FF:11616-122A5: Difference between revisions
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{{f5samples | {{f5samples | ||
|DRA_sample_Accession=CAGE@ | |DRA_sample_Accession=CAGE@SAMD00005989 | ||
|accession_numbers=CAGE;DRX008352;DRR009224;DRZ000649;DRZ002034 | |accession_numbers=CAGE;DRX008352;DRR009224;DRZ000649;DRZ002034;DRZ011999;DRZ013384 | ||
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0002371,UBERON:0001474,UBERON:0002384,UBERON:0000479,UBERON:0000062,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0004765,UBERON:0010317,UBERON:0002204,UBERON:0001434,UBERON:0002390,UBERON:0002193,UBERON:0002405 | |ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0002371,UBERON:0001474,UBERON:0002384,UBERON:0000479,UBERON:0000062,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0004765,UBERON:0010317,UBERON:0002204,UBERON:0001434,UBERON:0002390,UBERON:0002193,UBERON:0002405 | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000723,CL:0000048,CL:0000548,CL:0002320,CL:0002371,CL:0000219,CL:0000134,CL:0000255,CL:0000034,CL:0002092,CL:0002540 | |ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000723,CL:0000048,CL:0000548,CL:0002320,CL:0002371,CL:0000219,CL:0000134,CL:0000255,CL:0000034,CL:0002092,CL:0002540 | ||
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|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|datafreeze_phase= | |data_phase=2 | ||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score=chr7:19157248..19157268,-!p1@TWIST1!1.90!209.94!TWIST1;;chr12:66218255..66218304,+!p3@HMGA2!1.80!161.71!HMGA2;;chr6:34204921..34204939,+!p3@HMGA1!1.71!1421.33!HMGA1;;chr14:61116183..61116208,-!p1@SIX1!1.62!148.94!SIX1;;chr12:66218598..66218645,+!p2@HMGA2!1.56!156.03!HMGA2;;chr5:2751762..2751784,-!p1@IRX2!1.54!34.04!IRX2;;chr16:86600426..86600441,+!p1@FOXC2!1.51!75.18!FOXC2;;chr2:5832508..5832524,+!p1@SOX11!1.45!26.95!SOX11;;chr12:54410664..54410684,+!p1@HOXC4,p1@HOXC5,p1@HOXC6!1.45!26.95!HOXC5;;chr17:46675420..46675465,-!p3@HOXB6!1.37!25.53!HOXB6;;chr11:65686802..65686818,+!p6@DRAP1!1.33!35.46!DRAP1;;chr12:66218212..66218244,+!p5@HMGA2!1.27!25.53!HMGA2;;chr17:46675558..46675577,-!p2@HOXB6!1.26!17.02!HOXB6;;chr9:132427883..132427951,+!p2@PRRX2!1.26!17.02!PRRX2;;chr12:66218836..66218888,+!p1@HMGA2!1.25!153.20!HMGA2;;chr12:66218904..66218913,+!p11@HMGA2!1.22!15.60!HMGA2;;chr17:46682321..46682362,-!p1@HOXB6!1.22!15.60!HOXB6;;chr11:65687222..65687240,+!p7@DRAP1!1.19!18.44!DRAP1;;chr12:54394309..54394336,+!p2@HOXC9!1.18!14.18!HOXC9;;chr12:54402745..54402788,+!p1@HOXC8!1.14!12.77!HOXC8;;chr12:66218469..66218477,+!p16@HMGA2!1.14!12.77!HMGA2;;chr17:59477403..59477414,+!p4@TBX2!1.14!12.77!TBX2;;chr11:46299539..46299620,+!p2@CREB3L1!1.13!21.28!CREB3L1;;chr11:65686732..65686756,+!p2@DRAP1!1.12!51.07!DRAP1;;chr9:132427972..132428056,+!p1@PRRX2!1.11!15.60!PRRX2;;chr5:2751785..2751808,-!p2@IRX2!1.09!11.35!IRX2;;chr6:134210243..134210257,+!p1@TCF21!1.09!11.35!TCF21;;chr12:66218183..66218209,+!p4@HMGA2!1.08!21.28!HMGA2;;chr2:200322654..200322707,-!p2@SATB2!1.07!15.60!SATB2;;chr11:46299199..46299233,+!p1@CREB3L1!1.06!55.32!CREB3L1;;chr7:19157043..19157088,-!p2@TWIST1!1.04!25.53!TWIST1;;chr5:3595977..3595999,+!p1@IRX1!1.04!9.93!IRX1;;chr12:54422217..54422239,+!p3@HOXC6!1.04!9.93!HOXC6;;chr12:54447637..54447659,+!p4@HOXC4!1.04!9.93!HOXC4;;chr2:85981107..85981120,+!p3@ATOH8!1.04!9.93!ATOH8;;chr16:86600458..86600461,+!p3@FOXC2!1.04!9.93!FOXC2;;chr17:46690839..46690884,-!p1@HOXB8!1.04!9.93!HOXB8;;chr5:176738887..176738934,-!p1@MXD3!1.03!65.25!MXD3;;chr6:34204672..34204692,+!p1@HMGA1!1.02!1083.73!HMGA1;;chr12:66218573..66218596,+!p7@HMGA2!1.02!14.18!HMGA2;;chr2:19558373..19558392,-!p1@OSR1!1.01!25.53!OSR1;;chr17:46687959..46688007,-!p2@HOXB7!1.01!12.77!HOXB7;;chr1:170633262..170633285,+!p3@PRRX1!0.98!9.93!PRRX1;;chr2:176994408..176994492,+!p1@HOXD8!0.98!8.51!HOXD8;;chr12:54410639..54410659,+!p2@HOXC4,p2@HOXC5,p2@HOXC6!0.98!8.51!HOXC5;;chr1:170633348..170633399,+!p2@PRRX1!0.97!11.35!PRRX1;;chr12:66218378..66218401,+!p6@HMGA2!0.96!12.77!HMGA2;;chr12:2986206..2986258,-!p2@FOXM1!0.95!49.65!FOXM1;;chr17:59477233..59477263,+!p1@TBX2!0.95!25.53!TBX2;;chr19:38720294..38720348,-!p1@DPF1!0.95!9.93!DPF1;;chr12:66218443..66218461,+!p8@HMGA2!0.94!9.93!HMGA2;;chr20:30193083..30193098,+!p1@ID1!0.92!612.79!ID1;;chr16:54320646..54320672,-!p2@IRX3!0.92!11.35!IRX3;;chr6:45296048..45296082,+!p1@RUNX2!0.92!8.51!RUNX2;;chr5:72744594..72744609,-!p1@FOXD1!0.91!34.04!FOXD1;;chr8:145669791..145669834,-!p1@TONSL!0.91!21.28!TONSL;;chr11:65687243..65687276,+!p8@DRAP1!0.91!9.93!DRAP1;;chr12:115122318..115122331,-!p2@TBX3!0.91!7.09!TBX3;;chr12:54410948..54410992,+!p3@HOXC5!0.91!7.09!HOXC5;;chr12:66218420..66218439,+!p12@HMGA2!0.91!7.09!HMGA2;;chr12:66218923..66218934,+!p14@HMGA2!0.91!7.09!HMGA2;;chr16:54320127..54320148,-!p6@IRX3!0.91!7.09!IRX3;;chr17:46675586..46675600,-!p6@HOXB6!0.91!7.09!HOXB6;;chr17:46691732..46691766,-!p4@HOXB8!0.91!7.09!HOXB8;;chr19:47523058..47523114,+!p1@NPAS1!0.91!7.09!NPAS1;;chr1:2461692..2461710,-!p1@HES5!0.91!7.09!HES5;;chr5:3595961..3595975,+!p3@IRX1!0.91!7.09!IRX1;;chr12:54447599..54447630,+!p3@HOXC4!0.90!8.51!HOXC4;;chr2:85980951..85981004,+!p1@ATOH8!0.89!11.35!ATOH8;;chr16:54320617..54320643,-!p3@IRX3!0.88!8.51!IRX3