FF:11629-122B9: Difference between revisions
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{{f5samples | {{f5samples | ||
|ancestors_in_anatomy_facet=UBERON: | |DRA_sample_Accession=CAGE@SAMD00004807 | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL: | |DRA_sample_Accession_RNASeq=sRNA-Seq@SAMD00004807 | ||
|accession_numbers=CAGE;DRX008366;DRR009238;DRZ000663;DRZ002048;DRZ012013;DRZ013398 | |||
|accession_numbers_RNASeq=sRNA-Seq;DRX037132;DRR041498;DRZ007140 | |||
|ancestors_in_anatomy_facet=UBERON:0002331,UBERON:0002384,UBERON:0000479,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0000481,UBERON:0001062,UBERON:0000478,UBERON:0003104,UBERON:0010317,UBERON:0003422,UBERON:0009142 | |||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000723,CL:0000048,CL:0000988,CL:0000548,CL:0002320,CL:0002371,CL:0000081,CL:0000219,CL:0000134,CL:0000349,CL:0000255,CL:0000034,CL:0002569 | |||
|ancestors_in_disease_facet= | |ancestors_in_disease_facet= | ||
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000001,FF:0000117 | |||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|data_phase=2 | |||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score= | |||
|fonse_cell_line= | |fonse_cell_line= | ||
|fonse_cell_line_closure= | |fonse_cell_line_closure= | ||
| Line 35: | Line 44: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Multipotent%2520Cord%2520Blood%2520Unrestricted%2520Somatic%2520Stem%2520Cells%252c%2520donor2.CNhs12105.11629-122B9.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Multipotent%2520Cord%2520Blood%2520Unrestricted%2520Somatic%2520Stem%2520Cells%252c%2520donor2.CNhs12105.11629-122B9.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Multipotent%2520Cord%2520Blood%2520Unrestricted%2520Somatic%2520Stem%2520Cells%252c%2520donor2.CNhs12105.11629-122B9.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Multipotent%2520Cord%2520Blood%2520Unrestricted%2520Somatic%2520Stem%2520Cells%252c%2520donor2.CNhs12105.11629-122B9.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Multipotent%2520Cord%2520Blood%2520Unrestricted%2520Somatic%2520Stem%2520Cells%252c%2520donor2.CNhs12105.11629-122B9.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:11629-122B9 | |id=FF:11629-122B9 | ||
|is_a=EFO:0002091;;FF: | |is_a=EFO:0002091;;FF:0000117 | ||
|is_obsolete= | |||
|library_id=CNhs12105 | |||
|library_id_phase_based=2:CNhs12105 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11629 | |||
|microRNAs_nonnovel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#srna;sample;SRhi10009.CAGATC.11629 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11629 | |||
|microRNAs_novel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer_novel/#/human#srna;sample;SRhi10009.CAGATC.11629 | |||
|name=Multipotent Cord Blood Unrestricted Somatic Stem Cells, donor2 | |name=Multipotent Cord Blood Unrestricted Somatic Stem Cells, donor2 | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
| Line 42: | Line 65: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs12105,LSID839,release011,COMPLETED | |profile_hcage=CNhs12105,LSID839,release011,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=SRhi10009,,, | |profile_srnaseq=SRhi10009,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
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| |||
|rna_box=122 | |rna_box=122 | ||
|rna_catalog_number=N/A | |rna_catalog_number=N/A | ||
| Line 56: | Line 82: | ||
|rna_tube_id=122B9 | |rna_tube_id=122B9 | ||
|rna_weight_ug=49.6 | |rna_weight_ug=49.6 | ||
|rnaseq_library_id=SRhi10009.CAGATC | |||
|sample_age=? | |sample_age=? | ||
|sample_category=primary cells | |||
|sample_cell_catalog=HMpC-500 | |sample_cell_catalog=HMpC-500 | ||
|sample_cell_line= | |sample_cell_line= | ||
| Line 69: | Line 97: | ||
|sample_ethnicity=C | |sample_ethnicity=C | ||
|sample_experimental_condition= | |sample_experimental_condition= | ||
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;3.45271141039483e-205!GO:0005737;cytoplasm;2.83137274594296e-186!GO:0043226;organelle;3.78184985156736e-159!GO:0043229;intracellular organelle;8.33529332591802e-159!GO:0043231;intracellular membrane-bound organelle;1.33713565611832e-155!GO:0043227;membrane-bound organelle;2.42692837684017e-155!GO:0044444;cytoplasmic part;3.96856296904987e-135!GO:0044422;organelle part;7.74142947831534e-115!GO:0044446;intracellular organelle part;1.56248219487581e-113!GO:0032991;macromolecular complex;1.5445770573292e-81!GO:0030529;ribonucleoprotein complex;3.42763637064623e-73!GO:0044237;cellular metabolic process;7.0665753030284e-72!GO:0044238;primary metabolic process;1.09432708751881e-71!GO:0005515;protein binding;2.17538054584908e-68!GO:0005739;mitochondrion;5.94723633036865e-67!GO:0043170;macromolecule metabolic process;2.28009204407178e-63!GO:0043233;organelle lumen;8.82236058365046e-60!GO:0031974;membrane-enclosed lumen;8.82236058365046e-60!GO:0003723;RNA binding;5.7542380385756e-57!GO:0044428;nuclear part;9.19077948514744e-52!GO:0031090;organelle membrane;2.99610501799111e-51!GO:0005840;ribosome;2.58364833689456e-47!GO:0019538;protein metabolic process;5.82470669083402e-47!GO:0005634;nucleus;1.98238288882569e-46!GO:0044429;mitochondrial part;5.78252363325816e-45!GO:0006412;translation;1.16179850338883e-44!GO:0044260;cellular macromolecule metabolic process;2.06839468590622e-42!GO:0003735;structural constituent of ribosome;1.01502947255671e-41!GO:0009058;biosynthetic process;1.58272490665563e-41!GO:0044267;cellular protein metabolic process;3.45999608132688e-41!GO:0015031;protein transport;6.447244813284e-41!GO:0016043;cellular component organization and biogenesis;8.95836731421005e-41!GO:0033036;macromolecule localization;2.26147423886154e-40!GO:0043234;protein complex;3.5610249922406e-40!GO:0006396;RNA processing;1.26863607930864e-39!GO:0045184;establishment of protein localization;2.48631979454972e-38!GO:0008104;protein localization;9.82281425225202e-38!GO:0044249;cellular biosynthetic process;2.36910606758979e-37!GO:0005829;cytosol;5.38422581289987e-37!GO:0009059;macromolecule biosynthetic process;5.61202674112466e-37!GO:0033279;ribosomal subunit;5.43947652749096e-36!GO:0031967;organelle envelope;5.99322237609133e-36!GO:0031975;envelope;1.25011558023043e-35!GO:0031981;nuclear lumen;2.20468385194245e-32!GO:0016071;mRNA metabolic process;7.46946356228524e-32!GO:0046907;intracellular transport;1.42268674646139e-31!GO:0010467;gene expression;5.14942265878541e-30!GO:0008380;RNA splicing;9.00259651042634e-30!GO:0005740;mitochondrial envelope;5.67342718866754e-29!GO:0043283;biopolymer metabolic process;8.80168973943836e-29!GO:0031966;mitochondrial membrane;9.0420058531309e-28!GO:0006397;mRNA processing;1.7685183835412e-27!GO:0019866;organelle inner membrane;7.85607243707532e-27!GO:0006886;intracellular protein transport;3.63944346460599e-26!GO:0005830;cytosolic ribosome (sensu Eukaryota);4.21999447969052e-26!GO:0005743;mitochondrial inner membrane;1.80892458850123e-25!GO:0065003;macromolecular complex assembly;2.8519547943413e-25!GO:0022613;ribonucleoprotein complex biogenesis and assembly;1.21120626950391e-23!