FF:11667-122G2: Difference between revisions
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{{f5samples | {{f5samples | ||
|ancestors_in_anatomy_facet=UBERON: | |DRA_sample_Accession=CAGE@SAMD00004947 | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL: | |DRA_sample_Accession_RNASeq=sRNA-Seq@SAMD00004947 | ||
|accession_numbers=CAGE;DRX008270;DRR009142;DRZ000567;DRZ001952;DRZ011917;DRZ013302 | |||
|accession_numbers_RNASeq=sRNA-Seq;DRX037262;DRR041628;DRZ007270 | |||
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0002384,UBERON:0000479,UBERON:0000055,UBERON:0004111,UBERON:0000061,UBERON:0000465,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0002049,UBERON:0007798,UBERON:0001473,UBERON:0002465,UBERON:0004535,UBERON:0004536,UBERON:0006558,UBERON:0002193,UBERON:0002405,UBERON:0001009 | |||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0002320,CL:0002371,CL:0000255,CL:0000057,CL:0002554 | |||
|ancestors_in_disease_facet= | |ancestors_in_disease_facet= | ||
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000057,FF:0000001,FF:0000065 | |||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|data_phase=2 | |||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score= | |||
|fonse_cell_line= | |fonse_cell_line= | ||
|fonse_cell_line_closure= | |fonse_cell_line_closure= | ||
| Line 35: | Line 44: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Fibroblast%2520-%2520Lymphatic%252c%2520donor3.CNhs12118.11667-122G2.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Fibroblast%2520-%2520Lymphatic%252c%2520donor3.CNhs12118.11667-122G2.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Fibroblast%2520-%2520Lymphatic%252c%2520donor3.CNhs12118.11667-122G2.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Fibroblast%2520-%2520Lymphatic%252c%2520donor3.CNhs12118.11667-122G2.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Fibroblast%2520-%2520Lymphatic%252c%2520donor3.CNhs12118.11667-122G2.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:11667-122G2 | |id=FF:11667-122G2 | ||
|is_a=EFO:0002091;;FF: | |is_a=EFO:0002091;;FF:0000065 | ||
|is_obsolete= | |||
|library_id=CNhs12118 | |||
|library_id_phase_based=2:CNhs12118 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11667 | |||
|microRNAs_nonnovel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#srna;sample;SRhi10015.GTGGCC.11667 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11667 | |||
|microRNAs_novel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer_novel/#/human#srna;sample;SRhi10015.GTGGCC.11667 | |||
|name=Fibroblast - Lymphatic, donor3 | |name=Fibroblast - Lymphatic, donor3 | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
| Line 42: | Line 65: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs12118,LSID839,release011,COMPLETED | |profile_hcage=CNhs12118,LSID839,release011,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=SRhi10015,,, | |profile_srnaseq=SRhi10015,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
|repeat_enrich_byfamily=0,0,0,0,0,0,0,-0.160318030086386,0,0.310850458076746,0.74705519322776,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0818563815657862,0,0,0,0,0,0.288939738662822,0,0,0.455256000491397,0,0,0,0,0,0,0,0,0,0,0,0,0.315719657526068,0.245506353396383,0,0,0,0,0,0,0,0.22534345972961,0,0,0,0,0,0,0,0.138187030671609,0,0,0.137835764701117,0,0,0,0,0,0,0,0,0.235179391914214,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0597591171162797,0,0,0,-0.0584468268118252,0.119855108502578,0.117589695957107,0,0,0,-0.0980353512377064,0.492116576446541,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.096373593922461,0,0,0,0.284095151212476,0.548369485839465,0,0,0,0,0,0 | |||
|repeat_enrich_byname=0,0,0,0,-0.0980353512377064,0,0,0,0,0,0,0,0,0,0,0,0.251938086399323,0,0.114126371518251,-0.143515142523472,0,0,0.126900064689071,0,0,0,0,0,0,0,0,0,0.107059524961649,0,-0.0504125515893149,0,0,0,0,0,-0.305472230898407,0,-0.056668365192403,-0.0683442610773682,0,0,0,0,0.0969075074652262,0,-0.120879483793741,-0.0827201683234173,0.013567803811407,0.200066421296087,-0.055712496781182,0,0,0,-0.288285172972491,0.188203608046526,0,0,-0.121779851751874,-0.181349618560659,0,0,-0.391044581551635,0,-0.239267061220832,0.492002534661466,0,-0.326463659293669,0,0,0,0,0,0,0,0,0,0,0,0.498572481723647,-0.326988596678969,0,0,0,0,0.0705612525245063,0,0,0.407054706313078,0.428448747543695,0.111063368001072,0.19692155603283,0,-0.302389727009913,0.00441520423771347,-0.2885889738148,-0.00489439745363218,0.351715112313749,0.590359142719797,0.033746949050196,0.0597591171162797,-0.198060038843752,-0.043172227487071,0.385146808722071,0.126652663628329,0.318742408751711,0.173885752576315,0,0,0.157670465434911,-0.37824615230655,0,0,0.235119547682515,0.026854520227966,0.288348673666085,0.078640554230484,0.174722459289021,-0.158961317999779,-0.0395325284566706,0.663680283783036,0.0329577844907696,0.281126614353061,0,0.235179391914214,0,0.0812131879154475,0.257868699234362,0.164514689090965,0,-0.483977461810981,-0.0683442610773682,0,0.184705154908715,0.387009082203545,0,0,0.146457031287876,0,0,0,0,0,0.118655583516387,0.0487204472400934,0.00232383035866901,0,0.106584182861758,-0.12830983658224,-0.103837262887146,0,-0.0636038111284815,0,0.0581573528220682,0.271806517174258,0,0.251735906100724,0.0836789933215312,0.223556936916032,0.239710217005157,-0.0584468268118252,-0.343574298844851,-0.473201259836112,0.157492293840624,-0.0637056026309384,0,1.7743731480356,0.167828665937677,-0.0103658392353124,0.10084273064812,0.0285719974843672,0.313943546217336,0.184503367307623,-0.164342897175707,0,-0.506511802807285,0,0.0331152343716486,0.0477788387970196,-0.439289374580686,-0.56991234849952,0,0.276527058587574,0.161493210508731,0,0,0,0,-0.150367083334639,-0.198579004827695,-0.0940607319074822,-0.138989456679195,0,-0.0648458962303685,0,0,-0.0056336583123463,-0.235476037764389,0.235179391914214,0.0276449845460006,0.116031347945892,0.0578889812016004,0.383145888249954,0,0.187966605094847,-0.258802703061845,0,0,0.267250847465037,0.38126657308563,0.0423216984382615,-0.0181469495725419,0.131762987685492,0.0089668865028513,0,0,-0.177527765965176,0,0.145220038709578,0,0,0.358185469648545,0.467087811735806,0,0,0,0,0,0,0,0,0,0,0,-0.899350644058442,-0.119653938302234,0,0.345730439562509,0,0.38689763493088,0,0,0,0,0,0.58821259027026,-0.199380790608463,0.136783182412643,0.112161976237794,0,0,0,0,-0.215723402553475,-0.203236562094724,0,-0.131862706497632,0,0,0,0,-0.0861409897892114,0,0,0,0,-0.057730457053664,0.229703769757516,0,0,0,0.984233152893083,0,0,0,0,-0.293664752401792,0,0,0.0317638488935827,0,0.406465653129157,-0.0815818795468414,0,0.00605322384908795,0.692871361756881,0.424200564023395,0,0,-0.0261677398756738,0,0,-1.03594432163325,0,0,0.09666492001099,0,0,0,0,0,0,-0.214314512399756,0,0,0,0,0,0,0,0,0,0,0,-0.0690794036707545,-0.0922240566585104,0,0,0,0,0,0,0,-0.0241060230789031,-0.36437661876641,0,0,0,0,0,0.235179391914214,0,0,-0.471425939663242,0,0,0,0,0,0.138