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(Created page with "{{f5samples |id=FF:11566-120D9 |name=Mast cell, donor3 (heparinase treated) |sample_id=11566 |rna_tube_id=120D9 |rna_box=120 |rna_position=D9 |sample_cell_lot= |sample...")
 
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{{f5samples
{{f5samples
|id=FF:11566-120D9
|DRA_sample_Accession=CAGE@SAMD00005069
|name=Mast cell, donor3 (heparinase treated)
|DRA_sample_Accession_RNASeq=sRNA-Seq@SAMD00005069
|sample_id=11566
|accession_numbers=CAGE;DRX008333;DRR009205;DRZ000630;DRZ002015;DRZ011980;DRZ013365
|rna_tube_id=120D9
|accession_numbers_RNASeq=sRNA-Seq;DRX037237;DRR041603;DRZ007245
|rna_box=120
|ancestors_in_anatomy_facet=
|rna_position=D9
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000988,CL:0000548,CL:0000763,CL:0000151,CL:0002371,CL:0000766,CL:0002274,CL:0000219,CL:0000163,CL:0000457,CL:0000738,CL:0000255,CL:0000097
|sample_cell_lot=
|sample_cell_catalog=
|sample_company=
|rna_lot_number=BsMC-T
|rna_catalog_number=
|sample_species=Human (Homo sapiens)
|sample_strain=
|sample_dev_stage=41 years old adult
|sample_tissue=skin
|sample_donor(cell lot)=
|sample_sex=female
|sample_age=76
|sample_ethnicity=
|rna_rin=
|rna_od260/230=1.93000
|rna_od260/280=1.98000
|sample_cell_type=mast cell
|sample_cell_line=
|sample_collaboration=Sven Guhl (Charite Germany)
|sample_experimental_condition=control, untreated cells
|sample_disease=
|rna_sample_type=total RNA
|rna_extraction_protocol=OP-RNA-extraction-totalRNA-TRIzol-ethanol-v1.0
|rna_weight_ug=7.86288
|rna_concentration=0.32762
|sample_note=
|profile_hcage=CNhs12593,LSID912,release011,MAPPING
|profile_cagescan=,,,
|profile_srnaseq=SRhi10014,,,
|profile_rnaseq=,,,
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000004,CL:0000012,CL:0000034,CL:0000037,CL:0000048,CL:0000049,CL:0000063,CL:0000097,CL:0000134,CL:0000144,CL:0000151,CL:0000163,CL:0000219,CL:0000255,CL:0000457,CL:0000548,CL:0000557,CL:0000566,CL:0000723,CL:0000738,CL:0000763,CL:0000766,CL:0000831,CL:0000837,CL:0000839,CL:0000988,CL:0001012,CL:0002028,CL:0002031,CL:0002032,CL:0002191,CL:0002274,CL:0002320,CL:0002371
|ancestors_in_anatomy_facet=UBERON:0000061,UBERON:0000062,UBERON:0000465,UBERON:0000467,UBERON:0000468,UBERON:0000479,UBERON:0000480,UBERON:0000922,UBERON:0000923,UBERON:0000926,UBERON:0001062,UBERON:0001434,UBERON:0001474,UBERON:0002050,UBERON:0002193,UBERON:0002204,UBERON:0002371,UBERON:0002384,UBERON:0002390,UBERON:0002405,UBERON:0002532,UBERON:0004120,UBERON:0004765,UBERON:0005423
|ancestors_in_disease_facet=
|ancestors_in_disease_facet=
|sample_description=
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000001,FF:0000260,FF:0000261
 