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;3.42901076142092e-23!GO:0006119;oxidative phosphorylation;8.22158394979246e-23!GO:0022607;cellular component assembly;3.75287885648388e-22!GO:0005783;endoplasmic reticulum;4.3631426983675e-21!GO:0005654;nucleoplasm;4.9041059440498e-21!GO:0006996;organelle organization and biogenesis;8.04970308275404e-21!GO:0015934;large ribosomal subunit;3.2517668439644e-20!GO:0044455;mitochondrial membrane part;3.40636271974285e-20!GO:0043228;non-membrane-bound organelle;3.55842164258168e-20!GO:0043232;intracellular non-membrane-bound organelle;3.55842164258168e-20!GO:0044445;cytosolic part;4.04101226040048e-20!GO:0005681;spliceosome;1.56950023109642e-19!GO:0012505;endomembrane system;1.56950023109642e-19!GO:0051649;establishment of cellular localization;2.11038604154897e-19!GO:0051641;cellular localization;2.46412350312031e-19!GO:0031980;mitochondrial lumen;1.06187891758864e-18!GO:0005759;mitochondrial matrix;1.06187891758864e-18!GO:0006457;protein folding;1.16666963378449e-18!GO:0044432;endoplasmic reticulum part;1.97065431783455e-18!GO:0016874;ligase activity;3.02758986941147e-18!GO:0016462;pyrophosphatase activity;1.71723174408917e-17!GO:0044451;nucleoplasm part;1.73747268503361e-17!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;1.84998758320809e-17!GO:0016817;hydrolase activity, acting on acid anhydrides;2.34016192286326e-17!GO:0006512;ubiquitin cycle;2.83735372168655e-17!GO:0017111;nucleoside-triphosphatase activity;6.54335933527433e-17!GO:0015935;small ribosomal subunit;9.41126803216454e-17!GO:0051186;cofactor metabolic process;1.05887187150854e-16!GO:0005746;mitochondrial respiratory chain;1.55538455668348e-16!GO:0005794;Golgi apparatus;1.66456299354752e-16!GO:0048770;pigment granule;1.66456299354752e-16!GO:0042470;melanosome;1.66456299354752e-16!GO:0022618;protein-RNA complex assembly;5.76855179589844e-16!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;8.05853694118637e-16!GO:0044265;cellular macromolecule catabolic process;2.26358539493209e-15!GO:0043285;biopolymer catabolic process;2.51475631339413e-15!GO:0051603;proteolysis involved in cellular protein catabolic process;2.67008880815796e-15!GO:0019941;modification-dependent protein catabolic process;5.48671806004926e-15!GO:0043632;modification-dependent macromolecule catabolic process;5.48671806004926e-15!GO:0044257;cellular protein catabolic process;5.59170030092786e-15!GO:0000166;nucleotide binding;5.76538897919986e-15!GO:0008134;transcription factor binding;5.95371476189753e-15!GO:0006511;ubiquitin-dependent protein catabolic process;6.09850825123333e-15!GO:0050136;NADH dehydrogenase (quinone) activity;6.57635007994348e-15!GO:0003954;NADH dehydrogenase activity;6.57635007994348e-15!GO:0008137;NADH dehydrogenase (ubiquinone) activity;6.57635007994348e-15!GO:0048193;Golgi vesicle transport;6.57635007994348e-15!GO:0008135;translation factor activity, nucleic acid binding;9.30622251569045e-15!GO:0016192;vesicle-mediated transport;1.85065689312209e-14!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);2.23453986501855e-14!GO:0000502;proteasome complex (sensu Eukaryota);2.23453986501855e-14!GO:0009057;macromolecule catabolic process;2.9773877553086e-14!GO:0030163;protein catabolic process;9.13878555503157e-14!GO:0005761;mitochondrial ribosome;9.13878555503157e-14!GO:0000313;organellar ribosome;9.13878555503157e-14!GO:0006259;DNA metabolic process;9.63747658866836e-14!GO:0006605;protein targeting;1.43596774674125e-13!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;1.73233824429713e-13!GO:0044248;cellular catabolic process;2.11522694780258e-13!GO:0042175;nuclear envelope-endoplasmic reticulum network;2.5479721884561e-13!GO:0042775;organelle ATP synthesis coupled electron transport;3.13426681528002e-13!GO:0042773;ATP synthesis coupled electron transport;3.13426681528002e-13!GO:0030964;NADH dehydrogenase complex (quinone);4.99349742831453e-13!GO:0045271;respiratory chain complex I;4.99349742831453e-13!GO:0005747;mitochondrial respiratory chain complex I;4.99349742831453e-13!GO:0006732;coenzyme metabolic process;5.45604297300253e-13!GO:0005789;endoplasmic reticulum membrane;5.7107148589603e-13!GO:0051082;unfolded protein binding;5.94357436930487e-13!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;1.33220758575186e-12!GO:0003676;nucleic acid binding;1.74033942421475e-12!GO:0005730;nucleolus;4.23108973367962e-12!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);9.22133098941561e-12!GO:0009055;electron carrier activity;4.05457341474781e-11!GO:0003743;translation initiation factor activity;5.18290621614442e-11!GO:0016070;RNA metabolic process;5.54177204749782e-11!GO:0019787;small conjugating protein ligase activity;8.50856835790355e-11!GO:0043412;biopolymer modification;1.11034591968995e-10!GO:0008639;small protein conjugating enzyme activity;1.19016219366511e-10!GO:0004842;ubiquitin-protein ligase activity;1.78791004674758e-10!GO:0005793;ER-Golgi intermediate compartment;1.83937980185132e-10!GO:0006413;translational initiation;1.84903806218094e-10!GO:0006446;regulation of translational initiation;2.02465738068132e-10!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;2.09470507793217e-10!GO:0000398;nuclear mRNA splicing, via spliceosome;2.5170229368223e-10!GO:0000375;RNA splicing, via transesterification reactions;2.5170229368223e-10!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;2.5170229368223e-10!GO:0032553;ribonucleotide binding;2.99774871029162e-10!GO:0032555;purine ribonucleotide binding;2.99774871029162e-10!GO:0017076;purine nucleotide binding;3.31109411595274e-10!GO:0003712;transcription cofactor activity;3.77520812318508e-10!GO:0016879;ligase activity, forming carbon-nitrogen bonds;4.64203096522878e-10!GO:0012501;programmed cell death;5.62009055357598e-10!GO:0009259;ribonucleotide metabolic process;1.03198066865457e-09!GO:0006915;apoptosis;1.26791293027959e-09!GO:0006464;protein modification process;1.47572367085531e-09!GO:0009150;purine ribonucleotide metabolic process;2.03113476455279e-09!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;2.37679621760805e-09!GO:0006163;purine nucleotide metabolic process;2.71530801691879e-09!GO:0006913;nucleocytoplasmic transport;2.88361374440356e-09!GO:0016881;acid-amino acid ligase activity;3.50979015218433e-09!GO:0008219;cell death;4.03536823651245e-09!GO:0016265;death;4.03536823651245e-09!GO:0051169;nuclear transport;5.02287829115919e-09!GO:0009199;ribonucleoside triphosphate metabolic process;7.26516253317533e-09!GO:0015986;ATP synthesis coupled proton transport;7.91182051109522e-09!GO:0015985;energy coupled proton transport, down electrochemical gradient;7.91182051109522e-09!GO:0008565;protein transporter activity;8.06429149662899e-09!GO:0015078;hydrogen ion transmembrane transporter activity;1.0417911877042e-08!GO:0019829;cation-transporting ATPase activity;1.12742356287154e-08!GO:0009152;purine ribonucleotide biosynthetic process;1.17867657842402e-08!GO:0042254;ribosome biogenesis and assembly;1.36990724737823e-08!GO:0009141;nucleoside triphosphate metabolic process;1.48133718542126e-08!GO:0009260;ribonucleotide biosynthetic process;1.50190899902411e-08!GO:0016491;oxidoreductase activity;1.50972855227786e-08!GO:0009205;purine ribonucleoside triphosphate metabolic process;1.56366729151123e-08!GO:0009144;purine nucleoside triphosphate metabolic process;1.56366729151123e-08!GO:0006164;purine nucleotide biosynthetic process;1.58353275102347e-08!GO:0031965;nuclear membrane;1.63178818153067e-08!GO:0009056;catabolic process;1.78308418032597e-08!GO:0006399;tRNA metabolic process;1.98486566975007e-08!GO:0007049;cell cycle;2.13346173579288e-08!GO:0009142;nucleoside triphosphate biosynthetic process;2.13346173579288e-08!GO:0009201;ribonucleoside triphosphate biosynthetic process;2.13346173579288e-08!GO:0005635;nuclear envelope;2.68009038889091e-08!GO:0051188;cofactor biosynthetic process;3.08512471336222e-08!GO:0003924;GTPase activity;3.76375408483622e-08!GO:0046034;ATP metabolic process;3.94246056787531e-08!GO:0030120;vesicle coat;4.34173104372315e-08!GO:0030662;coated vesicle membrane;4.34173104372315e-08!GO:0005768;endosome;4.41879300043524e-08!GO:0016604;nuclear body;4.46009463876749e-08!GO:0016887;ATPase activity;4.57745553092151e-08!