187030671609,0,0,0,0,1.10721275152464,0,0,0.310850458076746,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.123319086035448,0.594309273987169,0,0,0,0,0,0,0,-0.0396539062918767,0,0.38689763493088,0,0,-0.113884373708977,0,0,0,0.130383007125057,0,-0.160318030086386,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.589041361106611,0.0928141171768845,0.255106799904428,0,0,0,0.098424158565406,0,0,0,0,0,0,-0.031340424028527,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0962259712900034,0,0,0,0,0,0,0,0.288939738662822,0,0,-0.0920328098005262,0,0,0,0,0,0,0.337181965676868,0.559708394336803,-0.0281710529201748,0,0,0,0.063204123474652,0,0,0.0265670953339133,0,0.320120247511978,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0818563815657862,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0340113632754165,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.306879166662241,0,0,0,0.286030732027844,0,0,0,0,0,0,0.235179391914214,0,0.38689763493088,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.58821259027026,0,0,0,0.37491199531925,0,0,0,0,0,0,0,0,0,0,0,0,0,0.338675559691826,0,0.302521002700853,0,0,0,0,0,0.235179391914214,0,0,0,0,0,0,0,0,0,0,0.0377085477545474,0,0,0,0,0.825541800622149,0,0,0,0,0,0,0.235179391914214,0,0,0,0.662105022396895,0,0,0,0,0,0,0,0,0,0,0.245506353396383,0,0,0.504688700793293,0,0,0,0,0,0,0,0,0,0,0,0,0.173859212764087,0,0,0,0,0,0,0,0,0,0,0.450686919459219,0,0,0,0,0,0,0,0,0.38689763493088,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.291271360904545,0.548369485839465,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.117589695957107,0,0,0,0,0,0,0,0,0.235179391914214,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0236715649089509,0,0,0,0,0,0,0,0,0,0,0,0,0,0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| |||
|rna_box=122 | |rna_box=122 | ||
|rna_catalog_number=SC2535 | |rna_catalog_number=SC2535 | ||
| Line 56: | Line 82: | ||
|rna_tube_id=122G2 | |rna_tube_id=122G2 | ||
|rna_weight_ug=10 | |rna_weight_ug=10 | ||
|rnaseq_library_id=SRhi10015.GTGGCC | |||
|sample_age= | |sample_age= | ||
|sample_category=primary cells | |||
|sample_cell_catalog=lot:5389 | |sample_cell_catalog=lot:5389 | ||
|sample_cell_line= | |sample_cell_line= | ||
| Line 69: | Line 97: | ||
|sample_ethnicity= | |sample_ethnicity= | ||
|sample_experimental_condition= | |sample_experimental_condition= | ||
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;5.80783426772024e-257!GO:0005737;cytoplasm;8.18900101801563e-163!GO:0044444;cytoplasmic part;4.48686986841019e-126!GO:0043231;intracellular membrane-bound organelle;9.74457016473783e-125!GO:0043227;membrane-bound organelle;2.03068065659696e-124!GO:0043226;organelle;1.73229886793156e-123!GO:0043229;intracellular organelle;2.607754313236e-123!GO:0044422;organelle part;2.62940027252037e-96!GO:0044446;intracellular organelle part;2.24044012642977e-95!GO:0005739;mitochondrion;7.61751382290998e-66!GO:0005515;protein binding;4.4664818753902e-60!GO:0044237;cellular metabolic process;4.81186176947641e-60!GO:0044238;primary metabolic process;3.83825923354659e-58!GO:0030529;ribonucleoprotein complex;1.04812339129632e-56!GO:0032991;macromolecular complex;1.39657392854654e-56!GO:0043170;macromolecule metabolic process;8.66974192018088e-48!GO:0031090;organelle membrane;1.69819813496648e-47!GO:0043233;organelle lumen;2.06752239475173e-44!GO:0031974;membrane-enclosed lumen;2.06752239475173e-44!GO:0009058;biosynthetic process;2.57071056542654e-44!GO:0005840;ribosome;2.0020152770518e-42!GO:0044429;mitochondrial part;2.48249403514504e-42!GO:0019538;protein metabolic process;7.56478515269131e-40!GO:0006412;translation;1.43293191755919e-38!GO:0044249;cellular biosynthetic process;2.31273407939313e-38!GO:0003735;structural constituent of ribosome;3.98639405859257e-38!GO:0003723;RNA binding;1.01027172168547e-36!GO:0044260;cellular macromolecule metabolic process;2.96500944175478e-36!GO:0009059;macromolecule biosynthetic process;1.47192938722116e-35!GO:0044267;cellular protein metabolic process;7.20407659702067e-35!GO:0044428;nuclear part;9.37045758347485e-34!GO:0031967;organelle envelope;2.30658448539524e-33!GO:0031975;envelope;3.42334054369102e-33!GO:0033279;ribosomal subunit;4.95078377783128e-33!GO:0005829;cytosol;1.1469342897657e-31!GO:0005740;mitochondrial envelope;5.60576547386408e-30!GO:0005634;nucleus;9.0699518206747e-30!GO:0031966;mitochondrial membrane;3.20330324284187e-28!GO:0016043;cellular component organization and biogenesis;1.49221149363211e-27!GO:0043234;protein complex;5.45993010320008e-27!GO:0019866;organelle inner membrane;1.54167986451999e-26!GO:0015031;protein transport;1.80901374980041e-26!GO:0005743;mitochondrial inner membrane;1.76528365421345e-25!GO:0005830;cytosolic ribosome (sensu Eukaryota);5.41285877401496e-25!GO:0033036;macromolecule localization;6.48005639881102e-25!GO:0045184;establishment of protein localization;2.15309342472131e-24!GO:0008104;protein localization;1.23719930291396e-23!GO:0006396;RNA processing;1.67623909547504e-23!GO:0031981;nuclear lumen;8.51298233742599e-22!GO:0005783;endoplasmic reticulum;6.4644822964115e-21!GO:0043283;biopolymer metabolic process;1.56523660676853e-20!GO:0065003;macromolecular complex assembly;2.06267181543328e-20!GO:0046907;intracellular transport;1.13271064637416e-19!GO:0006996;organelle organization and biogenesis;1.80257789959028e-19!GO:0016071;mRNA metabolic process;3.80512457306524e-19!GO:0010467;gene expression;5.26479492273451e-19!GO:0044445;cytosolic part;1.1889922556865e-18!GO:0022607;cellular component assembly;1.35457781187491e-18!GO:0006119;oxidative phosphorylation;1.77695833834861e-18!GO:0044455;mitochondrial membrane part;2.68381678534378e-18!GO:0044432;endoplasmic reticulum part;4.48653126471397e-18!GO:0015934;large ribosomal subunit;4.88266789493193e-18!GO:0006886;intracellular protein transport;1.14670446009007e-17!GO:0012505;endomembrane system;4.79385098634523e-17!GO:0008380;RNA splicing;1.5524355834646e-16!GO:0051186;cofactor metabolic process;6.08045866695429e-16!GO:0015935;small ribosomal subunit;6.41820925084677e-16!GO:0005746;mitochondrial respiratory chain;7.03338047151665e-16!GO:0043228;non-membrane-bound organelle;7.81657412368489e-16!GO:0043232;intracellular non-membrane-bound organelle;7.81657412368489e-16!GO:0031980;mitochondrial lumen;1.3992468950906e-15!GO:0005759;mitochondrial matrix;1.3992468950906e-15!GO:0006397;mRNA processing;1.74206870613685e-15!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;3.67008633980738e-15!GO:0048770;pigment granule;6.53831218241828e-15!GO:0042470;melanosome;6.53831218241828e-15!GO:0008134;transcription factor binding;8.58992762479384e-15!GO:0022613;ribonucleoprotein complex biogenesis and assembly;1.17651525801046e-14!GO:0050136;NADH dehydrogenase (quinone) activity;7.02021352013384e-14!GO:0003954;NADH dehydrogenase activity;7.02021352013384e-14!GO:0008137;NADH dehydrogenase (ubiquinone) activity;7.02021352013384e-14!GO:0005794;Golgi apparatus;7.65204746079438e-14!