FF:11647-122D9: Difference between revisions

Latest revision as of 18:13, 4 June 2020

Name:	Mouse Neurons - cortical, donor3
Species:	Mouse (Mus musculus)
Library ID:	CNhs12112
Sample type:	primary cells
Genomic View:	UCSC
CAGEd-oPOSSUM:	link
ZENBU report :	link

Additional information

Sample information

strain	NA
tissue	cortex
dev stage	NA
sex	NA
age	NA
cell type	neuron
cell line	NA
company	Sciencell/3H
collaboration	FANTOM5 OSC CORE (contact: Al Forrest)
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	RNAMNC1
catalog number	custom
sample type	total RNA
extraction protocol (Details)	OP-RNA-extraction-totalRNA-TRIzol-ethanol-v1.0

CAGE Accession numbers

Method		Sample accession id
CAGE		SAMD00004767

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs12112		CAGE		DRX008833		DRR009705

Accession ID Mm9

Library id		BAM		CTSS
CNhs12112		DRZ001130		DRZ002515

Accession ID Mm10

Library id		BAM		CTSS
CNhs12112		DRZ012480		DRZ013865

Download raw sequence, BAM & CTSS

Mm9

Fasta	BAM	CTSS
download	download	donwload

Mm10

BAM	CTSS
download	donwload

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

CNhs12112

0	0
1	0.185
10	0
100	0.734
1000	0
1001	-0.0749
1002	0.424
1003	0.514
1004	0.0415
1005	-0.283
1006	0.0684
1007	-0.00142
1008	0
1009	-0.19
101	-0.0884
1010	0
1011	0.235
1012	0
1013	-0.217
1014	0.0829
1015	0.396
1016	0.215
1017	0
1018	0
1019	0
102	0
1020	0.461
1021	0.152
1022	-0.124
1023	0
1024	-0.14
1025	0.0517
1026	0
1027	0.413
1028	0
1029	-0.0989
103	-0.0787
1030	0
1031	-0.415
1032	-0.184
1033	-0.00479
1034	0
1035	0
1036	-0.13
1037	0
1038	0.073
1039	-0.244
104	0
1040	-0.155
1041	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs12112

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	0.00327
MA0003.1	MA0003.1	0.105
MA0004.1	MA0004.1	0.905
MA0006.1	MA0006.1	0.104
MA0007.1	MA0007.1	0.338
MA0009.1	MA0009.1	0.586
MA0014.1	MA0014.1	0.389
MA0017.1	MA0017.1	1.40466e-5
MA0018.2	MA0018.2	0.0335
MA0019.1	MA0019.1	0.301
MA0024.1	MA0024.1	0.0804
MA0025.1	MA0025.1	0.233
MA0027.1	MA0027.1	0.796
MA0028.1	MA0028.1	0.993
MA0029.1	MA0029.1	0.389
MA0030.1	MA0030.1	0.613
MA0031.1	MA0031.1	0.115
MA0035.2	MA0035.2	0.0654
MA0038.1	MA0038.1	0.127
MA0039.2	MA0039.2	0.00781
MA0040.1	MA0040.1	0.817
MA0041.1	MA0041.1	0.369
MA0042.1	MA0042.1	0.927
MA0043.1	MA0043.1	0.0326
MA0046.1	MA0046.1	6.28547e-12
MA0047.2	MA0047.2	5.06443e-4
MA0048.1	MA0048.1	0.933
MA0050.1	MA0050.1	1.38617e-9
MA0051.1	MA0051.1	4.87098e-4
MA0052.1	MA0052.1	3.66777e-4
MA0055.1	MA0055.1	0.723
MA0057.1	MA0057.1	0.0777
MA0058.1	MA0058.1	0.729
MA0059.1	MA0059.1	0.889
MA0060.1	MA0060.1	3.69902e-6
MA0061.1	MA0061.1	0.0574
MA0062.2	MA0062.2	0.544
MA0065.2	MA0065.2	2.52739e-5
MA0066.1	MA0066.1	0.216
MA0067.1	MA0067.1	0.942
MA0068.1	MA0068.1	0.135
MA0069.1	MA0069.1	0.048
MA0070.1	MA0070.1	0.413
MA0071.1	MA0071.1	0.241
MA0072.1	MA0072.1	0.116
MA0073.1	MA0073.1	0.849
MA0074.1	MA0074.1	0.368
MA0076.1	MA0076.1	0.396
MA0077.1	MA0077.1	6.53206e-4
MA0078.1	MA0078.1	0.00313
MA0079.2	MA0079.2	0.853
MA0080.2	MA0080.2	2.49737e-10
MA0081.1	MA0081.1	0.465
MA0083.1	MA0083.1	4.78437e-6
MA0084.1	MA0084.1	0.563
MA0087.1	MA0087.1	0.459
MA0088.1	MA0088.1	0.31
MA0090.1	MA0090.1	0.0227
MA0091.1	MA0091.1	0.48
MA0092.1	MA0092.1	0.29
MA0093.1	MA0093.1	0.867
MA0099.2	MA0099.2	2.78736e-5
MA0100.1	MA0100.1	0.64
MA0101.1	MA0101.1	0.19
MA0102.2	MA0102.2	0.857
MA0103.1	MA0103.1	0.0498
MA0104.2	MA0104.2	0.424
MA0105.1	MA0105.1	0.0548
MA0106.1	MA0106.1	0.171
MA0107.1	MA0107.1	0.059
MA0108.2	MA0108.2	0.00167
MA0111.1	MA0111.1	0.763
MA0112.2	MA0112.2	2.80417e-4
MA0113.1	MA0113.1	0.59
MA0114.1	MA0114.1	7.59143e-5
MA0115.1	MA0115.1	0.0341
MA0116.1	MA0116.1	0.0936
MA0117.1	MA0117.1	0.764
MA0119.1	MA0119.1	0.21
MA0122.1	MA0122.1	0.878
MA0124.1	MA0124.1	0.779
MA0125.1	MA0125.1	0.446
MA0131.1	MA0131.1	0.564
MA0135.1	MA0135.1	0.834
MA0136.1	MA0136.1	2.28455e-7
MA0137.2	MA0137.2	0.0854
MA0138.2	MA0138.2	0.824
MA0139.1	MA0139.1	0.128
MA0140.1	MA0140.1	0.00437
MA0141.1	MA0141.1	0.0118
MA0142.1	MA0142.1	0.0113
MA0143.1	MA0143.1	0.00167
MA0144.1	MA0144.1	0.0767
MA0145.1	MA0145.1	0.024
MA0146.1	MA0146.1	0.0978
MA0147.1	MA0147.1	0.409
MA0148.1	MA0148.1	2.70966e-6
MA0149.1	MA0149.1	0.076
MA0150.1	MA0150.1	0.0466
MA0152.1	MA0152.1	0.408
MA0153.1	MA0153.1	9.4975e-11
MA0154.1	MA0154.1	0.0151
MA0155.1	MA0155.1	0.658
MA0156.1	MA0156.1	3.89421e-5
MA0157.1	MA0157.1	0.0193
MA0159.1	MA0159.1	0.00326
MA0160.1	MA0160.1	0.0939
MA0162.1	MA0162.1	0.39
MA0163.1	MA0163.1	0.00401
MA0164.1	MA0164.1	0.991
MA0258.1	MA0258.1	0.0134
MA0259.1	MA0259.1	0.381

