C-terminus binding;0.00794853015535037!GO:0007243;protein kinase cascade;0.00812774043876397!GO:0006509;membrane protein ectodomain proteolysis;0.00833447075578102!GO:0033619;membrane protein proteolysis;0.00833447075578102!GO:0008139;nuclear localization sequence binding;0.00840956525277919!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.00854320861538924!GO:0000428;DNA-directed RNA polymerase complex;0.00854320861538924!GO:0031901;early endosome membrane;0.00858984459265711!GO:0006352;transcription initiation;0.00859597925817321!GO:0032984;macromolecular complex disassembly;0.0087723574483866!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.0089864888843178!GO:0005862;muscle thin filament tropomyosin;0.00914568545220229!GO:0043433;negative regulation of transcription factor activity;0.00928189433541043!GO:0001726;ruffle;0.00940927871519758!GO:0004177;aminopeptidase activity;0.00959310679938412!GO:0031418;L-ascorbic acid binding;0.00987657165641905!GO:0045792;negative regulation of cell size;0.00991020607527203!GO:0001527;microfibril;0.0100392314032258!GO:0009112;nucleobase metabolic process;0.0105740541672082!GO:0016272;prefoldin complex;0.0106608300763465!GO:0015992;proton transport;0.0110730917342302!GO:0030308;negative regulation of cell growth;0.0113185348116904!GO:0043624;cellular protein complex disassembly;0.0113458812853536!GO:0006818;hydrogen transport;0.0120480945606879!GO:0005876;spindle microtubule;0.0120648012697893!GO:0006401;RNA catabolic process;0.0121466874035532!GO:0030384;phosphoinositide metabolic process;0.0125050806649802!GO:0003756;protein disulfide isomerase activity;0.0126290646689271!GO:0016864;intramolecular oxidoreductase activity, transposing S-S bonds;0.0126290646689271!GO:0004527;exonuclease activity;0.0128476034716382!GO:0007017;microtubule-based process;0.0129043817160441!GO:0006595;polyamine metabolic process;0.0133726354243499!GO:0006650;glycerophospholipid metabolic process;0.013551102871575!GO:0008033;tRNA processing;0.013806495672429!GO:0007034;vacuolar transport;0.0138337600734156!GO:0030833;regulation of actin filament polymerization;0.0139722707410116!GO:0016251;general RNA polymerase II transcription factor activity;0.0140294397991387!GO:0005801;cis-Golgi network;0.0142757058836463!GO:0035258;steroid hormone receptor binding;0.0145039449800592!GO:0045449;regulation of transcription;0.0148469301841097!GO:0007021;tubulin folding;0.0154343589980737!GO:0043241;protein complex disassembly;0.015515565499635!GO:0008320;protein transmembrane transporter activity;0.0159027609560733!GO:0050681;androgen receptor binding;0.0160696928156837!GO:0006497;protein amino acid lipidation;0.0165815505545942!GO:0031123;RNA 3'-end processing;0.0168327201679031!GO:0031529;ruffle organization and biogenesis;0.0170192292536822!GO:0005832;chaperonin-containing T-complex;0.0171644883992607!GO:0043022;ribosome binding;0.017184957756158!GO:0006289;nucleotide-excision repair;0.0173975811567629!GO:0007059;chromosome segregation;0.0192397217757087!GO:0004674;protein serine/threonine kinase activity;0.0197260580870165!GO:0005637;nuclear inner