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;8.20090590467132e-14!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);1.61174887401423e-13!GO:0006457;protein folding;2.46554528106906e-13!GO:0042175;nuclear envelope-endoplasmic reticulum network;5.64686813694863e-13!GO:0005654;nucleoplasm;7.2862372769049e-13!GO:0005789;endoplasmic reticulum membrane;9.36771626738364e-13!GO:0016874;ligase activity;1.56429901533437e-12!GO:0042775;organelle ATP synthesis coupled electron transport;2.05013333350601e-12!GO:0042773;ATP synthesis coupled electron transport;2.05013333350601e-12!GO:0030964;NADH dehydrogenase complex (quinone);3.08961617716306e-12!GO:0045271;respiratory chain complex I;3.08961617716306e-12!GO:0005747;mitochondrial respiratory chain complex I;3.08961617716306e-12!GO:0012501;programmed cell death;3.08961617716306e-12!GO:0005681;spliceosome;4.55186447092534e-12!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;4.9337982565639e-12!GO:0006732;coenzyme metabolic process;5.78655347838091e-12!GO:0006915;apoptosis;7.32039575478664e-12!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);9.74984350019259e-12!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;9.92798105482483e-12!GO:0044451;nucleoplasm part;1.66718814195912e-11!GO:0044248;cellular catabolic process;2.46045717956877e-11!GO:0008219;cell death;2.99246743378711e-11!GO:0016265;death;2.99246743378711e-11!GO:0005761;mitochondrial ribosome;4.96858584707942e-11!GO:0000313;organellar ribosome;4.96858584707942e-11!GO:0006259;DNA metabolic process;5.06565799142717e-11!GO:0051641;cellular localization;6.6804638947221e-11!GO:0051649;establishment of cellular localization;8.25235199408157e-11!GO:0006512;ubiquitin cycle;8.86986913229956e-11!GO:0003712;transcription cofactor activity;1.14653356934588e-10!GO:0043412;biopolymer modification;1.41745564507407e-10!GO:0009055;electron carrier activity;1.94509434886988e-10!GO:0016491;oxidoreductase activity;2.0239845012765e-10!GO:0044265;cellular macromolecule catabolic process;3.5466586595157e-10!GO:0005793;ER-Golgi intermediate compartment;4.56272936798872e-10!GO:0006605;protein targeting;5.55726606069981e-10!GO:0007049;cell cycle;6.18619980559551e-10!GO:0000166;nucleotide binding;6.73881614815338e-10!GO:0048523;negative regulation of cellular process;8.26978988555802e-10!GO:0000502;proteasome complex (sensu Eukaryota);8.26978988555802e-10!GO:0006464;protein modification process;1.05085488981473e-09!GO:0005730;nucleolus;1.08797600174908e-09!GO:0051082;unfolded protein binding;1.21751014053187e-09!GO:0043285;biopolymer catabolic process;1.64300184931512e-09!GO:0051188;cofactor biosynthetic process;3.2466136226421e-09!GO:0016462;pyrophosphatase activity;3.55247196991231e-09!GO:0009057;macromolecule catabolic process;3.79211392137858e-09!GO:0016817;hydrolase activity, acting on acid anhydrides;4.43024804011048e-09!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;4.64853561817414e-09!GO:0022618;protein-RNA complex assembly;7.66189038069554e-09!GO:0048193;Golgi vesicle transport;7.66189038069554e-09!GO:0051603;proteolysis involved in cellular protein catabolic process;8.38240817854181e-09!GO:0003714;transcription corepressor activity;1.07615661664538e-08!GO:0019941;modification-dependent protein catabolic process;1.12180102089976e-08!GO:0043632;modification-dependent macromolecule catabolic process;1.12180102089976e-08!GO:0044257;cellular protein catabolic process;1.1907925771609e-08!GO:0017111;nucleoside-triphosphatase activity;1.2322434654532e-08!GO:0048519;negative regulation of biological process;1.42676971196533e-08!GO:0043067;regulation of programmed cell death;1.74813451138553e-08!GO:0006511;ubiquitin-dependent protein catabolic process;1.96064819494633e-08!GO:0042981;regulation of apoptosis;1.97530201317464e-08!GO:0008135;translation factor activity, nucleic acid binding;2.31705503019407e-08!GO:0051726;regulation of cell cycle;4.73835804597395e-08!GO:0000074;regulation of progression through cell cycle;6.53392369564634e-08!GO:0030163;protein catabolic process;8.55915056920677e-08!GO:0022402;cell cycle process;9.12426581833525e-08!GO:0016192;vesicle-mediated transport;1.53143841902405e-07!GO:0016564;transcription repressor activity;1.69282669566854e-07!GO:0043687;post-translational protein modification;1.75234442790139e-07!GO:0009150;purine ribonucleotide metabolic process;2.63518432921316e-07!GO:0005788;endoplasmic reticulum lumen;2.82213348036058e-07!GO:0006163;purine nucleotide metabolic process;3.38267491674548e-07!GO:0006325;establishment and/or maintenance of chromatin architecture;3.550429895362e-07!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;3.91335172471229e-07!GO:0006366;transcription from RNA polymerase II promoter;3.91335172471229e-07!GO:0006091;generation of precursor metabolites and energy;4.1428131310449e-07!GO:0016740;transferase activity;4.21008542531823e-07!GO:0000398;nuclear mRNA splicing, via spliceosome;4.74196470990563e-07!GO:0000375;RNA splicing, via transesterification reactions;4.74196470990563e-07!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;4.74196470990563e-07!GO:0007005;mitochondrion organization and biogenesis;4.8057032579777e-07!GO:0017076;purine nucleotide binding;5.21296598657435e-07!GO:0009259;ribonucleotide metabolic process;5.26399726081743e-07!GO:0043069;negative regulation of programmed cell death;7.29692108491525e-07!GO:0032553;ribonucleotide binding;7.64159767184584e-07!GO:0032555;purine ribonucleotide binding;7.64159767184584e-07!GO:0009152;purine ribonucleotide biosynthetic process;7.72202261917787e-07!GO:0008639;small protein conjugating enzyme activity;1.00929851980806e-06!GO:0006164;purine nucleotide biosynthetic process;1.04017744170332e-06!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;1.04894893790067e-06!GO:0009199;ribonucleoside triphosphate metabolic process;1.10566220402055e-06!GO:0043066;negative regulation of apoptosis;1.12837132362775e-06!GO:0006333;chromatin assembly or disassembly;1.14621054201704e-06!GO:0000278;mitotic cell cycle;1.31559278209465e-06!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;1.34718582199591e-06!GO:0009108;coenzyme biosynthetic process;1.4352020728098e-06!GO:0009141;nucleoside triphosphate metabolic process;1.4352020728098e-06!GO:0006323;DNA packaging;1.44493302749535e-06!GO:0005768;endosome;1.45239289244301e-06!GO:0009056;catabolic process;1.56287331040794e-06!GO:0009205;purine ribonucleoside triphosphate metabolic process;1.59959795571581e-06!GO:0009144;purine nucleoside triphosphate metabolic process;1.59959795571581e-06!GO:0006461;protein complex assembly;1.88383915237161e-06!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;1.98085322344338e-06!GO:0004842;ubiquitin-protein ligase activity;2.00368382127174e-06!GO:0008654;phospholipid biosynthetic process;2.00368382127174e-06!GO:0006399;tRNA metabolic process;2.02069140903475e-06!GO:0009260;ribonucleotide biosynthetic process;2.35681184713078e-06!GO:0017038;protein import;2.51491914305707e-06!GO:0065004;protein-DNA complex assembly;2.89831047808239e-06!GO:0005773;vacuole;2.97159780848719e-06!GO:0016563;transcription activator activity;3.32068813832446e-06!