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs12112

Novel motif	Logo	P-value
1	1	0.201
10	10	0.207
100	100	0.938
101	101	0.663
102	102	0.718
103	103	0.156
104	104	0.855
105	105	0.414
106	106	0.00847
107	107	0.0317
108	108	0.48
109	109	0.00384
11	11	0.148
110	110	0.158
111	111	0.0425
112	112	0.00529
113	113	0.905
114	114	0.276
115	115	0.0853
116	116	0.562
117	117	0.199
118	118	0.64
119	119	0.141
12	12	0.547
120	120	0.882
121	121	0.23
122	122	0.365
123	123	0.669
124	124	0.741
125	125	0.53
126	126	0.268
127	127	0.184
128	128	0.0328
129	129	0.155
13	13	3.47606e-5
130	130	0.675
131	131	0.64
132	132	0.843
133	133	0.386
134	134	0.562
135	135	0.162
136	136	0.0843
137	137	0.23
138	138	0.696
139	139	0.281
14	14	0.568
140	140	0.338
141	141	0.0736
142	142	0.117
143	143	0.798
144	144	0.903
145	145	0.0969
146	146	0.38
147	147	0.94
148	148	0.868
149	149	0.0725
15	15	0.258
150	150	0.265
151	151	0.335
152	152	0.0356
153	153	0.794
154	154	0.928
155	155	0.578
156	156	0.00454
157	157	0.163
158	158	0.205
159	159	0.02
160	160	0.372
161	161	0.26
162	162	0.844
163	163	0.0699
164	164	0.0188
165	165	0.00938
166	166	0.587
167	167	0.949
168	168	0.651
169	169	0.00668
17	17	0.031
18	18	0.784
19	19	0.0376
2	2	0.448
20	20	0.905
21	21	0.689
22	22	0.0819
23	23	0.21
24	24	0.0355
25	25	0.623
26	26	0.00516
27	27	0.65
28	28	0.334
29	29	0.277
3	3	0.106
30	30	0.439
31	31	0.84
32	32	0.346
33	33	0.244
34	34	0.576
35	35	0.54
36	36	0.693
37	37	0.00536
38	38	0.382
39	39	0.165
4	4	0.643
40	40	0.201
41	41	0.952
42	42	0.41
43	43	0.146
44	44	0.533
45	45	0.427
46	46	0.283
47	47	0.297
48	48	0.233
49	49	0.19
5	5	0.214
50	50	0.276
51	51	0.563
52	52	0.0654
53	53	0.495
54	54	0.547
55	55	0.733
56	56	0.297
57	57	0.918
58	58	0.224
59	59	0.0782
6	6	0.61
60	60	0.00961
61	61	0.359
62	62	0.132
63	63	0.145
64	64	0.971
65	65	0.357
66	66	0.614
67	67	0.954
68	68	0.919
69	69	0.411
7	7	0.0284
70	70	0.0452
71	71	0.0412
72	72	0.339
73	73	0.0148
74	74	0.72
75	75	0.154
76	76	0.873
77	77	0.145
78	78	0.0576
79	79	0.75
8	8	0.318
80	80	0.971
81	81	0.284
82	82	0.0674
83	83	0.251
84	84	0.962
85	85	0.0514
86	86	0.236
87	87	0.262
88	88	0.531
89	89	0.163
9	9	0.337
90	90	0.415
91	91	0.353
92	92	0.081
93	93	0.0781
94	94	0.641
95	95	0.0416
96	96	0.206
97	97	0.818
98	98	0.663
99	99	0.136

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs12112

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
EFO:0002091 biological replicate
FF:0000204 cortical mouse neuron sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000540 (neuron)
0000003 (native cell)
0000548 (animal cell)
0002371 (somatic cell)
0002319 (neural cell)
0000117 (CNS neuron (sensu Vertebrata))
0000393 (electrically responsive cell)
0000211 (electrically active cell)
0000404 (electrically signaling cell)
0000255 (eukaryotic cell)
0002609 (neuron of cerebral cortex)

UBERON: Anatomy
0000468 (multi-cellular organism)
0000955 (brain)
0000956 (cerebral cortex)
0004121 (ectoderm-derived structure)
0000064 (organ part)
0010314 (structure with developmental contribution from neural crest)
0011216 (organ system subdivision)
0000062 (organ)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000481 (multi-tissue structure)
0000073 (regional part of nervous system)
0000477 (anatomical cluster)
0003528 (brain grey matter)
0002791 (regional part of telencephalon)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0002616 (regional part of brain)
0002780 (regional part of forebrain)
0002020 (gray matter)
0010317 (germ layer / neural crest derived structure)
0001017 (central nervous system)
0001016 (nervous system)
0001869 (cerebral hemisphere)
0001893 (telencephalon)
0001890 (forebrain)
0000203 (pallium)

FF: FANTOM5
0000102 (sample by type)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000103 (mouse sample)
0000001 (sample)
0000203 (mouse neuron samples)
0000204 (cortical mouse neuron sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
CL:0000133 (neurectodermal cell)
CL:0000337 (neuroblast (sensu Vertebrata))
CL:0000031 (neuroblast)
CL:0000221 (ectodermal cell)