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;4.8156673417473e-08!GO:0009145;purine nucleoside triphosphate biosynthetic process;4.8156673417473e-08!GO:0006461;protein complex assembly;5.09870982426492e-08!GO:0048523;negative regulation of cellular process;7.40074159424761e-08!GO:0043687;post-translational protein modification;8.67889004960337e-08!GO:0006366;transcription from RNA polymerase II promoter;8.79512733876141e-08!GO:0042623;ATPase activity, coupled;9.0771408571294e-08!GO:0006754;ATP biosynthetic process;9.13391467450235e-08!GO:0006753;nucleoside phosphate metabolic process;9.13391467450235e-08!GO:0016469;proton-transporting two-sector ATPase complex;9.13391467450235e-08!GO:0045333;cellular respiration;9.17822766995448e-08!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;9.91855858197589e-08!GO:0004812;aminoacyl-tRNA ligase activity;9.91855858197589e-08!GO:0016875;ligase activity, forming carbon-oxygen bonds;9.91855858197589e-08!GO:0006888;ER to Golgi vesicle-mediated transport;1.04770519259898e-07!GO:0007005;mitochondrion organization and biogenesis;1.18205705934917e-07!GO:0017038;protein import;1.25731038257544e-07!GO:0009060;aerobic respiration;1.26329405583603e-07!GO:0006325;establishment and/or maintenance of chromatin architecture;1.61866798280108e-07!GO:0044453;nuclear membrane part;2.15997159153068e-07!GO:0005788;endoplasmic reticulum lumen;2.15997159153068e-07!GO:0043038;amino acid activation;2.19997620694152e-07!GO:0006418;tRNA aminoacylation for protein translation;2.19997620694152e-07!GO:0043039;tRNA aminoacylation;2.19997620694152e-07!GO:0044431;Golgi apparatus part;2.38536458190858e-07!GO:0005773;vacuole;2.9135988309775e-07!GO:0048475;coated membrane;3.24838408316312e-07!GO:0030117;membrane coat;3.24838408316312e-07!GO:0005524;ATP binding;3.76286038675715e-07!GO:0006323;DNA packaging;4.53231151388627e-07!GO:0008361;regulation of cell size;6.05019769192484e-07!GO:0015077;monovalent inorganic cation transmembrane transporter activity;6.17182432994248e-07!GO:0051246;regulation of protein metabolic process;6.17182432994248e-07!GO:0032559;adenyl ribonucleotide binding;6.25919555182584e-07!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;6.41824555076931e-07!GO:0030554;adenyl nucleotide binding;8.09986272843213e-07!GO:0016049;cell growth;8.20067891222036e-07!GO:0006974;response to DNA damage stimulus;8.6069983287816e-07!GO:0032446;protein modification by small protein conjugation;8.96500411621463e-07!GO:0030532;small nuclear ribonucleoprotein complex;1.27459675751228e-06!GO:0006752;group transfer coenzyme metabolic process;1.33047771387327e-06!GO:0009108;coenzyme biosynthetic process;1.47344435473769e-06!GO:0016567;protein ubiquitination;1.54771541347343e-06!GO:0016607;nuclear speck;1.56449896168524e-06!GO:0043067;regulation of programmed cell death;1.70512120737402e-06!GO:0000151;ubiquitin ligase complex;1.8043023099393e-06!GO:0048519;negative regulation of biological process;1.82766286687361e-06!GO:0042981;regulation of apoptosis;1.87046398618251e-06!GO:0006091;generation of precursor metabolites and energy;2.21698026688471e-06!GO:0045786;negative regulation of progression through cell cycle;2.22569171305838e-06!GO:0045259;proton-transporting ATP synthase complex;3.31849582641382e-06!GO:0051187;cofactor catabolic process;3.62344933058668e-06!GO:0043069;negative regulation of programmed cell death;3.62927893371118e-06!GO:0044440;endosomal part;4.15957728558205e-06!GO:0010008;endosome membrane;4.15957728558205e-06!GO:0005525;GTP binding;4.9725776294138e-06!GO:0065002;intracellular protein transport across a membrane;4.97616149820798e-06!GO:0008654;phospholipid biosynthetic process;5.45517519344509e-06!GO:0016787;hydrolase activity;5.48092219372146e-06!GO:0005667;transcription factor complex;5.81125957429785e-06!GO:0051276;chromosome organization and biogenesis;5.90065169927629e-06!GO:0005839;proteasome core complex (sensu Eukaryota);6.29213184470268e-06!GO:0043066;negative regulation of apoptosis;6.46803760118852e-06!GO:0009117;nucleotide metabolic process;7.30751830916818e-06!GO:0000323;lytic vacuole;8.54356988054743e-06!GO:0005764;lysosome;8.54356988054743e-06!GO:0016023;cytoplasmic membrane-bound vesicle;9.04509824168642e-06!GO:0015980;energy derivation by oxidation of organic compounds;9.45338895432806e-06!GO:0001558;regulation of cell growth;9.46556907713778e-06!GO:0005770;late endosome;9.56855055677211e-06!GO:0031988;membrane-bound vesicle;9.63484650173485e-06!GO:0005798;Golgi-associated vesicle;1.04190098741242e-05!GO:0006099;tricarboxylic acid cycle;1.08261406922336e-05!GO:0046356;acetyl-CoA catabolic process;1.08261406922336e-05!GO:0005762;mitochondrial large ribosomal subunit;1.14941977431335e-05!GO:0000315;organellar large ribosomal subunit;1.14941977431335e-05!GO:0009109;coenzyme catabolic process;1.16037635349067e-05!GO:0051726;regulation of cell cycle;1.2378360052886e-05!GO:0005643;nuclear pore;1.24285936009679e-05!GO:0016568;chromatin modification;1.26308290852875e-05!GO:0004386;helicase activity;1.33020237798826e-05!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;1.33233786628273e-05!GO:0022402;cell cycle process;1.44129960761264e-05!GO:0000074;regulation of progression through cell cycle;1.44621342241782e-05!GO:0000139;Golgi membrane;1.99652627117654e-05!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;2.11292315335389e-05!GO:0006916;anti-apoptosis;2.21348205783964e-05!GO:0051170;nuclear import;2.2187938155718e-05!GO:0006084;acetyl-CoA metabolic process;2.28897972548655e-05!GO:0006613;cotranslational protein targeting to membrane;2.45144827019217e-05!GO:0008026;ATP-dependent helicase activity;2.50569664755708e-05!GO:0003713;transcription coactivator activity;2.77421354949826e-05!GO:0006606;protein import into nucleus;3.07302541918096e-05!GO:0031982;vesicle;3.27865858123405e-05!GO:0000245;spliceosome assembly;3.73677736400124e-05!GO:0032561;guanyl ribonucleotide binding;3.78633390608601e-05!GO:0019001;guanyl nucleotide binding;3.78633390608601e-05!GO:0031410;cytoplasmic vesicle;3.83918910256469e-05!GO:0003714;transcription corepressor activity;3.86397091895272e-05!GO:0006364;rRNA processing;3.99738262725551e-05!GO:0065004;protein-DNA complex assembly;4.44102998014935e-05!GO:0006281;DNA repair;4.83291322769763e-05!GO:0046930;pore complex;5.12756786403266e-05!GO:0016072;rRNA metabolic process;5.44325155167831e-05!GO:0031252;leading edge;5.55640945616771e-05!GO:0051789;response to protein stimulus;5.75753686925538e-05!GO:0006986;response to unfolded protein;5.75753686925538e-05!GO:0043566;structure-specific DNA binding;6.31738753523483e-05!GO:0045454;cell redox homeostasis;6.38674742145001e-05!GO:0040008;regulation of growth;6.64774617405163e-05!GO:0043623;cellular protein complex assembly;8.07139256266659e-05!GO:0044262;cellular carbohydrate metabolic process;8.15774399398471e-05!GO:0050657;nucleic acid transport;8.26974970553071e-05!GO:0051236;establishment of RNA localization;8.26974970553071e-05!GO:0050658;RNA transport;8.26974970553071e-05!GO:0005905;coated pit;9.80631914262209e-05!GO:0016853;isomerase activity;9.88458144000975e-05!GO:0016740;transferase activity;0.000104643288034224!