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;3.63263797547392e-06!GO:0004812;aminoacyl-tRNA ligase activity;3.63263797547392e-06!GO:0016875;ligase activity, forming carbon-oxygen bonds;3.63263797547392e-06!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;3.66516733188408e-06!GO:0009142;nucleoside triphosphate biosynthetic process;3.81081836219631e-06!GO:0009201;ribonucleoside triphosphate biosynthetic process;3.81081836219631e-06!GO:0030532;small nuclear ribonucleoprotein complex;3.97304687752179e-06!GO:0015078;hydrogen ion transmembrane transporter activity;4.01724132802847e-06!GO:0006916;anti-apoptosis;4.60103674466075e-06!GO:0009117;nucleotide metabolic process;4.605053229751e-06!GO:0003743;translation initiation factor activity;4.71563516158514e-06!GO:0031497;chromatin assembly;5.45428268898597e-06!GO:0006913;nucleocytoplasmic transport;5.63517887540581e-06!GO:0006334;nucleosome assembly;5.64918509048529e-06!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;5.64918509048529e-06!GO:0009145;purine nucleoside triphosphate biosynthetic process;5.64918509048529e-06!GO:0019787;small conjugating protein ligase activity;5.99214659942926e-06!GO:0016879;ligase activity, forming carbon-nitrogen bonds;6.20158334442432e-06!GO:0042254;ribosome biogenesis and assembly;6.20158334442432e-06!GO:0015986;ATP synthesis coupled proton transport;6.20158334442432e-06!GO:0015985;energy coupled proton transport, down electrochemical gradient;6.20158334442432e-06!GO:0044262;cellular carbohydrate metabolic process;7.42122897037885e-06!GO:0006446;regulation of translational initiation;7.42539873134016e-06!GO:0048522;positive regulation of cellular process;8.29184250979553e-06!GO:0030176;integral to endoplasmic reticulum membrane;8.5137435829219e-06!GO:0051169;nuclear transport;9.09602009697893e-06!GO:0045786;negative regulation of progression through cell cycle;9.22422741425683e-06!GO:0044431;Golgi apparatus part;9.50832054612053e-06!GO:0008610;lipid biosynthetic process;9.57253515857089e-06!GO:0051246;regulation of protein metabolic process;1.0003522465694e-05!GO:0043038;amino acid activation;1.02850308239305e-05!GO:0006418;tRNA aminoacylation for protein translation;1.02850308239305e-05!GO:0043039;tRNA aminoacylation;1.02850308239305e-05!GO:0030554;adenyl nucleotide binding;1.04824266899441e-05!GO:0016604;nuclear body;1.07980431969424e-05!GO:0008361;regulation of cell size;1.11781306463824e-05!GO:0016049;cell growth;1.23278122526444e-05!GO:0032559;adenyl ribonucleotide binding;1.25126372464497e-05!GO:0051276;chromosome organization and biogenesis;1.30640444854718e-05!GO:0006413;translational initiation;1.37113594005181e-05!GO:0009060;aerobic respiration;1.37113594005181e-05!GO:0005635;nuclear envelope;1.55431796810085e-05!GO:0005524;ATP binding;1.58035513181267e-05!GO:0046034;ATP metabolic process;1.59339267756458e-05!GO:0030120;vesicle coat;1.59339267756458e-05!GO:0030662;coated vesicle membrane;1.59339267756458e-05!GO:0016881;acid-amino acid ligase activity;1.65716319189363e-05!GO:0016070;RNA metabolic process;2.02144624713343e-05!GO:0045259;proton-transporting ATP synthase complex;2.2268539032525e-05!GO:0031324;negative regulation of cellular metabolic process;2.33192463433291e-05!GO:0019829;cation-transporting ATPase activity;2.49631708971912e-05!GO:0000785;chromatin;2.64781829576698e-05!GO:0001558;regulation of cell growth;2.90703501227375e-05!GO:0003676;nucleic acid binding;2.90703501227375e-05!GO:0045454;cell redox homeostasis;3.04914877836741e-05!GO:0000323;lytic vacuole;3.26922530989536e-05!GO:0005764;lysosome;3.26922530989536e-05!GO:0007249;I-kappaB kinase/NF-kappaB cascade;3.27430048750072e-05!GO:0016853;isomerase activity;3.96379833273553e-05!GO:0031252;leading edge;4.2611257222092e-05!GO:0005839;proteasome core complex (sensu Eukaryota);4.38707287621483e-05!GO:0006082;organic acid metabolic process;4.88388264262384e-05!GO:0048475;coated membrane;5.15730284706244e-05!GO:0030117;membrane coat;5.15730284706244e-05!GO:0006754;ATP biosynthetic process;5.32977497254309e-05!GO:0006753;nucleoside phosphate metabolic process;5.32977497254309e-05!GO:0044440;endosomal part;5.32977497254309e-05!GO:0010008;endosome membrane;5.32977497254309e-05!GO:0019752;carboxylic acid metabolic process;5.89697224724603e-05!GO:0005762;mitochondrial large ribosomal subunit;6.05938965190039e-05!GO:0000315;organellar large ribosomal subunit;6.05938965190039e-05!GO:0005770;late endosome;7.18492312220174e-05!GO:0030036;actin cytoskeleton organization and biogenesis;7.86725764676341e-05!GO:0006888;ER to Golgi vesicle-mediated transport;8.18754026280269e-05!GO:0050794;regulation of cellular process;8.30614954502493e-05!GO:0045333;cellular respiration;9.6641386551799e-05!GO:0046474;glycerophospholipid biosynthetic process;0.000100685119299173!GO:0006979;response to oxidative stress;0.000101069842882892!GO:0019867;outer membrane;0.000102304279109485!GO:0005791;rough endoplasmic reticulum;0.000104216312359779!GO:0031968;organelle outer membrane;0.00011092187741183!GO:0031965;nuclear membrane;0.000116735078352904!GO:0003924;GTPase activity;0.000121626243174597!GO:0006793;phosphorus metabolic process;0.00012447479546459!GO:0006796;phosphate metabolic process;0.00012447479546459!GO:0016023;cytoplasmic membrane-bound vesicle;0.000129014224160596!GO:0015077;monovalent inorganic cation transmembrane transporter activity;0.000132208307454445!GO:0000139;Golgi membrane;0.00013514723797664!GO:0006752;group transfer coenzyme metabolic process;0.000136005905042569!GO:0016469;proton-transporting two-sector ATPase complex;0.000137132862855422!GO:0046467;membrane lipid biosynthetic process;0.000143948168410614!GO:0033116;ER-Golgi intermediate compartment membrane;0.000156030916962477!GO:0003713;transcription coactivator activity;0.000157265585992836!GO:0008565;protein transporter activity;0.00015765463744314!