|comment=
|created_by=
|creation_date=
|data_phase=2
|datafreeze_phase=2
|def=
|expression_enrichment_score=chr3:128212033..128212051,-!p1@GATA2!3.42!2645.90!GATA2;;chr19:45971246..45971265,+!p1@FOSB!2.59!6739.19!FOSB;;chr14:75988831..75988847,+!p2@BATF!2.51!322.54!BATF;;chrX:106960285..106960299,-!p1@TSC22D3!2.20!3926.26!TSC22D3;;chr21:39870339..39870443,-!p1@ERG!2.11!128.70!ERG;;chr14:75988771..75988826,+!p1@BATF!2.10!163.86!BATF;;chr7:50344289..50344323,+!p1@IKZF1!2.04!108.95!IKZF1;;chr14:75988851..75988862,+!p3@BATF!2.00!99.30!BATF;;chr7:50344251..50344288,+!p3@IKZF1!1.98!95.26!IKZF1;;chr14:35872453..35872485,-!p2@NFKBIA!1.97!219.64!NFKBIA;;chr6:135502501..135502546,+!p1@MYB!1.90!92.53!MYB;;chr12:52445218..52445237,+!p1@NR4A1!1.87!866.31!NR4A1;;chr14:75745523..75745537,+!p1@FOS!1.86!8044.34!FOS;;chrX:48644984..48645005,+!p1@GATA1!1.85!70.47!GATA1;;chr7:28725740..28725778,+!p1@CREB5!1.82!547.37!CREB5;;chr3:63953435..63953499,+!p1@ATXN7!1.80!62.40!ATXN7;;chr20:50159198..50159299,-!p1@NFATC2!1.79!86.33!NFATC2;;chr19:18391615..18391637,-!p5@JUND!1.78!76.67!JUND;;chr9:3525727..3525828,-!p2@RFX3!1.76!140.52!RFX3;;chr14:74256787..74256858,-!p6@C14orf43!1.75!55.05!C14orf43;;chr2:157189180..157189290,-!p1@NR4A2!1.73!263.31!NR4A2;;chr7:50343634..50343717,+!p2@IKZF1!1.73!53.18!IKZF1;;chr2:145277640..145277771,-!p1@ZEB2!1.70!616.98!ZEB2;;chr14:75746340..75746368,+!p3@FOS!1.69!47.56!FOS;;chr18:77155922..77155939,+!p1@NFATC1!1.68!123.22!NFATC1;;chr19:54041669..54041697,+!p2@ZNF331!1.68!46.69!ZNF331;;chr7:28725715..28725727,+!p3@CREB5!1.67!53.47!CREB5;;chr3:128205876..128205904,-!p4@GATA2!1.65!44.10!GATA2;;chr1:59249688..59249703,-!p3@JUN!1.64!243.27!JUN;;chr7:138666053..138666146,-!p1@KIAA1549!1.63!165.74!KIAA1549;;chr17:38497662..38497713,+!p4@RARA!1.63!48.42!RARA;;chr14:35873947..35873965,-!p1@NFKBIA!1.62!2425.68!NFKBIA;;chr14:75746722..75746777,+!p2@FOS!1.62!52.03!FOS;;chr1:92951607..92951661,-!p1@GFI1!1.62!40.64!GFI1;;chr2:61108695..61108753,+!p1@REL!1.60!254.80!REL;;chr3:69788576..69788648,+!p1@MITF!1.60!199.03!MITF;;chr11:47400078..47400106,-!p1@SPI1!1.59!38.19!SPI1;;chr14:35872962..35873025,-!p3@NFKBIA!1.57!88.20!NFKBIA;;chr1:47697881..47697910,-!p4@TAL1!1.55!34.44!TAL1;;chr19:13213511..13213545,-!p2@LYL1!1.54!36.61!LYL1;;chr1:47695003..47695042,-!p2@TAL1!1.53!33.00!TAL1;;chr12:124968706..124968748,-!p18@NCOR2!1.52!32.43!NCOR2;;chr3:128206762..128206781,-!p2@GATA2!1.51!187.50!GATA2;;chr19:54058073..54058088,+!p1@ZNF331!1.51!31.71!ZNF331;;chr3:128205779..128205797,-!p5@GATA2!1.51!31.27!GATA2;;chr9:73028814..73028895,-!p1@KLF9!1.50!287.09!KLF9;;chr3:39195075..39195088,-!p1@CSRNP1!1.50!182.60!CSRNP1;;chr3:128205801..128205819,-!p6@GATA2!1.50!30.55!GATA2;;chr6:15401104..15401166,+!p5@JARID2!1.50!30.55!JARID2;;chr1:158985493..158985535,+!p4@IFI16!1.48!44.10!IFI16;;chr2:145271342..145271377,-!p5@ZEB2!1.48!28.97!ZEB2;;chr19:45252008..45252024,+!p2@BCL3!1.47!92.38!BCL3;;chr3:39195037..39195069,-!p2@CSRNP1!1.46!167.04!CSRNP1;;chr3:141150883..141150961,+!p6@ZBTB38!1.45!27.24!ZBTB38;;chrX:2418949..2419024,-!p1@DHRSX,p1@ZBED1!1.44!26.37!ZBED1;;chr7:17338324..17338341,+!p3@AHR!1.43!84.89!AHR;;chr1:25256756..25256774,-!p1@RUNX3!1.42!46.98!RUNX3;;chr13:41593425..41593480,-!p1@ELF1!1.41!151.76!ELF1;;chr19:45972701..45972774,+!p2@FOSB!1.41!33.72!FOSB;;chr12:52448420..52448460,+!p5@NR4A1!1.40!24.36!NR4A1;;chr14:35874077..35874091,-!p8@NFKBIA!1.40!23.92!NFKBIA;;chr7:17338266..17338282,+!p1@AHR!1.38!236.93!AHR;;chr22:38597987..38598021,+!p2@MAFF!1.38!136.77!MAFF;;chr1:204042233..204042249,+!p1@SOX13!1.37!137.92!SOX13;;chr18:22932080..22932170,-!p1@ZNF521!1.35!88.49!ZNF521;;chr8:22550982..22550999,-!p1@EGR3!1.35!59.52!EGR3;;chr19:18392422..18392440,-!p1@JUND!1.34!2750.24!JUND;;chr2:208031542..208031595,-!p2@KLF7!1.34!143.83!KLF7;;chr8:81397820..81397836,+!p2@ZBTB10!1.34!25.94!ZBTB10;;chr9:135854091..135854159,+!p1@GFI1B!1.34!21.04!GFI1B;;chr1:59249707..59249727,-!p1@JUN!1.33!817.88!JUN;;chr10:104154246..104154347,+!p3@NFKB2!1.33!120.20!NFKB2;;chr6:135502408..135502459,+!p2@MYB!1.33!23.35!MYB;;chr3:101568349..101568365,+!p1@NFKBIZ!1.31!984.63!NFKBIZ;;chr6:45390343..45390388,+!p10@RUNX2!1.30!25.37!RUNX2;;chr1:158985469..158985489,+!p7@IFI16!1.30!22.19!IFI16;;chr7:138665870..138665905,-!p4@KIAA1549!1.30!18.74!KIAA1549;;chr14:35873101..35873119,-!p6@NFKBIA!1.29!24.64!NFKBIA;;chr12:72056800..72056834,+!p1@THAP2!1.28!24.36!THAP2;;chr12:52448151..52448200,+!p8@NR4A1!1.28!18.16!NR4A1;;chr12:52431016..52431071,+!p4@NR4A1!1.26!20.18!NR4A1;;chr19:54041645..54041661,+!p5@ZNF331!1.26!17.29!ZNF331;;chr10:3827389..3827408,-!p1@KLF6!1.24!1213.06!KLF6;;chr19:16435625..16435682,+!p1@KLF2!1.24!509.75!KLF2;;chr4:103422499..103422632,+!p1@NFKB1!1.24!335.66!NFKB1;;chr9:73029219..73029289,-!p2@KLF9!1.24!49.29!KLF9;;chr6:108882109..108882173,+!p2@FOXO3!1.23!84.02!FOXO3;;chr2:178128250..178128293,-!p6@NFE2L2!1.23!40.21!NFE2L2;;chr12:52448213..52448262,+!p6@NR4A1!1.23!16.00!NR4A1;;chr2:43453734..43453751,-!p1@ZFP36L2!1.22!1605.06!ZFP36L2;;chr1:59249732..59249749,-!p2@JUN!1.22!187.21!JUN;;chr2:97202480..97202499,+!p1@ARID5A!1.22!154.7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|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000097;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000151;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000222;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000738;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000763;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000766;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000988;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002193;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002390;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002405
|ffid_belonging_in_development=CL:0000049,CL:0000134
|fonse_cell_line=
|fonse_cell_line=
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|fonse_cell_line_closure=
Line 67: Line 43:
|fonse_treatment=
|fonse_treatment=
|fonse_treatment_closure=
|fonse_treatment_closure=
|has_quality=
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Mast%2520cell%252c%2520donor3.CNhs12593.11566-120D9.hg19.nobarcode.bam
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Mast%2520cell%252c%2520donor3.CNhs12593.11566-120D9.hg19.ctss.bed.gz
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Mast%2520cell%252c%2520donor3.CNhs12593.11566-120D9.hg19.nobarcode.rdna.fa.gz
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Mast%2520cell%252c%2520donor3.CNhs12593.11566-120D9.hg38.nobarcode.bam
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Mast%2520cell%252c%2520donor3.CNhs12593.11566-120D9.hg38.nobarcode.ctss.bed.gz
|id=FF:11566-120D9
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|is_obsolete=
|library_id=CNhs12593
|library_id_phase_based=2:CNhs12593
|microRNAs=
|microRNAs_nn=
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11566
|microRNAs_nonnovel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#srna;sample;SRhi10014.AGTTCC.11566
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11566
|microRNAs_novel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer_novel/#/human#srna;sample;SRhi10014.AGTTCC.11566
|name=Mast cell, donor3
|namespace=FANTOM5
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|profile_hcage=CNhs12593,LSID912,release011,COMPLETED
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|rna_box=120
|rna_catalog_number=
|rna_concentration=0.32762
|rna_extraction_protocol=OP-RNA-extraction-totalRNA-TRIzol-ethanol-v1.0
|rna_lot_number=BsMC-T
|rna_od260/230=1.93
|rna_od260/280=1.98
|rna_position=D9
|rna_rin=
|rna_sample_type=total RNA
|rna_tube_id=120D9
|rna_weight_ug=7.9
|rnaseq_library_id=SRhi10014.AGTTCC
|sample_age=76
|sample_category=primary cells
|sample_cell_catalog=
|sample_cell_line=
|sample_cell_lot=
|sample_cell_type=mast cell
|sample_collaboration=Sven Guhl (Charite Germany)
|sample_company=
|sample_description=
|sample_dev_stage=41 years old adult
|sample_disease=
|sample_donor(cell lot)=
|sample_ethnicity=
|sample_experimental_condition=control, untreated cells