;;chr17:41622765..41622821,-!p2@ETV4!0.87!9.93!ETV4;;chr1:8926441..8926473,-!p10@ENO1!0.87!9.93!ENO1;;chr8:49833948..49833973,-!p2@SNAI2!0.86!42.55!SNAI2;;chr1:170632285..170632309,+!p1@PRRX1!0.86!7.09!PRRX1;;chr14:61116168..61116180,-!p2@SIX1!0.85!7.09!SIX1;;chr16:54320101..54320125,-!p4@IRX3!0.83!8.51!IRX3;;chr20:48599506..48599526,+!p1@SNAI1!0.82!38.30!SNAI1;;chr11:65687158..65687216,+!p4@DRAP1!0.82!34.04!DRAP1;;chr2:239756739..239756755,+!p2@TWIST2!0.82!9.93!TWIST2;;chr22:19748231..19748317,+!p1@TBX1!0.82!5.67!TBX1;;chr4:299227..299272,-!p1@ZNF732!0.82!5.67!ZNF732;;chr11:46316699..46316719,+!p10@CREB3L1!0.82!5.67!CREB3L1;;chr5:3595934..3595957,+!p2@IRX1!0.82!5.67!IRX1;;chr7:27183291..27183324,-!p1@HOXA5!0.82!5.67!HOXA5;;chr17:8027418..8027432,-!p1@HES7!0.82!5.67!HES7;;chr1:23885981..23886002,-!p1@ID3!0.80!1004.29!ID3;;chr11:65667846..65667868,-!p1@FOSL1!0.79!150.36!FOSL1;;chr11:65687362..65687436,+!p3@DRAP1!0.79!25.53!DRAP1;;chr20:42295745..42295765,+!p1@MYBL2!0.77!87.95!MYBL2;;chr6:34204973..34204990,+!p4@HMGA1!0.77!72.34!HMGA1;;chr15:83953397..83953425,-!p1@BNC1!0.77!5.67!BNC1;;chr11:65667884..65667895,-!p2@FOSL1!0.76!19.86!FOSL1;;chr16:54320158..54320200,-!p5@IRX3!0.76!7.09!IRX3;;chr16:54964740..54964789,+!p1@IRX5!0.76!7.09!IRX5;;chr20:32274179..32274213,-!p1@E2F1!0.75!34.04!E2F1;;chr3:12329397..12329433,+!p2@PPARG!0.75!11.35!PPARG;;chr17:59477197..59477212,+!p2@TBX2!0.75!8.51!TBX2;;chr19:13134772..13134822,+!p2@NFIX!0.75!7.09!NFIX;;chr11:65686776..65686787,+!p9@DRAP1!0.75!5.67!DRAP1;;chr5:321810..321877,+!p1@AHRR!0.74!15.60!AHRR;;chr2:214015111..214015179,-!p1@IKZF2!0.74!8.51!IKZF2;;chr6:31126291..31126399,+!p1@TCF19!0.73!46.81!TCF19;;chr12:115121962..115121987,-!p1@TBX3!0.73!41.14!TBX3;;chr5:92918919..92918942,+!p1@NR2F1!0.72!21.28!NR2F1;;chr3:12329358..12329393,+!p3@PPARG!0.72!11.35!PPARG;;chr2:5832493..5832507,+!p2@SOX11!0.72!4.26!SOX11;;chr2:85981073..85981091,+!p5@ATOH8!0.72!4.26!ATOH8;;chr2:96012397..96012417,+!p3@KCNIP3!0.72!4.26!KCNIP3;;chr15:67418177..67418204,+!p9@SMAD3!0.72!4.26!SMAD3;;chr16:54320280..54320291,-!p9@IRX3!0.72!4.26!IRX3;;chr16:86601088..86601105,+!p5@FOXC2!0.72!4.26!FOXC2;;chr17:41622731..41622764,-!p5@ETV4!0.72!4.26!ETV4;;chr17:41623716..41623727,-!p12@ETV4!0.72!4.26!ETV4;;chr17:46621146..46621180,-!p10@HOXB2!0.72!4.26!HOXB2;;chr17:46675469..46675481,-!p4@HOXB6!0.72!4.26!HOXB6;;chr17:46692603..46692621,-!p6@HOXB8!0.72!4.26!HOXB8;;chr19:46801639..46801699,+!p1@HIF3A!0.72!4.26!HIF3A;;chr7:27196217..27196246,-!p2@HOXA7!0.72!4.26!HOXA7;;chr7:96654026..96654061,-!p2@DLX5!0.72!4.26!DLX5;;chr8:60031934..60031986,-!p6@TOX!0.72!4.26!TOX;;chr11:65668011..65668020,-!p3@FOSL1!0.72!4.26!FOSL1;;chr11:65688877..65688891,+!p13@DRAP1!0.72!4.26!DRAP1;;chr12:115122303..115122314,-!p6@TBX3!0.72!4.26!TBX3;;chr12:54393880..54393962,+!p1@HOXC9!0.72!4.26!HOXC9;;chr12:54394059..54394088,+!p3@HOXC9!0.72!4.26!HOXC9;;chr12:54394416..54394467,+!p5@HOXC9!0.72!4.26!HOXC9;;chr12:54402694..54402705,+!p5@HOXC8!0.72!4.26!HOXC8;;chr12:54402729..54402743,+!p3@HOXC8!0.72!4.26!HOXC8;;chr12:54402790..54402805,+!p2@HOXC8!0.72!4.26!HOXC8;;chr12:54447868..54447892,+!p6@HOXC6,p7@HOXC4!0.72!4.26!HOXC6;;chr12:66218413..66218418,+!p17@HMGA2!0.72!4.26!HMGA2;;chr19:1592714..1592762,-!p1@MBD3!0.71!35.46!MBD3;;chr12:3068544..3068597,+!p1@TEAD4!0.70!26.95!TEAD4;;chr20:42295713..42295738,+!p2@MYBL2!0.70!26.95!MYBL2;;chr1:54204818..54204870,-!p@chr1:54204818..54204870,-!0.69!4.26!GLIS1;;chr12:66218152..66218174,+!p10@HMGA2!0.69!4.26!HMGA2;;chr12:7079780..7079791,-!p2@PHB2!0.68!22.70!PHB2;;chr7:137686763..137686784,-!p5@CREB3L2!0.68!7.09!CREB3L2;;chr11:46299186..46299195,+!p3@CREB3L1!0.68!4.26!CREB3L1;;chr7:150945754..150945789,-!p2@SMARCD3!0.67!12.77!SMARCD3;;chr11:65686952..65686975,+!p5@DRAP1!0.66!22.70!DRAP1;;chr3:52001426..52001447,-!p3@PCBP4!0.66!11.35!PCBP4;;chr1:247171347..247171366,-!p2@ZNF695!0.66!7.09!ZNF695;;chr20:32274150..32274166,-!p2@E2F1!0.65!7.09!E2F1;;chr5:92919068..92919082,+!p5@NR2F1!0.65!4.26!NR2F1;;chr8:49833978..49833996,-!p1@SNAI2!0.64!82.27!SNAI2;;chr5:138609782..138609826,+!p5@MATR3!0.64!25.53!MATR3;;chr19:24097675..24097699,+!p1@ZNF726!0.64!12.77!ZNF726;;chr1:151032833..151032850,+!p3@MLLT11!0.64!8.51!MLLT11;;chr20:50721803..50721857,-!p2@ZFP64!0.64!5.67!ZFP64;;chr12:66218003..66218018,+!p9@HMGA2!0.64!4.26!HMGA2;;chr13:114238987..114238994,+!p2@TFDP1!0.64!4.26!TFDP1;;chr3:52001448..52001478,-!p2@PCBP4!0.63!53.90!PCBP4;;chr19:58962974..58963001,+!p1@ZNF324B!0.63!17.02!ZNF324B;;chr8:60031682..60031710,-!p2@TOX!0.63!5.67!TOX;;chr5:72744562..72744573,-!p3@FOXD1!0.63!4.26!FOXD1;;chr15:96874012..96874042,+!p2@NR2F2!0.62!34.04!NR2F2;;chr8:77593474..77593612,+!p1@ZFHX4!0.62!15.60!ZFHX4;;chr1:8483878..8483907,-!p4@RERE!0.62!14.18!RERE;;chr2:85981222..85981259,+!p2@ATOH8!0.62!5.67!ATOH8;;chr3:141087393..141087426,+!p3@ZBTB38!0.61!14.18!ZBTB38;;chr1:8483756..8483809,-!p5@RERE!0.61!9.93!RERE;;chr19:45260775..45260838,+!p5@BCL3!0.61!4.26!BCL3;;chr11:61520075..61520136,+!p1@C11orf9!0.60!7.09!C11orf9;;chr13:74708269..74708291,-!p7@KLF12!0.60!4.26!KLF12;;chr1:8938709..8938720,-!p3@ENO1!0.59!171.64!ENO1;;chr20:39946361..39946379,-!p2@ZHX3!0.59!9.93!ZHX3;;chr16:54320675..54320715,-!p1@IRX3!0.59!7.09!IRX3;;chr19:49864746..49864780,-!p2@