@@ Line 1: / Line 1: @@
 {{f5samples
-|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000922,UBERON:0000955,UBERON:0000483,UBERON:0000956,UBERON:0000033,UBERON:0000479,UBERON:0002346,UBERON:0000064,UBERON:0000073,UBERON:0004121,UBERON:0000062,UBERON:0004111,UBERON:0000475,UBERON:0000025,UBERON:0000061,UBERON:0000465,UBERON:0000480,UBERON:0000923,UBERON:0002050,UBERON:0005423,UBERON:0000477,UBERON:0002020,UBERON:0002791,UBERON:0003528,UBERON:0000481,UBERON:0000467,UBERON:0002616,UBERON:0001062,UBERON:0000119,UBERON:0005291,UBERON:0002780,UBERON:0006598,UBERON:0002532,UBERON:0001017,UBERON:0001016,UBERON:0000153,UBERON:0007811,UBERON:0000924,UBERON:0001869,UBERON:0001893,UBERON:0001890,UBERON:0000203,UBERON:0005743,UBERON:0003075,UBERON:0003056,UBERON:0001049,UBERON:0006238,UBERON:0006601,UBERON:0005068,UBERON:0006241,UBERON:0003080,UBERON:0006240,UBERON:0007284,UBERON:0007135
+|DRA_sample_Accession=CAGE@SAMD00004767
-|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000540,CL:0000055,CL:0000047,CL:0000144,CL:0000723,CL:0000048,CL:0000548,CL:0000034,CL:0000012,CL:0002321,CL:0002371,CL:0002319,CL:0000221,CL:0000117,CL:0000393,CL:0000220,CL:0000004,CL:0000031,CL:0000211,CL:0000404,CL:0000255,CL:0002609,CL:0000133,CL:0000337
+|accession_numbers=CAGE;DRX008833;DRR009705;DRZ001130;DRZ002515;DRZ012480;DRZ013865
+|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000955,UBERON:0000956,UBERON:0004121,UBERON:0000064,UBERON:0010314,UBERON:0011216,UBERON:0000062,UBERON:0000061,UBERON:0000465,UBERON:0000481,UBERON:0000073,UBERON:0000477,UBERON:0003528,UBERON:0002791,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0002616,UBERON:0002780,UBERON:0002020,UBERON:0010317,UBERON:0001017,UBERON:0001016,UBERON:0001869,UBERON:0001893,UBERON:0001890,UBERON:0000203
+|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000540,CL:0000003,CL:0000548,CL:0002371,CL:0002319,CL:0000117,CL:0000393,CL:0000211,CL:0000404,CL:0000255,CL:0002609
 |ancestors_in_disease_facet=
+|ancestors_in_ff_facet=FF:0000102,FF:0000002,FF:0000101,FF:0000103,FF:0000001,FF:0000203,FF:0000204
 |comment=Previously: Mouse Neurons - substantia nigra, donor3
 |created_by=
 |creation_date=
+|data_phase=2
+|datafreeze_phase=2
 |def=
 |expression_enrichment_score=chr6:55631042..55631102,-!p1@Neurod6!2.78!595.22!Neurod6;;chr11:98190918..98190951,-!p1@Neurod2!2.50!313.59!Neurod2;;chr1:42752574..42752621,+!p@chr1:42752574..42752621,+!2.40!312.12!Pou3f3;;chr1:179374784..179374800,+!p2@Zfp238!2.35!258.70!Zfp238;;chr3:127336052..127336058,+!p1@Neurog2!2.35!222.94!Neurog2;;chr9:118387300..118387317,+!p1@Eomes!2.19!152.70!Eomes;;chr2:61642631..61642684,+!p1@Tbr1!2.15!140.92!Tbr1;;chr12:28027561..28027591,-!p1@Sox11!2.14!854.13!Sox11;;chr2:38206580..38206600,+!p2@Lhx2!2.05!135.45!Lhx2;;chr2:146047829..146047847,+!p1@Insm1!1.93!145.54!Insm1;;chr8:87297280..87297326,-!p2@Nfix!1.86!164.05!Nfix;;chr2:38206744..38206766,+!p1@Lhx2!1.84!82.03!Lhx2;;chrX:90531838..90531861,+!p1@Arx!1.82!80.76!Arx;;chr1:57028125..57028149,-!p2@Satb2!1.77!58.47!Satb2;;chr12:30213247..30213333,+!p1@Myt1l!1.72!51.95!Myt1l;;chr15:76352832..76352900,-!p1@Scrt1!1.72!51.11!Scrt1;;chrX:58146612..58146615,-!p1@Sox3!1.71!50.06!Sox3;;chr3:95032091..95032183,-!p1@Mllt11!1.63!341.99!Mllt11;;chr8:87297330..87297365,-!p5@Nfix!1.63!42.06!Nfix;;chr12:50483639..50483654,+!p1@Foxg1!1.63!41.43!Foxg1;;chr2:79296783..79296801,-!p1@Neurod1!1.63!41.22!Neurod1;;chr5:98609885..98609900,+!p1@Prdm8!1.63!41.22!Prdm8;;chr1:179374820..179374831,+!p3@Zfp238!1.61!40.17!Zfp238;;chr2:61642743..61642758,+!p2@Tbr1!1.60!38.91!Tbr1;;chr8:12395603..12395621,+!p1@Sox1!1.58!37.23!Sox1;;chr6:85137520..85137563,+!p1@Emx1!1.57!36.39!Emx1;;chr3:17954233..17954249,+!p1@Bhlhe22!1.57!36.18!Bhlhe22;;chr7:30088977..30089002,+!p2@Dpf1!1.54!46.48!Dpf1;;chr14:13178147..13178185,-!p1@Fezf2!1.53!32.81!Fezf2;;chr6:144157924..144157955,-!p2@Sox5!1.52!39.54!Sox5;;chr11:21901608..21901634,-!p1@Otx1!1.52!31.76!Otx1;;chr7:116154364..116154444,+!p1@Tub!1.51!52.58!Tub;;chr13:56353536..56353542,-!p1@Neurog1!1.50!30.71!Neurog1;;chr14:13178361..13178386,-!p2@Fezf2!1.50!30.50!Fezf2;;chr7:30092993..30093076,+!p1@Dpf1!1.49!50.06!Dpf1;;chr5:24104751..24104773,-!p5@Smarcd3!1.49!30.08!Smarcd3;;chr6:144152648..144152680,-!p5@Sox5!1.46!27.76!Sox5;;chr4:124334894..124334899,+!p1@Pou3f1!1.43!33.44!Pou3f1;;chr12:109242266..109242295,-!p1@Bcl11b!1.41!200.65!Bcl11b;;chr4:22415443..22415506,-!p1@Pou3f2!1.40!23.98!Pou3f2;;chr2:61642558..61642595,+!p3@Tbr1!1.40!23.98!Tbr1;;chr13:29045321..29045337,-!p2@Sox4!1.39!31.97!Sox4;;chr11:98190955..98190968,-!p2@Neurod2!1.37!22.29!Neurod2;;chr4:154335024..154335039,+!p1@Hes5!1.36!26.29!Hes5;;chr2:71384802..71384815,-!p1@Dlx2!1.35!26.08!Dlx2;;chr11:23978111..23978134,+!p3@Bcl11a!1.34!42.91!Bcl11a;;chr1:173987720..173987729,-!p1@Nhlh1!1.34!20.82!Nhlh1;;chr19:7342725..7342784,+!p1@Rcor2!1.33!82.45!Rcor2;;chr4:82145196..82145229,-!p7@Nfib!1.33!20.61!Nfib;;chr1:57028606..57028625,-!p4@Satb2!1.33!20.40!Satb2;;chr18:69680960..69681007,+!p10@Tcf4!1.32!25.87!Tcf4;;chr1:179374862..179374873,+!p6@Zfp238!1.32!19.98!Zfp238;;chr2:172375081..172375105,+!p1@Tfap2c!1.32!19.98!Tfap2c;;chr1:57028157..57028173,-!p3@Satb2!1.31!19.35!Satb2;;chr1:179374764..179374776,+!p5@Zfp238!1.31!19.35!Zfp238;;chr4:109650609..109650653,+!p1@Dmrta2!1.30!18.93!Dmrta2;;chr3:101814061..101814094,+!p1@Nhlh2!1.30!18.93!Nhlh2;;chr4:119960301..119960359,-!p1@Foxo6!1.29!58.89!Foxo6;;chr4:22415290..22415307,-!p2@Pou3f2!1.29!18.72!Pou3f2;;chr7:25292160..25292213,+!p3@Zfp428!1.27!42.91!Zfp428;;chr19:59533221..59533271,+!p1@Emx2!1.27!21.45!Emx2;;chr17:48015839..48015915,-!p3@Foxp4!1.27!20.82!Foxp4;;chr12:50483663..50483678,+!p3@Foxg1!1.27!17.67!Foxg1;;chr11:23977742..23977794,+!p6@Bcl11a!1.26!21.24!Bcl11a;;chr5:24104540..24104584,-!p7@Smarcd3!1.26!17.04!Smarcd3;;chr2:151907546..151907561,+!p1@Scrt2!1.26!17.04!Scrt2;;chr2:151907338..151907360,+!p2@Scrt2!1.25!16.62!Scrt2;;chr1:57029281..57029326,-!p1@Satb2!1.24!25.45!Satb2;;chr10:42303385..42303401,-!p1@Nr2e1!1.24!16.41!Nr2e1;;chr14:13178323..13178347,-!p3@Fezf2!1.24!16.20!Fezf2;;chr8:87297878..87297935,-!p3@Nfix!1.23!35.33!Nfix;;chr4:54957886..54957907,+!p3@Zfp462!1.22!26.92!Zfp462;;chr3:34548909..34548927,+!p1@Sox2!1.21!25.45!Sox2;;chr3:17954392..17954407,+!p2@Bhlhe22!1.19!14.51!Bhlhe22;;chr2:151906844..151906873,+!p3@Scrt2!1.19!14.51!Scrt2;;chr6:144157968..144157989,-!p7@Sox5!1.18!14.30!Sox5;;chr2:115891534..115891589,-!p1@Meis2!1.17!193.29!Meis2;;chr7:25292141..25292158,+!p2@Zfp428!1.17!47.53!Zfp428;;chr14:118636238..118636257,-!p2@Sox21!1.17!13.67!Sox21;;chr11:23980664..23980706,+!p2@Bcl11a!1.16!57.63!Bcl11a;;chr12:50485973..50486015,+!p2@Foxg1!1.15!13.25!Foxg1;;chr9:118387969..118387984,+!p2@Eomes!1.15!13.25!Eomes;;chr2:152223783..152223812,-!p4@Sox12!1.14!29.02!Sox12;;chr1:42752654..42752665,+!p@chr1:42752654..42752665,+!1.14!12.83!Pou3f3;;chr12:12948633..12948651,-!p1@Mycn!1.13!117.99!Mycn;;chr10:86956396..86956411,-!p1@Ascl1!1.13!19.14!Ascl1;;chr6:55631251..55631265,-!p2@Neurod6!1.13!12.41!Neurod6;;chr19:7342786..7342803,+!p2@Rcor2!1.12!16.20!Rcor2;;chr13:29045559..29045574,-!p1@Sox4!1.11!972.75!Sox4;;chr2:105515586..105515606,+!p4@Pax6!1.11!11.99!Pax6;;chr14:118636214..118636235,-!p1@Sox21!1.10!14.09!Sox21;;chr4:82145232..82145259,-!p9@Nfib!1.10!11.57!Nfib;;chr4:122673278..122673336,+!p1@Mycl1!1.09!36.18!Mycl1;;chr7:91558472..91558512,-!p2@Arnt2!1.07!15.35!Arnt2;;chr13:78338076..78338104,-!p4@Nr2f1!1.07!13.46!Nr2f1;;chr8:87298020..87298041,-!p9@Nfix!1.07!10.73!Nfix;;chrX:108009761..108009788,+!p1@Pou3f4!1.06!10.52!Pou3f4;;chr2:105515635..105515661,+!p5@Pax6!1.05!10.10!Pax6;;chr13:78339382..78339420,-!p3@Nr2f1!1.03!11.57!Nr2f1;;chr4:82151274..82151290,-!p3@Nfib!1.02!153.75!Nfib;;chr1:179372625..179372654,+!p4@Zfp238!1.02!14.72!Zfp238;;chr3:34549144..34549155,+!p5@Sox2!1.02!9.46!Sox2;;chr4:22415600..22415616,-!p3@Pou3f2!1.02!9.46!Pou3f2;;chr19:19185671..19185693,-!p1@Rorb!1.01!22.72!Rorb;;chr3:34549096..34549111,+!p3@Sox2!1.01!9.25!Sox2;;chr2:181501745..181501778,+!p1@Myt1!1.01!9.25!Myt1;;chr7:30089006..30089022,+!p3@Dpf1!1.01!9.25!Dpf1;;chr17:37139472..37139514,+!p1@Zfp57!1.00!61.41!Zfp57;;chr11:23978229..23978268,+!p8@Bcl11a!1.00!10.31!Bcl11a;;chr6:144157893..144157905,-!p14@Sox5!1.00!9.04!Sox5;;chr4:87678709..87678726,-!p4@Mllt3!0.99!28.18!Mllt3;;chr12:54349410..54349461,+!p1@Npas3!0.99!10.73!Npas3;;chr12:30219426..30219506,+!p2@Myt1l!0.99!8.83!Myt1l;;chr2:38194778..38194798,+!