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;1.01285876609181e-229!GO:0043227;membrane-bound organelle;7.2107081423846e-196!GO:0043231;intracellular membrane-bound organelle;1.55354176278952e-195!GO:0043226;organelle;2.56644415589759e-192!GO:0043229;intracellular organelle;1.06303696770873e-191!GO:0005737;cytoplasm;1.49598050135993e-134!GO:0005634;nucleus;3.30402329563501e-107!GO:0043170;macromolecule metabolic process;4.02229602511678e-103!GO:0044422;organelle part;1.48239091445614e-99!GO:0044446;intracellular organelle part;5.07093675010682e-98!GO:0044238;primary metabolic process;1.23563645130328e-96!GO:0044237;cellular metabolic process;1.56587757533624e-95!GO:0044444;cytoplasmic part;6.70163412813404e-87!GO:0043283;biopolymer metabolic process;5.85432805212379e-79!GO:0005515;protein binding;3.56746021925883e-73!GO:0010467;gene expression;2.02236401322472e-67!GO:0032991;macromolecular complex;2.40173884131387e-64!GO:0044428;nuclear part;4.59506644842038e-64!GO:0003723;RNA binding;2.65680651305278e-62!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;4.75274440551634e-60!GO:0030529;ribonucleoprotein complex;1.56016614390703e-57!GO:0043233;organelle lumen;1.60123374183678e-52!GO:0031974;membrane-enclosed lumen;1.60123374183678e-52!GO:0003676;nucleic acid binding;9.51088819639356e-50!GO:0033036;macromolecule localization;8.04169021192225e-48!GO:0015031;protein transport;1.08856588152364e-46!GO:0045184;establishment of protein localization;1.32842981220089e-44!GO:0019538;protein metabolic process;2.54772342728155e-44!GO:0008104;protein localization;3.55252756122794e-44!GO:0016070;RNA metabolic process;3.90474973988132e-44!GO:0031981;nuclear lumen;1.11248976782864e-41!GO:0044267;cellular protein metabolic process;1.11248976782864e-41!GO:0044260;cellular macromolecule metabolic process;9.78496947471665e-41!GO:0006396;RNA processing;4.01830704969665e-40!GO:0016071;mRNA metabolic process;4.54419136590304e-38!GO:0016043;cellular component organization and biogenesis;6.19866861720437e-37!GO:0031090;organelle membrane;2.59124247549154e-35!GO:0008380;RNA splicing;3.15252863619937e-34!GO:0005739;mitochondrion;3.9608077557812e-34!GO:0006397;mRNA processing;4.05411404343924e-32!GO:0006412;translation;4.58955893819333e-32!GO:0046907;intracellular transport;1.17865249131246e-31!GO:0043234;protein complex;1.32274362468678e-31!GO:0005829;cytosol;7.45664553735723e-30!GO:0050794;regulation of cellular process;2.05281779507317e-29!GO:0005840;ribosome;2.10036577228729e-29!GO:0006886;intracellular protein transport;1.07957032524369e-28!GO:0005654;nucleoplasm;8.84654605616003e-28!GO:0006996;organelle organization and biogenesis;2.95337059427737e-26!GO:0031967;organelle envelope;2.80634432488446e-25!GO:0006259;DNA metabolic process;5.35514196738761e-25!GO:0003735;structural constituent of ribosome;5.53686670510055e-25!GO:0031975;envelope;5.8450353342384e-25!GO:0008134;transcription factor binding;5.86716341126295e-25!GO:0065003;macromolecular complex assembly;7.43909739895143e-25!GO:0000166;nucleotide binding;7.79326074588721e-25!GO:0009059;macromolecule biosynthetic process;3.12896057599455e-24!GO:0005681;spliceosome;4.31784906906221e-24!GO:0033279;ribosomal subunit;8.01498508358258e-24!GO:0044451;nucleoplasm part;6.76042273839437e-23!GO:0005830;cytosolic ribosome (sensu Eukaryota);9.45177901272812e-23!GO:0019222;regulation of metabolic process;1.18429098544242e-22!GO:0044429;mitochondrial part;1.49606138976026e-22!GO:0043412;biopolymer modification;1.82183346970939e-22!GO:0051649;establishment of cellular localization;3.06339582630505e-22!GO:0050789;regulation of biological process;3.5832332224817e-22!GO:0051641;cellular localization;9.4885575450396e-22!GO:0022607;cellular component assembly;1.75670550907977e-21!GO:0022613;ribonucleoprotein complex biogenesis and assembly;2.30334937070771e-21!GO:0006512;ubiquitin cycle;8.78627473543202e-21!GO:0009058;biosynthetic process;1.87759802295618e-20!GO:0006464;protein modification process;1.90971630761472e-20!GO:0043687;post-translational protein modification;3.64142966128412e-20!GO:0044249;cellular biosynthetic process;6.95618406366069e-20!GO:0031323;regulation of cellular metabolic process;2.4170032314707e-19!GO:0006350;transcription;2.90847046150367e-19!GO:0044445;cytosolic part;7.75071844180564e-19!GO:0010468;regulation of gene expression;5.64119066382421e-18!GO:0032553;ribonucleotide binding;7.99380942271374e-18!GO:0032555;purine ribonucleotide binding;7.99380942271374e-18!GO:0043228;non-membrane-bound organelle;1.05742601246127e-17!GO:0043232;intracellular non-membrane-bound organelle;1.05742601246127e-17!GO:0048770;pigment granule;4.95054737026811e-17!GO:0042470;melanosome;4.95054737026811e-17!GO:0032774;RNA biosynthetic process;5.3935371440363e-17!GO:0019219;regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;6.05624008479019e-17!GO:0003712;transcription cofactor activity;6.47027580337387e-17!GO:0006351;transcription, DNA-dependent;6.84379976933716e-17!GO:0051603;proteolysis involved in cellular protein catabolic process;1.18789537367873e-16!GO:0006511;ubiquitin-dependent protein catabolic process;1.55902026926288e-16!GO:0017076;purine nucleotide binding;1.56891278725488e-16!GO:0005740;mitochondrial envelope;1.57592623383676e-16!GO:0019941;modification-dependent protein catabolic process;1.77253512113535e-16!GO:0043632;modification-dependent macromolecule catabolic process;1.77253512113535e-16!GO:0005794;Golgi apparatus;2.37763144502083e-16!GO:0044257;cellular protein catabolic process;3.01952279381234e-16!GO:0016462;pyrophosphatase activity;4.55668965894674e-16!GO:0006366;transcription from RNA polymerase II promoter;5.00464079546844e-16!GO:0016192;vesicle-mediated transport;5.34123837012273e-16!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;6.10942744979073e-16!GO:0017111;nucleoside-triphosphatase activity;6.36489351188904e-16!GO:0065007;biological regulation;6.5138572608542e-16!GO:0016817;hydrolase activity, acting on acid anhydrides;7.02615739888102e-16!GO:0022618;protein-RNA complex assembly;1.12122741670892e-15!GO:0012505;endomembrane system;1.49217815127274e-15!GO:0016874;ligase activity;1.60470633584141e-15!GO:0048523;negative regulation of cellular process;1.84653607106463e-15!GO:0031966;mitochondrial membrane;2.17448212309496e-15!GO:0019866;organelle inner membrane;2.27256505710295e-15!GO:0016604;nuclear body;2.36718765331184e-15!GO:0045449;regulation of transcription;2.43121182656189e-15!GO:0006325;establishment and/or maintenance of chromatin architecture;3.23156295514816e-15!GO:0012501;programmed cell death;6.4239036521453e-15!GO:0006915;apoptosis;8.68525719653954e-15!GO:0006355;regulation of transcription, DNA-dependent;1.7009385282462e-14!GO:0006119;oxidative phosphorylation;1.77376426352319e-14!GO:0044265;cellular macromolecule catabolic process;1.93449784494747e-14!GO:0006323;DNA packaging;2.15887633192275e-14!GO:0008219;cell death;2.7702857242864e-14!GO:0016265;death;2.7702857242864e-14!GO:0048519;negative regulation of biological process;4.95416215587637e-14!GO:0006793;phosphorus metabolic process;4.98572550291209e-14!GO:0006796;phosphate metabolic process;4.98572550291209e-14!GO:0008270;zinc ion binding;5.29097277612919e-14!GO:0016607;nuclear speck;7.50426214357717e-14!GO:0043285;biopolymer catabolic process;1.00539842557425e-13!GO:0006605;protein targeting;1.03665729062487e-13!GO:0005743;mitochondrial inner membrane;1.81273153855283e-13!GO:0051276;chromosome organization and biogenesis;2.22091291498934e-13!GO:0005730;nucleolus;2.45342494742124e-13!GO:0005524;ATP binding;3.11389586577183e-13!GO:0007049;cell cycle;8.9966375214484e-13!GO:0015934;large ribosomal subunit;9.11750514611606e-13!GO:0032559;adenyl ribonucleotide binding;9.37028211017102e-13!GO:0006457;protein folding;1.15386911162414e-12!GO:0008135;translation factor activity, nucleic acid binding;1.64121447126457e-12!GO:0006974;response to DNA damage stimulus;2.25084944638912e-12!GO:0016310;phosphorylation;4.38635761707303e-12!GO:0003677;DNA binding;5.35034638828806e-12!GO:0016568;chromatin modification;5.35034638828806e-12!GO:0030163;protein catabolic process;5.5508144742216e-12!GO:0015935;small ribosomal subunit;6.0451153657888e-12!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);6.37702341661956e-12!GO:0044455;mitochondrial membrane part;8.38062940356334e-12!GO:0000398;nuclear mRNA splicing, via spliceosome;1.05196278050527e-11!GO:0000375;RNA splicing, via transesterification reactions;1.05196278050527e-11!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;1.05196278050527e-11!GO:0030554;adenyl nucleotide binding;1.75549917353039e-11!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);1.94031522016179e-11!GO:0048193;Golgi vesicle transport;2.19450772105627e-11!GO:0016563;transcription activator activity;2.73667884096642e-11!GO:0005768;endosome;3.10675972993824e-11!GO:0006913;nucleocytoplasmic transport;5.41681011752371e-11!GO:0007242;intracellular signaling cascade;7.14971381716779e-11!GO:0051169;nuclear transport;8.80748444805217e-11!GO:0009057;macromolecule catabolic process;1.02272825850405e-10!GO:0007264;small GTPase mediated signal transduction;1.52228192020037e-10!GO:0003713;transcription coactivator activity;1.78537300576213e-10!GO:0007243;protein kinase cascade;1.8480568814239e-10!GO:0016564;transcription repressor activity;1.91260697050446e-10!GO:0016772;transferase activity, transferring phosphorus-containing groups;2.39095192297474e-10!GO:0006413;translational initiation;3.85100448015939e-10!GO:0006446;regulation of translational initiation;4.85451299294135e-10!GO:0031324;negative regulation of cellular metabolic process;6.14369430477843e-10!GO:0006281;DNA repair;6.27152171106927e-10!GO:0046914;transition metal ion binding;8.1690064780528e-10!GO:0008639;small protein conjugating enzyme activity;9.03919697128427e-10!GO:0005746;mitochondrial respiratory chain;9.73458189824356e-10!GO:0005635;nuclear envelope;1.44507867636254e-09!GO:0004842;ubiquitin-protein ligase activity;1.53724776311978e-09!GO:0003743;translation initiation factor activity;1.89589580473207e-09!GO:0000502;proteasome complex (sensu Eukaryota);2.17737190737622e-09!GO:0016481;negative regulation of transcription;3.57344683849389e-09!GO:0019787;small conjugating protein ligase activity;4.63305978652252e-09!GO:0051082;unfolded protein binding;5.10168889109659e-09!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;5.61121943551899e-09!GO:0006333;chromatin assembly or disassembly;6.84074822959204e-09!GO:0009892;negative regulation of metabolic process;7.76819417324931e-09!GO:0051726;regulation of cell cycle;8.31839139323275e-09!GO:0031965;nuclear membrane;8.46870701499082e-09!