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.000165235930702991!GO:0051329;interphase of mitotic cell cycle;0.000174329440025152!GO:0005667;transcription factor complex;0.000184563733449271!GO:0016310;phosphorylation;0.000190379216136697!GO:0051187;cofactor catabolic process;0.00019075615063465!GO:0016772;transferase activity, transferring phosphorus-containing groups;0.000210766773623635!GO:0031988;membrane-bound vesicle;0.000215044277765262!GO:0005905;coated pit;0.000218057749842383!GO:0009892;negative regulation of metabolic process;0.000227446917288904!GO:0048518;positive regulation of biological process;0.000230794788008157!GO:0019899;enzyme binding;0.000299153996826588!GO:0065002;intracellular protein transport across a membrane;0.000299933375915227!GO:0005741;mitochondrial outer membrane;0.000315632909669384!GO:0006790;sulfur metabolic process;0.000316401872742388!GO:0006084;acetyl-CoA metabolic process;0.000318170863742523!GO:0016607;nuclear speck;0.000333007744664296!GO:0006099;tricarboxylic acid cycle;0.000333007744664296!GO:0046356;acetyl-CoA catabolic process;0.000333007744664296!GO:0051789;response to protein stimulus;0.00041293242049141!GO:0006986;response to unfolded protein;0.00041293242049141!GO:0051325;interphase;0.000415325175599543!GO:0016779;nucleotidyltransferase activity;0.000444163220090414!GO:0030867;rough endoplasmic reticulum membrane;0.00046235959459407!GO:0016481;negative regulation of transcription;0.00046887212673649!GO:0044453;nuclear membrane part;0.000509410674467419!GO:0009109;coenzyme catabolic process;0.000514309924089179!GO:0005774;vacuolar membrane;0.000544286392391275!GO:0006364;rRNA processing;0.000544286392391275!GO:0030029;actin filament-based process;0.000589203345771531!GO:0000786;nucleosome;0.000606813767615159!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.000616816085811528!GO:0032446;protein modification by small protein conjugation;0.000674165376354417!GO:0042623;ATPase activity, coupled;0.000687520220725009!GO:0006974;response to DNA damage stimulus;0.00077746154871371!GO:0016567;protein ubiquitination;0.000786119861940146!GO:0007243;protein kinase cascade;0.000810161522016984!GO:0005048;signal sequence binding;0.000810926781932598!GO:0031410;cytoplasmic vesicle;0.000878866332597793!GO:0044427;chromosomal part;0.000912562570341283!GO:0006606;protein import into nucleus;0.000924760781076981!GO:0015980;energy derivation by oxidation of organic compounds;0.000928329841781275!GO:0004298;threonine endopeptidase activity;0.000934814925112386!GO:0040008;regulation of growth;0.000987037971740651!GO:0031982;vesicle;0.000993215931529457!GO:0016072;rRNA metabolic process;0.00100245620171267!GO:0051170;nuclear import;0.00104815592596433!GO:0043623;cellular protein complex assembly;0.0011109334415014!GO:0051427;hormone receptor binding;0.00112627918082394!GO:0022403;cell cycle phase;0.00113454897885527!GO:0030132;clathrin coat of coated pit;0.00114149378121107!GO:0006520;amino acid metabolic process;0.00115488294285806!GO:0006778;porphyrin metabolic process;0.00116989592216826!GO:0033013;tetrapyrrole metabolic process;0.00116989592216826!GO:0005769;early endosome;0.00121051892672637!GO:0016787;hydrolase activity;0.0012896701493635!GO:0045792;negative regulation of cell size;0.00130259424573343!GO:0030308;negative regulation of cell growth;0.00133890061404579!GO:0009719;response to endogenous stimulus;0.00133890061404579!GO:0065009;regulation of a molecular function;0.00139074237688644!GO:0044437;vacuolar part;0.0014265703594533!GO:0007006;mitochondrial membrane organization and biogenesis;0.0014265703594533!GO:0016126;sterol biosynthetic process;0.0014725320158509!GO:0016887;ATPase activity;0.00148200860662902!GO:0031227;intrinsic to endoplasmic reticulum membrane;0.0014836926692404!GO:0016568;chromatin modification;0.00148969864535428!GO:0000245;spliceosome assembly;0.00153366023736305!GO:0045941;positive regulation of transcription;0.00156231649806455!GO:0046489;phosphoinositide biosynthetic process;0.00156753125427691!GO:0000151;ubiquitin ligase complex;0.00156753125427691!GO:0008250;oligosaccharyl transferase complex;0.00156753125427691!GO:0003697;single-stranded DNA binding;0.001591676017783!GO:0007050;cell cycle arrest;0.00160573655389629!GO:0015630;microtubule cytoskeleton;0.00164163599804298!GO:0016859;cis-trans isomerase activity;0.00166739608869842!GO:0000314;organellar small ribosomal subunit;0.00170280916507151!GO:0005763;mitochondrial small ribosomal subunit;0.00170280916507151!GO:0045935;positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.00170917565592481!GO:0006118;electron transport;0.00171615365045842!GO:0006066;alcohol metabolic process;0.00171780061300932!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.00189201036453416!GO:0035257;nuclear hormone receptor binding;0.00189921955295921!GO:0009165;nucleotide biosynthetic process;0.00194682356939407!GO:0005765;lysosomal membrane;0.00195766056536755!GO:0003899;DNA-directed RNA polymerase activity;0.00202599469307778!GO:0007067;mitosis;0.00206690721036133!GO:0019843;rRNA binding;0.00208561585444237!GO:0030133;transport vesicle;0.00208910602759607!GO:0031301;integral to organelle membrane;0.0021152606539198!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.0021644209794569!GO:0015399;primary active transmembrane transporter activity;0.0021644209794569!GO:0050789;regulation of biological process;0.00219987776646384!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.0022492423429484!GO:0015002;heme-copper terminal oxidase activity;0.0022492423429484!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.0022492423429484!GO:0004129;cytochrome-c oxidase activity;0.0022492423429484!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;0.00224973647922017!GO:0031902;late endosome membrane;0.00224973647922017!GO:0008637;apoptotic mitochondrial changes;0.00226825286619884!GO:0043284;biopolymer biosynthetic process;0.00227141185699033!GO:0000087;M phase of mitotic cell cycle;0.00234102306769697!GO:0006357;regulation of transcription from RNA polymerase II promoter;0.0024994413294204!GO:0016627;oxidoreductase activity, acting on the CH-CH group of donors;0.00251746348192985!GO:0048468;cell development;0.00263318128034006!GO:0043488;regulation of mRNA stability;0.00283221348387574!GO:0043487;regulation of RNA stability;0.00283221348387574!GO:0006779;porphyrin biosynthetic process;0.0028626423113445!GO:0033014;tetrapyrrole biosynthetic process;0.0028626423113445!GO:0051920;peroxiredoxin activity;0.00304035452941825!GO:0008632;apoptotic program;0.00320866428568047!GO:0018196;peptidyl-asparagine modification;0.0032244824429024!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.0032244824429024!GO:0043681;protein import into mitochondrion;0.00367270969744916!GO:0016125;sterol metabolic process;0.00380552407506229!GO:0005885;Arp2/3 protein complex;0.00385211440437485!GO:0005813;centrosome;0.00386077956389549!GO:0006807;nitrogen compound metabolic process;0.00388319797574255!GO:0051045;negative regulation of membrane protein ectodomain proteolysis;0.00395774373069529!GO:0051043;regulation of membrane protein ectodomain proteolysis;0.00395774373069529!GO:0045926;negative regulation of growth;0.00397808689826373!GO:0005798;Golgi-associated vesicle;0.00404099567161036!GO:0006260;DNA replication;0.0041162833669401!GO:0044255;cellular lipid metabolic process;0.00412289122677905!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.00426849365346318!GO:0042168;heme metabolic process;0.00431022893848417!GO:0005694;chromosome;0.00436160979484872!GO:0006740;NADPH regeneration;0.00438251539381855!GO:0006098;pentose-phosphate shunt;0.00438251539381855!GO:0042158;lipoprotein biosynthetic process;0.00438251539381855!GO:0006626;protein targeting to mitochondrion;0.00535119319780993!GO:0045893;positive regulation of transcription, DNA-dependent;0.00545097672231344!GO:0007040;lysosome organization and biogenesis;0.00561591978112388!GO:0006509;membrane protein ectodomain proteolysis;0.00573432889696791!GO:0033619;membrane protein proteolysis;0.00573432889696791!