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.000104643288034224!GO:0015399;primary active transmembrane transporter activity;0.000104643288034224!GO:0006403;RNA localization;0.000111472555332246!GO:0030867;rough endoplasmic reticulum membrane;0.000112043018123187!GO:0030133;transport vesicle;0.000130695916130607!GO:0050794;regulation of cellular process;0.000134691863526072!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;0.000138619015409412!GO:0016564;transcription repressor activity;0.000149419691233485!GO:0004298;threonine endopeptidase activity;0.000153202249788534!GO:0000278;mitotic cell cycle;0.000185574241352966!GO:0003697;single-stranded DNA binding;0.00018888207869163!GO:0043021;ribonucleoprotein binding;0.000191692304327511!GO:0009719;response to endogenous stimulus;0.000206799199550168!GO:0031202;RNA splicing factor activity, transesterification mechanism;0.000232291396791376!GO:0030663;COPI coated vesicle membrane;0.000256532948043677!GO:0030126;COPI vesicle coat;0.000256532948043677!GO:0016044;membrane organization and biogenesis;0.000268217133070023!GO:0016563;transcription activator activity;0.000285075442633067!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.00031418670984597!GO:0033116;ER-Golgi intermediate compartment membrane;0.000314404474725694!GO:0005769;early endosome;0.000330466970926584!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;0.00039752810603965!GO:0015992;proton transport;0.000400648321676825!GO:0000314;organellar small ribosomal subunit;0.000413769950754879!GO:0005763;mitochondrial small ribosomal subunit;0.000413769950754879!GO:0006818;hydrogen transport;0.000421111587248115!GO:0008250;oligosaccharyl transferase complex;0.000447543937589451!GO:0019867;outer membrane;0.00045498285276996!GO:0005581;collagen;0.000481525609468542!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.000481525609468542!GO:0030137;COPI-coated vesicle;0.000507447463355848!GO:0031968;organelle outer membrane;0.000523825768083534!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;0.000533869241078984!GO:0007050;cell cycle arrest;0.000557570750137042!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.000578368598723444!GO:0004576;oligosaccharyl transferase activity;0.000638812170598619!GO:0015630;microtubule cytoskeleton;0.000667405319557171!GO:0005048;signal sequence binding;0.000675997423263766!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.000680473296208004!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.000680473296208004!GO:0006333;chromatin assembly or disassembly;0.000683011083814869!GO:0046474;glycerophospholipid biosynthetic process;0.000693851199750314!GO:0005885;Arp2/3 protein complex;0.000700165619960845!GO:0043492;ATPase activity, coupled to movement of substances;0.000726573137367292!GO:0005852;eukaryotic translation initiation factor 3 complex;0.000728607441502144!GO:0006793;phosphorus metabolic process;0.000734859248347728!GO:0006796;phosphate metabolic process;0.000734859248347728!GO:0005813;centrosome;0.00075405150347835!GO:0006357;regulation of transcription from RNA polymerase II promoter;0.00075405150347835!GO:0003724;RNA helicase activity;0.000769132134578321!GO:0006839;mitochondrial transport;0.000778793357914044!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.00085162131911705!GO:0006891;intra-Golgi vesicle-mediated transport;0.000860072325929939!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.000866853268524765!GO:0022890;inorganic cation transmembrane transporter activity;0.000876451241987472!GO:0051028;mRNA transport;0.000949668738667408!GO:0051427;hormone receptor binding;0.00100904347088433!GO:0016859;cis-trans isomerase activity;0.00102217974137599!GO:0003899;DNA-directed RNA polymerase activity;0.00102542259154977!GO:0003729;mRNA binding;0.00104894003458406!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.00108463226550924!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;0.00109610556365973!GO:0016310;phosphorylation;0.0011335313507514!GO:0006612;protein targeting to membrane;0.00120525405493895!GO:0016126;sterol biosynthetic process;0.00125047219475178!GO:0016281;eukaryotic translation initiation factor 4F complex;0.00133610450533696!GO:0051168;nuclear export;0.00134134226178507!GO:0031324;negative regulation of cellular metabolic process;0.00135446246559559!GO:0031072;heat shock protein binding;0.00138123680609814!GO:0005741;mitochondrial outer membrane;0.00148909576797306!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00157113530259688!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00157113530259688!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00157113530259688!GO:0019843;rRNA binding;0.00159003930130214!GO:0019899;enzyme binding;0.00165051203291036!GO:0051920;peroxiredoxin activity;0.00165824728697966!GO:0016197;endosome transport;0.00172218499355653!GO:0000049;tRNA binding;0.00176650069898839!GO:0018196;peptidyl-asparagine modification;0.00177240940587899!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.00177240940587899!GO:0035257;nuclear hormone receptor binding;0.00182674943801698!GO:0044420;extracellular matrix part;0.00182674943801698!GO:0007249;I-kappaB kinase/NF-kappaB cascade;0.00182674943801698!GO:0006260;DNA replication;0.00184889298454558!GO:0030658;transport vesicle membrane;0.00190130646729011!GO:0006082;organic acid metabolic process;0.0020514048716943!GO:0043681;protein import into mitochondrion;0.00207465420511857!GO:0019752;carboxylic acid metabolic process;0.00209064743731747!GO:0009165;nucleotide biosynthetic process;0.00210157573003717!GO:0051252;regulation of RNA metabolic process;0.00216067053360732!GO:0016779;nucleotidyltransferase activity;0.00216067053360732!GO:0005815;microtubule organizing center;0.00224197437323858!GO:0043488;regulation of mRNA stability;0.00227459446689068!GO:0043487;regulation of RNA stability;0.00227459446689068!GO:0048471;perinuclear region of cytoplasm;0.00247092972610328!GO:0043284;biopolymer biosynthetic process;0.00249357548945559!GO:0030132;clathrin coat of coated pit;0.00250229480093497!GO:0000785;chromatin;0.00259643231840101!GO:0048500;signal recognition particle;0.00263946847285828!GO:0046467;membrane lipid biosynthetic process;0.00289261182286655!GO:0006352;transcription initiation;0.00303228766378522!GO:0005791;rough endoplasmic reticulum;0.00305243419868661!GO:0007006;mitochondrial membrane organization and biogenesis;0.00305872086580005!GO:0003746;translation elongation factor activity;0.00320155558093801!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.00374267776533063!GO:0006414;translational elongation;0.0038632551498633!GO:0017166;vinculin binding;0.00387656450196622!GO:0009892;negative regulation of metabolic process;0.00395461414108787!GO:0008610;lipid biosynthetic process;0.00405475010362582!GO:0050789;regulation of biological process;0.0041060847763159!GO:0051128;regulation of cellular component organization and biogenesis;0.00422012982644091!GO:0043433;negative regulation of transcription factor activity;0.00433839565070999!GO:0030134;ER to Golgi transport vesicle;0.00438928118150672!GO:0030036;actin cytoskeleton organization and biogenesis;0.00440350197457468!GO:0005583;fibrillar collagen;0.00474151121787204!GO:0006509;membrane protein ectodomain proteolysis;0.00482125059777463!GO:0033619;membrane protein proteolysis;0.00482125059777463!