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;1.08606487128083e-08!GO:0000074;regulation of progression through cell cycle;1.15678600304979e-08!GO:0044248;cellular catabolic process;1.40499683825603e-08!GO:0043566;structure-specific DNA binding;1.50404973093679e-08!GO:0050136;NADH dehydrogenase (quinone) activity;1.698905089774e-08!GO:0003954;NADH dehydrogenase activity;1.698905089774e-08!GO:0008137;NADH dehydrogenase (ubiquinone) activity;1.698905089774e-08!GO:0065004;protein-DNA complex assembly;2.19797038652489e-08!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;2.23493336536464e-08!GO:0022402;cell cycle process;2.45370417981138e-08!GO:0005783;endoplasmic reticulum;2.64721881110444e-08!GO:0031980;mitochondrial lumen;2.70245856784728e-08!GO:0005759;mitochondrial matrix;2.70245856784728e-08!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;3.72463075446714e-08!GO:0004386;helicase activity;3.91366889515293e-08!GO:0017038;protein import;3.93323187952718e-08!GO:0016881;acid-amino acid ligase activity;4.10507124420799e-08!GO:0045786;negative regulation of progression through cell cycle;4.52145152302709e-08!GO:0009719;response to endogenous stimulus;4.66201525844823e-08!GO:0003924;GTPase activity;5.07108501458441e-08!GO:0042981;regulation of apoptosis;5.20557212631921e-08!GO:0016740;transferase activity;5.6257285164062e-08!GO:0044431;Golgi apparatus part;6.25083340958082e-08!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;6.68773813668581e-08!GO:0043067;regulation of programmed cell death;7.10067399703479e-08!GO:0005525;GTP binding;7.35279573490264e-08!GO:0007249;I-kappaB kinase/NF-kappaB cascade;7.44259621110822e-08!GO:0050657;nucleic acid transport;7.69096328275102e-08!GO:0051236;establishment of RNA localization;7.69096328275102e-08!GO:0050658;RNA transport;7.69096328275102e-08!GO:0006357;regulation of transcription from RNA polymerase II promoter;7.83557827881274e-08!GO:0006403;RNA localization;1.1626776220695e-07!GO:0005694;chromosome;1.24685242364045e-07!GO:0019899;enzyme binding;1.49092612710573e-07!GO:0008565;protein transporter activity;1.93682993933955e-07!GO:0044453;nuclear membrane part;2.00546795137213e-07!GO:0004674;protein serine/threonine kinase activity;2.00546795137213e-07!GO:0016879;ligase activity, forming carbon-nitrogen bonds;2.11326834872373e-07!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;2.2599273764429e-07!GO:0019829;cation-transporting ATPase activity;2.27554042352977e-07!GO:0016887;ATPase activity;2.32693107614406e-07!GO:0042775;organelle ATP synthesis coupled electron transport;2.34216173890265e-07!GO:0042773;ATP synthesis coupled electron transport;2.34216173890265e-07!GO:0031982;vesicle;2.67678567022808e-07!GO:0042623;ATPase activity, coupled;2.89607543649274e-07!GO:0030964;NADH dehydrogenase complex (quinone);3.11602898934729e-07!GO:0045271;respiratory chain complex I;3.11602898934729e-07!GO:0005747;mitochondrial respiratory chain complex I;3.11602898934729e-07!GO:0030120;vesicle coat;3.43255533018676e-07!GO:0030662;coated vesicle membrane;3.43255533018676e-07!GO:0042254;ribosome biogenesis and assembly;4.04992273257861e-07!GO:0005773;vacuole;4.14837951704697e-07!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;4.14837951704697e-07!GO:0031988;membrane-bound vesicle;4.23409955040323e-07!GO:0032561;guanyl ribonucleotide binding;4.38891915174512e-07!GO:0019001;guanyl nucleotide binding;4.38891915174512e-07!GO:0003697;single-stranded DNA binding;4.72331879334012e-07!GO:0008026;ATP-dependent helicase activity;5.27607542252969e-07!GO:0030695;GTPase regulator activity;5.30356357553253e-07!GO:0016197;endosome transport;5.55283429666769e-07!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;5.92981130157793e-07!GO:0005793;ER-Golgi intermediate compartment;8.83531133761623e-07!GO:0045892;negative regulation of transcription, DNA-dependent;9.06077276028371e-07!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;9.41273742656395e-07!GO:0015986;ATP synthesis coupled proton transport;9.88201889105266e-07!GO:0015985;energy coupled proton transport, down electrochemical gradient;9.88201889105266e-07!GO:0051246;regulation of protein metabolic process;1.01709054510396e-06!GO:0031410;cytoplasmic vesicle;1.19653162757847e-06!GO:0051170;nuclear import;1.27340707363899e-06!GO:0003714;transcription corepressor activity;1.27387370626317e-06!GO:0051028;mRNA transport;1.40424586834605e-06!GO:0043069;negative regulation of programmed cell death;1.50458486258409e-06!GO:0016023;cytoplasmic membrane-bound vesicle;1.57131215478639e-06!GO:0044440;endosomal part;1.60511305335991e-06!GO:0010008;endosome membrane;1.60511305335991e-06!GO:0006888;ER to Golgi vesicle-mediated transport;1.6315740784867e-06!GO:0006606;protein import into nucleus;1.64630451539664e-06!GO:0048475;coated membrane;1.78147750706467e-06!GO:0030117;membrane coat;1.78147750706467e-06!GO:0043066;negative regulation of apoptosis;2.21539649633905e-06!GO:0044432;endoplasmic reticulum part;2.36607810676694e-06!GO:0006260;DNA replication;2.4316642721051e-06!GO:0016301;kinase activity;2.77604263862608e-06!GO:0005643;nuclear pore;2.93561645228727e-06!GO:0005798;Golgi-associated vesicle;2.9983317375299e-06!GO:0044427;chromosomal part;3.65739869350718e-06!GO:0006916;anti-apoptosis;3.72073139213499e-06!GO:0005770;late endosome;4.20033288280165e-06!GO:0000785;chromatin;4.38865159686998e-06!GO:0005083;small GTPase regulator activity;6.19183970154279e-06!GO:0000323;lytic vacuole;6.35572116331629e-06!GO:0005764;lysosome;6.35572116331629e-06!GO:0016469;proton-transporting two-sector ATPase complex;6.60846010743894e-06!GO:0009966;regulation of signal transduction;6.90201582312239e-06!GO:0051186;cofactor metabolic process;7.66388868662471e-06!GO:0006461;protein complex assembly;8.46887342403464e-06!GO:0005769;early endosome;9.52533392077832e-06!GO:0065009;regulation of a molecular function;9.55787244584199e-06!GO:0007265;Ras protein signal transduction;9.63656600206176e-06!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;1.12925743129688e-05!GO:0005813;centrosome;1.16523580911147e-05!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;1.33387536656269e-05!GO:0009145;purine nucleoside triphosphate biosynthetic process;1.33387536656269e-05!GO:0000139;Golgi membrane;1.47731730924574e-05!GO:0030532;small nuclear ribonucleoprotein complex;1.50639143652914e-05!GO:0015078;hydrogen ion transmembrane transporter activity;1.64754675040237e-05!GO:0006754;ATP biosynthetic process;1.74008600456874e-05!GO:0006753;nucleoside phosphate metabolic process;1.74008600456874e-05!GO:0065002;intracellular protein transport across a membrane;1.82564005005108e-05!GO:0051789;response to protein stimulus;1.85728782166826e-05!GO:0006986;response to unfolded protein;1.85728782166826e-05!GO:0006364;rRNA processing;1.8834922046624e-05!GO:0016072;rRNA metabolic process;2.0961786171621e-05!GO:0042175;nuclear envelope-endoplasmic reticulum network;2.2804969070542e-05!GO:0048522;positive regulation of cellular process;2.31487417442099e-05!GO:0016773;phosphotransferase activity, alcohol group as acceptor;2.33395773230307e-05!GO:0006164;purine nucleotide biosynthetic process;2.39430226963877e-05!GO:0015630;microtubule cytoskeleton;2.40218304711008e-05!GO:0009142;nucleoside triphosphate biosynthetic process;2.50531699370776e-05!GO:0009201;ribonucleoside triphosphate biosynthetic process;2.50531699370776e-05!GO:0009152;purine ribonucleotide biosynthetic process;2.50634567956849e-05!GO:0000245;spliceosome assembly;2.63534741562792e-05!GO:0051427;hormone receptor binding;2.65572264928083e-05!GO:0005789;endoplasmic reticulum membrane;2.77276827064211e-05!GO:0003724;RNA helicase activity;2.88485424792055e-05!GO:0009260;ribonucleotide biosynthetic process;2.91865865099604e-05!GO:0031202;RNA splicing factor activity, transesterification mechanism;2.9363679898934e-05!GO:0016363;nuclear matrix;3.12365723787438e-05!GO:0032446;protein modification by small protein conjugation;3.1563051147015e-05!GO:0009259;ribonucleotide metabolic process;3.72723279265184e-05!GO:0006163;purine nucleotide metabolic process;4.01838625275084e-05!GO:0009150;purine ribonucleotide metabolic process;4.59951436582106e-05!GO:0000151;ubiquitin ligase complex;4.62478197877544e-05!GO:0035257;nuclear hormone receptor binding;4.71673281653165e-05!GO:0008047;enzyme activator activity;4.92496948790183e-05!GO:0006613;cotranslational protein targeting to membrane;4.99457749717639e-05!GO:0007005;mitochondrion organization and biogenesis;5.14130398911955e-05!GO:0006402;mRNA catabolic process;5.39920182667426e-05!GO:0005096;GTPase activator activity;5.48363176388216e-05!GO:0009205;purine ribonucleoside triphosphate metabolic process;5.6416830600194e-05!GO:0009144;purine nucleoside triphosphate metabolic process;5.6416830600194e-05!GO:0006732;coenzyme metabolic process;5.67790559698227e-05!GO:0016567;protein ubiquitination;6.1869268118109e-05!GO:0005761;mitochondrial ribosome;6.35456100847352e-05!GO:0000313;organellar ribosome;6.35456100847352e-05!GO:0033673;negative regulation of kinase activity;7.05994463950394e-05!GO:0006469;negative regulation of protein kinase activity;7.05994463950394e-05!GO:0006334;nucleosome assembly;7.17156519163936e-05!GO:0046930;pore complex;8.0790207333531e-05!GO:0031497;chromatin assembly;8.19567161946545e-05!GO:0008654;phospholipid