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00581586798241379!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00581586798241379!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00581586798241379!GO:0046483;heterocycle metabolic process;0.00591193797516739!GO:0045892;negative regulation of transcription, DNA-dependent;0.00599662383298715!GO:0005815;microtubule organizing center;0.00617205572722757!GO:0017166;vinculin binding;0.00617205572722757!GO:0009967;positive regulation of signal transduction;0.00620615111657766!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.00626152186459296!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.00636236561159217!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.00636236561159217!GO:0006595;polyamine metabolic process;0.00668103427373185!GO:0006497;protein amino acid lipidation;0.00678772913637603!GO:0009308;amine metabolic process;0.00700694210236613!GO:0005525;GTP binding;0.00733001967815331!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;0.00736670960250298!GO:0019318;hexose metabolic process;0.00738661007967636!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.00738661007967636!GO:0042802;identical protein binding;0.007412851424267!GO:0043065;positive regulation of apoptosis;0.00753926568833193!GO:0004576;oligosaccharyl transferase activity;0.00755455606179365!GO:0001836;release of cytochrome c from mitochondria;0.00765777827017076!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.00767734888355059!GO:0043068;positive regulation of programmed cell death;0.00784832321629424!GO:0051301;cell division;0.00788278180735294!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;0.00788278180735294!GO:0006650;glycerophospholipid metabolic process;0.00815812648044024!GO:0000307;cyclin-dependent protein kinase holoenzyme complex;0.00846580406380733!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.00895253855987553!GO:0006414;translational elongation;0.00910364942579136!GO:0005975;carbohydrate metabolic process;0.00925347058606882!GO:0030118;clathrin coat;0.00942128961383336!GO:0030145;manganese ion binding;0.00947728438152047!GO:0006839;mitochondrial transport;0.00957817961377004!GO:0005996;monosaccharide metabolic process;0.00964476023473163!GO:0006506;GPI anchor biosynthetic process;0.00969353810728859!GO:0001726;ruffle;0.00974838511284388!GO:0043021;ribonucleoprotein binding;0.00990983552695197!GO:0016860;intramolecular oxidoreductase activity;0.0102135191763836!GO:0030041;actin filament polymerization;0.0102801487508492!GO:0031272;regulation of pseudopodium formation;0.0105641900050569!GO:0031269;pseudopodium formation;0.0105641900050569!GO:0031344;regulation of cell projection organization and biogenesis;0.0105641900050569!GO:0031268;pseudopodium organization and biogenesis;0.0105641900050569!GO:0031346;positive regulation of cell projection organization and biogenesis;0.0105641900050569!GO:0031274;positive regulation of pseudopodium formation;0.0105641900050569!GO:0006783;heme biosynthetic process;0.0106051775644318!GO:0016044;membrane organization and biogenesis;0.0106051775644318!GO:0008652;amino acid biosynthetic process;0.0110582401746053!GO:0016706;oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors;0.011575533026069!GO:0045936;negative regulation of phosphate metabolic process;0.0116154484425757!GO:0006749;glutathione metabolic process;0.0116985846411771!GO:0046930;pore complex;0.011745248758904!GO:0007033;vacuole organization and biogenesis;0.0118212207793905!GO:0004364;glutathione transferase activity;0.0119245008696003!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.0120276072049667!GO:0004177;aminopeptidase activity;0.0121374059525513!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.0124001666200446!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.0125434228709113!GO:0006818;hydrogen transport;0.0125434228709113!GO:0022890;inorganic cation transmembrane transporter activity;0.0127341495357112!GO:0006739;NADP metabolic process;0.0127341495357112!GO:0006695;cholesterol biosynthetic process;0.0127341495357112!GO:0015992;proton transport;0.0127341495357112!GO:0030880;RNA polymerase complex;0.012745606649982!GO:0031300;intrinsic to organelle membrane;0.0128159229502521!GO:0007010;cytoskeleton organization and biogenesis;0.0131080559073665!GO:0006281;DNA repair;0.0134847507972119!GO:0000082;G1/S transition of mitotic cell cycle;0.0138886018754442!GO:0043492;ATPase activity, coupled to movement of substances;0.0139728838110524!GO:0051252;regulation of RNA metabolic process;0.0140284879050892!GO:0033559;unsaturated fatty acid metabolic process;0.0142156196198203!GO:0006636;unsaturated fatty acid biosynthetic process;0.0142156196198203!GO:0050662;coenzyme binding;0.0144241074156175!GO:0006289;nucleotide-excision repair;0.0146002390969949!GO:0048037;cofactor binding;0.0146752660266374!GO:0000096;sulfur amino acid metabolic process;0.0149031249836962!GO:0005643;nuclear pore;0.0149794444894153!GO:0008286;insulin receptor signaling pathway;0.0152046535331364!GO:0035035;histone acetyltransferase binding;0.0152046535331364!GO:0006505;GPI anchor metabolic process;0.0154715442931799!GO:0006643;membrane lipid metabolic process;0.0162206244926606!GO:0006613;cotranslational protein targeting to membrane;0.0163481839952544!GO:0006629;lipid metabolic process;0.017272707237785!GO:0006984;ER-nuclear signaling pathway;0.0175269091696043!GO:0048144;fibroblast proliferation;0.0177668005762577!GO:0048145;regulation of fibroblast proliferation;0.0177668005762577!GO:0008243;plasminogen activator activity;0.017921688936041!GO:0046519;sphingoid metabolic process;0.0182268437450571!GO:0030659;cytoplasmic vesicle membrane;0.0188971219076137!GO:0030027;lamellipodium;0.0191312898123231!GO:0007264;small GTPase mediated signal transduction;0.0200817769692972!GO:0048487;beta-tubulin binding;0.0201674224390459!GO:0005581;collagen;0.0202449075475463!GO:0016281;eukaryotic translation initiation factor 4F complex;0.0203686984269973!GO:0030125;clathrin vesicle coat;0.0205695305503483!GO:0030665;clathrin coated vesicle membrane;0.0205695305503483!GO:0008092;cytoskeletal protein binding;0.0208645781607163!GO:0032561;guanyl ribonucleotide binding;0.0208645781607163!GO:0019001;guanyl nucleotide binding;0.0208645781607163!GO:0006733;oxidoreduction coenzyme metabolic process;0.0209800438283279!GO:0006519;amino acid and derivative metabolic process;0.0213605201655067!GO:0006402;mRNA catabolic process;0.0223886888621303!GO:0006354;RNA elongation;0.0225801556755749!GO:0051348;negative regulation of transferase activity;0.0226463467245715!GO:0030119;AP-type membrane coat adaptor complex;0.0226463467245715!GO:0030663;COPI coated vesicle