membrane;0.0197544011522036!GO:0006368;RNA elongation from RNA polymerase II promoter;0.0202581668903336!GO:0017015;regulation of transforming growth factor beta receptor signaling pathway;0.0205824501781743!GO:0050811;GABA receptor binding;0.0206777351562646!GO:0031902;late endosome membrane;0.020694872239577!GO:0051493;regulation of cytoskeleton organization and biogenesis;0.0211699250323184!GO:0033043;regulation of organelle organization and biogenesis;0.0211699250323184!GO:0030518;steroid hormone receptor signaling pathway;0.0216026307652898!GO:0031625;ubiquitin protein ligase binding;0.0217937306603064!GO:0019206;nucleoside kinase activity;0.0218154572223182!GO:0008064;regulation of actin polymerization and/or depolymerization;0.0222799246960039!GO:0045893;positive regulation of transcription, DNA-dependent;0.0227998152964389!GO:0009116;nucleoside metabolic process;0.0228922170931173!GO:0000922;spindle pole;0.0230581457797938!GO:0007179;transforming growth factor beta receptor signaling pathway;0.0232095534743531!GO:0000209;protein polyubiquitination;0.024042840594413!GO:0006506;GPI anchor biosynthetic process;0.0246065370435916!GO:0007030;Golgi organization and biogenesis;0.0247339955554366!GO:0030659;cytoplasmic vesicle membrane;0.0247339955554366!GO:0051045;negative regulation of membrane protein ectodomain proteolysis;0.0247339955554366!GO:0051043;regulation of membrane protein ectodomain proteolysis;0.0247339955554366!GO:0022890;inorganic cation transmembrane transporter activity;0.0250545239504194!GO:0048468;cell development;0.0253013508623681!GO:0035035;histone acetyltransferase binding;0.0258656190367628!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.0259634657477297!GO:0015002;heme-copper terminal oxidase activity;0.0259634657477297!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.0259634657477297!GO:0004129;cytochrome-c oxidase activity;0.0259634657477297!GO:0016667;oxidoreductase activity, acting on sulfur group of donors;0.0259634657477297!GO:0030496;midbody;0.0261032054191322!GO:0006376;mRNA splice site selection;0.0264756688196823!GO:0000389;nuclear mRNA 3'-splice site recognition;0.0264756688196823!GO:0022408;negative regulation of cell-cell adhesion;0.0266934140195492!GO:0005665;DNA-directed RNA polymerase II, core complex;0.0269799411621381!GO:0030125;clathrin vesicle coat;0.0270022576308743!GO:0030665;clathrin coated vesicle membrane;0.0270022576308743!GO:0005856;cytoskeleton;0.0270625928936281!GO:0051101;regulation of DNA binding;0.0274833640101718!GO:0016627;oxidoreductase activity, acting on the CH-CH group of donors;0.0277187231997199!GO:0006144;purine base metabolic process;0.0284061295768008!GO:0030032;lamellipodium biogenesis;0.0285071257008118!GO:0030865;cortical cytoskeleton organization and biogenesis;0.0292157519622461!GO:0006378;mRNA polyadenylation;0.0292157519622461!GO:0045935;positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.0298238176275441!GO:0006979;response to oxidative stress;0.0302205834265202!GO:0006740;NADPH regeneration;0.0304434743784429!GO:0006098;pentose-phosphate shunt;0.0304434743784429!GO:0016408;C-acyltransferase