TEAD2!0.59!4.26!TEAD2;;chr17:41623692..41623715,-!p1@ETV4!0.58!14.18!ETV4;;chr3:126076264..126076305,-!p2@KLF15!0.58!4.26!KLF15;;chr2:200320768..200320800,-!p4@SATB2!0.58!2.84!SATB2;;chr2:85981008..85981025,+!p7@ATOH8!0.58!2.84!ATOH8;;chr4:109089215..109089236,-!p25@LEF1!0.58!2.84!LEF1;;chr4:57522674..57522699,-!p5@HOPX!0.58!2.84!HOPX;;chr15:80843484..80843499,+!p5@ARNT2!0.58!2.84!ARNT2;;chr15:83953373..83953386,-!p2@BNC1!0.58!2.84!BNC1;;chr15:90294087..90294115,-!p1@MESP1!0.58!2.84!MESP1;;chr16:54320322..54320343,-!p7@IRX3!0.58!2.84!IRX3;;chr16:86600870..86600921,+!p2@FOXC2!0.58!2.84!FOXC2;;chr17:46655672..46655697,-!p3@HOXB4!0.58!2.84!HOXB4;;chr17:46671504..46671541,-!p2@HOXB5!0.58!2.84!HOXB5;;chr17:46675539..46675551,-!p7@HOXB6!0.58!2.84!HOXB6;;chr17:46692318..46692362,-!p5@HOXB8!0.58!2.84!HOXB8;;chr17:46703212..46703238,-!p2@HOXB9!0.58!2.84!HOXB9;;chr19:11750543..11750565,+!p2@ZNF833P!0.58!2.84!ZNF833P;;chr5:76382989..76383001,-!p4@ZBED3!0.58!2.84!ZBED3;;chr5:9291878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| |expression_enrichment_score=chr7:19157248..19157268,-!p1@TWIST1!1.90!209.94!TWIST1;;chr12:66218255..66218304,+!p3@HMGA2!1.80!161.71!HMGA2;;chr6:34204921..34204939,+!p3@HMGA1!1.71!1421.33!HMGA1;;chr14:61116183..61116208,-!p1@SIX1!1.62!148.94!SIX1;;chr12:66218598..66218645,+!p2@HMGA2!1.56!156.03!HMGA2;;chr5:2751762..2751784,-!p1@IRX2!1.54!34.04!IRX2;;chr16:86600426..86600441,+!p1@FOXC2!1.51!75.18!FOXC2;;chr2:5832508..5832524,+!p1@SOX11!1.45!26.95!SOX11;;chr12:54410664..54410684,+!p1@HOXC4,p1@HOXC5,p1@HOXC6!1.45!26.95!HOXC5;;chr17:46675420..46675465,-!p3@HOXB6!1.37!25.53!HOXB6;;chr11:65686802..65686818,+!p6@DRAP1!1.33!35.46!DRAP1;;chr12:66218212..66218244,+!p5@HMGA2!1.27!25.53!HMGA2;;chr17:46675558..46675577,-!p2@HOXB6!1.26!17.02!HOXB6;;chr9:132427883..132427951,+!p2@PRRX2!1.26!17.02!PRRX2;;chr12:66218836..66218888,+!p1@HMGA2!1.25!153.20!HMGA2;;chr12:66218904..66218913,+!p11@HMGA2!1.22!15.60!HMGA2;;chr17:46682321..46682362,-!p1@HOXB6!1.22!15.60!HOXB6;;chr11:65687222..65687240,+!p7@DRAP1!1.19!18.44!DRAP1;;chr12:54394309..54394336,+!p2@HOXC9!1.18!14.18!HOXC9;;chr12:54402745..54402788,+!p1@HOXC8!1.14!12.77!HOXC8;;chr12:66218469..66218477,+!p16@HMGA2!1.14!12.77!HMGA2;;chr17:59477403..59477414,+!p4@TBX2!1.14!12.77!TBX2;;chr11:46299539..46299620,+!p2@CREB3L1!1.13!21.28!CREB3L1;;chr11:65686732..65686756,+!p2@DRAP1!1.12!51.07!DRAP1;;chr9:132427972..132428056,+!p1@PRRX2!1.11!15.60!PRRX2;;chr5:2751785..2751808,-!p2@IRX2!1.09!11.35!IRX2;;chr6:134210243..134210257,+!p1@TCF21!1.09!11.35!TCF21;;chr12:66218183..66218209,+!p4@HMGA2!1.08!21.28!HMGA2;;chr2:200322654..200322707,-!p2@SATB2!1.07!15.60!SATB2;;chr11:46299199..46299233,+!p1@CREB3L1!1.06!55.32!CREB3L1;;chr7:19157043..19157088,-!p2@TWIST1!1.04!25.53!TWIST1;;chr5:3595977..3595999,+!p1@IRX1!1.04!9.93!IRX1;;chr12:54422217..54422239,+!p3@HOXC6!1.04!9.93!HOXC6;;chr12:54447637..54447659,+!p4@HOXC4!1.04!9.93!HOXC4;;chr2:85981107..85981120,+!p3@ATOH8!1.04!9.93!ATOH8;;chr16:86600458..86600461,+!p3@FOXC2!1.04!9.93!FOXC2;;chr17:46690839..46690884,-!p1@HOXB8!1.04!9.93!HOXB8;;chr5:176738887..176738934,-!p1@MXD3!1.03!65.25!MXD3;;chr6:34204672..34204692,+!p1@HMGA1!1.02!1083.73!HMGA1;;chr12:66218573..66218596,+!p7@HMGA2!1.02!14.18!HMGA2;;chr2:19558373..19558392,-!p1@OSR1!1.01!25.53!OSR1;;chr17:46687959..46688007,-!p2@HOXB7!1.01!12.77!HOXB7;;chr1:170633262..170633285,+!p3@PRRX1!0.98!9.93!PRRX1;;chr2:176994408..176994492,+!p1@HOXD8!0.98!8.51!HOXD8;;chr12:54410639..54410659,+!p2@HOXC4,p2@HOXC5,p2@HOXC6!0.98!8.51!HOXC5;;chr1:170633348..170633399,+!p2@PRRX1!0.97!11.35!PRRX1;;chr12:66218378..66218401,+!p6@HMGA2!0.96!12.77!HMGA2;;chr12:2986206..2986258,-!p2@FOXM1!0.95!49.65!FOXM1;;chr17:59477233..59477263,+!p1@TBX2!0.95!25.53!TBX2;;chr19:38720294..38720348,-!p1@DPF1!0.95!9.93!DPF1;;chr12:66218443..66218461,+!p8@HMGA2!0.94!9.93!HMGA2;;chr20:30193083..30193098,+!p1@ID1!0.92!612.79!ID1;;chr16:54320646..54320672,-!p2@IRX3!0.92!11.35!IRX3;;chr6:45296048..45296082,+!p1@RUNX2!0.92!8.51!RUNX2;;chr5:72744594..72744609,-!p1@FOXD1!0.91!34.04!FOXD1;;chr8:145669791..145669834,-!p1@TONSL!0.91!21.28!TONSL;;chr11:65687243..65687276,+!p8@DRAP1!0.91!9.93!DRAP1;;chr12:115122318..115122331,-!p2@TBX3!0.91!7.09!TBX3;;chr12:54410948..54410992,+!p3@HOXC5!0.91!7.09!HOXC5;;chr12:66218420..66218439,+!p12@HMGA2!0.91!7.09!HMGA2;;chr12:66218923..66218934,+!p14@HMGA2!0.91!7.09!HMGA2;;chr16:54320127..54320148,-!p6@IRX3!0.91!7.09!IRX3;;chr17:46675586..46675600,-!p6@HOXB6!0.91!7.09!HOXB6;;chr17:46691732..46691766,-!p4@HOXB8!0.91!7.09!HOXB8;;chr19:47523058..47523114,+!p1@NPAS1!0.91!7.09!NPAS1;;chr1:2461692..2461710,-!p1@HES5!0.91!7.09!HES5;;chr5:3595961..3595975,+!p3@IRX1!0.91!7.09!IRX1;;chr12:54447599..54447630,+!p3@HOXC4!0.90!8.51!HOXC4;;chr2:85980951..85981004,+!p1@ATOH8!0.89!11.35!ATOH8;;chr16:54320617..54320643,-!p3@IRX3!0.88!8.51!IRX3;;chr17:41622765..41622821,-!p2@ETV4!0.87!9.93!ETV4;;chr1:8926441..8926473,-!p10@ENO1!0.87!9.93!ENO1;;chr8:49833948..49833973,-!p2@SNAI2!0.86!42.55!SNAI2;;chr1:170632285..170632309,+!p1@PRRX1!0.86!7.09!PRRX1;;chr14:61116168..61116180,-!p2@SIX1!0.85!7.09!SIX1;;chr16:54320101..54320125,-!p4@IRX3!0.83!8.51!IRX3;;chr20:48599506..48599526,+!p1@SNAI1!0.82!38.30!SNAI1;;chr11:65687158..65687216,+