membrane;0.0226463467245715!GO:0030126;COPI vesicle coat;0.0226463467245715!GO:0000030;mannosyltransferase activity;0.0226944392902507!GO:0008154;actin polymerization and/or depolymerization;0.0227584683610617!GO:0001953;negative regulation of cell-matrix adhesion;0.0235079761644385!GO:0008026;ATP-dependent helicase activity;0.0238291914541137!GO:0005852;eukaryotic translation initiation factor 3 complex;0.0239426758433587!GO:0030137;COPI-coated vesicle;0.0239426758433587!GO:0006917;induction of apoptosis;0.0239887224178011!GO:0051287;NAD binding;0.0242561265473278!GO:0042157;lipoprotein metabolic process;0.0243850127762866!GO:0007346;regulation of progression through mitotic cell cycle;0.0243850127762866!GO:0008203;cholesterol metabolic process;0.0244735872569412!GO:0005862;muscle thin filament tropomyosin;0.0244735872569412!GO:0030503;regulation of cell redox homeostasis;0.0246809807386148!GO:0006950;response to stress;0.0247044440583034!GO:0006383;transcription from RNA polymerase III promoter;0.0250783816745684!GO:0033673;negative regulation of kinase activity;0.0252093338723918!GO:0006469;negative regulation of protein kinase activity;0.0252093338723918!GO:0032981;mitochondrial respiratory chain complex I assembly;0.0252093338723918!GO:0010257;NADH dehydrogenase complex assembly;0.0252093338723918!GO:0033108;mitochondrial respiratory chain complex assembly;0.0252093338723918!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.0252093338723918!GO:0000428;DNA-directed RNA polymerase complex;0.0252093338723918!GO:0043566;structure-specific DNA binding;0.0259508998905439!GO:0015631;tubulin binding;0.0261943823708418!GO:0022408;negative regulation of cell-cell adhesion;0.0264053931340307!GO:0005684;U2-dependent spliceosome;0.026507813866452!GO:0008139;nuclear localization sequence binding;0.0265281850193761!GO:0043433;negative regulation of transcription factor activity;0.0276187786709269!GO:0051716;cellular response to stimulus;0.0278219346644933!GO:0031202;RNA splicing factor activity, transesterification mechanism;0.0283964106395122!GO:0040029;regulation of gene expression, epigenetic;0.0285579839802055!GO:0042326;negative regulation of phosphorylation;0.0286620931567346!GO:0000288;mRNA catabolic process, deadenylation-dependent decay;0.0289297075955226!GO:0012502;induction of programmed cell death;0.0295967970841547!GO:0003756;protein disulfide isomerase activity;0.0295967970841547!GO:0016864;intramolecular oxidoreductase activity, transposing S-S bonds;0.0295967970841547!GO:0016667;oxidoreductase activity, acting on sulfur group of donors;0.0301403313188976!GO:0017015;regulation of transforming growth factor beta receptor signaling pathway;0.0303561660535341!GO:0003746;translation elongation factor activity;0.0310041609887667!GO:0031543;peptidyl-proline dioxygenase activity;0.0310314639545538!GO:0030658;transport vesicle membrane;0.0314641261372739!GO:0008033;tRNA processing;0.0319678102376307!GO:0019205;nucleobase, nucleoside, nucleotide kinase activity;0.0320248401357515!GO:0030508;thiol-disulfide exchange intermediate activity;0.0323134996968825!GO:0000079;regulation of cyclin-dependent protein kinase activity;0.0327852870173043!GO:0030131;clathrin adaptor complex;0.0328378574800199!GO:0005869;dynactin complex;0.0329417973007956!GO:0031529;ruffle organization and biogenesis;0.033067415259845!GO:0004860;protein kinase inhibitor activity;0.0331684046720611!GO:0030128;clathrin coat of endocytic vesicle;0.0334412538849514!GO:0030669;clathrin-coated endocytic vesicle membrane;0.0334412538849514!GO:0030122;AP-2 adaptor complex;0.0334412538849514!GO:0030433;ER-associated protein catabolic process;0.0336853517065185!GO:0006515;misfolded or incompletely synthesized protein catabolic process;0.0336853517065185!GO:0006013;mannose metabolic process;0.0338105772908989!GO:0030031;cell projection biogenesis;0.0344926945133592!GO:0008538;proteasome activator activity;0.0346234239306338!GO:0006458;'de novo' protein folding;0.0346234239306338!GO:0051084;'de novo' posttranslational protein folding;0.0346234239306338!GO:0050790;regulation of catalytic activity;0.0348263323890768!GO:0006368;RNA elongation from RNA polymerase II promoter;0.0352964460678331!GO:0048146;positive regulation of fibroblast proliferation;0.0359880043594599!GO:0016272;prefoldin complex;0.0361684835385149!GO:0004674;protein serine/threonine kinase activity;0.0368578979431469!GO:0005100;Rho GTPase activator activity;0.0380442978165567!GO:0046426;negative regulation of JAK-STAT cascade;0.0380442978165567!GO:0031072;heat shock protein binding;0.0382207454857892!GO:0019798;procollagen-proline dioxygenase activity;0.038261043932701!GO:0030833;regulation of actin filament polymerization;0.0386556785882361!GO:0008283;cell proliferation;0.0389039634053723!GO:0051128;regulation of cellular component organization and biogenesis;0.0389985667729987!GO:0008047;enzyme activator activity;0.0393233853303284!GO:0006612;protein targeting to membrane;0.0397865002472183!GO:0043071;positive regulation of non-apoptotic programmed cell death;0.0404733780266603!GO:0019206;nucleoside kinase activity;0.0404733780266603!GO:0045334;clathrin-coated endocytic vesicle;0.0405271592654304!GO:0005099;Ras GTPase activator activity;0.0405271592654304!GO:0004386;helicase activity;0.0408143421748617!GO:0006672;ceramide metabolic process;0.0414776162684318!GO:0000049;tRNA binding;0.0418187740012211!GO:0006769;nicotinamide metabolic process;0.0419799054839089!GO:0050178;phenylpyruvate tautomerase activity;0.0423245297541733!GO:0030032;lamellipodium biogenesis;0.0425360710529877!GO:0003724;RNA helicase activity;0.0425678053894654!GO:0035258;steroid hormone receptor binding;0.0426006483139477!GO:0051087;chaperone binding;0.0427155848162952!GO:0001872;zymosan binding;0.0443633608122806!GO:0001878;response to yeast;0.0443633608122806!GO:0048471;perinuclear region of cytoplasm;0.0443647090317187!GO:0051775;response to redox state;0.0448990010916625!GO:0006980;redox signal response;0.0448990010916625!GO:0006007;glucose catabolic process;0.0452470493156069!GO:0046979;TAP2 binding;0.0453528274353044!GO:0046977;TAP binding;0.0453528274353044!GO:0046978;TAP1 binding;0.0453528274353044!GO:0065007;biological regulation;0.0460174619188961!GO:0000209;protein polyubiquitination;0.0479682113889657!GO:0051059;NF-kappaB binding;0.0488146788687445!GO:0032507;maintenance of cellular protein localization;0.0490475058024385!GO:0044433;cytoplasmic vesicle part;0.049131373947992!GO:0051235;maintenance of localization;0.0492911284435406!GO:0050811;GABA receptor binding;0.0495672043347754!GO:0051101;regulation of DNA binding;0.0495672043347754 | |||
|sample_id=11667 | |sample_id=11667 | ||
|sample_note= | |sample_note= | ||
| Line 76: | Line 105: | ||
|sample_tissue=lymph node | |sample_tissue=lymph node | ||