activity;0.0304473559542454!GO:0004003;ATP-dependent DNA helicase activity;0.0306207845237279!GO:0006505;GPI anchor metabolic process;0.031112016532529!GO:0006611;protein export from nucleus;0.031112016532529!GO:0045941;positive regulation of transcription;0.0311949797603816!GO:0051287;NAD binding;0.0318437078354349!GO:0000307;cyclin-dependent protein kinase holoenzyme complex;0.0330799148275932!GO:0005096;GTPase activator activity;0.0330906789978644!GO:0032508;DNA duplex unwinding;0.0332354698797961!GO:0032392;DNA geometric change;0.0332354698797961!GO:0005784;translocon complex;0.0343979752565778!GO:0000122;negative regulation of transcription from RNA polymerase II promoter;0.0343979752565778!GO:0031371;ubiquitin conjugating enzyme complex;0.0343983895100091!GO:0000118;histone deacetylase complex;0.0344005456245831!GO:0007041;lysosomal transport;0.034484923961363!GO:0004656;procollagen-proline 4-dioxygenase activity;0.0353847844152954!GO:0031545;peptidyl-proline 4-dioxygenase activity;0.0353847844152954!GO:0016126;sterol biosynthetic process;0.0356369058321962!GO:0043130;ubiquitin binding;0.0358949458821983!GO:0032182;small conjugating protein binding;0.0358949458821983!GO:0006984;ER-nuclear signaling pathway;0.0364978101353737!GO:0033673;negative regulation of kinase activity;0.0371200804663437!GO:0006469;negative regulation of protein kinase activity;0.0371200804663437!GO:0019205;nucleobase, nucleoside, nucleotide kinase activity;0.0372368818594123!GO:0006607;NLS-bearing substrate import into nucleus;0.0375258316574515!GO:0043492;ATPase activity, coupled to movement of substances;0.0376144396608959!GO:0008017;microtubule binding;0.0376144396608959!GO:0032940;secretion by cell;0.0379358994608581!GO:0006405;RNA export from nucleus;0.0390221915039322!GO:0000086;G2/M transition of mitotic cell cycle;0.0390221915039322!GO:0046467;membrane lipid biosynthetic process;0.0401979891886347!GO:0045926;negative regulation of growth;0.0402647396429179!GO:0016584;nucleosome positioning;0.040278723988074!GO:0030119;AP-type membrane coat adaptor complex;0.0407087683685907!GO:0030508;thiol-disulfide exchange intermediate activity;0.0408641750124722!GO:0030433;ER-associated protein catabolic process;0.0413347764187402!GO:0006515;misfolded or incompletely synthesized protein catabolic process;0.0413347764187402!GO:0003923;GPI-anchor transamidase activity;0.0415606337768922!GO:0016255;attachment of GPI anchor to protein;0.0415606337768922!GO:0042765;GPI-anchor transamidase complex;0.0415606337768922!GO:0005669;transcription factor TFIID complex;0.0419804319232832!GO:0042168;heme metabolic process;0.0424198345050976!GO:0001725;stress fiber;0.0424198345050976!GO:0032432;actin filament bundle;0.0424198345050976!GO:0032200;telomere organization and biogenesis;0.0426554376777753!GO:0000723;telomere maintenance;0.0426554376777753!GO:0007040;lysosome organization and biogenesis;0.044232350358983!GO:0006007;glucose catabolic process;0.0447027403833016!GO:0008234;cysteine-type peptidase activity;0.0449179487594237!GO:0042158;lipoprotein biosynthetic process;0.0462138752469598!GO:0051348;negative regulation of transferase activity;0.0470479865070765!GO:0007178;transmembrane receptor protein serine/threonine kinase signaling pathway;0.0470479865070765!