!p4@DRAP1!0.82!34.04!DRAP1;;chr2:239756739..239756755,+!p2@TWIST2!0.82!9.93!TWIST2;;chr22:19748231..19748317,+!p1@TBX1!0.82!5.67!TBX1;;chr4:299227..299272,-!p1@ZNF732!0.82!5.67!ZNF732;;chr11:46316699..46316719,+!p10@CREB3L1!0.82!5.67!CREB3L1;;chr5:3595934..3595957,+!p2@IRX1!0.82!5.67!IRX1;;chr7:27183291..27183324,-!p1@HOXA5!0.82!5.67!HOXA5;;chr17:8027418..8027432,-!p1@HES7!0.82!5.67!HES7;;chr1:23885981..23886002,-!p1@ID3!0.80!1004.29!ID3;;chr11:65667846..65667868,-!p1@FOSL1!0.79!150.36!FOSL1;;chr11:65687362..65687436,+!p3@DRAP1!0.79!25.53!DRAP1;;chr20:42295745..42295765,+!p1@MYBL2!0.77!87.95!MYBL2;;chr6:34204973..34204990,+!p4@HMGA1!0.77!72.34!HMGA1;;chr15:83953397..83953425,-!p1@BNC1!0.77!5.67!BNC1;;chr11:65667884..65667895,-!p2@FOSL1!0.76!19.86!FOSL1;;chr16:54320158..54320200,-!p5@IRX3!0.76!7.09!IRX3;;chr16:54964740..54964789,+!p1@IRX5!0.76!7.09!IRX5;;chr20:32274179..32274213,-!p1@E2F1!0.75!34.04!E2F1;;chr3:12329397..12329433,+!p2@PPARG!0.75!11.35!PPARG;;chr17:59477197..59477212,+!p2@TBX2!0.75!8.51!TBX2;;chr19:13134772..13134822,+!p2@NFIX!0.75!7.09!NFIX;;chr11:65686776..65686787,+!p9@DRAP1!0.75!5.67!DRAP1;;chr5:321810..321877,+!p1@AHRR!0.74!15.60!AHRR;;chr2:214015111..214015179,-!p1@IKZF2!0.74!8.51!IKZF2;;chr6:31126291..31126399,+!p1@TCF19!0.73!46.81!TCF19;;chr12:115121962..115121987,-!p1@TBX3!0.73!41.14!TBX3;;chr5:92918919..92918942,+!p1@NR2F1!0.72!21.28!NR2F1;;chr3:12329358..12329393,+!p3@PPARG!0.72!11.35!PPARG;;chr2:5832493..5832507,+!p2@SOX11!0.72!4.26!SOX11;;chr2:85981073..85981091,+!p5@ATOH8!0.72!4.26!ATOH8;;chr2:96012397..96012417,+!p3@KCNIP3!0.72!4.26!KCNIP3;;chr15:67418177..67418204,+!p9@SMAD3!0.72!4.26!SMAD3;;chr16:54320280..54320291,-!p9@IRX3!0.72!4.26!IRX3;;chr16:86601088..86601105,+!p5@FOXC2!0.72!4.26!FOXC2;;chr17:41622731..41622764,-!p5@ETV4!0.72!4.26!ETV4;;chr17:41623716..41623727,-!p12@ETV4!0.72!4.26!ETV4;;chr17:46621146..46621180,-!p10@HOXB2!0.72!4.26!HOXB2;;chr17:46675469..46675481,-!p4@HOXB6!0.72!4.26!HOXB6;;chr17:46692603..46692621,-!p6@HOXB8!0.72!4.26!HOXB8;;chr19:46801639..46801699,+!p1@HIF3A!0.72!4.26!HIF3A;;chr7:27196217..27196246,-!p2@HOXA7!0.72!4.26!HOXA7;;chr7:96654026..96654061,-!p2@DLX5!0.72!4.26!DLX5;;chr8:60031934..60031986,-!p6@TOX!0.72!4.26!TOX;;chr11:65668011..65668020,-!p3@FOSL1!0.72!4.26!FOSL1;;chr11:65688877..65688891,+!p13@DRAP1!0.72!4.26!DRAP1;;chr12:115122303..115122314,-!p6@TBX3!0.72!4.26!TBX3;;chr12:54393880..54393962,+!p1@HOXC9!0.72!4.26!HOXC9;;chr12:54394059..54394088,+!p3@HOXC9!0.72!4.26!HOXC9;;chr12:54394416..54394467,+!p5@HOXC9!0.72!4.26!HOXC9;;chr12:54402694..54402705,+!p5@HOXC8!0.72!4.26!HOXC8;;chr12:54402729..54402743,+!p3@HOXC8!0.72!4.26!HOXC8;;chr12:54402790..54402805,+!p2@HOXC8!0.72!4.26!HOXC8;;chr12:54447868..54447892,+!p6@HOXC6,p7@HOXC4!0.72!4.26!HOXC6;;chr12:66218413..66218418,+!p17@HMGA2!0.72!4.26!HMGA2;;chr19:1592714..1592762,-!p1@MBD3!0.71!35.46!MBD3;;chr12:3068544..3068597,+!p1@TEAD4!0.70!26.95!TEAD4;;chr20:42295713..42295738,+!p2@MYBL2!0.70!26.95!MYBL2;;chr1:54204818..54204870,-!p@chr1:54204818..54204870,-!0.69!4.26!GLIS1;;chr12:66218152..66218174,+!p10@HMGA2!0.69!4.26!HMGA2;;chr12:7079780..7079791,-!p2@PHB2!0.68!22.70!PHB2;;chr7:137686763..137686784,-!p5@CREB3L2!0.68!7.09!CREB3L2;;chr11:46299186..46299195,+!p3@CREB3L1!0.68!4.26!CREB3L1;;chr7:150945754..150945789,-!p2@SMARCD3!0.67!12.77!SMARCD3;;chr11:65686952..65686975,+!p5@DRAP1!0.66!22.70!DRAP1;;chr3:52001426..52001447,-!p3@PCBP4!0.66!11.35!PCBP4;;chr1:247171347..247171366,-!p2@ZNF695!0.66!7.09!ZNF695;;chr20:32274150..32274166,-!p2@E2F1!0.65!7.09!E2F1;;chr5:92919068..92919082,+!p5@NR2F1!0.65!4.26!NR2F1;;chr8:49833978..49833996,-!p1@SNAI2!0.64!82.27!SNAI2;;chr5:138609782..138609826,+!p5@MATR3!0.64!25.53!MATR3;;chr19:24097675..24097699,+!p1@ZNF726!0.64!12.77!ZNF726;;chr1:151032833..151032850,+!p3@MLLT11!0.64!8.51!MLLT11;;chr20:50721803..50721857,-!p2@ZFP64!0.64!5.67!ZFP64;;chr12:66218003..66218018,+!p9@HMGA2!0.64!4.26!HMGA2;;chr13:114238987..114238994,+!p2@TFDP1!0.64!4.26!TFDP1;;chr3:52001448..52001478,-!p2@PCBP4!0.63!53.90!PCBP4;;chr19:58962974..58963001,+!p1@ZNF324B!0.63!17.02!ZNF324B;;chr8:60031682..60031710,-!p2@TOX!0.63!5.67!TOX;;chr5:72744562..72744573,-!p3@FOXD1!0.63!4.26!FOXD1;;chr15:96874012..96874042,+!p2@NR2F2!0.62!34.04!NR2F2;;chr8:77593474..77593612,+!p1@ZFHX4!0.62!15.60!ZFHX4;;chr1:8483878..8483907,-!p4@RERE!0.62!14.18!RERE;;chr2:85981222..85981259,+!p2@ATOH8!0.62!5.67!ATOH8;;chr3:141087393..141087426,+!p3@ZBTB38!0.61!14.18!ZBTB38;;chr1:8483756..8483809,-!p5@RERE!0.61!9.93!RERE;;chr19:45260775..45260838,+!p5@BCL3!0.61!4.26!BCL3;;chr11:61520075..61520136,+!p1@C11orf9!0.60!7.09!C11orf9;;chr13:74708269..74708291,-!p7@KLF12!0.60!4.26!KLF12;;chr1:8938709..8938720,-!p3@ENO1!0.59!171.64!ENO1;;chr20:39946361..39946379,-!p2@ZHX3!0.59!9.93!ZHX3;;chr16:54320675..54320715,-!p1@IRX3!0.59!7.09!IRX3;;chr19:49864746..49864780,-!p2@TEAD2!0.59!4.26!TEAD2;;chr17:41623692..41623715,-!p1@ETV4!0.58!14.18!ETV4;;chr3:126076264..126076305,-!p2@KLF15!0.58!4.26!KLF15;;chr2:200320768..200320800,-!p4@SATB2!0.58!2.84!SATB2;;chr2:85981008..85981025,+!p7@ATOH8!0.58!2.84!ATOH8;;chr4:109089215..109089236,-!p25@LEF1!0.58!2.84!LEF1;;chr4:57522674..57522699,-!p5@HOPX!0.58!2.84!HOPX;;chr15:80843484..80843499,+!p5@ARNT2!0.58!2.84!ARNT2;;