biosynthetic process;8.38002418853326e-05!GO:0031252;leading edge;8.49333498597926e-05!GO:0005815;microtubule organizing center;8.77854963580101e-05!GO:0009199;ribonucleoside triphosphate metabolic process;9.42436566151192e-05!GO:0003702;RNA polymerase II transcription factor activity;9.77671289611119e-05!GO:0030384;phosphoinositide metabolic process;0.00010306984835598!GO:0003690;double-stranded DNA binding;0.000108741724878986!GO:0046034;ATP metabolic process;0.000110018449264625!GO:0009967;positive regulation of signal transduction;0.000123508830644458!GO:0009060;aerobic respiration;0.000145455673513063!GO:0045259;proton-transporting ATP synthase complex;0.00014591921011102!GO:0006650;glycerophospholipid metabolic process;0.000146091589155479!GO:0016787;hydrolase activity;0.000150660187370871!GO:0008234;cysteine-type peptidase activity;0.00017074120343286!GO:0009141;nucleoside triphosphate metabolic process;0.000177862425779616!GO:0003729;mRNA binding;0.000177959359634198!GO:0016779;nucleotidyltransferase activity;0.000178084904523478!GO:0048471;perinuclear region of cytoplasm;0.000195402861123872!GO:0051348;negative regulation of transferase activity;0.000210615219264136!GO:0030036;actin cytoskeleton organization and biogenesis;0.000213936941660981!GO:0006399;tRNA metabolic process;0.000218748935575502!GO:0006468;protein amino acid phosphorylation;0.000223307087367408!GO:0045333;cellular respiration;0.000236497699746996!GO:0051188;cofactor biosynthetic process;0.000242892483637961!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.000276209513432615!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;0.000324308966164472!GO:0004812;aminoacyl-tRNA ligase activity;0.000324308966164472!GO:0016875;ligase activity, forming carbon-oxygen bonds;0.000324308966164472!GO:0005839;proteasome core complex (sensu Eukaryota);0.000331794708703995!GO:0051168;nuclear export;0.000356244160586646!GO:0030518;steroid hormone receptor signaling pathway;0.000396631088352532!GO:0008186;RNA-dependent ATPase activity;0.000445785273808467!GO:0045893;positive regulation of transcription, DNA-dependent;0.000515299146567866!GO:0007050;cell cycle arrest;0.000548316223039994!GO:0050790;regulation of catalytic activity;0.000552695058044755!GO:0006612;protein targeting to membrane;0.000557942076707408!GO:0000278;mitotic cell cycle;0.000559686608517089!GO:0009056;catabolic process;0.000565597628361619!GO:0006891;intra-Golgi vesicle-mediated transport;0.000572213380732345!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;0.000589087099310747!GO:0015631;tubulin binding;0.000589873213686864!GO:0006643;membrane lipid metabolic process;0.000591271533288416!GO:0000122;negative regulation of transcription from RNA polymerase II promoter;0.000620760909447324!GO:0043038;amino acid activation;0.000621035055274056!GO:0006418;tRNA aminoacylation for protein translation;0.000621035055274056!GO:0043039;tRNA aminoacylation;0.000621035055274056!GO:0016251;general RNA polymerase II transcription factor activity;0.00062211579510211!GO:0005852;eukaryotic translation initiation factor 3 complex;0.000751016588511123!GO:0030658;transport vesicle membrane;0.000756317091645625!GO:0048518;positive regulation of biological process;0.000766132493956006!GO:0006401;RNA catabolic process;0.000772207881431264!GO:0015077;monovalent inorganic cation transmembrane transporter activity;0.000774948606501421!GO:0005667;transcription factor complex;0.000802386445014458!GO:0009055;electron carrier activity;0.000810146884149269!GO:0008287;protein serine/threonine phosphatase complex;0.000915937458234!GO:0030659;cytoplasmic vesicle membrane;0.000922543267646396!GO:0012506;vesicle membrane;0.000931600988866176!GO:0045941;positive regulation of transcription;0.000942340647665376!GO:0006752;group transfer coenzyme metabolic process;0.000955330826416389!GO:0045935;positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.000968985532224995!GO:0006352;transcription initiation;0.0010097630367098!GO:0004672;protein kinase activity;0.00101861192703554!GO:0005885;Arp2/3 protein complex;0.00102476753133314!GO:0001726;ruffle;0.00107896311927442!GO:0005774;vacuolar membrane;0.00115974464978611!GO:0004298;threonine endopeptidase activity;0.0011809856312373!GO:0009108;coenzyme biosynthetic process;0.00118104034562774!GO:0004004;ATP-dependent RNA helicase activity;0.00129752836875012!GO:0019783;small conjugating protein-specific protease activity;0.00130955799603005!GO:0031902;late endosome membrane;0.00135869804417168!GO:0004843;ubiquitin-specific protease activity;0.00156344282654276!GO:0006099;tricarboxylic acid cycle;0.00161981659535158!GO:0046356;acetyl-CoA catabolic process;0.00161981659535158!GO:0046467;membrane lipid biosynthetic process;0.00162483086958505!GO:0030522;intracellular receptor-mediated signaling pathway;0.00165105047478923!GO:0030521;androgen receptor signaling pathway;0.00166759334120425!GO:0060090;molecular adaptor activity;0.00170310162241384!GO:0031901;early endosome membrane;0.0017416606178776!GO:0004261;cathepsin G activity;0.00176756375851398!GO:0043021;ribonucleoprotein binding;0.00210310432426517!GO:0030660;Golgi-associated vesicle membrane;0.00222547254558763!GO:0030029;actin filament-based process;0.00225907168563661!GO:0008361;regulation of cell size;0.00235439066353579!GO:0004428;inositol or phosphatidylinositol kinase activity;0.00247489804415609!GO:0030133;transport vesicle;0.00249815289469753!GO:0006818;hydrogen transport;0.00250190489126404!GO:0016044;membrane organization and biogenesis;0.00251038778311257!GO:0045792;negative regulation of cell size;0.00261159794694848!GO:0016281;eukaryotic translation initiation factor 4F complex;0.00263711952760556!GO:0004221;ubiquitin thiolesterase activity;0.00263711952760556!GO:0046854;phosphoinositide phosphorylation;0.00263711952760556!GO:0046519;sphingoid metabolic process;0.00263711952760556!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.00267173250044392!GO:0015992;proton transport;0.00276584390992006!GO:0044433;cytoplasmic vesicle part;0.0027832235977068!GO:0030308;negative regulation of cell growth;0.00281244570079402!GO:0006084;acetyl-CoA metabolic process;0.0028987313872164!GO:0005741;mitochondrial outer membrane;0.00300555523788562!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.00318481286581843!GO:0008017;microtubule binding;0.00319104933534902!GO:0016049;cell growth;0.00324176479747078!GO:0017091;AU-rich element binding;0.00330167569986574!GO:0050779;RNA destabilization;0.00330167569986574!GO:0000289;poly(A) tail shortening;0.00330167569986574!GO:0008286;insulin receptor signaling pathway;0.00345214057131105!GO:0030134;ER to Golgi transport vesicle;0.00345235526404232!GO:0030127;COPII vesicle coat;0.00363409692889072!GO:0012507;ER to Golgi transport vesicle membrane;0.00363409692889072!GO:0001558;regulation of cell growth;0.00384149744529729!GO:0051252;regulation of RNA metabolic process;0.00384149744529729!GO:0044437;vacuolar part;0.00397330369636532!GO:0005099;Ras GTPase activator activity;0.00427436084173226!GO:0031072;heat shock protein binding;0.0043654720588061!GO:0030663;COPI coated vesicle membrane;0.00446754904538177!GO:0030126;COPI vesicle coat;0.00446754904538177!GO:0043407;negative regulation of MAP kinase activity;0.00449785718999951!GO:0006417;regulation of translation;0.00449793890466889!GO:0045926;negative regulation of growth;0.00456066996653959!GO:0006672;ceramide metabolic process;0.00462400529376201!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;0.00463644571126216!GO:0042802;identical protein binding;0.00468338714597844!GO:0043488;regulation of mRNA stability;0.00471353844538661!GO:0043487;regulation of RNA stability;0.00471353844538661!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.00475686791008189!GO:0015399;primary active transmembrane transporter activity;0.00475686791008189!GO:0005665;DNA-directed RNA polymerase II, core complex;0.00493131263436829!GO:0043065;positive regulation of apoptosis;0.00505059880461343!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00505059880461343!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00505059880461343!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00505059880461343!GO:0019867;outer membrane;0.00505059880461343!GO:0045045;secretory pathway;0.00506443415690684!GO:0046474;glycerophospholipid biosynthetic process;0.00510736898502456!GO:0007034;vacuolar transport;0.00519712766357955!GO:0006261;DNA-dependent DNA replication;0.00520412492279578!GO:0048500;signal recognition particle;0.00548906346449607!GO:0035258;steroid hormone receptor binding;0.00559488478907736!GO:0005048;signal sequence binding;0.0056883348246329!GO:0031968;organelle outer membrane;0.00569310007853494!GO:0046834;lipid phosphorylation;0.00569310007853494!GO:0043623;cellular protein complex assembly;0.00589255713285804!GO:0022890;inorganic cation transmembrane transporter activity;0.00606674366852109!GO:0030041;actin filament polymerization;0.00611654151662081!GO:0016859;cis-trans isomerase activity;0.00611830643374244!GO:0032940;secretion by cell;0.00612725544584493!GO:0030118;clathrin coat;0.0062165465450252!GO:0043068;positive regulation of programmed cell death;0.00623624167368546!GO:0006950;response to stress;0.0062684011454898!GO:0016790;thiolester hydrolase activity;0.00631181745174746!GO:0019210;kinase inhibitor activity;0.00643444783140637!GO:0016311;dephosphorylation;0.00673717366174818!GO:0004860;protein kinase inhibitor activity;0.00690151920611194!GO:0006338;chromatin remodeling;0.00702305407684773!GO:0016584;nucleosome positioning;0.00703844900411334!GO:0009109;coenzyme catabolic process;0.00735462769147731!GO:0004722;protein serine/threonine phosphatase activity;0.00742655063537717!GO:0030137;COPI-coated vesicle;0.0074322437269234!GO:0006917;induction of apoptosis;0.0074405901138581!GO:0046489;phosphoinositide biosynthetic process;0.00801505039544401!GO:0046983;protein dimerization activity;0.00825325637510759!GO:0005765;lysosomal membrane;0.00835550417582708!GO:0018193;peptidyl-amino acid modification;0.00871244164171393!