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.0470479865070765!GO:0008632;apoptotic program;0.0472931448774427!GO:0022411;cellular component disassembly;0.0473864873892062!GO:0006778;porphyrin metabolic process;0.0475472351539915!GO:0033013;tetrapyrrole metabolic process;0.0475472351539915!GO:0008652;amino acid biosynthetic process;0.0475472351539915!GO:0042770;DNA damage response, signal transduction;0.0477445245368312!GO:0006275;regulation of DNA replication;0.0483602989281608!GO:0043161;proteasomal ubiquitin-dependent protein catabolic process;0.0483865934042806!GO:0002763;positive regulation of myeloid leukocyte differentiation;0.0485444108663274!GO:0042585;germinal vesicle;0.048700198273976!GO:0017134;fibroblast growth factor binding;0.048700198273976!GO:0008601;protein phosphatase type 2A regulator activity;0.0488257778609803!GO:0006220;pyrimidine nucleotide metabolic process;0.0489761655317747!GO:0008475;procollagen-lysine 5-dioxygenase activity;0.0494141306555511!GO:0047485;protein N-terminus binding;0.0495105752609673!GO:0051271;negative regulation of cell motility;0.0496447319862804!GO:0001953;negative regulation of cell-matrix adhesion;0.0497385998766986!GO:0005758;mitochondrial intermembrane space;0.0497385998766986
|sample_id=11561
|sample_note=Originally library704 tailing failed, the remaining sample is being rerun
|sample_sex=M
|sample_species=Human (Homo sapiens)
|sample_strain=
|sample_tissue=skin
|top_motifs=GZF1:1.6185396237;HBP1_HMGB_SSRP1_UBTF:1.57553994505;XBP1:1.56002937443;ALX4:1.43281934621;HIF1A:1.41439384866;ZNF238:1.40356258798;ESR1:1.33774108124;HES1:1.29132962851;GCM1,2:1.25078969228;PAX1,9:1.25075452774;KLF4:1.23026255981;SRF:1.13106501939;PPARG:1.10957394869;HMX1:1.10553826731;UFEwm:1.09458044841;TFAP4:1.08288672155;NKX3-1:1.07953369706;EN1,2:1.07838752023;RXR{A,B,G}:1.07641916309;SMAD1..7,9:1.06784539207;MAFB:1.04425043014;HOX{A5,B5}:1.00400123687;TEAD1:1.00110250874;NR3C1:0.999207463955;GFI1B:0.99426382889;NKX3-2:0.970093693639;NANOG{mouse}:0.969958924815;GFI1:0.947707408308;NFIX:0.941709706581;NKX2-2,8:0.935619702443;HSF1,2:0.919098400815;EBF1:0.89721990979;TP53:0.889812718633;HMGA1,2:0.882350922959;NFE2L1:0.855160437508;RXRA_VDR{dimer}:0.815813046991;SOX17:0.796915108663;MZF1:0.787120406379;ZIC1..3:0.764412553781;GTF2I:0.724361178071;PRDM1:0.711159280806;GTF2A1,2:0.704841909373;MYBL2:0.700620116157;MAZ:0.692746987586;MYB:0.684621911892;EP300:0.658697624632;TLX1..3_NFIC{dimer}:0.623658241796;HAND1,2:0.619200921582;TAL1_TCF{3,4,12}:0.600605705107;IKZF1:0.596875434265;SPZ1:0.587367198565;MTE{core}:0.581664187151;PAX8:0.56567694152;EVI1:0.53299454628;STAT1,3:0.528035789737;ZBTB6:0.503283957686;ZNF148:0.478737894686;TFCP2:0.473371930388;NFATC1..3:0.472572490061;NR1H4:0.462618600816;TFAP2B:0.460608754081;ELK1,4_GABP{A,B1}:0.452754847939;GLI1..3:0.440549205116;ATF6:0.438992986022;YY1:0.435377896867;GATA4:0.419580098037;T:0.417760433088;TFDP1:0.416142597683;FOXL1:0.395200347171;HOX{A4