chr15:83953373..83953386,-!p2@BNC1!0.58!2.84!BNC1;;chr15:90294087..90294115,-!p1@MESP1!0.58!2.84!MESP1;;chr16:54320322..54320343,-!p7@IRX3!0.58!2.84!IRX3;;chr16:86600870..86600921,+!p2@FOXC2!0.58!2.84!FOXC2;;chr17:46655672..46655697,-!p3@HOXB4!0.58!2.84!HOXB4;;chr17:46671504..46671541,-!p2@HOXB5!0.58!2.84!HOXB5;;chr17:46675539..46675551,-!p7@HOXB6!0.58!2.84!HOXB6;;chr17:46692318..46692362,-!p5@HOXB8!0.58!2.84!HOXB8;;chr17:46703212..46703238,-!p2@HOXB9!0.58!2.84!HOXB9;;chr19:11750543..11750565,+!p2@ZNF833P!0.58!2.84!ZNF833P;;chr5:76382989..76383001,-!p4@ZBED3!0.58!2.84!ZBED3;;chr5:9291878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:8185346..8185360,+!p2@FOXJ2!0.19!1.42!FOXJ2;;chr3:40547505..40547545,+!p2@ZNF620!0.19!1.42!ZNF620;;chr3:71114279..71114308,-!p13@FOXP1!0.19!1.42!FOXP1;;chr4:103422457..103422469,+!p3@NFKB1!0.19!1.42!NFKB1;;chr11:65101305..65101359,+!p1@DPF2!0.18!53.90!DPF2;;chr6:155635583..155635644,-!p1@TFB1M!0.18!17.02!TFB1M;;chr19:4066803..4066886,-!p1@ZBTB7A!0.18!14.18!ZBTB7A;;chr1:43312258..43312310,+!p1@ZNF691!0.18!12.77!ZNF691;;chr15:96873892..96873919,+!p4@NR2F2!0.18!12.77!NR2F2;;chr12:57400261..57400344,-!p1@ZBTB39!0.18!5.67!ZBTB39;;chr8:146176199..146176272,-!p1@ZNF16!0.18!5.67!ZNF16;;chr6:35227282..35227330,+!p2@ZNF76!0.18!4.26!ZNF76;;chr10:94449675..94449694,+!p2@HHEX!0.18!2.84!HHEX;;chr2:172967621..172967637,-!p1@DLX2!0.18!2.84!DLX2;;chr2:208030299..208030332,-!p6@KLF7!0.18!1.42!KLF7;;chr3:150126101..150126118,+!p6@TSC22D2!0.18!1.42!TSC22D2;;chr3:168864315..168864339,-!p2@MECOM!0.18!1.42!MECOM;;chr4:87968203..87968221,+!p11@AFF1!0.18!1.42!AFF1;;chr15:57211660..57211687,+!p6@TCF12!0.18!1.42!TCF12;;chr19:17356189..17356221,-!p2@NR2F6!0.18!1.42!NR2F6;;chr19:23941647..23941672,-!p2@ZNF681!0.18!1.42!ZNF681;;chr19:54024251..54024305,+!p4@ZNF331!0.18!1.42!ZNF331;;chr1:151032922..151032951,+!p2@MLLT11!0.18!1.42!MLLT11;;chr1:151431811..151431832,-!p3@POGZ!0.18!1.42!POGZ;;chr1:8483849..8483868,-!p14@RERE!0.18!1.42!RERE;;chr12:80084279..80084293,-!p8@PAWR!0.18!1.42!PAWR;;chr14:64971014..64971044,+!p4@ZBTB1!0.18!1.42!ZBTB1;;chr6:45390269..45390298,+!p5@RUNX2!0.18!1.42!RUNX2;;chr7:99613195..99613206,+!p4@ZKSCAN1!0.18!1.42!ZKSCAN1;;chr9:109625229..109625282,+!p2@ZNF462!0.18!1.42!ZNF462;;chr9:110252074..110252079,-!p3@KLF4!0.18!1.42!KLF4;;chr8:128748470..128748487,+!p1@MYC!0.17!147.52!MYC;;chr3:71114066..71114114,-!p1@FOXP1!0.17!26.95!FOXP1;;chr3:126194707..126194798,-!p1@ZXDC!0.17!21.28!ZXDC;;chr14:64970494..64970578,-!p1@ZBTB25!0.17!12.77!ZBTB25;;chr6:41514078..41514158,+!p1@FOXP4!0.17!11.35!FOXP4;;chr19:1592828..1592910,-!p2@MBD3!0.17!9.93!MBD3;;chr12:27485785..27485816,+!p1@ARNTL2!0.17!8.51!ARNTL2;;chr17:42296855..42296894,-!p4@UBTF!0.17!4.26!UBTF;;chr1:43148792..43148849,+!p2@YBX1!0.17!4.26!YBX1;;chr12:96588368..96588394,+!p3@ELK3!0.17!2.84!ELK3;;chr18:3451646..3451691,+!p3@TGIF1!0.17!2.84!TGIF1;;chr14:89029308..89029318,+!p3@ZC3H14!0.17!1.42!ZC3H14;;chr15:31619570..31619615,+!p6@KLF13!0.17!1.42!KLF13;;chr15:57511609..57511651,+!p2@TCF12!0.17!1.42!TCF12;;chr16:30418894..30418909,+!p2@ZNF771!0.17!1.42!ZNF771;;chr18:3451584..3451606,+!p12@TGIF1!0.17!1.42!TGIF1;;chr18:47814010..47814021,-!p3@CXXC1!0.17!1.42!CXXC1;;chr19:12476469..12476509,-!p2@ZNF442!0.17!1.42!ZNF442;;chr19:12662314..12662328,-!p2@ZNF564!0.17!1.42!ZNF564;;chr19:22817119..22817145,+!p1@ZNF492!0.17!1.42!ZNF492;;chr19:37997812..37997866,+!p1@ZNF793!0.17!1.42!ZNF793;;chr19:42788636..42788660,+!p1@CIC!0.17!1.42!CIC;;chr1:226595648..226595659,-!p3@PARP1!0.17!1.42!PARP1;;chr1:249132462..249132481,+!p6@ZNF672!0.17!1.42!ZNF672;;chr6:1610293..1610310,+!p1@FOXC1!0.17!1.42!FOXC1;;chr6:21597514..21597578,+!p4@SOX4!0.17!1.42!SOX4;;chr13:45151509..45151539,-!p6@TSC22D1!0.17!1.42!TSC22D1;;chr12:53835508..53835533,+!p1@PRR13,p2@PCBP2!0.16!97.88!PCBP2;;chr8:145515263..145515299,+!p1@HSF1!0.16!93.62!HSF1;;chr3:52008016..52008071,-!p1@ABHD14A-ACY1,p1@ABHD14B,p1@PCBP4!0.16!75.18!PCBP4;;chr16:30798492..30798535,-!p1@ZNF629!0.16!19.86!ZNF629;;chr11:695006..695074,-!p1@DEAF1!0.16!19.86!DEAF1;;chr19:57702846..57702891,+!p1@ZNF264!0.16!12.77!ZNF264;; | ||
|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000034;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000134;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000222;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002092;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002540;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002405 | |||
|ffid_belonging_in_development=CL:0000134 | |ffid_belonging_in_development=CL:0000134 | ||
|fonse_cell_line= | |fonse_cell_line= | ||
Line 40: | Line 42: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Mesenchymal%2520Stem%2520Cells%2520-%2520bone%2520marrow%252c%2520donor2.CNhs12100.11616-122A5.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Mesenchymal%2520Stem%2520Cells%2520-%2520bone%2520marrow%252c%2520donor2.CNhs12100.11616-122A5.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Mesenchymal%2520Stem%2520Cells%2520-%2520bone%2520marrow%252c%2520donor2.CNhs12100.11616-122A5.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Mesenchymal%2520Stem%2520Cells%2520-%2520bone%2520marrow%252c%2520donor2.CNhs12100.11616-122A5.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Mesenchymal%2520Stem%2520Cells%2520-%2520bone%2520marrow%252c%2520donor2.CNhs12100.11616-122A5.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:11616-122A5 | |id=FF:11616-122A5 | ||