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.00892372400691527!GO:0005070;SH3/SH2 adaptor activity;0.00919127855291789!GO:0003899;DNA-directed RNA polymerase activity;0.00930610788404021!GO:0006644;phospholipid metabolic process;0.00934503879462704!GO:0003682;chromatin binding;0.00942386893710375!GO:0003684;damaged DNA binding;0.0095644286905251!GO:0030867;rough endoplasmic reticulum membrane;0.00981224231325215!GO:0033116;ER-Golgi intermediate compartment membrane;0.00993110026624328!GO:0022406;membrane docking;0.00993110026624328!GO:0048278;vesicle docking;0.00993110026624328!GO:0031625;ubiquitin protein ligase binding;0.0100291621952977!GO:0006414;translational elongation;0.010036160009466!GO:0003746;translation elongation factor activity;0.0100834961309637!GO:0051338;regulation of transferase activity;0.010104658681068!GO:0019843;rRNA binding;0.0102772577507379!GO:0012502;induction of programmed cell death;0.0102903544964544!GO:0006904;vesicle docking during exocytosis;0.0106539261664549!GO:0035035;histone acetyltransferase binding;0.0108841174598833!GO:0005637;nuclear inner membrane;0.0109778125892605!GO:0043549;regulation of kinase activity;0.011032528790925!GO:0005874;microtubule;0.0110602409449227!GO:0033367;protein localization in mast cell secretory granule;0.0110602409449227!GO:0033365;protein localization in organelle;0.0110602409449227!GO:0033371;T cell secretory granule organization and biogenesis;0.0110602409449227!GO:0033373;maintenance of protease localization in mast cell secretory granule;0.0110602409449227!GO:0033375;protease localization in T cell secretory granule;0.0110602409449227!GO:0042629;mast cell granule;0.0110602409449227!GO:0033377;maintenance of protein localization in T cell secretory granule;0.0110602409449227!GO:0033364;mast cell secretory granule organization and biogenesis;0.0110602409449227!GO:0033380;granzyme B localization in T cell secretory granule;0.0110602409449227!GO:0033379;maintenance of protease localization in T cell secretory granule;0.0110602409449227!GO:0033370;maintenance of protein localization in mast cell secretory granule;0.0110602409449227!GO:0033368;protease localization in mast cell secretory granule;0.0110602409449227!GO:0033366;protein localization in secretory granule;0.0110602409449227!GO:0033382;maintenance of granzyme B localization in T cell secretory granule;0.0110602409449227!GO:0033374;protein localization in T cell secretory granule;0.0110602409449227!GO:0051187;cofactor catabolic process;0.0112463838483509!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.0113176638356021!GO:0045047;protein targeting to ER;0.0113176638356021!GO:0031326;regulation of cellular biosynthetic process;0.0113534020607356!GO:0051329;interphase of mitotic cell cycle;0.011461101003573!GO:0030119;AP-type membrane coat adaptor complex;0.0115217437378319!GO:0043087;regulation of GTPase activity;0.0115992951348699!GO:0000118;histone deacetylase complex;0.0118134983093094!GO:0048468;cell development;0.0120327488436537!GO:0009889;regulation of biosynthetic process;0.0120929539910485!GO:0051056;regulation of small GTPase mediated signal transduction;0.012210330315143!GO:0008333;endosome to lysosome transport;0.0127971795777894!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;0.0128031898909736!GO:0045859;regulation of protein kinase activity;0.0128825335718989!GO:0007004;telomere maintenance via telomerase;0.0132117822927453!GO:0051098;regulation of binding;0.0133841516784725!GO:0000307;cyclin-dependent protein kinase holoenzyme complex;0.0136075760205752!GO:0043161;proteasomal ubiquitin-dependent protein catabolic process;0.0136556204512338!GO:0043086;negative regulation of catalytic activity;0.0139001770061791!GO:0006509;membrane protein ectodomain proteolysis;0.0143665534125944!GO:0033619;membrane protein proteolysis;0.0143665534125944!GO:0051325;interphase;0.0143665534125944!GO:0006376;mRNA splice site selection;0.0144675718366812!GO:0000389;nuclear mRNA 3'-splice site recognition;0.0144675718366812!GO:0000184;mRNA catabolic process, nonsense-mediated decay;0.0150170248639335!GO:0003711;transcription elongation regulator activity;0.0151609901561154!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.0152483350244055!GO:0048487;beta-tubulin binding;0.0152833083132922!GO:0051301;cell division;0.015541455829044!GO:0001516;prostaglandin biosynthetic process;0.0155915515087945!GO:0046457;prostanoid biosynthetic process;0.0155915515087945!GO:0046966;thyroid hormone receptor binding;0.01560580340236!GO:0007040;lysosome organization and biogenesis;0.0159473781356755!GO:0005669;transcription factor TFIID complex;0.0160171974105437!GO:0040029;regulation of gene expression, epigenetic;0.0169462448038111!GO:0007266;Rho protein signal transduction;0.017044955715165!GO:0030374;ligand-dependent nuclear receptor transcription coactivator activity;0.0170493860127741!GO:0006839;mitochondrial transport;0.0171793023161389!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.0176421386089949!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.0176816507534236!GO:0022415;viral reproductive process;0.0177452758412463!GO:0006470;protein amino acid dephosphorylation;0.0179795105035472!GO:0009893;positive regulation of metabolic process;0.0180829257350832!GO:0006897;endocytosis;0.0182166747702375!GO:0010324;membrane invagination;0.0182166747702375!GO:0005057;receptor signaling protein activity;0.0182166747702375!GO:0022403;cell cycle phase;0.018459170839941!GO:0030258;lipid modification;0.018673796093148!GO:0005020;stem cell factor receptor activity;0.018981224452224!GO:0008250;oligosaccharyl transferase complex;0.0191446542990898!GO:0051059;NF-kappaB binding;0.0192177367617114!GO:0050811;GABA receptor binding;0.0192218031941892!GO:0040008;regulation of growth;0.0195794291580352!GO:0008092;cytoskeletal protein binding;0.0196643574632862!GO:0008312;7S RNA binding;0.0199007661783611!GO:0004576;oligosaccharyl transferase activity;0.0201694892605623!GO:0030131;clathrin adaptor complex;0.0204837217171379!GO:0009266;response to temperature stimulus;0.020802492703306!GO:0043492;ATPase activity, coupled to movement of substances;0.0208381291650383!GO:0045746;negative regulation of Notch signaling pathway;0.0210765876913495!GO:0006611;protein export from nucleus;0.0211786546038806!GO:0032200;telomere organization and biogenesis;0.0212618843648181!GO:0000723;telomere maintenance;0.0212618843648181!GO:0005942;phosphoinositide 3-kinase complex;0.0214195679384996!GO:0005095;GTPase inhibitor activity;0.0214419182192368!GO:0007041;lysosomal transport;0.0215186451796579!GO:0008632;apoptotic program;0.0219238431296312!GO:0051336;regulation of hydrolase activity;0.022219760589745!GO:0006383;transcription from RNA polymerase III promoter;0.0224166225356177!GO:0008637;apoptotic mitochondrial changes;0.0225784924769977!GO:0035004;phosphoinositide 3-kinase activity;0.0226097971258016!GO:0016303;1-phosphatidylinositol-3-kinase activity;0.0226097971258016!GO:0001727;lipid kinase activity;0.0228647462194427!GO:0006354;RNA elongation;0.0232073131849948!GO:0006405;RNA export from nucleus;0.0238330535421683!GO:0050681;androgen receptor binding;0.0239477780160009!GO:0030880;RNA polymerase complex;0.0240698199702899!GO:0030125;clathrin vesicle coat;0.0244275748870413!GO:0030665;clathrin coated vesicle membrane;0.0244275748870413!GO:0005657;replication fork;0.0244275748870413!GO:0046578;regulation of Ras protein signal transduction;0.0248527084866549!GO:0000209;protein polyubiquitination;0.0248625276397956!GO:0046822;regulation of nucleocytoplasmic transport;0.0253388504795895!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.0255059935436328!GO:0005762;mitochondrial large ribosomal subunit;0.0275867461846948!GO:0000315;organellar large ribosomal subunit;0.0275867461846948!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.0279669116875031!GO:0016780;phosphotransferase activity, for other substituted phosphate groups;0.0279669116875031!GO:0006661;phosphatidylinositol biosynthetic process;0.0283136868090309!GO:0046456;icosanoid biosynthetic process;0.0286266624599628!GO:0005791;rough endoplasmic reticulum;0.0288472697332845!GO:0005684;U2-dependent spliceosome;0.0291612521581841!GO:0008154;actin polymerization and/or depolymerization;0.0292400824612811!GO:0046488;phosphatidylinositol metabolic process;0.0297610946038883!GO:0006310;DNA recombination;0.0298929119789965!GO:0007030;Golgi organization and biogenesis;0.0299780019221183!GO:0018196;peptidyl-asparagine modification;0.0315360633677324!