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.00486441826359962!GO:0030660;Golgi-associated vesicle membrane;0.00492408770319651!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.00492800576526779!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.00492800576526779!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.0049313230156944!GO:0015002;heme-copper terminal oxidase activity;0.0049313230156944!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.0049313230156944!GO:0004129;cytochrome-c oxidase activity;0.0049313230156944!GO:0006695;cholesterol biosynthetic process;0.00514805402551839!GO:0007040;lysosome organization and biogenesis;0.00546368194454796!GO:0006650;glycerophospholipid metabolic process;0.00561033741693139!GO:0051287;NAD binding;0.00561033741693139!GO:0031543;peptidyl-proline dioxygenase activity;0.0056185451560034!GO:0005774;vacuolar membrane;0.0056185451560034!GO:0051329;interphase of mitotic cell cycle;0.00563220903589007!GO:0046489;phosphoinositide biosynthetic process;0.00567755662529075!GO:0005694;chromosome;0.00571575916502548!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.0057990226552505!GO:0045047;protein targeting to ER;0.0057990226552505!GO:0008092;cytoskeletal protein binding;0.00585537324496867!GO:0031902;late endosome membrane;0.00596901405171888!GO:0016772;transferase activity, transferring phosphorus-containing groups;0.00603865003253189!GO:0006626;protein targeting to mitochondrion;0.00609926474868672!GO:0030127;COPII vesicle coat;0.00641319741515424!GO:0012507;ER to Golgi transport vesicle membrane;0.00641319741515424!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.00648793639170355!GO:0045045;secretory pathway;0.00662438467240825!GO:0006402;mRNA catabolic process;0.00672925757691705!GO:0031625;ubiquitin protein ligase binding;0.0069142091955453!GO:0000059;protein import into nucleus, docking;0.00692967475614137!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.00700353310714141!GO:0000096;sulfur amino acid metabolic process;0.00707018383790566!GO:0008652;amino acid biosynthetic process;0.00715704373867269!GO:0006740;NADPH regeneration;0.00738376555113745!GO:0006098;pentose-phosphate shunt;0.00738376555113745!GO:0003690;double-stranded DNA binding;0.00753482880425833!GO:0017015;regulation of transforming growth factor beta receptor signaling pathway;0.00771602769651582!GO:0006383;transcription from RNA polymerase III promoter;0.00814834164646299!GO:0016408;C-acyltransferase activity;0.00814834164646299!GO:0030118;clathrin coat;0.00814834164646299!GO:0030521;androgen receptor signaling pathway;0.00835043070456783!GO:0008154;actin polymerization and/or depolymerization;0.00853434684658379!GO:0030041;actin filament polymerization;0.00877037534225322!GO:0048522;positive regulation of cellular process;0.00881153264928487!GO:0008033;tRNA processing;0.00887731604782897!GO:0031124;mRNA 3'-end processing;0.008894326172282!GO:0006595;polyamine metabolic process;0.00892885452028928!GO:0016706;oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors;0.00908210084996232!GO:0048487;beta-tubulin binding;0.00908210084996232!GO:0045936;negative regulation of phosphate metabolic process;0.00908850097391811!GO:0065009;regulation of a molecular function;0.00932574393049397!GO:0050662;coenzyme binding;0.00942176860205801!GO:0000082;G1/S transition of mitotic cell cycle;0.00948673356711481!GO:0006892;post-Golgi vesicle-mediated transport;0.00998992534801854!GO:0030659;cytoplasmic vesicle membrane;0.0100260382271493!GO:0008186;RNA-dependent ATPase activity;0.0100794296790821!GO:0019798;procollagen-proline dioxygenase activity;0.0101360157143978!GO:0007033;vacuole organization and biogenesis;0.0101534543721777!GO:0005869;dynactin complex;0.0103683658129704!GO:0030880;RNA polymerase complex;0.0106651831787247!GO:0008287;protein serine/threonine phosphatase complex;0.0110018472211466!GO:0006979;response to oxidative stress;0.0113744749989209!GO:0051325;interphase;0.0116328057710465!GO:0008180;signalosome;0.0116502558710241!GO:0044437;vacuolar part;0.0117997570866139!GO:0030029;actin filament-based process;0.0121872583509654!GO:0046483;heterocycle metabolic process;0.0121942664995212!GO:0006334;nucleosome assembly;0.0123210467915068!GO:0030027;lamellipodium;0.0123421717425052!GO:0006778;porphyrin metabolic process;0.0123421717425052!GO:0033013;tetrapyrrole metabolic process;0.0123421717425052!GO:0031418;L-ascorbic acid binding;0.012689220284253!GO:0043022;ribosome binding;0.0133213851582371!GO:0007034;vacuolar transport;0.0134559440335646!GO:0042802;identical protein binding;0.0140629807146864!GO:0000209;protein polyubiquitination;0.0140951630899201!GO:0030145;manganese ion binding;0.0140951630899201!GO:0051087;chaperone binding;0.0143870419197503!GO:0005684;U2-dependent spliceosome;0.0144892888138426!GO:0016272;prefoldin complex;0.0152993971670455!GO:0006289;nucleotide-excision repair;0.0152993971670455!GO:0033559;unsaturated fatty acid metabolic process;0.0154624824575556!GO:0006636;unsaturated fatty acid biosynthetic process;0.0154624824575556!GO:0048468;cell development;0.0155316169761909!GO:0008312;7S RNA binding;0.0163690258407298!GO:0042168;heme metabolic process;0.0164375431453291!GO:0003711;transcription elongation regulator activity;0.0169167113522835!GO:0016363;nuclear matrix;0.0169415621421049!GO:0006897;endocytosis;0.0169415621421049!GO:0010324;membrane invagination;0.0169415621421049!GO:0006497;protein amino acid lipidation;0.0170135780773881!GO:0007264;small GTPase mediated signal transduction;0.0172574530105343!GO:0042158;lipoprotein biosynthetic process;0.0173110333022298!GO:0006739;NADP metabolic process;0.0174301172768207!GO:0004177;aminopeptidase activity;0.0177152722306619!GO:0016481;negative regulation of transcription;0.018166237235111!GO:0019222;regulation of metabolic process;0.0181771524554431!GO:0008139;nuclear localization sequence binding;0.0182675993101178!GO:0006118;electron transport;0.0182765951064893!GO:0031497;chromatin assembly;0.0184890543540462!GO:0000339;RNA cap binding;0.0188248042255579!GO:0048037;cofactor binding;0.0190174812455712!GO:0016627;oxidoreductase activity, acting on the CH-CH group of donors;0.0190816701269503!GO:0006520;amino acid metabolic process;0.0193062002229043!GO:0050811;GABA receptor binding;0.0194006415596405!GO:0015631;tubulin binding;0.0195759140801498!GO:0006401;RNA catabolic process;0.0195759140801498!GO:0042326;negative regulation of phosphorylation;0.0198257635081161!GO:0030176;integral to endoplasmic reticulum membrane;0.0198370337213922!GO:0005520;insulin-like growth factor binding;0.02002937544369!GO:0031529;ruffle organization and biogenesis;0.0200561213061506!GO:0005586;collagen type III;0.0204380703779231!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.0208773547983672!GO:0000428;DNA-directed RNA polymerase complex;0.0208773547983672!GO:0044433;cytoplasmic vesicle part;0.0215980151605401!