|is_a=EFO:0002091;;FF:0000097 | |is_a=EFO:0002091;;FF:0000097 | ||
|is_obsolete= | |is_obsolete= | ||
|library_id=CNhs12100 | |library_id=CNhs12100 | ||
|library_id_phase_based=2:CNhs12100 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11616 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11616 | |||
|name=Mesenchymal Stem Cells - bone marrow, donor2 | |name=Mesenchymal Stem Cells - bone marrow, donor2 | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
Line 49: | Line 61: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs12100,LSID839,release011,COMPLETED | |profile_hcage=CNhs12100,LSID839,release011,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=SRhi10005,,, | |profile_srnaseq=SRhi10005,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
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| ||
Line 88: | Line 101: | ||
|top_motifs=PBX1:1.64580801491;GZF1:1.27413080254;HOX{A5,B5}:1.21338508684;NR3C1:1.17443205097;NR5A1,2:1.04595257148;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:1.01504740023;HES1:1.00553307235;GFI1:0.962438142366;LEF1_TCF7_TCF7L1,2:0.919576398529;POU2F1..3:0.903700605464;NR6A1:0.834369360824;GTF2A1,2:0.821993479463;ONECUT1,2:0.737785482418;TOPORS:0.733832068985;RXRA_VDR{dimer}:0.71787991318;ESR1:0.705908852782;EN1,2:0.696135656641;GFI1B:0.684810325489;SPZ1:0.675619727113;E2F1..5:0.654628775575;TAL1_TCF{3,4,12}:0.651749397411;NFE2L1:0.61894635739;PAX3,7:0.582304201164;PPARG:0.580091695489;HOX{A6,A7,B6,B7}:0.579357272614;ZIC1..3:0.558784042379;KLF4:0.546205530723;STAT5{A,B}:0.501267129103;PAX8:0.494749333704;RXR{A,B,G}:0.494051962427;NANOG:0.472090477462;FOXD3:0.444335739999;IKZF1:0.418305201344;AR:0.412792997283;SRF:0.39734058985;EBF1:0.387872482475;PRRX1,2:0.376286458796;POU3F1..4:0.367606382979;AIRE:0.362999119505;RREB1:0.354093319281;FOXL1:0.349773236668;HOXA9_MEIS1:0.345734315383;SOX17:0.329432816282;NFY{A,B,C}:0.325308131363;LMO2:0.305908467105;TLX1..3_NFIC{dimer}:0.278491459624;TFAP4:0.277444995441;ZNF238:0.274386036901;HNF4A_NR2F1,2:0.234844586619;TFCP2:0.230939101443;ZBTB6:0.225768951225;TFAP2{A,C}:0.221235518078;TFDP1:0.196955087146;TEAD1:0.195937456668;ESRRA:0.191544333606;VSX1,2:0.18643241792;MYB:0.181086451844;TBX4,5:0.173800347709;MEF2{A,B,C,D}:0.163451998792;ZNF423:0.158808064829;POU5F1:0.146334072343;UFEwm:0.143048363967;GLI1..3:0.134869241165;NFE2L2:0.114983936659;XCPE1{core}:0.111594260411;PDX1:0.108820866194;BACH2:0.105127176016;RORA:0.103267325761;TBP:0.099837553802;ATF6:0.0960428276663;MYOD1:0.0948730468207;OCT4_SOX2{dimer}:0.0856673683432;LHX3,4:0.0835232243026;SOX{8,9,10}:0.0731012228916;NR1H4:0.069083124427;POU1F1:0.0658624128706;HIC1:0.0616768179589;DBP:0.0573840211018;TP53:0.0493261621722;HLF:0.045790904708;FOS_FOS{B,L1}_JUN{B,D}:0.0233013315609;EVI1:0.0167643483079;NFE2:0.0150599122563;YY1:0.00508877752231;MTF1:0.00259939043368;GATA6:0.00174036793197;REST:0.00143167842561;HNF1A:-3.64726836786e-05;FOSL2:-0.00840922079431;GCM1,2:-0.0131574701717;HMX1:-0.0204146801295;ARID5B:-0.0508761933649;CUX2:-0.0754842998965;RUNX1..3:-0.0854361408022;NKX2-3_NKX2-5:-0.0865822039223;MAFB:-0.108601289913;CRX:-0.112277117885;ALX4:-0.118120912955;PAX1,9:-0.121839158971;FOXP3:-0.129024278831;ZNF148:-0.151462238246;STAT2,4,6:-0.17163262953;bHLH_family:-0.197134787831;RFX1:-0.208805340396;ADNP_IRX_SIX_ZHX:-0.216352789852;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.23028120921;MTE{core}:-0.246958192842;NKX2-2,8:-0.25254883743;POU6F1:-0.258911936273;NFKB1_REL_RELA:-0.265477899851;NKX2-1,4:-0.268861950822;TGIF1:-0.278352896493;SOX5:-0.296900904819;TFAP2B:-0.317224942215;JUN:-0.322401869058;ZNF384:-0.323761243978;BREu{core}:-0.323975266764;NRF1:-0.32978888039;PATZ1:-0.335226822391;PITX1..3:-0.337978652066;PAX4:-0.346449346497;FOXQ1:-0.353680172472;ZNF143:-0.358250314938;GTF2I:-0.375167126805;EGR1..3:-0.376639835019;AHR_ARNT_ARNT2:-0.383087326534;HOX{A4,D4}:-0.423628101943;ALX1:-0.429394749905;PRDM1:-0.455579930094;SNAI1..3:-0.501306807579;SPIB:-0.509529568792;MED-1{core}:-0.526065166295;HSF1,2:-0.532247516822;NKX6-1,2:-0.536936815502;ETS1,2:-0.553774188771;FOX{F1,F2,J1}:-0.560065722903;NHLH1,2:-0.570295610313;DMAP1_NCOR{1,2}_SMARC:-0.572389324535;NFIX:-0.577248564065;CREB1:-0.580328862043;MYBL2:-0.582832276649;CEBPA,B_DDIT3:-0.586540492481;HAND1,2:-0.605291331608;NANOG{mouse}:-0.608891223239;TEF:-0.615473454046;NFATC1..3:-0.626467335358;GATA4:-0.634191714886;ZFP161:-0.638474361326;ATF5_CREB3:-0.642056781487;MYFfamily:-0.646733122215;SPI1:-0.653498384576;ELF1,2,4:-0.658497012429;HBP1_HMGB_SSRP1_UBTF:-0.680050196824;ELK1,4_GABP{A,B1}:-0.680103759554;FOXM1:-0.688781643745;IKZF2:-0.690070673223;NKX3-2:-0.698645470134;CDC5L:-0.704104094159;MZF1:-0.704440472639;XBP1:-0.734959480124;CDX1,2,4:-0.768298732161;PAX6:-0.77763839738;FOXA2:-0.784889091902;T:-0.797887871622;SP1:-0.830126046063;FOX{I1,J2}:-0.835001591394;ZEB1:-0.841872608179;NFIL3:-0.84872339103;PAX5:-0.851646247482;FOXP1:-0.869160949683;ZBTB16:-0.87781209132;RBPJ:-0.881425808725;IRF7:-0.883005778547;NKX3-1:-0.91300655423;SOX2:-0.930462975054;MAZ:-0.97982841445;SMAD1..7,9:-0.986123197971;PAX2:-0.999475362089;ATF2:-1.01075294878;RFX2..5_RFXANK_RFXAP:-1.15406113504;IRF1,2:-1.17488691747;HMGA1,2:-1.19527919882;ATF4:-1.22126821121;HIF1A:-1.29288907352;EP300:-1.33440996911;BPTF:-1.50356288143;SREBF1,2:-1.56600509311;FOX{D1,D2}:-1.58615920476;TLX2:-1.7311010613;FOXO1,3,4:-1.87564486704;STAT1,3:-1.88332303363;FOXN1:-2.05750397403 | |top_motifs=PBX1:1.64580801491;GZF1:1.27413080254;HOX{A5,B5}:1.21338508684;NR3C1:1.17443205097;NR5A1,2:1.04595257148;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:1.01504740023;HES1:1.00553307235;GFI1:0.962438142366;LEF1_TCF7_TCF7L1,2:0.919576398529;POU2F1..3:0.903700605464;NR6A1:0.834369360824;GTF2A1,2:0.821993479463;ONECUT1,2:0.737785482418;TOPORS:0.733832068985;RXRA_VDR{dimer}:0.71787991318;ESR1:0.705908852782;EN1,2:0.696135656641;GFI1B:0.684810325489;SPZ1:0.675619727113;E2F1..5:0.654628775575;TAL1_TCF{3,4,12}:0.651749397411;NFE2L1:0.61894635739;PAX3,7:0.582304201164;PPARG:0.580091695489;HOX{A6,A7,B6,B7}:0.579357272614;ZIC1..3:0.558784042379;KLF4:0.546205530723;STAT5{A,B}:0.501267129103;PAX8:0.494749333704;RXR{A,B,G}:0.494051962427;NANOG:0.472090477462;FOXD3:0.444335739999;IKZF1:0.418305201344;AR:0.412792997283;SRF:0.39734058985;EBF1:0.387872482475;PRRX1,2:0.376286458796;POU3F1..4:0.367606382979;AIRE:0.362999119505;RREB1:0.354093319281;FOXL1:0.349773236668;HOXA9_MEIS1:0.345734315383;SOX17:0.329432816282;NFY{A,B,C}:0.325308131363;LMO2:0.305908467105;TLX1..3_NFIC{dimer}:0.278491459624;TFAP4:0.277444995441;ZNF238:0.274386036901;HNF4A_NR2F1,2:0.234844586619;TFCP2:0.230939101443;ZBTB6:0.225768951225;TFAP2{A,C}:0.221235518078;TFDP1:0.196955087146;TEAD1:0.195937456668;ESRRA:0.191544333606;VSX1,2:0.18643241792;MYB:0.181086451844;TBX4,5:0.173800347709;MEF2{A,B,C,D}:0.163451998792;ZNF423:0.158808064829;POU5F1:0.146334072343;UFEwm:0.143048363967;GLI1..3:0.134869241165;NFE2L2:0.114983936659;XCPE1{core}:0.111594260411;PDX1:0.108820866194;BACH2:0.105127176016;RORA:0.103267325761;TBP:0.099837553802;ATF6:0.0960428276663;MYOD1:0.0948730468207;OCT4_SOX2{dimer}:0.0856673683432;LHX3,4:0.0835232243026;SOX{8,9,10}:0.0731012228916;NR1H4:0.069083124427;POU1F1:0.0658624128706;HIC1:0.0616768179589;DBP:0.0573840211018;TP53:0.0493261621722;HLF:0.045790904708;FOS_FOS{B,L1}_JUN{B,D}:0.0233013315609;EVI1:0.0167643483079;NFE2:0.0150599122563;YY1:0.00508877752231;MTF1:0.00259939043368;GATA6:0.00174036793197;REST:0.00143167842561;HNF1A:-3.64726836786e-05;FOSL2:-0.00840922079431;GCM1,2:-0.0131574701717;HMX1:-0.0204146801295;ARID5B:-0.0508761933649;CUX2:-0.0754842998965;RUNX1..3:-0.0854361408022;NKX2-3_NKX2-5:-0.0865822039223;MAFB:-0.108601289913;CRX:-0.112277117885;ALX4:-0.118120912955;PAX1,9:-0.121839158971;FOXP3:-0.129024278831;ZNF148:-0.151462238246;STAT2,4,6:-0.17163262953;bHLH_family:-0.197134787831;RFX1:-0.208805340396;ADNP_IRX_SIX_ZHX:-0.216352789852;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.23028120921;MTE{core}:-0.246958192842;NKX2-2,8:-0.25254883743;POU6F1:-0.258911936273;NFKB1_REL_RELA:-0.265477899851;NKX2-1,4:-0.268861950822;TGIF1:-0.278352896493;SOX5:-0.296900904819;TFAP2B:-0.317224942215;JUN:-0.322401869058;ZNF384:-0.323761243978;BREu{core}:-0.323975266764;NRF1:-0.32978888039;PATZ1:-0.335226822391;PITX1..3:-0.337978652066;PAX4:-0.346449346497;FOXQ1:-0.353680172472;ZNF143:-0.358250314938;GTF2I:-0.375167126805;EGR1..3:-0.376639835019;AHR_ARNT_ARNT2:-0.383087326534;HOX{A4,D4}:-0.423628101943;ALX1:-0.429394749905;PRDM1:-0.455579930094;SNAI1..3:-0.501306807579;SPIB:-0.509529568792;MED-1{core}:-0.526065166295;HSF1,2:-0.532247516822;NKX6-1,2:-0.536936815502;ETS1,2:-0.553774188771;FOX{F1,F2,J1}:-0.560065722903;NHLH1,2:-0.570295610313;DMAP1_NCOR{1,2}_SMARC:-0.572389324535;NFIX:-0.577248564065;CREB1:-0.580328862043;MYBL2:-0.582832276649;CEBPA,B_DDIT3:-0.586540492481;HAND1,2:-0.605291331608;NANOG{mouse}:-0.608891223239;TEF:-0.615473454046;NFATC1..3:-0.626467335358;GATA4:-0.634191714886;ZFP161:-0.638474361326;ATF5_CREB3:-0.642056781487;MYFfamily:-0.646733122215;SPI1:-0.653498384576;ELF1,2,4:-0.658497012429;HBP1_HMGB_SSRP1_UBTF:-0.680050196824;ELK1,4_GABP{A,B1}:-0.680103759554;FOXM1:-0.688781643745;IKZF2:-0.690070673223;NKX3-2:-0.698645470134;CDC5L:-0.704104094159;MZF1:-0.704440472639;XBP1:-0.734959480124;CDX1,2,4:-0.768298732161;PAX6:-0.77763839738;FOXA2:-0.784889091902;T:-0.797887871622;SP1:-0.830126046063;FOX{I1,J2}:-0.835001591394;ZEB1:-0.841872608179;NFIL3:-0.84872339103;PAX5:-0.851646247482;FOXP1:-0.869160949683;ZBTB16:-0.87781209132;RBPJ:-0.881425808725;IRF7:-0.883005778547;NKX3-1:-0.91300655423;SOX2:-0.930462975054;MAZ:-0.97982841445;SMAD1..7,9:-0.986123197971;PAX2:-0.999475362089;ATF2:-1.01075294878;RFX2..5_RFXANK_RFXAP:-1.15406113504;IRF1,2:-1.17488691747;HMGA1,2:-1.19527919882;ATF4:-1.22126821121;HIF1A:-1.29288907352;EP300:-1.33440996911;BPTF:-1.50356288143;SREBF1,2:-1.56600509311;FOX{D1,D2}:-1.58615920476;TLX2:-1.7311010613;FOXO1,3,4:-1.87564486704;STAT1,3:-1.88332303363;FOXN1:-2.05750397403 | ||
|xref= | |xref= | ||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11616-122A5;search_select_hide=table117:FF:11616-122A5 | |||
}} | }} |
Latest revision as of 18:12, 4 June 2020