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.0315360633677324!GO:0000188;inactivation of MAPK activity;0.0316005859649555!GO:0051087;chaperone binding;0.0316005859649555!GO:0005869;dynactin complex;0.0316176739475319!GO:0006368;RNA elongation from RNA polymerase II promoter;0.0319881105752571!GO:0006302;double-strand break repair;0.0328605982160164!GO:0004527;exonuclease activity;0.0331286007877909!GO:0045576;mast cell activation;0.0332339938226559!GO:0006289;nucleotide-excision repair;0.0333351642489919!GO:0043414;biopolymer methylation;0.0333473633800023!GO:0008276;protein methyltransferase activity;0.0336533902240208!GO:0015980;energy derivation by oxidation of organic compounds;0.0338928208747051!GO:0046426;negative regulation of JAK-STAT cascade;0.0344823144752431!GO:0006367;transcription initiation from RNA polymerase II promoter;0.0347957467637847!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.0349964093314078!GO:0000428;DNA-directed RNA polymerase complex;0.0349964093314078!GO:0030176;integral to endoplasmic reticulum membrane;0.0352304433746984!GO:0045603;positive regulation of endothelial cell differentiation;0.035440772069445!GO:0008139;nuclear localization sequence binding;0.0361098589714096!GO:0006665;sphingolipid metabolic process;0.0365363840116469!GO:0032984;macromolecular complex disassembly;0.0370203181504358!GO:0015266;protein channel activity;0.0374526414371461!GO:0045454;cell redox homeostasis;0.0376834706250075!GO:0043022;ribosome binding;0.0379570963418219!GO:0051920;peroxiredoxin activity;0.0384652761968612!GO:0047485;protein N-terminus binding;0.0390655934316239!GO:0000059;protein import into nucleus, docking;0.0391747396657497!GO:0030149;sphingolipid catabolic process;0.0392604529787757!GO:0004721;phosphoprotein phosphatase activity;0.0393757264286347!GO:0030027;lamellipodium;0.0395779295564897!GO:0016601;Rac protein signal transduction;0.039917459216801!GO:0006013;mannose metabolic process;0.0404139267157269!GO:0007033;vacuole organization and biogenesis;0.0407717782140725!GO:0031647;regulation of protein stability;0.0409775604086382!GO:0015923;mannosidase activity;0.0415436694782161!GO:0030271;chymase activity;0.0417952280851771!GO:0016791;phosphoric monoester hydrolase activity;0.0421634690827078!GO:0045947;negative regulation of translational initiation;0.0421634690827078!GO:0000082;G1/S transition of mitotic cell cycle;0.0423152908258526!GO:0030503;regulation of cell redox homeostasis;0.0423644812003723!GO:0006892;post-Golgi vesicle-mediated transport;0.0423688889504341!GO:0009117;nucleotide metabolic process;0.0425940300630749!GO:0032507;maintenance of cellular protein localization;0.0432020614861922!GO:0019377;glycolipid catabolic process;0.0434257356318266!GO:0016279;protein-lysine N-methyltransferase activity;0.0435964420330192!GO:0018024;histone-lysine N-methyltransferase activity;0.0435964420330192!GO:0016278;lysine N-methyltransferase activity;0.0435964420330192!GO:0000288;mRNA catabolic process, deadenylation-dependent decay;0.0435964420330192!GO:0005484;SNAP receptor activity;0.0437054341571094!GO:0030218;erythrocyte differentiation;0.0448134210445597!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.0454767555945683!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.0454767555945683!GO:0042147;retrograde transport, endosome to Golgi;0.045625977396991!GO:0002763;positive regulation of myeloid leukocyte differentiation;0.04569530413448!GO:0043681;protein import into mitochondrion;0.0457674674994933!GO:0008629;induction of apoptosis by intracellular signals;0.0459395188211966!GO:0051219;phosphoprotein binding;0.0460644412378989!GO:0005801;cis-Golgi network;0.0463822855004891!GO:0006984;ER-nuclear signaling pathway;0.046397599979387!GO:0042771;DNA damage response, signal transduction by p53 class mediator resulting in induction of apoptosis;0.0463995674460026!GO:0008601;protein phosphatase type 2A regulator activity;0.0464174335563316!GO:0051235;maintenance of localization;0.0465615121393538!GO:0045944;positive regulation of transcription from RNA polymerase II promoter;0.0466524322796223!GO:0045637;regulation of myeloid cell differentiation;0.0470053744385367!GO:0000119;mediator complex;0.0472732548545932!GO:0005085;guanyl-nucleotide exchange factor activity;0.0475764594371445!GO:0000781;chromosome, telomeric region;0.0475973670458875!GO:0030140;trans-Golgi network transport vesicle;0.047756867595426!GO:0006626;protein targeting to mitochondrion;0.0482626050948832!GO:0005955;calcineurin complex;0.0482626050948832!GO:0048146;positive regulation of fibroblast proliferation;0.048415622094777!GO:0016585;chromatin remodeling complex;0.0496234121075887
|sample_id=11566
|sample_note=
|sample_sex=female
|sample_species=Human (Homo sapiens)
|sample_strain=
|sample_tissue=skin
|top_motifs=ATF4:3.10607667868;CREB1:2.67714808131;GATA6:2.49634917986;AR:2.15266924992;ATF5_CREB3:2.12133485218;FOX{I1,J2}:2.08435497079;NFKB1_REL_RELA:2.08170994721;RFX1:2.08140036543;PAX2:2.01025250652;FOX{D1,D2}:1.95777212704;STAT1,3:1.95008124302;FOXN1:1.79799622167;PPARG:1.7666408519;RFX2..5_RFXANK_RFXAP:1.722379697;EP300:1.69285299017;EGR1..3:1.60442418716;HIF1A:1.58114351031;DMAP1_NCOR{1,2}_SMARC:1.49178341069;HSF1,2:1.48291260797;TFAP2{A,C}:1.4795961718;SREBF1,2:1.47463231262;PATZ1:1.4032714707;ATF2:1.35988674305;JUN:1.33653201393;RUNX1..3:1.3240648485;CDX1,2,4:1.31353880274;SPIB:1.29397164893;MAFB:1.28082204488;ELF1,2,4:1.23174443196;BPTF:1.22615395311;SPI1:1.12799579306;SP1:1.11259024971;HBP1_HMGB_SSRP1_UBTF:1.10092692369;TGIF1:1.07962683043;TLX2:1.03375651575;FOX{F1,F2,J1}:1.02694063461;NHLH1,2:0.921826205603;RXRA_VDR{dimer}:0.920809801267;CRX:0.908411004423;ESR1:0.867607737211;IKZF2:0.851454952148;ETS1,2:0.851433693211;DBP:0.831365708982;XBP1:0.77392399701;FOS_FOS{B,L1}_JUN{B,D}:0.747670987994;MYB:0.733240068607;MAZ:0.702873255289;ZFP161:0.694096836413;NFIL3:0.69040146451;HOXA9_MEIS1:0.687744443322;FOSL2:0.680645744957;ESRRA:0.637408797779;ATF6:0.633597391035;NANOG{mouse}:0.623098891784;TFAP4:0.622687444335;MEF2{A,B,C,D}:0.61063713944;BREu{core}:0.554034233627;ZNF238:0.552019189751;BACH2:0.530268315001;EBF1:0.485820087485;NFE2:0.481609393031;ALX1:0.400217230747;NFE2L1:0.398850597344;NFATC1..3:0.369315479924;MYFfamily:0.350605794021;RXR{A,B,G}:0.323089609324;SMAD1..7,9:0.319167097469;SOX2:0.286050529673;TFCP2:0.28070707828;FOXP1:0.262806457186;NR6A1:0.242718401842;HOX{A6,A7,B6,B7}:0.24086644074;PAX6:0.236803842287;SPZ1:0.228773779817;POU2F1..3:0.216124098532;PBX1:0.215837484344;ZNF148:0.159840496583;STAT2,4,6:0.153822594953;TFAP2B:0.11605781876;SOX5:0.094472869924;PAX1,9:0.06013378576;SRF:0.0195992406439;NKX6-1,2:0.00548310600246;HIC1:-0.0171695645982;bHLH_family:-0.0204888299082;HMX1:-0.0238149300702;MTF1:-0.0269939284203;FOXO1,3,4:-0.0303633724296;TBP:-0.0358521327643;HES1:-0.0404598852882;NKX3-2:-0.0686550019054;VSX1,2:-0.0720533419964;MED-1{core}:-0.0762653124429;MTE{core}:-0.0813443046456;ZIC1..3:-0.0918527975181;MZF1:-0.100464992132;TBX4,5:-0.124677062386;GLI1..3:-0.137674819994;CUX2:-0.137969533603;ELK1,4_GABP{A,B1}:-0.1527984713;NFY{A,B,C}:-0.154998844271;NFE2L2:-0.18387471407;TOPORS:-0.190756193064;T:-0.205167811698;PAX5:-0.211921551228;TAL1_TCF{3,4,12}:-0.220406724418;REST:-0.220610122714;GTF2I:-0.263525228106;NRF1:-0.273049394081;IRF1,2:-0.27394618235;ZBTB6:-0.280949839526;FOXL1:-0.28919931951;XCPE1{core}:-0.298717798321;PITX1..3:-0.342650204579;PAX3,7:-0.34291846988;RORA:-0.349669351597;GZF1:-0.352063680863;HNF4A_NR2F1,2:-0.362780355752;STAT5{A,B}:-0.371767521124;EVI1:-0.37592388161;HLF:-0.376145559177;EN1,2:-0.389033650942;ZNF423:-0.391933955849;RREB1:-0.403975934078;FOXM1:-0.422965334099;ZNF143:-0.437259107581;POU6F1:-0.450502964594;AHR_ARNT_ARNT2:-0.451974451367;PAX4:-0.45217353312;TLX1..3_NFIC{dimer}:-0.471559517966;E2F1..5:-0.501051239087;SOX{8,9,10}:-0.513766075677;ARID5B:-0.544250709502;HOX{A5,B5}:-0.555363941153;PRRX1,2:-0.560471993246;CEBPA,B_DDIT3:-0.584565105536;HNF1A:-0.600131394549;TFDP1:-0.603825881433;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.608035316757;ZNF384:-0.610238847521;ZBTB16:-0.619849902316;IKZF1:-0.643037108349;NKX2-1,4:-0.671360320548;LHX3,4:-0.680503483351;FOXP3:-0.68753591185;TEAD1:-0.728389133204;YY1:-0.735296186729;HAND1,2:-0.740946840141;POU1F1:-0.757157495953;FOXQ1:-0.763826789204;ZEB1:-0.775066191531;NKX2-3_NKX2-5:-0.826626596601;NKX3-1:-0.839875346825;LEF1_TCF7_TCF7L1,2:-0.85891424372;GATA4:-0.866857678229;AIRE:-0.870439695551;TP53:-0.882708892451;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.890182584423;SNAI1..3:-0.928500159424;FOXD3:-0.932857806919;NR3C1:-0.938061610148;GTF2A1,2:-0.958178655054;PRDM1:-0.968989674501;SOX17:-0.973569899879;PAX8:-1.03564109098;NFIX:-1.04874980798;RBPJ:-1.05054057496;NANOG:-1.07459656017;NKX2-2,8:-1.12827146451;NR5A1,2:-1.14830243033;IRF7:-1.22753522628;ONECUT1,2:-1.2295729705;OCT4_SOX2{dimer}:-1.24102896954;UFEwm:-1.30191167038;POU5F1:-1.36091088293;MYOD1:-1.36240045845;GFI1:-1.40542352586;HOX{A4,D4}:-1.40979240335;HMGA1,2:-1.45937142733;MYBL2:-1.53164808574;FOXA2:-1.57135044217;NR1H4:-1.73071079654;GFI1B:-1.874153023;ALX4:-2.1031140199;TEF:-2.10506517716;ADNP_IRX_SIX_ZHX:-2.12241040844;KLF4:-2.1900278024;CDC5L:-2.23136010439;LMO2:-2.26167030539;GCM1,2:-2.33037416272;POU3F1..4:-2.59679556694;PDX1:-2.65255606628
|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11566-120D9;search_select_hide=table117:FF:11566-120D9
}}
}}