p3@Lhx2!0.99!8.83!Lhx2;;chr1:179372543..179372557,+!p9@Zfp238!0.99!8.83!Zfp238;;chr2:65683890..65683907,+!p1@Csrnp3!0.98!16.83!Csrnp3;;chr13:78339428..78339466,-!p2@Nr2f1!0.98!11.78!Nr2f1;;chr3:34548946..34548972,+!p2@Sox2!0.98!9.46!Sox2;;chr14:122874619..122874634,+!p1@Zic2!0.98!8.62!Zic2;;chr6:51382677..51382783,+!p1@Nfe2l3!0.97!21.87!Nfe2l3;;chr11:23978270..23978290,+!p9@Bcl11a!0.97!8.41!Bcl11a;;chr2:71367142..71367167,+!p2@Dlx1!0.97!8.41!Dlx1;;chr3:95032197..95032208,-!p3@Mllt11!0.96!10.31!Mllt11;;chr11:23978291..23978323,+!p7@Bcl11a!0.96!8.20!Bcl11a;;chr10:13685585..13685645,+!p2@Hivep2!0.95!28.60!Hivep2;;chr2:105509045..105509071,+!p1@Pax6!0.95!7.99!Pax6;;chr10:42303452..42303470,-!p2@Nr2e1!0.94!7.78!Nr2e1;;chr6:85137505..85137517,+!p2@Emx1!0.94!7.78!Emx1;;chr9:18278055..18278126,-!p1@Zfp558!0.93!22.29!Zfp558;;chr18:69753168..69753186,+!p12@Tcf4!0.93!10.31!Tcf4;;chr18:69681020..69681032,+!p23@Tcf4!0.93!7.57!Tcf4;;chr15:76352740..76352781,-!p5@Scrt1!0.93!7.57!Scrt1;;chr1:57028111..57028122,-!p9@Satb2!0.92!7.36!Satb2;;chr2:71367871..71367898,+!p1@Dlx1!0.92!7.36!Dlx1;;chr13:48356475..48356492,+!p1@Id4!0.91!161.53!Id4;;chr7:25292331..25292421,+!p1@Zfp428!0.91!53.00!Zfp428;;chr17:37140628..37140631,+!p2@Zfp57!0.91!14.51!Zfp57;;chr6:38204214..38204267,-!p4@D630045J12Rik!0.91!13.67!D630045J12Rik;;chr9:106356278..106356292,+!p3@Pcbp4!0.91!12.41!Pcbp4;;chr18:69753145..69753159,+!p14@Tcf4!0.91!9.89!Tcf4;;chr13:29045274..29045293,-!p6@Sox4!0.91!8.83!Sox4;;chr8:87238155..87238187,-!p13@Nfix!0.91!7.15!Nfix;;chr11:21901587..21901604,-!p2@Otx1!0.91!7.15!Otx1;;chr9:21420744..21420755,+!p3@Smarca4!0.90!21.03!Smarca4;;chr12:109242296..109242307,-!p3@Bcl11b!0.90!10.31!Bcl11b;;chr2:73109983..73109996,+!p1@Sp9!0.90!6.94!Sp9;;chr10:82226649..82226694,-!p2@Nfyb!0.89!44.59!Nfyb;;chr1:38684383..38684394,-!p4@Aff3!0.89!9.46!Aff3;;chr13:29045252..29045271,-!p5@Sox4!0.89!8.41!Sox4;;chr12:28027256..28027282,-!p2@Sox11!0.89!6.73!Sox11;;chr17:35031460..35031518,+!p1@Zbtb12!0.88!35.12!Zbtb12;;chr1:170361991..170362015,-!p6@Pbx1!0.87!14.93!Pbx1;;chr4:87678673..87678706,-!p6@Mllt3!0.87!14.51!Mllt3;;chr6:6832076..6832092,-!p1@Dlx5!0.87!7.57!Dlx5;;chr4:54960870..54960926,+!p1@Zfp462!0.86!23.77!Zfp462;;chr4:13670499..13670526,+!p2@Runx1t1!0.86!14.30!Runx1t1;;chr7:135019147..135019187,-!p3@Zfp668!0.86!14.09!Zfp668;;chr6:38204274..38204327,-!p3@D630045J12Rik!0.86!13.04!D630045J12Rik;;chr6:85137491..85137504,+!p3@Emx1!0.86!6.31!Emx1;;chr6:55631324..55631335,-!p3@Neurod6!0.86!6.31!Neurod6;;chr15:76353005..76353021,-!p2@Scrt1!0.86!6.31!Scrt1;;chr17:25707623..25707639,-!p1@Sox8!0.85!27.34!Sox8;;chr13:15555670..15555771,+!p2@Gli3!0.85!16.20!Gli3;;chr2:152223762..152223777,-!p8@Sox12!0.85!6.94!Sox12;;chr1:179375791..179375803,+!p10@Zfp238!0.85!6.10!Zfp238;;chr4:82151178..82151262,-!p1@Nfib!0.84!253.65!Nfib;;chr4:48058129..48058179,+!p2@Nr4a3!0.84!11.57!Nr4a3;;chr4:150503457..150503498,-!p3@Camta1!0.84!6.73!Camta1;;chr4:97248607..97248649,+!p15@Nfia!0.84!5.89!Nfia;;chr5:24104722..24104736,-!p9@Smarcd3!0.84!5.89!Smarcd3;;chr6:144158183..144158210,-!p11@Sox5!0.84!5.89!Sox5;;chr4:97444297..97444323,+!p2@Nfia!0.83!96.54!Nfia;;chr13:78339476..78339515,-!p1@Nr2f1!0.83!9.04!Nr2f1;;chr15:100325682..100325698,-!p1@Csrnp2!0.82!28.18!Csrnp2;;chr4:48058016..48058032,+!p3@Nr4a3!0.82!9.89!Nr4a3;;chr3:95032184..95032195,-!p4@Mllt11!0.82!7.15!Mllt11;;chr13:78339134..78339185,-!p5@Nr2f1!0.82!7.15!Nr2f1;;chr4:97248473..97248496,+!p16@Nfia!0.82!5.68!Nfia;;chr6:144157991..144158007,-!p9@Sox5!0.82!5.68!Sox5;;chr14:52634234..52634281,-!p3@Zfp219!0.81!15.98!Zfp219;;chr6:47780508..47780583,-!p1@Zfp786!0.81!10.73!Zfp786;;chr2:35960919..35960954,-!p1@Lhx6!0.81!10.73!Lhx6;;chr10:42303410..42303422,-!p3@Nr2e1!0.81!5.47!Nr2e1;;chr15:75447105..75447159,+!p1@Zfp41!0.80!23.14!Zfp41;;chr4:128483680..128483715,-!p3@Zfp362!0.80!20.82!Zfp362;;chr2:152223881..152223933,-!p3@Sox12!0.80!19.14!Sox12;;chr15:100430414..100430470,-!p1@Pou6f1!0.80!17.46!Pou6f1;;chr5:24107676..24107722,-!p4@Smarcd3!0.80!7.36!Smarcd3;;chr14:13178241..13178254,-!p4@Fezf2!0.80!5.26!Fezf2;;chr1:38684260..38684312,-!p2@Aff3!0.79!39.33!Aff3;;chr11:23978078..23978096,+!p4@Bcl11a!0.79!17.04!Bcl11a;;chr11:23977565..23977612,+!p5@Bcl11a!0.79!11.78