Name: | Mesenchymal Stem Cells - bone marrow, donor2 |
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Species: | Human (Homo sapiens) |
Library ID: | CNhs12100 |
Sample type: | primary cells |
Genomic View: | UCSC |
RefEX: | Specific genes |
FANTOM CAT: | 1, 2, 3, 4, 5, 6 |
CAGEd-oPOSSUM: | link |
ZENBU report : | link |
Additional information | ||||||||||||||||||||||||||||
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Sample information
RNA information
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CAGE Accession numbers | ||||||||||||||||||||||||||||||||||||||||||||||
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Download raw sequence, BAM & CTSS | ||||||||||||||
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs12100
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs12100
Novel motif | Logo | P-value |
---|---|---|
1 | 1 | 0.133 |
10 | 10 | 0.358 |
100 | 100 | 0.395 |
101 | 101 | 0.536 |
102 | 102 | 0.548 |
103 | 103 | 0.264 |
104 | 104 | 0.401 |
105 | 105 | 0.123 |
106 | 106 | 0.111 |
107 | 107 | 0.125 |
108 | 108 | 0.537 |
109 | 109 | 0.0284 |
11 | 11 | 0.0119 |
110 | 110 | 0.0609 |
111 | 111 | 0.12 |
112 | 112 | 0.252 |
113 | 113 | 0.569 |
114 | 114 | 0.243 |
115 | 115 | 0.976 |
116 | 116 | 0.135 |
117 | 117 | 0.404 |
118 | 118 | 0.39 |
119 | 119 | 0.257 |
12 | 12 | 0.916 |
120 | 120 | 0.0783 |
121 | 121 | 0.963 |
122 | 122 | 0.999 |
123 | 123 | 0.915 |
124 | 124 | 0.672 |
125 | 125 | 0.139 |
126 | 126 | 0.58 |
127 | 127 | 0.0661 |
128 | 128 | 0.21 |
129 | 129 | 0.586 |
13 | 13 | 0.32 |
130 | 130 | 0.768 |
131 | 131 | 0.621 |
132 | 132 | 0.338 |
133 | 133 | 0.449 |
134 | 134 | 0.831 |
135 | 135 | 0.583 |
136 | 136 | 0.646 |
137 | 137 | 0.197 |
138 | 138 | 0.203 |
139 | 139 | 0.374 |
14 | 14 | 0.982 |
140 | 140 | 0.335 |
141 | 141 | 0.293 |
142 | 142 | 0.272 |
143 | 143 | 0.0807 |
144 | 144 | 0.759 |
145 | 145 | 0.098 |
146 | 146 | 0.662 |
147 | 147 | 0.438 |
148 | 148 | 0.818 |
149 | 149 | 0.189 |
15 | 15 | 0.165 |
150 | 150 | 0.35 |
151 | 151 | 0.454 |
152 | 152 | 0.206 |
153 | 153 | 0.916 |
154 | 154 | 0.746 |
155 | 155 | 0.749 |
156 | 156 | 0.236 |
157 | 157 | 0.753 |
158 | 158 | 0.912 |
159 | 159 | 0.715 |
16 | 16 | 0.23 |
160 | 160 | 0.0026 |
161 | 161 | 0.938 |
162 | 162 | 0.311 |
163 | 163 | 0.396 |
164 | 164 | 0.66 |
165 | 165 | 0.717 |
166 | 166 | 0.731 |
167 | 167 | 0.538 |
168 | 168 | 0.796 |
169 | 169 | 0.0401 |
17 | 17 | 0.18 |
18 | 18 | 0.0801 |
19 | 19 | 0.111 |
2 | 2 | 0.673 |
20 | 20 | 0.898 |
21 | 21 | 0.514 |
22 | 22 | 0.161 |
23 | 23 | 0.247 |
24 | 24 | 0.819 |
25 | 25 | 0.79 |
26 | 26 | 0.0112 |
27 | 27 | 0.258 |
28 | 28 | 0.481 |
29 | 29 | 0.217 |
3 | 3 | 0.226 |
30 | 30 | 0.578 |
31 | 31 | 0.427 |
32 | 32 | 4.8488e-4 |
33 | 33 | 0.239 |
34 | 34 | 0.678 |
35 | 35 | 0.688 |
36 | 36 | 0.055 |
37 | 37 | 0.151 |
38 | 38 | 0.232 |
39 | 39 | 0.542 |
4 | 4 | 0.409 |
40 | 40 | 0.0176 |
41 | 41 | 0.757 |
42 | 42 | 0.488 |
43 | 43 | 0.142 |
44 | 44 | 0.377 |
45 | 45 | 0.6 |
46 | 46 | 0.0103 |
47 | 47 | 0.11 |
48 | 48 | 0.1 |
49 | 49 | 0.0902 |
5 | 5 | 0.589 |
50 | 50 | 0.596 |
51 | 51 | 0.326 |
52 | 52 | 0.899 |
53 | 53 | 0.993 |
54 | 54 | 0.339 |
55 | 55 | 0.343 |
56 | 56 | 0.252 |
57 | 57 | 0.0675 |
58 | 58 | 0.898 |
59 | 59 | 0.0451 |
6 | 6 | 0.946 |
60 | 60 | 0.582 |
61 | 61 | 0.573 |
62 | 62 | 0.406 |
63 | 63 | 0.165 |
64 | 64 | 0.101 |
65 | 65 | 0.0554 |
66 | 66 | 0.0483 |
67 | 67 | 0.888 |
68 | 68 | 0.377 |
69 | 69 | 0.00779 |
7 | 7 | 0.578 |
70 | 70 | 0.342 |
71 | 71 | 0.0534 |
72 | 72 | 0.745 |
73 | 73 | 0.0915 |
74 | 74 | 0.869 |
75 | 75 | 0.256 |
76 | 76 | 0.872 |
77 | 77 | 0.183 |
78 | 78 | 0.334 |
79 | 79 | 0.143 |
8 | 8 | 0.00854 |
80 | 80 | 0.847 |
81 | 81 | 0.335 |
82 | 82 | 0.191 |
83 | 83 | 0.502 |
84 | 84 | 0.37 |
85 | 85 | 0.228 |
86 | 86 | 0.845 |
87 | 87 | 0.503 |
88 | 88 | 0.377 |
89 | 89 | 0.113 |
9 | 9 | 0.443 |
90 | 90 | 0.702 |
91 | 91 | 0.329 |
92 | 92 | 0.275 |
93 | 93 | 0.211 |
94 | 94 | 0.0876 |
95 | 95 | 0.0823 |
96 | 96 | 0.28 |
97 | 97 | 0.746 |
98 | 98 | 0.093 |
99 | 99 | 0.00863 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs12100
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
EFO:0002091 biological replicate
FF:0000097 human mesenchymal stem cell of bone marrow sample
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000723 (somatic stem cell)
0000048 (multi fate stem cell)
0000548 (animal cell)
0002320 (connective tissue cell)
0002371 (somatic cell)
0000219 (motile cell)
0000134 (mesenchymal cell)
0000255 (eukaryotic cell)
0000034 (stem cell)
0002092 (bone marrow cell)
0002540 (mesenchymal stem cell of the bone marrow)
UBERON: Anatomy
0000468 (multi-cellular organism)
0002371 (bone marrow)
0001474 (bone element)
0002384 (connective tissue)
0000479 (tissue)
0000062 (organ)
0004120 (mesoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0004765 (skeletal element)
0010317 (germ layer / neural crest derived structure)
0002204 (musculoskeletal system)
0001434 (skeletal system)
0002390 (hematopoietic system)
0002193 (hemolymphoid system)
0002405 (immune system)
FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000097 (human mesenchymal stem cell of bone marrow sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000134 (mesenchymal cell)