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.0219444975359092!GO:0051098;regulation of binding;0.0219444975359092!GO:0000287;magnesium ion binding;0.0221925037317534!GO:0044427;chromosomal part;0.0221925037317534!GO:0035035;histone acetyltransferase binding;0.0223630783341567!GO:0007243;protein kinase cascade;0.0223630783341567!GO:0008632;apoptotic program;0.0224238139247299!GO:0004722;protein serine/threonine phosphatase activity;0.022458659821809!GO:0003756;protein disulfide isomerase activity;0.022458659821809!GO:0016864;intramolecular oxidoreductase activity, transposing S-S bonds;0.022458659821809!GO:0004004;ATP-dependent RNA helicase activity;0.0230139086054486!GO:0051101;regulation of DNA binding;0.0232587001867782!GO:0005765;lysosomal membrane;0.0235165230766888!GO:0030199;collagen fibril organization;0.0235748900101729!GO:0006518;peptide metabolic process;0.0236335090088332!GO:0045893;positive regulation of transcription, DNA-dependent;0.0239465194778226!GO:0030125;clathrin vesicle coat;0.0241251997193541!GO:0030665;clathrin coated vesicle membrane;0.0241251997193541!GO:0007010;cytoskeleton organization and biogenesis;0.0241251997193541!GO:0005862;muscle thin filament tropomyosin;0.0241447267405979!GO:0006611;protein export from nucleus;0.024225909266651!GO:0009081;branched chain family amino acid metabolic process;0.0246020211504795!GO:0051540;metal cluster binding;0.0246020211504795!GO:0051536;iron-sulfur cluster binding;0.0246020211504795!GO:0030836;positive regulation of actin filament depolymerization;0.0246020211504795!GO:0007021;tubulin folding;0.0251857602235649!GO:0033673;negative regulation of kinase activity;0.0251989569650634!GO:0006469;negative regulation of protein kinase activity;0.0251989569650634!GO:0051539;4 iron, 4 sulfur cluster binding;0.0254394808964578!GO:0050681;androgen receptor binding;0.0261356515732794!GO:0003684;damaged DNA binding;0.0267352980670471!GO:0035258;steroid hormone receptor binding;0.0269722319369426!GO:0005996;monosaccharide metabolic process;0.0276537994788518!GO:0030503;regulation of cell redox homeostasis;0.0277986284132786!GO:0044452;nucleolar part;0.0282978495782754!GO:0030119;AP-type membrane coat adaptor complex;0.0282978495782754!GO:0030508;thiol-disulfide exchange intermediate activity;0.0284819185248046!GO:0005832;chaperonin-containing T-complex;0.0289455795870878!GO:0005100;Rho GTPase activator activity;0.0289559708665185!GO:0030384;phosphoinositide metabolic process;0.0293646309278843!GO:0045941;positive regulation of transcription;0.0295962516633612!GO:0030032;lamellipodium biogenesis;0.0296504377273572!GO:0030865;cortical cytoskeleton organization and biogenesis;0.0296599959806727!GO:0007041;lysosomal transport;0.0297330148274449!GO:0007179;transforming growth factor beta receptor signaling pathway;0.0299349342120719!GO:0051348;negative regulation of transferase activity;0.0302890919184091!GO:0030833;regulation of actin filament polymerization;0.0308750754557955!GO:0031901;early endosome membrane;0.0308750754557955!GO:0019318;hexose metabolic process;0.0309224907727271!GO:0051059;NF-kappaB binding;0.0311887116861747!GO:0005669;transcription factor TFIID complex;0.0313729260486032!GO:0001726;ruffle;0.0315175936063552!GO:0009225;nucleotide-sugar metabolic process;0.03232613021201!GO:0006354;RNA elongation;0.0323734799453808!GO:0045935;positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.0326244463906376!GO:0005637;nuclear inner membrane;0.0328162346430563!GO:0031461;cullin-RING ubiquitin ligase complex;0.0329050192068875!GO:0031123;RNA 3'-end processing;0.0332808557238794!GO:0016251;general RNA polymerase II transcription factor activity;0.0337544083973772!GO:0046519;sphingoid metabolic process;0.0342766503258755!GO:0016125;sterol metabolic process;0.0342766503258755!GO:0032981;mitochondrial respiratory chain complex I assembly;0.0344609584765574!GO:0010257;NADH dehydrogenase complex assembly;0.0344609584765574!GO:0033108;mitochondrial respiratory chain complex assembly;0.0344609584765574!GO:0032940;secretion by cell;0.0356234743136555!GO:0008022;protein C-terminus binding;0.0360418898830058!GO:0004860;protein kinase inhibitor activity;0.0361495490501273!GO:0006506;GPI anchor biosynthetic process;0.0364335921585522!GO:0016741;transferase activity, transferring one-carbon groups;0.0371595242102626!GO:0012506;vesicle membrane;0.0373410030568259!GO:0006007;glucose catabolic process;0.037436287123591!GO:0045792;negative regulation of cell size;0.0377937887262337!GO:0003923;GPI-anchor transamidase activity;0.0383796638412609!GO:0016255;attachment of GPI anchor to protein;0.0383796638412609!GO:0042765;GPI-anchor transamidase complex;0.0383796638412609!GO:0030308;negative regulation of cell growth;0.0383919834466718!GO:0005975;carbohydrate metabolic process;0.0387900265089918!GO:0006779;porphyrin biosynthetic process;0.0389668496897365!GO:0033014;tetrapyrrole biosynthetic process;0.0389668496897365!GO:0008168;methyltransferase activity;0.0389811054098984!GO:0007004;telomere maintenance via telomerase;0.039525910944822!GO:0016407;acetyltransferase activity;0.0395518234615359!GO:0000097;sulfur amino acid biosynthetic process;0.040015305102987!GO:0005588;collagen type V;0.040601288293181!GO:0032906;transforming growth factor-beta2 production;0.0415900992309892!GO:0032909;regulation of transforming growth factor-beta2 production;0.0415900992309892!GO:0031589;cell-substrate adhesion;0.0416376375834455!GO:0007160;cell-matrix adhesion;0.0418378965398241!GO:0022408;negative regulation of cell-cell adhesion;0.0423213477234997!GO:0019205;nucleobase, nucleoside, nucleotide kinase activity;0.0435145695981385!GO:0017134;fibroblast growth factor binding;0.0435145695981385!GO:0022415;viral reproductive process;0.0442210273973576!GO:0030131;clathrin adaptor complex;0.0443112564683057!GO:0006376;mRNA splice site selection;0.0443370131989487!GO:0000389;nuclear mRNA 3'-splice site recognition;0.0443370131989487!GO:0048146;positive regulation of fibroblast proliferation;0.0444054435330466!GO:0006378;mRNA polyadenylation;0.0444054435330466!GO:0006066;alcohol metabolic process;0.0450016347465334!GO:0043065;positive regulation of apoptosis;0.0458937165720689!GO:0045806;negative regulation of endocytosis;0.0464333208625608!GO:0008064;regulation of actin polymerization and/or depolymerization;0.046858955736148!GO:0016667;oxidoreductase activity, acting on sulfur group of donors;0.0476115221805828!GO:0006914;autophagy;0.0483568297240042!GO:0005850;eukaryotic translation initiation factor 2 complex;0.0486476824499534!GO:0006505;GPI anchor metabolic process;0.0486735846391705!GO:0005665;DNA-directed RNA polymerase II, core complex;0.0488145246110812!GO:0009967;positive regulation of signal transduction;0.0490267917355144!GO:0048144;fibroblast proliferation;0.0490267917355144!GO:0048145;regulation of fibroblast proliferation;0.0490267917355144!GO:0006672;ceramide metabolic process;0.0498525117157412 | |||
|sample_id=11629 | |sample_id=11629 | ||
|sample_note= | |sample_note= | ||
| Line 76: | Line 105: | ||
|sample_tissue=umbilical cord | |sample_tissue=umbilical cord | ||