!Bcl11a;;chr18:69753108..69753139,+!p8@Tcf4!0.79!10.73!Tcf4;;chr2:127347067..127347093,-!p1@Kcnip3!0.79!9.04!Kcnip3;;chr7:37483231..37483263,+!p2@Tshz3!0.79!8.20!Tshz3;;chr1:38684431..38684450,-!p3@Aff3!0.78!8.62!Aff3;;chr2:181501710..181501742,+!p2@Myt1!0.78!5.05!Myt1;;chr6:144158267..144158282,-!p16@Sox5!0.78!5.05!Sox5;;chr4:13678482..13678505,+!p9@Runx1t1!0.78!5.05!Runx1t1;;chr4:13678514..13678539,+!p14@Runx1t1!0.77!4.84!Runx1t1;;chr1:42752559..42752566,+!p@chr1:42752559..42752566,+!0.77!4.84!Pou3f3;;chr2:151906968..151906988,+!p5@Scrt2!0.77!4.84!Scrt2;;chr1:57028556..57028583,-!p5@Satb2!0.77!4.84!Satb2;;chr8:12395500..12395511,+!p5@Sox1!0.77!4.84!Sox1;;chr11:98603185..98603208,+!p1@Thra!0.76!314.02!Thra;;chr4:82151653..82151706,-!p2@Nfib!0.76!146.81!Nfib;;chr5:39075982..39076052,-!p1@Zfp518b!0.76!37.44!Zfp518b;;chr11:98603160..98603171,+!p3@Thra!0.76!24.19!Thra;;chr4:150482563..150482655,-!p2@Camta1!0.76!18.51!Camta1;;chr4:54957910..54957954,+!p2@Zfp462!0.76!15.56!Zfp462;;chr7:25292076..25292114,+!p4@Zfp428!0.76!14.09!Zfp428;;chr9:106356243..106356264,+!p2@Pcbp4!0.75!22.08!Pcbp4;;chr5:122499831..122499891,-!p1@Cux2!0.75!7.36!Cux2;;chr5:122345353..122345358,-!p5@Cux2!0.75!4.63!Cux2;;chr11:23977965..23977974,+!p11@Bcl11a!0.75!4.63!Bcl11a;;chr9:106356211..106356242,+!p1@Pcbp4!0.74!96.96!Pcbp4;;chr4:13670571..13670625,+!p1@Runx1t1!0.74!13.25!Runx1t1;;chr3:51144477..51144506,-!p6@Elf2!0.74!7.36!Elf2;;chr14:76814736..76814781,+!p4@Tsc22d1!0.73!27.97!Tsc22d1;;chr4:87678639..87678653,-!p11@Mllt3!0.73!5.68!Mllt3;;chr13:29045296..29045307,-!p8@Sox4!0.73!5.05!Sox4;;chr12:30220074..30220102,+!p3@Myt1l!0.73!4.42!Myt1l;;chr6:144152590..144152602,-!p22@Sox5!0.73!4.42!Sox5;;chr7:17062114..17062141,-!p1@Npas1!0.73!4.42!Npas1;;chr8:87324243..87324277,-!p1@Nfix!0.72!113.79!Nfix;;chr13:56804721..56804792,+!p2@Smad5!0.72!24.61!Smad5;;chr10:82226613..82226641,-!p4@Nfyb!0.72!12.62!Nfyb;;chr2:56967334..56967366,-!p1@Nr4a2!0.72!9.25!Nr4a2;;chr2:127347094..127347111,-!p2@Kcnip3!0.72!7.36!Kcnip3;;chr2:115890953..115890974,-!p6@Meis2!0.72!6.73!Meis2;;chr18:69752912..69752928,+!p9@Tcf4!0.72!6.73!Tcf4;;chr2:65768174..65768247,+!p2@Csrnp3!0.72!4.21!Csrnp3;;chr2:151907110..151907126,+!p6@Scrt2!0.72!4.21!Scrt2;;chr2:61642695..61642702,+!p5@Tbr1!0.72!4.21!Tbr1;;chr2:181501988..181502026,+!p3@Myt1!0.72!4.21!Myt1;;chr2:71384458..71384526,-!p2@Dlx2!0.72!4.21!Dlx2;;chrX:55284180..55284195,+!p2@Zic3!0.72!4.21!Zic3;;chrX:66613481..66613562,+!p1@Aff2!0.71!19.77!Aff2;;chr7:91558392..91558434,-!p1@Arnt2!0.71!12.62!Arnt2;;chr11:3189683..3189744,+!p2@Patz1!0.71!9.04!Patz1;;chr3:95032558..95032641,-!p2@Mllt11!0.70!25.45!Mllt11;;chr9:106356265..106356276,+!p4@Pcbp4!0.70!6.94!Pcbp4;;chr2:152223734..152223756,-!p6@Sox12!0.70!4.84!Sox12;;chr8:12395874..12395885,+!p2@Sox1!0.70!4.00!Sox1;;chr2:115891454..115891471,-!p3@Meis2!0.69!13.25!Meis2;;chr11:98602203..98602266,+!p4@Thra!0.69!6.52!Thra;;chr4:48058047..48058062,+!p1@Nr4a3!0.69!6.31!Nr4a3;;chr13:29044875..29044928,-!p4@Sox4!0.69!5.47!Sox4;;chr12:109241728..109241781,-!p2@Bcl11b!0.69!4.21!Bcl11b;;chr4:97444590..97444607,+!p6@Nfia!0.68!31.76!Nfia;;chr7:130644017..130644092,-!p1@Zkscan2!0.68!7.99!Zkscan2;;chr12:72149359..72149406,+!p4@Arid4a!0.68!5.26!Arid4a;;chrX:34442872..34442899,-!p1@Nkrf!0.68!5.05!Nkrf;;chr6:144157880..144157889,-!p25@Sox5!0.68!3.79!Sox5;;chr1:179372514..179372525,+!p7@Zfp238!0.68!3.79!Zfp238;;chr15:99532709..99532743,+!p1@Smarcd1!0.67!110.00!Smarcd1;;chr18:69504195..69504213,+!p4@Tcf4!0.67!19.35!Tcf4;;chr8:112229540..112229566,+!p2@Zfp821!0.66!8.62!Zfp821;;chr13:15555428..15555440,+!p7@Gli3!0.66!4.21!Gli3;;chr2:38196588..38196600,+!p4@Lhx2!0.66!3.58!Lhx2;;chr2:115890864..115890869,-!p14@Meis2!0.66!3.58!Meis2;;chr11:23978206..23978219,+!p12@Bcl11a!0.66!3.58!Bcl11a;;chr9:91260594..91260612,-!p1@Zic1!0.66!3.58!Zic1;;chr8:112229478..112229536,+!p1@Zfp821!0.65!35.12!Zfp821;;chr11:98603119..98603130,+!p2@Thra!0.65!34.07!Thra;;chr17:27693525..27693538,+!p5@Hmga1!0.65!13.25!Hmga1;;chr15:75447162..75447217,+!p2@Zfp41!0.65!11.57!Zfp41;;chr15:76755836..76755867,-!p1@Zfp647!0.65!11.36!Zfp647;;chr10:13686815..13686846,+!p3@Hivep2!0.65!8.62!Hivep2;;chr4:13670626..13670657,+!p5@Runx1t1!0.65!5.68!Runx1t1;;chr17:37139455..37139