Latest revision as of 18:09, 4 June 2020

Name:Mast cell, donor3
Species:Human (Homo sapiens)
Library ID:CNhs12593
Sample type:primary cells
Genomic View: UCSC
RefEX:Specific genes
FANTOM CAT:1, 2, 3, 4, 5, 6, 7, 8, 9, 10
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissueskin
dev stage41 years old adult
sexfemale
age76
cell typemast cell
cell lineNA
companyNA
collaborationSven Guhl (Charite Germany)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot numberBsMC-T
catalog numberNA
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-TRIzol-ethanol-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00005069
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs12593 CAGE DRX008333 DRR009205
Accession ID Hg19

Library idBAMCTSS
CNhs12593 DRZ000630 DRZ002015
Accession ID Hg38

Library idBAMCTSS
CNhs12593 DRZ011980 DRZ013365
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload

RNA-Seq Accession numbers
MethodSample accession id
sRNA-Seq  SAMD00005069
Library accession numbers

Library idMethodExp. accession idRun accession id
SRhi10014.AGTTCC sRNA-Seq DRX037237 DRR041603
Accession ID Hg19

Library idBAMCTSS
SRhi10014.AGTTCC DRZ007245


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0.899
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis-0.0119
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0.0585
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma-0.276
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190.0585
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0.676
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0.198
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40.0126
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0.0271
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0.128
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0.413
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40.11
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0.635
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0.0585
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural0.41
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD190.463
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle-0.151
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40.0585
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed0.0658
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0.333
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190.11
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte0.239
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0.0585
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus-0.243
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory0.661
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0.48
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD41.177
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0.112
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD80.581
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40.792
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth0.287
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0.00905
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40.972
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small-0.56
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0.541
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340.0585
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0.318
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0.198
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0.333
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0.303
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0.303
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340.0585
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs12593

Jaspar motifP-value
MA0002.20.0329
MA0003.10.525
MA0004.10.83
MA0006.10.92
MA0007.10.18
MA0009.10.117
MA0014.10.855
MA0017.10.0376
MA0018.22.05499e-10
MA0019.10.282
MA0024.10.629
MA0025.17.46114e-4
MA0027.10.939
MA0028.10.109
MA0029.10.0124
MA0030.18.5122e-5
MA0031.10.0328
MA0035.21.87395e-7
MA0038.10.00942
MA0039.20.112
MA0040.10.57
MA0041.10.463
MA0042.10.169
MA0043.11.96753e-7
MA0046.10.793
MA0047.20.267
MA0048.10.554
MA0050.10.573
MA0051.10.779
MA0052.10.00813
MA0055.10.46
MA0057.10.191
MA0058.10.98
MA0059.10.0228
MA0060.10.612
MA0061.11.54939e-11
MA0062.26.92424e-7
MA0065.20.0502
MA0066.10.197
MA0067.15.94452e-8
MA0068.14.79623e-4
MA0069.10.886
MA0070.10.424
MA0071.10.417
MA0072.10.495
MA0073.10.377
MA0074.10.682
MA0076.10.0835
MA0077.10.312
MA0078.10.705
MA0079.20.00663
MA0080.23.08809e-12
MA0081.13.82155e-4
MA0083.10.658
MA0084.10.518
MA0087.10.76
MA0088.10.0146
MA0090.10.00248
MA0091.10.424
MA0092.10.377
MA0093.10.823
MA0099.21.65572e-5
MA0100.10.36
MA0101.18.97473e-13
MA0102.20.247
MA0103.10.0019
MA0104.20.0598
MA0105.11.9162e-4
MA0106.10.0111
MA0107.13.17301e-13
MA0108.20.0524
MA0111.10.378
MA0112.20.153
MA0113.10.0815
MA0114.10.0279
MA0115.10.832
MA0116.10.0397
MA0117.10.0219
MA0119.10.0238
MA0122.10.421
MA0124.10.687
MA0125.10.189
MA0131.10.0626
MA0135.10.284
MA0136.12.63305e-12
MA0137.20.0871
MA0138.20.744
MA0139.10.677
MA0140.15.81731e-5
MA0141.10.0549
MA0142.10.127
MA0143.10.731
MA0144.10.243
MA0145.10.768
MA0146.10.184
MA0147.10.00612
MA0148.10.418
MA0149.10.453
MA0150.10.0981
MA0152.10.106
MA0153.10.244
MA0154.10.913
MA0155.10.98
MA0156.14.17578e-6
MA0157.10.672
MA0159.10.256
MA0160.10.425
MA0162.10.0261
MA0163.10.393
MA0164.10.689
MA0258.10.631
MA0259.10.335



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs12593

Novel motifP-value
10.0849
100.344
1000.241
1010.753
1020.835
1030.319
1040.923
1050.618
1060.797
1070.0173
1080.108
1090.855
110.299
1100.146
1110.144
1120.92
1130.65
1140.0869
1150.811
1160.17
1170.0829
1180.3
1190.0981
120.602
1200.254
1210.284
1220.506
1230.514
1240.0565
1250.273
1260.637
1270.601
1280.749
1290.0022
130.739
1300.447
1310.696
1320.151
1330.0599
1340.426
1350.683
1360.0422
1370.0396
1380.287
1390.67
140.805
1400.182
1410.175
1420.0351
1430.729
1440.874
1450.593
1460.325
1470.137
1480.695
1490.0896
150.474
1500.939
1510.393
1520.101
1530.665
1540.709
1550.204
1560.705
1570.512
1580.507
1590.289
160.199
1600.0508
1610.349
1620.147
1630.358
1640.412
1650.918
1660.0362
1670.328
1680.179
1690.352
170.411
180.144
190.306
20.106
200.43
210.559
220.931
230.842
240.647
250.855
260.303
270.248
280.626
290.427
30.317
300.477
310.34
320.00338
330.801
340.646
350.144
360.705
370.804
380.638
390.574
40.412
400.41
410.985
420.294
430.454
440.046
450.579
460.249
470.209
480.164
490.422
50.728
500.926
510.859
520.883
530.953
540.809
550.584
560.483
570.0871
580.79
590.666
60.78
600.818
610.56
620.749
630.246
640.356
650.339
660.766
670.229
680.521
690.164
70.769
700.383
710.389
720.416
730.402
740.00818
750.98
760.758
770.0512
780.449
790.294
80.0701
800.45
810.308
820.924
830.773
840.342
850.632
860.0642
870.332
880.446
890.0109
90.728
900.614
910.878
920.346
930.252
940.695
950.0629
960.301
970.717
980.414
991.14993e-4



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs12593


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000988 (hematopoietic cell)
0000548 (animal cell)
0000763 (myeloid cell)
0000151 (secretory cell)
0002371 (somatic cell)
0000766 (myeloid leukocyte)
0002274 (histamine secreting cell)
0000219 (motile cell)
0000163 (endocrine cell)
0000457 (biogenic amine secreting cell)
0000738 (leukocyte)
0000255 (eukaryotic cell)
0000097 (mast cell)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000260 (mast cell sample)
0000261 (mast cell- heparinase treated sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000049 (common myeloid progenitor)
CL:0000134 (mesenchymal cell)

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