|top_motifs=GLI1..3:1.77150357484;TAL1_TCF{3,4,12}:1.71008489742;NR3C1:1.64196647181;IKZF1:1.49272813193;EVI1:1.44640478685;NKX3-1:1.34523445997;PPARG:1.33285650589;ZNF423:1.31598869381;HMX1:1.28688851508;ESR1:1.17633516542;ZIC1..3:1.10849651318;SMAD1..7,9:1.0414307567;HMGA1,2:1.03483651426;ONECUT1,2:1.02251184649;MAFB:0.994017294396;UFEwm:0.990819781671;TFAP4:0.978090333575;EBF1:0.885816012168;TEAD1:0.880632279778;RXRA_VDR{dimer}:0.871984776029;NFIX:0.869814225215;SREBF1,2:0.864627460945;ZBTB6:0.846421884832;LHX3,4:0.835451916607;NFE2L1:0.8013033483;ALX4:0.778265684799;HOX{A4,D4}:0.733426760845;GTF2I:0.727066429842;KLF4:0.715304305137;NR6A1:0.660365441029;EN1,2:0.655024402606;GFI1B:0.640963734275;SRF:0.636655237986;GTF2A1,2:0.628706907776;HAND1,2:0.610108692944;TBX4,5:0.592963931265;AIRE:0.586999595483;SPZ1:0.581805475366;TLX1..3_NFIC{dimer}:0.576731922381;MYBL2:0.54004204073;MAZ:0.534150244472;TFCP2:0.489607231253;ZNF384:0.489186941152;HOX{A5,B5}:0.486722006492;HLF:0.485369923937;PRDM1:0.484079832799;TP53:0.469596480964;FOXA2:0.466001380795;bHLH_family:0.443072406148;VSX1,2:0.442593952895;MZF1:0.429513764685;BPTF:0.420793383274;PATZ1:0.420504521135;GZF1:0.418590097328;TOPORS:0.415638294392;XBP1:0.403177763248;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.384624499807;RXR{A,B,G}:0.382897577454;NANOG{mouse}:0.376672043992;HIF1A:0.373797072583;TFAP2{A,C}:0.372319849507;ZNF238:0.367385210551;NKX2-1,4:0.336681636582;FOX{F1,F2,J1}:0.316459312781;GATA4:0.315848558975;RREB1:0.312909454712;SOX17:0.311421831769;NFE2L2:0.310679285884;TEF:0.306878148975;ARID5B:0.29982914014;FOXL1:0.298392551245;ZNF148:0.29471872478;DBP:0.267974448437;AHR_ARNT_ARNT2:0.266717399286;PDX1:0.221054759753;ESRRA:0.14710958284;NFATC1..3:0.146102803532;MTE{core}:0.121107690693;HIC1:0.114965872595;ATF4:0.0977136363018;RBPJ:0.0935580816525;MEF2{A,B,C,D}:0.0891353095263;LMO2:0.0862189506234;CDX1,2,4:0.0441760798462;ATF6:0.0301304568343;NKX2-2,8:0.029402917129;FOXO1,3,4:0.0239533396739;XCPE1{core}:0.0158546263995;NR5A1,2:0.00889624476662;PAX3,7:-0.00763929796297;TFAP2B:-0.0143473806864;SP1:-0.0162650271092;SOX2:-0.0226883517147;ZFP161:-0.0239209711654;LEF1_TCF7_TCF7L1,2:-0.0386213253412;HNF1A:-0.0659882913428;STAT2,4,6:-0.0845169155524;ZBTB16:-0.0953691960632;NHLH1,2:-0.103416089274;NRF1:-0.109157482534;RFX1:-0.110362388018;EP300:-0.113438995152;BACH2:-0.115120669012;REST:-0.122482176034;STAT1,3:-0.14492890301;NKX3-2:-0.146848066158;POU5F1:-0.147425906194;MYFfamily:-0.1498280153;PAX5:-0.155688666565;CREB1:-0.160625139123;FOSL2:-0.164927590627;HNF4A_NR2F1,2:-0.170845657175;POU3F1..4:-0.174988135343;SNAI1..3:-0.187155532119;ZNF143:-0.210587830462;MTF1:-0.21101893813;HES1:-0.212651563326;YY1:-0.215819563907;NR1H4:-0.222698981478;PAX6:-0.243326970161;CRX:-0.248192961596;HSF1,2:-0.254148045052;FOXP3:-0.258731053938;MED-1{core}:-0.259516628878;IKZF2:-0.259925388519;FOS_FOS{B,L1}_JUN{B,D}:-0.260205815068;GATA6:-0.269460634064;PAX4:-0.276631404544;CEBPA,B_DDIT3:-0.282454182336;FOXM1:-0.291506909858;NFKB1_REL_RELA:-0.318481454746;IRF1,2:-0.341317713128;GFI1:-0.341559554753;FOXQ1:-0.347051597103;STAT5{A,B}:-0.353498732309;ELK1,4_GABP{A,B1}:-0.37161342964;PAX1,9:-0.393343067841;NFE2:-0.394031076319;AR:-0.406641741369;ALX1:-0.412402849274;PAX2:-0.427172868885;NKX6-1,2:-0.442647148651;DMAP1_NCOR{1,2}_SMARC:-0.464645008653;FOX{D1,D2}:-0.47160303948;MYB:-0.475753471442;SOX{8,9,10}:-0.481231221015;PRRX1,2:-0.487204504963;EGR1..3:-0.526107005666;PAX8:-0.541342572345;RUNX1..3:-0.543297326486;RFX2..5_RFXANK_RFXAP:-0.551726456439;TBP:-0.554292480026;OCT4_SOX2{dimer}:-0.565027496396;ATF5_CREB3:-0.57087732225;MYOD1:-0.598543943178;GCM1,2:-0.617141595579;TGIF1:-0.628262481522;ATF2:-0.639869236892;SOX5:-0.641174759707;CUX2:-0.665976398229;SPI1:-0.670299401125;ETS1,2:-0.684240173144;CDC5L:-0.699168025964;IRF7:-0.71235251443;ZEB1:-0.732520846873;ADNP_IRX_SIX_ZHX:-0.739690132267;NKX2-3_NKX2-5:-0.758415274472;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.770480238856;NANOG:-0.793792948584;SPIB:-0.798090380787;FOXN1:-0.798106464984;JUN:-0.802523661706;FOXP1:-0.808418468319;POU6F1:-0.823450476505;TFDP1:-0.827380136348;PITX1..3:-0.889486369912;HOX{A6,A7,B6,B7}:-0.896407173297;T:-0.950572340734;FOXD3:-0.952092500277;E2F1..5:-0.971388616599;BREu{core}:-0.973193901514;POU2F1..3:-1.02830065159;ELF1,2,4:-1.06445496712;HOXA9_MEIS1:-1.06676135329;NFY{A,B,C}:-1.07049382955;NFIL3:-1.11666372112;POU1F1:-1.23813289173;HBP1_HMGB_SSRP1_UBTF:-1.28408738574;RORA:-1.38723914242;FOX{I1,J2}:-1.85082429651;PBX1:-1.96169423944;TLX2:-2.18683699195 | |top_motifs=GLI1..3:1.77150357484;TAL1_TCF{3,4,12}:1.71008489742;NR3C1:1.64196647181;IKZF1:1.49272813193;EVI1:1.44640478685;NKX3-1:1.34523445997;PPARG:1.33285650589;ZNF423:1.31598869381;HMX1:1.28688851508;ESR1:1.17633516542;ZIC1..3:1.10849651318;SMAD1..7,9:1.0414307567;HMGA1,2:1.03483651426;ONECUT1,2:1.02251184649;MAFB:0.994017294396;UFEwm:0.990819781671;TFAP4:0.978090333575;EBF1:0.885816012168;TEAD1:0.880632279778;RXRA_VDR{dimer}:0.871984776029;NFIX:0.869814225215;SREBF1,2:0.864627460945;ZBTB6:0.846421884832;LHX3,4:0.835451916607;NFE2L1:0.8013033483;ALX4:0.778265684799;HOX{A4,D4}:0.733426760845;GTF2I:0.727066429842;KLF4:0.715304305137;NR6A1:0.660365441029;EN1,2:0.655024402606;GFI1B:0.640963734275;SRF:0.636655237986;GTF2A1,2:0.628706907776;HAND1,2:0.610108692944;TBX4,5:0.592963931265;AIRE:0.586999595483;SPZ1:0.581805475366;TLX1..3_NFIC{dimer}:0.576731922381;MYBL2:0.54004204073;MAZ:0.534150244472;TFCP2:0.489607231253;ZNF384:0.489186941152;HOX{A5,B5}:0.486722006492;HLF:0.485369923937;PRDM1:0.484079832799;TP53:0.469596480964;FOXA2:0.466001380795;bHLH_family:0.443072406148;VSX1,2:0.442593952895;MZF1:0.429513764685;BPTF:0.420793383274;PATZ1:0.420504521135;GZF1:0.418590097328;TOPORS:0.415638294392;XBP1:0.403177763248;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.384624499807;RXR{A,B,G}:0.382897577454;NANOG{mouse}:0.376672043992;HIF1A:0.373797072583;TFAP2{A,C}:0.372319849507;ZNF238:0.367385210551;NKX2-1,4:0.336681636582;FOX{F1,F2,J1}:0.316459312781;GATA4:0.315848558975;RREB1:0.312909454712;SOX17:0.311421831769;NFE2L2:0.310679285884;TEF:0.306878148975;ARID5B:0.29982914014;FOXL1:0.298392551245;ZNF148:0.29471872478;DBP:0.267974448437;AHR_ARNT_ARNT2:0.266717399286;PDX1:0.221054759753;ESRRA:0.14710958284;NFATC1..3:0.146102803532;MTE{core}:0.121107690693;HIC1:0.114965872595;ATF4:0.0977136363018;RBPJ:0.0935580816525;MEF2{A,B,C,D}:0.0891353095263;LMO2:0.0862189506234;CDX1,2,4:0.0441760798462;ATF6:0.0301304568343;NKX2-2,8:0.029402917129;FOXO1,3,4:0.0239533396739;XCPE1{core}:0.0158546263995;NR5A1,2:0.00889624476662;PAX3,7:-0.00763929796297;TFAP2B:-0.0143473806864;SP1:-0.0162650271092;SOX2:-0.0226883517147;ZFP161:-0.0239209711654;LEF1_TCF7_TCF7L1,2:-0.0386213253412;HNF1A:-0.0659882913428;STAT2,4,6:-0.0845169155524;ZBTB16:-0.0953691960632;NHLH1,2:-0.103416089274;NRF1:-0.109157482534;RFX1:-0.110362388018;EP300:-0.113438995152;BACH2:-0.115120669012;REST:-0.122482176034;STAT1,3:-0.14492890301;NKX3-2:-0.146848066158;POU5F1:-0.147425906194;MYFfamily:-0.1498280153;PAX5:-0.155688666565;CREB1:-0.160625139123;FOSL2:-0.164927590627;HNF4A_NR2F1,2:-0.170845657175;POU3F1..4:-0.174988135343;SNAI1..3:-0.187155532119;ZNF143:-0.210587830462;MTF1:-0.21101893813;HES1:-0.212651563326;YY1:-0.215819563907;NR1H4:-0.222698981478;PAX6:-0.243326970161;CRX:-0.248192961596;HSF1,2:-0.254148045052;FOXP3:-0.258731053938;MED-1{core}:-0.259516628878;IKZF2:-0.259925388519;FOS_FOS{B,L1}_JUN{B,D}:-0.260205815068;GATA6:-0.269460634064;PAX4:-0.276631404544;CEBPA,B_DDIT3:-0.282454182336;FOXM1:-0.291506909858;NFKB1_REL_RELA:-0.318481454746;IRF1,2:-0.341317713128;GFI1:-0.341559554753