469,+!p3@Zfp57!0.64!5.68!Zfp57;;chr10:84218800..84218829,+!p2@Rfx4!0.64!3.37!Rfx4;;chr10:42303434..42303445,-!p4@Nr2e1!0.64!3.37!Nr2e1;;chr2:71366660..71366702,+!p3@Dlx1!0.64!3.37!Dlx1;;chr9:118387742..118387753,+!p3@Eomes!0.64!3.37!Eomes;;chr2:115891409..115891425,-!p2@Meis2!0.63!10.94!Meis2;;chr7:123174485..123174514,-!p6@Sox6!0.63!4.21!Sox6;;chr7:25292118..2529212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b!0.52!3.15!Rorb;;chr4:13670441..13670463,+!p8@Runx1t1!0.52!2.94!Runx1t1;;chr13:29045174..29045188,-!p7@Sox4!0.52!2.94!Sox4;;chr3:127336115..127336130,+!p4@Neurog2!0.52!2.31!Neurog2;;chr4:97248652..97248671,+!p19@Nfia!0.52!2.31!Nfia;;chr3:17954258..17954267,+!p7@Bhlhe22!0.52!2.31!Bhlhe22;;chr17:48015824..48015836,-!p11@Foxp4!0.52!2.31!Foxp4;;chr2:181498020..181498040,+!p5@Myt1!0.52!2.31!Myt1;;chr7:91520922..91520956,-!p5@Arnt2!0.52!2.31!Arnt2;;chr7:134170081..134170122,-!p2@Maz!0.51!54.05!Maz;;chr1:170362040..170362113,-!p2@Pbx1!0.51!22.72!Pbx1;;chr2:44966659..44966675,-!p7@Zeb2!0.51!7.99!Zeb2;;chr4:97444616..97444631,+!p7@Nfia!0.51!7.57!Nfia;;chr5:122500142..122500167,-!p2@Cux2!0.51!5.68!Cux2;;chr17:32525943..32525992,-!p4@Wiz!0.51!3.79!Wiz;;chr4:63071779..63071791,-!p3@Akna!0.51!3.58!Akna;;chr17:37139432..37139444,+!p4@Zfp57!0.51!3.37!Zfp57;;chr17:35031524..35031539,+!p4@Zbtb12!0.51!3.15!Zbtb12;;chr4:13670661..13670681,+!p12@Runx1t1!0.51!2.73!Runx1t1;;chr14:76814883..76814898,+!p9@Tsc22d1!0.50!5.05!Tsc22d1;;chr12:3891810..3891829,+!p2@Dnmt3a!0.50!3.79!Dnmt3a;;chr7:122968213..122968266,-!p4@Sox6!0.50!2.73!Sox6;;chr9:21420674..21420725,+!p1@Smarca4!0.49!221.47!Smarca4;;chr10:75384307..75384370,-!p1@Smarcb1!0.49!220.63!Smarcb1;;chr1:170362273..170362317,-!p1@Pbx1!0.49!80.13!Pbx1;;chr10:12810631..12810649,+!p1@Plagl1!0.49!72.77!Plagl1;;chr19:26679615..26679646,+!p3@Smarca2!0.49!18.93!Smarca2;;chr6:48552000..48552042,+!p@chr6:48552000..48552042,+!0.49!7.78!Zfp775;;chr17:35031589..35031630,+!p2@Zbtb12!0.49!4.42!Zbtb12;;chr2:152223586..152223604,-!p5@Sox12!0.49!3.37!Sox12;;chr2:181501822..181501834,+!p8@Myt1!0.49!2.10!Myt1;;chr19:59533429..59533470,+!p4@Emx2!0.49!2.10!Emx2;;chr2:65683842..65683856,+!p3@Csrnp3!0.49!2.10!Csrnp3;;chr2:105515793..105515808,+!p3@Pax6!0.49!2.10!Pax6;;chr1:57028594..57028604,-!p10@Satb2!0.49!2.10!Satb2;;chr2:127347042..127347058,-!p3@Kcnip3!0.49!2.10!Kcnip3;;chr4:119487109..119487131,+!p4@Hivep3!0.49!2.10!Hivep3;;chr6:144157869..144157876,-!p26@Sox5!0.49!2.10!Sox5;;chr6:144157960..144157967,-!p20@Sox5!0.49!2.10!Sox5;;chr7:123182318..123182332,-!p11@Sox6!0.49!2.10!Sox6;;chr10:129717274..129717298,-!p1@Neurod4!0.49!2.10!Neurod4;;chr12:50485948..50485959,+!p7@Foxg1!0.49!2.10!Foxg1;;chr12:120085700..120085711,+!p1@Sp8!0.49!2.10!Sp8;;chr12:50486176..50486186,+!p8@Foxg1!0.49!2.10!Foxg1;;chr13:29045308..29045318,-!p10@Sox4!0.49!2.10!Sox4;;chr7:38554684..38554696,-!p10@Zfp536!0.49!2.10!Zfp536;;chr7:52252978..52252989,+!p5@Irf3!0.49!2.10!Irf3;;chr7:38557887..38557910,-!p5@Zfp536!0.49!2.10!Zfp536;;chr9:96631820..96631834,-!p11@Zbtb38!0.49!2.10!Zbtb38;;chr9:91260616..91260653,-!p2@Zic1!0.49!2.10!Zic1;;chr13:83663902..83663927,+!p1@Mef2c!0.48!65.41!Mef2c;;chr2:164860270..164860320,-!p1@Ncoa5!0.48!53.42!Ncoa5;;chr8:108160490..108160512,+!p2@Ctcf!0.48!22.08!Ctcf;;chr7:11080671..11080750,-!p1@Zik1!0.48!18.51!Zik1;;chr17:51952617..51952680,-!p3@Satb1!0.48!13.46!Satb1;;chr17:48061605..48061629,-!p6@Foxp4!0.48!10.73!Foxp4;;chr7:25372631..25372684,-!p1@Zfp575!0.48!7.78!Zfp575;;chr18:65741935..65741964,+!p2@Zfp532!0.48!6.94!Zfp532;;chr3:8666997..8667012,-!p2@Hey1!0.48!5.68!Hey1;;chr2:44972869..44972895,-!p12@Zeb2!0.48!4.63!Zeb2;;chr7:25292246..25292259,+!p6@Zfp428!0.48!2.73!Zfp428;;chr6:6831950..6831985,-!p2@Dlx5!0.48!2.31!Dlx5;;chr6:117791192..117791269,+!p1@Zfp637!0.47!42.49!Zfp637;;chr11:102180696..102180760,-!p2@Ubtf!0.47!12.83!Ubtf;;chr6:14851287..14851342,+!p1@Foxp2!0.47!8.20!Foxp2;;chr7:16986617..16986632,+!p2@Zc3h4!0.47!6.94!Zc3h4;;chr7:4947724..4947743,-!p3@Zfp579!0.47!5.47!Zfp579;;chr18:79306029..79306059,-!p2@Setbp1!0.47!5.05!Setbp1;;chr2:115891427..115891441,-!p4@Meis2!0.47!5.05!Meis2;;chr1:170361777..170361797,-!p10@Pbx1!0.47!4.00!Pbx1;;chr4:87679181..87679192,-!p10@Mllt3!0.47!3.15!Mllt3;;chr17:51952537..51