,D4}:0.366657604092;XCPE1{core}:0.358079529351;LHX3,4:0.337295243993;TBP:0.322391507069;PATZ1:0.315288692123;TBX4,5:0.274044849326;HLF:0.25865125089;POU5F1:0.237852365726;NFE2L2:0.236257004527;ZNF143:0.232070934176;NR5A1,2:0.226253795708;LEF1_TCF7_TCF7L1,2:0.215613525344;PAX5:0.205445503169;E2F1..5:0.199769414199;MEF2{A,B,C,D}:0.197111014379;BACH2:0.192119942522;CEBPA,B_DDIT3:0.184867466239;POU3F1..4:0.183921638983;FOX{I1,J2}:0.167828262594;AHR_ARNT_ARNT2:0.151137556496;NRF1:0.149565107795;TFAP2{A,C}:0.146597025411;RREB1:0.141426986984;STAT2,4,6:0.110232617197;ZNF384:0.0795578546486;SOX5:0.0681078453208;MTF1:0.0473235146862;HOX{A6,A7,B6,B7}:0.0278141996716;TOPORS:0.0243060761048;TLX2:0.0212360258841;ZNF423:-0.00617170533067;CRX:-0.0158377884646;ARID5B:-0.0306401941938;FOS_FOS{B,L1}_JUN{B,D}:-0.0337321543535;FOSL2:-0.0400965680893;PRRX1,2:-0.0410910299501;NKX6-1,2:-0.0547510024879;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.0810392412786;NHLH1,2:-0.105543944026;NFE2:-0.115006553804;NR6A1:-0.122322607847;TEF:-0.124422760868;NFY{A,B,C}:-0.129519459607;NKX2-3_NKX2-5:-0.132036687028;ELF1,2,4:-0.138173605731;CREB1:-0.139014696931;PDX1:-0.145853351247;MED-1{core}:-0.148425610542;FOXA2:-0.159740764229;SOX2:-0.164205835174;DMAP1_NCOR{1,2}_SMARC:-0.166067985954;DBP:-0.176961352702;CDC5L:-0.189104061675;EGR1..3:-0.190741951129;JUN:-0.205397191826;HNF1A:-0.22869689139;RUNX1..3:-0.250622835785;RFX1:-0.254660384981;MYFfamily:-0.254983836067;HIC1:-0.262717939774;ALX1:-0.275701708168;SPI1:-0.286035894939;TGIF1:-0.298587026715;REST:-0.301340562502;POU1F1:-0.304678524339;ESRRA:-0.336867720115;PAX3,7:-0.338834609226;FOXN1:-0.357324070565;AR:-0.357570654439;ATF5_CREB3:-0.3704951865;NFIL3:-0.382877695796;FOX{D1,D2}:-0.398438783384;FOXQ1:-0.398920805826;ETS1,2:-0.403655260949;PBX1:-0.404061258951;OCT4_SOX2{dimer}:-0.419653175085;PAX2:-0.433586419752;IRF1,2:-0.439831884577;FOXP3:-0.442291485031;PAX4:-0.449656845622;BPTF:-0.451312142366;POU6F1:-0.451432517029;NFKB1_REL_RELA:-0.46309387665;VSX1,2:-0.463750036222;HNF4A_NR2F1,2:-0.470330925729;SOX{8,9,10}:-0.485254528848;SP1:-0.488390803186;ATF4:-0.500106885691;FOXM1:-0.511019297149;NKX2-1,4:-0.523125892974;NANOG:-0.526729582386;FOXO1,3,4:-0.527312639203;SPIB:-0.540750930698;ZFP161:-0.556903548326;AIRE:-0.563884486376;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.57446344148;BREu{core}:-0.611862327264;SREBF1,2:-0.628966551003;PAX6:-0.643580085175;GATA6:-0.666574710017;PITX1..3:-0.671978598406;ADNP_IRX_SIX_ZHX:-0.673152639837;POU2F1..3:-0.686171251239;ONECUT1,2:-0.717039765611;CUX2:-0.722113536321;IRF7:-0.727868122444;FOXP1:-0.737155719241;FOXD3:-0.748562009164;ATF2:-0.807219691694;STAT5{A,B}:-0.808873921529;ZEB1:-0.809776109289;SNAI1..3:-0.838034663357;RBPJ:-0.909053426662;bHLH_family:-0.909884027654;IKZF2:-0.935168288759;ZBTB16:-0.955888201495;RFX2..5_RFXANK_RFXAP:-0.961938816436;CDX1,2,4:-1.07511426357;HOXA9_MEIS1:-1.08377961013;FOX{F1,F2,J1}:-1.12864018461;RORA:-1.15946108508;LMO2:-1.27660418376;MYOD1:-1.65231384015
|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11561-120D4;search_select_hide=table117:FF:11561-120D4
}}
}}