;FOXQ1:-0.347051597103;STAT5{A,B}:-0.353498732309;ELK1,4_GABP{A,B1}:-0.37161342964;PAX1,9:-0.393343067841;NFE2:-0.394031076319;AR:-0.406641741369;ALX1:-0.412402849274;PAX2:-0.427172868885;NKX6-1,2:-0.442647148651;DMAP1_NCOR{1,2}_SMARC:-0.464645008653;FOX{D1,D2}:-0.47160303948;MYB:-0.475753471442;SOX{8,9,10}:-0.481231221015;PRRX1,2:-0.487204504963;EGR1..3:-0.526107005666;PAX8:-0.541342572345;RUNX1..3:-0.543297326486;RFX2..5_RFXANK_RFXAP:-0.551726456439;TBP:-0.554292480026;OCT4_SOX2{dimer}:-0.565027496396;ATF5_CREB3:-0.57087732225;MYOD1:-0.598543943178;GCM1,2:-0.617141595579;TGIF1:-0.628262481522;ATF2:-0.639869236892;SOX5:-0.641174759707;CUX2:-0.665976398229;SPI1:-0.670299401125;ETS1,2:-0.684240173144;CDC5L:-0.699168025964;IRF7:-0.71235251443;ZEB1:-0.732520846873;ADNP_IRX_SIX_ZHX:-0.739690132267;NKX2-3_NKX2-5:-0.758415274472;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.770480238856;NANOG:-0.793792948584;SPIB:-0.798090380787;FOXN1:-0.798106464984;JUN:-0.802523661706;FOXP1:-0.808418468319;POU6F1:-0.823450476505;TFDP1:-0.827380136348;PITX1..3:-0.889486369912;HOX{A6,A7,B6,B7}:-0.896407173297;T:-0.950572340734;FOXD3:-0.952092500277;E2F1..5:-0.971388616599;BREu{core}:-0.973193901514;POU2F1..3:-1.02830065159;ELF1,2,4:-1.06445496712;HOXA9_MEIS1:-1.06676135329;NFY{A,B,C}:-1.07049382955;NFIL3:-1.11666372112;POU1F1:-1.23813289173;HBP1_HMGB_SSRP1_UBTF:-1.28408738574;RORA:-1.38723914242;FOX{I1,J2}:-1.85082429651;PBX1:-1.96169423944;TLX2:-2.18683699195 | ||
|xref= | |||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11629-122B9;search_select_hide=table117:FF:11629-122B9 | |||
}} | }} | ||
Latest revision as of 18:12, 4 June 2020
| Name: | Multipotent Cord Blood Unrestricted Somatic Stem Cells, donor2 |
|---|---|
| Species: | Human (Homo sapiens) |
| Library ID: | CNhs12105 |
| Sample type: | primary cells |
| Genomic View: | UCSC |
| RefEX: | Specific genes |
| FANTOM CAT: | 1, 2, 3, 4 |
| CAGEd-oPOSSUM: | link |
| ZENBU report : | link |
| Additional information | ||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Sample information
RNA information
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| CAGE Accession numbers | ||||||||||||||||||||||||||||||||||||||||||||||
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| Download raw sequence, BAM & CTSS | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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| RNA-Seq Accession numbers | ||||||||||||||||||||||||||||||||
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs12105
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs12105
| Novel motif | Logo | P-value |
|---|---|---|
| 1 | 1 | 0.588 |
| 10 | 10 | 0.644 |
| 100 | 100 | 0.793 |
| 101 | 101 | 0.459 |
| 102 | 102 | 0.112 |
| 103 | 103 | 0.309 |
| 104 | 104 | 0.923 |
| 105 | 105 | 0.889 |
| 106 | 106 | 0.361 |
| 107 | 107 | 0.164 |
| 108 | 108 | 0.413 |
| 109 | 109 | 0.597 |
| 11 | 11 | 0.127 |
| 110 | 110 | 0.351 |
| 111 | 111 | 0.414 |
| 112 | 112 | 0.596 |
| 113 | 113 | 0.00654 |
| 114 | 114 | 0.202 |
| 115 | 115 | 0.268 |
| 116 | 116 | 0.316 |
| 117 | 117 | 0.935 |
| 118 | 118 | 0.868 |
| 119 | 119 | 0.505 |
| 12 | 12 | 0.196 |
| 120 | 120 | 0.394 |
| 121 | 121 | 0.73 |
| 122 | 122 | 0.363 |
| 123 | 123 | 0.00906 |
| 124 | 124 | 0.736 |
| 125 | 125 | 0.691 |
| 126 | 126 | 0.812 |
| 127 | 127 | 0.524 |
| 128 | 128 | 0.499 |
| 129 | 129 | 0.747 |
| 13 | 13 | 0.864 |
| 130 | 130 | 0.294 |
| 131 | 131 | 0.345 |
| 132 | 132 | 0.142 |
| 133 | 133 | 0.683 |
| 134 | 134 | 0.129 |
| 135 | 135 | 0.824 |
| 136 | 136 | 0.773 |
| 137 | 137 | 0.399 |
| 138 | 138 | 0.285 |
| 139 | 139 | 0.038 |
| 14 | 14 | 0.955 |
| 140 | 140 | 0.235 |
| 141 | 141 | 0.729 |
| 142 | 142 | 0.589 |
| 143 | 143 | 0.988 |
| 144 | 144 | 0.46 |
| 145 | 145 | 0.978 |
| 146 | 146 | 0.955 |
| 147 | 147 | 0.68 |
| 148 | 148 | 0.958 |
| 149 | 149 | 0.0062 |
| 15 | 15 | 0.907 |
| 150 | 150 | 0.98 |
| 151 | 151 | 0.816 |
| 152 | 152 | 0.272 |
| 153 | 153 | 0.277 |
| 154 | 154 | 0.565 |
| 155 | 155 | 0.502 |
| 156 | 156 | 0.535 |
| 157 | 157 | 0.912 |
| 158 | 158 | 0.0586 |
| 159 | 159 | 0.526 |
| 16 | 16 | 0.0084 |
| 160 | 160 | 0.222 |
| 161 | 161 | 0.0988 |
| 162 | 162 | 0.883 |
| 163 | 163 | 0.636 |
| 164 | 164 | 0.249 |
| 165 | 165 | 0.734 |
| 166 | 166 | 0.0423 |
| 167 | 167 | 0.901 |
| 168 | 168 | 0.173 |
| 169 | 169 | 0.00848 |
| 17 | 17 | 0.535 |
| 18 | 18 | 0.0379 |
| 19 | 19 | 0.0824 |
| 2 | 2 | 0.527 |
| 20 | 20 | 0.875 |
| 21 | 21 | 0.177 |
| 22 | 22 | 0.0373 |
| 23 | 23 | 0.0133 |
| 24 | 24 | 0.273 |
| 25 | 25 | 0.808 |
| 26 | 26 | 0.382 |
| 27 | 27 | 0.18 |
| 28 | 28 | 0.439 |
| 29 | 29 | 0.177 |
| 3 | 3 | 0.446 |
| 30 | 30 | 0.142 |
| 31 | 31 | 0.12 |
| 32 | 32 | 1.77983e-18 |
| 33 | 33 | 0.912 |
| 34 | 34 | 0.786 |
| 35 | 35 | 0.739 |
| 36 | 36 | 0.236 |
| 37 | 37 | 0.117 |
| 38 | 38 | 0.955 |
| 39 | 39 | 0.574 |
| 4 | 4 | 0.789 |
| 40 | 40 | 0.983 |
| 41 | 41 | 0.545 |
| 42 | 42 | 0.648 |
| 43 | 43 | 0.195 |
| 44 | 44 | 0.198 |
| 45 | 45 | 0.54 |
| 46 | 46 | 0.151 |
| 47 | 47 | 0.599 |
| 48 | 48 | 0.4 |
| 49 | 49 | 0.471 |
| 5 | 5 | 0.396 |
| 50 | 50 | 0.986 |
| 51 | 51 | 0.828 |
| 52 | 52 | 0.474 |
| 53 | 53 | 0.143 |
| 54 | 54 | 0.159 |
| 55 | 55 | 0.233 |
| 56 | 56 | 0.771 |
| 57 | 57 | 0.244 |
| 58 | 58 | 0.817 |
| 59 | 59 | 0.00775 |
| 6 | 6 | 0.956 |
| 60 | 60 | 0.823 |
| 61 | 61 | 0.988 |
| 62 | 62 | 0.282 |
| 63 | 63 | 0.452 |
| 64 | 64 | 0.503 |
| 65 | 65 | 0.0624 |
| 66 | 66 | 0.72 |
| 67 | 67 | 0.334 |
| 68 | 68 | 0.274 |
| 69 | 69 | 0.276 |
| 7 | 7 | 0.875 |
| 70 | 70 | 0.0422 |
| 71 | 71 | 0.228 |
| 72 | 72 | 0.785 |
| 73 | 73 | 0.502 |
| 74 | 74 | 0.367 |
| 75 | 75 | 0.262 |
| 76 | 76 | 0.468 |
| 77 | 77 | 0.0328 |
| 78 | 78 | 0.696 |
| 79 | 79 | 0.0155 |
| 8 | 8 | 0.0939 |
| 80 | 80 | 0.969 |
| 81 | 81 | 0.597 |
| 82 | 82 | 0.0786 |
| 83 | 83 | 0.0393 |
| 84 | 84 | 0.46 |
| 85 | 85 | 0.156 |
| 86 | 86 | 0.817 |
| 87 | 87 | 0.347 |
| 88 | 88 | 0.254 |
| 89 | 89 | 0.161 |
| 9 | 9 | 0.769 |
| 90 | 90 | 0.297 |
| 91 | 91 | 0.0336 |
| 92 | 92 | 0.068 |
| 93 | 93 | 0.153 |
| 94 | 94 | 0.45 |
| 95 | 95 | 0.905 |
| 96 | 96 | 0.397 |
| 97 | 97 | 0.371 |
| 98 | 98 | 0.802 |
| 99 | 99 | 0.326 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs12105
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
EFO:0002091 biological replicate
FF:0000117 human mesenchymal stem cell of umbilical cord blood sample
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000723 (somatic stem cell)
0000048 (multi fate stem cell)
0000988 (hematopoietic cell)
0000548 (animal cell)
0002320 (connective tissue cell)
0002371 (somatic cell)
0000081 (blood cell)
0000219 (motile cell)
0000134 (mesenchymal cell)
0000349 (extraembryonic cell)
0000255 (eukaryotic cell)
0000034 (stem cell)
0002569 (mesenchymal stem cell of umbilical cord)
UBERON: Anatomy
0002331 (umbilical cord)
0002384 (connective tissue)
0000479 (tissue)
0004120 (mesoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000481 (multi-tissue structure)
0001062 (anatomical entity)
0000478 (extraembryonic structure)
0003104 (mesenchyme)
0010317 (germ layer / neural crest derived structure)
0003422 (mesenchyme of umbilical cord)
0009142 (entire embryonic mesenchyme)
FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000117 (human mesenchymal stem cell of umbilical cord blood sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000134 (mesenchymal cell)