952552,-!p15@Satb1!0.47!2.10!Satb1;;chr1:179372411..179372509,+!p1@Zfp238!0.46!33.02!Zfp238;;chr19:26679654..26679675,+!p1@Smarca2!0.46!23.98!Smarca2;;chr11:50641183..50641244,-!p1@Zfp354c!0.46!19.98!Zfp354c;;chr8:72498266..72498306,-!p3@Gatad2a!0.46!17.25!Gatad2a;;chr3:8666963..8666978,-!p1@Hey1!0.46!16.41!Hey1;;chr6:38204109..38204155,-!p1@D630045J12Rik!0.46!13.67!D630045J12Rik;;chr4:126703093..126703158,+!p3@Sfpq!0.46!6.73!Sfpq;;chr6:47827570..47827593,+!p3@Zfp282!0.46!6.52!Zfp282;;chr7:13063643..13063662,+!p2@Zfp606!0.46!6.10!Zfp606;;chr4:154010228..154010244,-!p4@Prdm16!0.46!2.94!Prdm16;;chr4:82151126..82151133,-!p8@Nfib!0.46!2.73!Nfib;;chr10:13685657..13685677,+!p7@Hivep2!0.46!2.73!Hivep2;;chr8:87237692..87237703,-!p12@Nfix!0.46!2.73!Nfix;;chr4:154010313..154010324,-!p9@Prdm16!0.46!1.89!Prdm16;;chr13:78338057..78338069,-!p11@Nr2f1!0.46!1.89!Nr2f1;;chrX:55283799..55283813,+!p1@Zic3!0.46!1.89!Zic3;;chrX:34442842..34442866,-!p3@Nkrf!0.46!1.89!Nkrf;;chr5:122500227..122500240,-!p6@Cux2!0.46!1.89!Cux2;;chr2:151907604..151907629,+!p4@Scrt2!0.46!1.89!Scrt2;;chr2:172375136..172375149,+!p2@Tfap2c!0.46!1.89!Tfap2c;;chr7:134170310..134170341,-!p5@Maz!0.45!22.29!Maz;;chr7:134170496..134170539,-!p4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+|ffid_belonging_in_development=CL:0000133,CL:0000337,CL:0000031,CL:0000221
 |fonse_cell_line=
 |fonse_cell_line_closure=
@@ Line 38: / Line 44: @@
 |is_a=EFO:0002091;;FF:0000204
 |is_obsolete=
+|library_id=CNhs12112
+|library_id_phase_based=2:CNhs12112
+|microRNAs=
+|microRNAs_nn=
+|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/mouse#cage;sample;11647
+|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/mouse#cage;sample;11647
+|mm10bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/mm10_v2/basic/mouse.primary_cell.hCAGE/Mouse%2520Neurons%2520-%2520cortical%252c%2520donor3.CNhs12112.11647-122D9.mm10.nobarcode.bam
+|mm10ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/mm10_v2/basic/mouse.primary_cell.hCAGE/Mouse%2520Neurons%2520-%2520cortical%252c%2520donor3.CNhs12112.11647-122D9.mm10.nobarcode.ctss.bed.gz
+|mm9bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/mouse.primary_cell.hCAGE/Mouse%2520Neurons%2520-%2520cortical%252c%2520donor3.CNhs12112.11647-122D9.mm9.nobarcode.bam
+|mm9ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/mouse.primary_cell.hCAGE/Mouse%2520Neurons%2520-%2520cortical%252c%2520donor3.CNhs12112.11647-122D9.mm9.ctss.bed.gz
+|mm9fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/mouse.primary_cell.hCAGE/Mouse%2520Neurons%2520-%2520cortical%252c%2520donor3.CNhs12112.11647-122D9.mm9.nobarcode.rdna.fa.gz
 |name=Mouse Neurons - cortical, donor3
 |namespace=FANTOM5
@@ Line 43: / Line 60: @@
 |profile_cagescan=,,,
 |profile_hcage=CNhs12112,LSID839,release011,COMPLETED
-|profile_rnaseq=,,,
+|profile_rnaseq=
 |profile_srnaseq=,,,
+|repeat_enrich_byfamily=-0.0115719597198977,0,0,0,0,0,-0.390143576523977,0,0,0,0,-0.0843392403965415,0,0,0,0,0,0,-0.108991360752803,0,0,0,0,0,0,0,0,0,0,0,0,0.373789842939841,-0.47552080219426,0,0,0,0,0,-0.133079189476977,0.145090197067076,-0.015767397991393,-0.412010942761882,0.250428111200148,0.212447273240964,0,0,0,0,0,0,0,0,0,0,0,-0.0660055475634404,0,0,0,0,0,0,0,0,0,0,-0.00589405584259346,-0.310650657339386,-0.00560397073338384,0.00485828606803231,0,-0.0780086007519514,0.0847311082965715,0,0,0,0,0.0286877179273874,0.185682473316225,-0.0788315948399074,0,0,0,0,0,0,0.142732365665681,0.00761237528067005,-0.0609972078645157,0,0,0,0.354482956170509,0
 |rna_box=122
 |rna_catalog_number=custom
@@ Line 58: / Line 76: @@
 |rna_weight_ug=10
 |sample_age=
+|sample_category=primary cells
 |sample_cell_catalog=N/A
 |sample_cell_line=
@@ Line 78: / Line 97: @@
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 |xref=
+|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_mouse;search_select_hide=table111:11647-122D9;search_select_hide=table117:11647-122D9
 }}

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FF:11647-122D9: Difference between revisions

From FANTOM5_SSTAR

Latest revision as of 18:13, 4 June 2020

CNhs12112

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	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0