Latest revision as of 18:09, 4 June 2020

Name:Fibroblast - skin normal, donor2
Species:Human (Homo sapiens)
Library ID:CNhs11914
Sample type:primary cells
Genomic View: UCSC
RefEX:Specific genes
FANTOM CAT:1, 2, 3, 4
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissueskin
dev stageNA
sexM
age3 year old child
cell typefibroblast
cell lineNA
companyCoriell
collaborationSplicing (contact: Al Forrest)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot numberNA
catalog numbercustom
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-TRIzol-ethanol-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00004977
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs11914 CAGE DRX008288 DRR009160
Accession ID Hg19

Library idBAMCTSS
CNhs11914 DRZ000585 DRZ001970
Accession ID Hg38

Library idBAMCTSS
CNhs11914 DRZ011935 DRZ013320
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis-0.123
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma0.23
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0.587
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19-0.0476
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle-0.3
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140.0404
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0.365
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed-0.237
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte-0.285
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0.226
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0.143
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus0.0351
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0.0404
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0.25
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD80
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth0
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small0.116
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0.172
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0.635
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0.143
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0.88
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0.455
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0.604
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0.625
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs11914

Jaspar motifP-value
MA0002.20.241
MA0003.10.641
MA0004.10.00118
MA0006.10.0574
MA0007.10.756
MA0009.10.545
MA0014.10.195
MA0017.10.148
MA0018.20.00112
MA0019.10.389
MA0024.10.571
MA0025.10.0717
MA0027.10.805
MA0028.10.472
MA0029.10.419
MA0030.10.054
MA0031.10.0987
MA0035.20.0535
MA0038.10.702
MA0039.20.0592
MA0040.10.441
MA0041.10.661
MA0042.10.951
MA0043.10.00347
MA0046.10.618
MA0047.20.26
MA0048.10.0041
MA0050.14.90195e-5
MA0051.10.00656
MA0052.10.228
MA0055.10.0609
MA0057.10.348
MA0058.16.07594e-4
MA0059.10.209
MA0060.10.0982
MA0061.10.0584
MA0062.20.168
MA0065.20.116
MA0066.10.34
MA0067.10.0314
MA0068.10.61
MA0069.10.0139
MA0070.10.442
MA0071.10.746
MA0072.10.777
MA0073.10.942
MA0074.10.881
MA0076.10.391
MA0077.10.826
MA0078.10.899
MA0079.20.726
MA0080.22.36182e-7
MA0081.10.0218
MA0083.10.00308
MA0084.10.313
MA0087.10.971
MA0088.10.684
MA0090.16.42359e-4
MA0091.10.209
MA0092.10.223
MA0093.10.00621
MA0099.20.326
MA0100.10.6
MA0101.18.58832e-5
MA0102.20.0726
MA0103.13.59354e-6
MA0104.22.6611e-4
MA0105.10.464
MA0106.10.186
MA0107.12.08465e-4
MA0108.20.0211
MA0111.10.0623
MA0112.20.0971
MA0113.10.606
MA0114.10.0282
MA0115.10.273
MA0116.10.403
MA0117.10.913
MA0119.10.3
MA0122.10.739
MA0124.10.861
MA0125.10.746
MA0131.10.897
MA0135.10.638
MA0136.14.77179e-7
MA0137.20.838
MA0138.20.423
MA0139.10.608
MA0140.10.294
MA0141.10.474
MA0142.10.2
MA0143.10.737
MA0144.10.65
MA0145.10.103
MA0146.10.741
MA0147.10.00779
MA0148.10.226
MA0149.10.45
MA0150.10.0572
MA0152.10.0101
MA0153.10.449
MA0154.10.549
MA0155.10.619
MA0156.10.0192
MA0157.10.351
MA0159.10.81
MA0160.10.0295
MA0162.10.082
MA0163.10.0663
MA0164.10.753
MA0258.10.809
MA0259.10.29



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs11914

Novel motifP-value
10.831
100.905
1000.242
1010.137
1020.232
1030.541
1040.706
1050.551
1060.847
1070.917
1080.736
1090.846
110.796
1100.49
1110.385
1120.945
1130.00275
1140.813
1150.59
1160.582
1170.668
1180.442
1190.343
120.646
1200.675
1210.604
1220.209
1235.25223e-6
1240.313
1250.912
1260.241
1270.519
1280.401
1290.455
130.814
1300.161
1310.521
1320.382
1330.552
1340.0723
1350.11
1360.119
1370.618
1380.382
1390.103
140.302
1400.0749
1410.0853
1420.393
1430.869
1440.788
1450.526
1460.861
1470.39
1480.0793
1490.00777
150.363
1500.219
1510.389
1520.0344
1530.247
1540.584
1550.00279
1560.881
1570.0975
1580.00795
1590.326
160.225
1600.681
1610.0901
1620.559
1630.877
1640.752
1650.112
1660.187
1670.148
1680.397
1690.126
170.999
180.107
190.0127
20.23
200.424
210.134
220.501
230.855
240.359
250.499
260.504
270.867
280.639
290.708
30.588
300.242
310.974
322.48119e-8
330.574
340.87
350.442
360.0624
370.105
380.345
390.316
40.991
400.0785
410.91
420.517
430.772
440.357
450.895
460.901
470.988
480.912
490.282
50.814
500.335
510.624
520.886
530.227
540.915
550.174
560.564
570.594
580.165
590.253
60.606
600.393
610.398
620.49
630.706
640.564
650.999
660.465
670.588
680.483
690.502
70.275
700.141
710.828
720.482
730.0545
740.532
750.949
760.161
770.011
780.127
790.0239
80.777
800.997
810.267
820.992
830.183
840.275
850.471
860.164
870.0533
880.59
890.107
90.593
900.441
910.761
920.759
930.278
940.715
950.564
960.828
970.61
980.181
990.0682



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs11914


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0002320 (connective tissue cell)
0002371 (somatic cell)
0000255 (eukaryotic cell)
0000057 (fibroblast)
0002620 (skin fibroblast)

UBERON: Anatomy
0000468 (multi-cellular organism)
0002097 (skin of body)
0002199 (integument)
0002384 (connective tissue)
0000479 (tissue)
0000062 (organ)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0003102 (surface structure)
0002416 (integumental system)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000057 (fibroblast sample)
0000250 (human fibroblast of skin sample)
0000001 (sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000134 (mesenchymal cell)

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