|top_motifs=ZNF423:2.901588148;RXRA_VDR{dimer}:2.46384965238;EBF1:2.35255061591;ESR1:2.35114294738;ZNF238:2.14811959929;TFCP2:2.1403599166;TFAP4:2.13641757572;TAL1_TCF{3,4,12}:2.01067717652;GLI1..3:1.93626595955;RXR{A,B,G}:1.77686592221;GTF2A1,2:1.75720030873;HES1:1.75590850805;NR5A1,2:1.66327169919;ESRRA:1.51167987681;GZF1:1.44750183429;ZNF148:1.33358112473;TFAP2{A,C}:1.28976947899;ZBTB6:1.27571029567;NR3C1:1.15190987606;SRF:1.1024352751;TOPORS:1.06882104409;TLX1..3_NFIC{dimer}:1.06805268599;IKZF1:1.03644091037;SPZ1:1.01402249418;XCPE1{core}:1.00736220909;NR6A1:0.963574503289;MAFB:0.958447779419;RREB1:0.917950094868;HOX{A5,B5}:0.91476447698;PBX1:0.870045654099;bHLH_family:0.850232827634;TP53:0.832468678206;TEAD1:0.790931582368;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.736897780086;MTF1:0.732806106359;GTF2I:0.703230256168;PPARG:0.700972963714;TBX4,5:0.687599540542;AR:0.673290772367;NFE2L1:0.66881013668;LHX3,4:0.66483897917;TFAP2B:0.660838199019;ZIC1..3:0.65746785501;STAT2,4,6:0.650062719022;HAND1,2:0.64003107087;CEBPA,B_DDIT3:0.629405556042;NANOG{mouse}:0.622946776066;GFI1B:0.587034623522;PATZ1:0.57616917695;LMO2:0.563104690802;POU2F1..3:0.498261112574;NFE2L2:0.471007305999;ALX4:0.420642404043;SP1:0.365761016354;REST:0.343673779;HLF:0.339384663821;PAX1,9:0.333212611729;HMX1:0.326558409634;UFEwm:0.297688557801;TBP:0.291506531572;NKX2-2,8:0.278590968787;NKX3-1:0.272589327069;HNF4A_NR2F1,2:0.238768585617;HIC1:0.229441072845;KLF4:0.22531794413;HOX{A6,A7,B6,B7}:0.204306566683;HNF1A:0.184106392944;FOS_FOS{B,L1}_JUN{B,D}:0.165132630623;NFKB1_REL_RELA:0.159531190605;NFE2:0.114307519094;ATF6:0.111851703679;BACH2:0.0718347959316;LEF1_TCF7_TCF7L1,2:0.0682130229185;MZF1:0.0178617611016;SMAD1..7,9:0.0145911579812;PAX5:0.0048287999907;NKX2-3_NKX2-5:-0.00841714053591;GCM1,2:-0.00980772471555;SOX17:-0.0197888005634;STAT5{A,B}:-0.0199167623434;MTE{core}:-0.0373414897694;FOSL2:-0.0396675995529;ONECUT1,2:-0.0587967766513;YY1:-0.0906078864452;PAX8:-0.103349334317;MYFfamily:-0.103805430488;POU6F1:-0.135141423698;NHLH1,2:-0.167839305644;RUNX1..3:-0.174369507847;TLX2:-0.177423756854;DBP:-0.210663117935;EN1,2:-0.211265415803;MAZ:-0.212725859508;CRX:-0.228300639884;NKX3-2:-0.234382652544;T:-0.236481577489;NR1H4:-0.237089505237;GATA6:-0.254437660266;ETS1,2:-0.262504116993;NFIL3:-0.269983041289;FOXQ1:-0.280661040968;RFX1:-0.284450897306;NFIX:-0.295400933136;FOX{F1,F2,J1}:-0.313992298314;GFI1:-0.315195228136;FOXL1:-0.330445191153;EGR1..3:-0.358127928358;MEF2{A,B,C,D}:-0.358463954908;HOXA9_MEIS1:-0.360217361478;SOX{8,9,10}:-0.385333933141;SNAI1..3:-0.395157278004;MED-1{core}:-0.401334689603;NANOG:-0.467509425815;POU5F1:-0.468190787333;MYBL2:-0.481279520683;IRF1,2:-0.490789330637;PRDM1:-0.493616963207;SPIB:-0.510004678003;ATF2:-0.547838793566;FOX{D1,D2}:-0.590673203417;JUN:-0.596984954135;NFATC1..3:-0.599649792895;EP300:-0.604971729323;MYOD1:-0.626680260759;XBP1:-0.63259310161;HBP1_HMGB_SSRP1_UBTF:-0.634744247715;CUX2:-0.64402886681;ADNP_IRX_SIX_ZHX:-0.64454844636;PRRX1,2:-0.649876784854;ZEB1:-0.650436147942;HOX{A4,D4}:-0.66963343151;AHR_ARNT_ARNT2:-0.674849958503;PAX2:-0.676181237187;ZNF143:-0.70525695263;ZNF384:-0.709971052513;TEF:-0.712221601028;SOX5:-0.714663402007;SPI1:-0.720864501269;DMAP1_NCOR{1,2}_SMARC:-0.72097731144;HSF1,2:-0.745858666124;RORA:-0.758602320723;POU3F1..4:-0.765580986403;TGIF1:-0.781517744237;MYB:-0.813927051616;HIF1A:-0.815811328627;AIRE:-0.82384998643;PAX3,7:-0.895271153187;IRF7:-0.905234565806;NFY{A,B,C}:-0.923811543868;VSX1,2:-0.956349881077;TFDP1:-0.967289770133;FOXM1:-0.969953890684;SREBF1,2:-1.0288920666;E2F1..5:-1.0320772725;PITX1..3:-1.07366404572;ARID5B:-1.07833031925;ZFP161:-1.08665265551;ATF4:-1.09037934268;FOXD3:-1.09170927385;CDC5L:-1.09586641258;RXR{A,B,G}_{NR1H2,PPAR}dimers:-1.12731781726;OCT4_SOX2{dimer}:-1.12816093699;POU1F1:-1.1454055301;CREB1:-1.14647947413;PAX4:-1.16413250395;FOXP3:-1.21071385391;RFX2..5_RFXANK_RFXAP:-1.21217476475;GATA4:-1.22798557528;SOX2:-1.25465054277;FOXO1,3,4:-1.25469312772;PAX6:-1.31070319363;EVI1:-1.34327008678;ELF1,2,4:-1.38472316004;NKX6-1,2:-1.41257593289;ATF5_CREB3:-1.42094505151;BREu{core}:-1.42118359115;ELK1,4_GABP{A,B1}:-1.43411971269;FOXP1:-1.48824065652;STAT1,3:-1.51138663905;NRF1:-1.54432674501;FOXA2:-1.59560198264;NKX2-1,4:-1.59997799265;BPTF:-1.63251037244;FOX{I1,J2}:-1.84951745952;ALX1:-1.91579076837;CDX1,2,4:-1.95599887485;ZBTB16:-1.9825416189;HMGA1,2:-1.99195851294;FOXN1:-2.00144320617;RBPJ:-2.06760890021;PDX1:-2.16847865111;IKZF2:-2.18835174995 | |top_motifs=ZNF423:2.901588148;RXRA_VDR{dimer}:2.46384965238;EBF1:2.35255061591;ESR1:2.35114294738;ZNF238:2.14811959929;TFCP2:2.1403599166;TFAP4:2.13641757572;TAL1_TCF{3,4,12}:2.01067717652;GLI1..3:1.93626595955;RXR{A,B,G}:1.77686592221;GTF2A1,2:1.75720030873;HES1:1.75590850805;NR5A1,2:1.66327169919;ESRRA:1.51167987681;GZF1:1.44750183429;ZNF148:1.33358112473;TFAP2{A,C}:1.28976947899;ZBTB6:1.27571029567;NR3C1:1.15190987606;SRF:1.1024352751;TOPORS:1.06882104409;TLX1..3_NFIC{dimer}:1.06805268599;IKZF1:1.03644091037;SPZ1:1.01402249418;XCPE1{core}:1.00736220909;NR6A1:0.963574503289;MAFB:0.958447779419;RREB1:0.917950094868;HOX{A5,B5}:0.91476447698;PBX1:0.870045654099;bHLH_family:0.850232827634;TP53:0.832468678206;TEAD1:0.790931582368;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.736897780086;MTF1:0.732806106359;GTF2I:0.703230256168;PPARG:0.700972963714;TBX4,5:0.687599540542;AR:0.673290772367;NFE2L1:0.66881013668;LHX3,4:0.66483897917;TFAP2B:0.660838199019;ZIC1..3:0.65746785501;STAT2,4,6:0.650062719022;HAND1,2:0.64003107087;CEBPA,B_DDIT3:0.629405556042;NANOG{mouse}:0.622946776066;GFI1B:0.587034623522;PATZ1:0.57616917695;LMO2:0.563104690802;POU2F1..3:0.498261112574;NFE2L2:0.471007305999;ALX4:0.420642404043;SP1:0.365761016354;REST:0.343673779;HLF:0.339384663821;PAX1,9:0.333212611729;HMX1:0.326558409634;UFEwm:0.297688557801;TBP:0.291506531572;NKX2-2,8:0.278590968787;NKX3-1:0.272589327069;HNF4A_NR2F1,2:0.238768585617;HIC1:0.229441072845;KLF4:0.22531794413;HOX{A6,A7,B6,B7}:0.204306566683;HNF1A:0.184106392944;FOS_FOS{B,L1}_JUN{B,D}:0.165132630623;NFKB1_REL_RELA:0.159531190605;NFE2:0.114307519094;ATF6:0.111851703679;BACH2:0.0718347959316;LEF1_TCF7_TCF7L1,2:0.0682130229185;MZF1:0.0178617611016;SMAD1..7,9:0.0145911579812;PAX5:0.0048287999907;NKX2-3_NKX2-5:-0.00841714053591;GCM1,2:-0.00980772471555;SOX17:-0.0197888005634;STAT5{A,B}:-0.0199167623434;MTE{core}:-0.0373414897694;FOSL2:-0.0396675995529;ONECUT1,2:-0.0587967766513;YY1:-0.0906078864452;PAX8:-0.103349334317;MYFfamily:-0.103805430488;POU6F1:-0.135141423698;NHLH1,2:-0.167839305644;RUNX1..3:-0.174369507847;TLX2:-0.177423756854;DBP:-0.210663117935;EN1,2:-0.211265415803;MAZ:-0.212725859508;CRX:-0.228300639884;NKX3-2:-0.234382652544;T:-0.236481577489;NR1H4:-0.237089505237;GATA6:-0.254437660266;ETS1,2:-0.262504116993;NFIL3:-0.269983041289;FOXQ1:-0.280661040968;RFX1:-0.284450897306;NFIX:-0.295400933136;FOX{F1,F2,J1}:-0.313992298314;GFI1:-0.315195228136;FOXL1:-0.330445191153;EGR1..3:-0.358127928358;MEF2{A,B,C,D}:-0.358463954908;HOXA9_MEIS1:-0.360217361478;SOX{8,9,10}:-0.385333933141;SNAI1..3:-0.395157278004;MED-1{core}:-0.401334689603;NANOG:-0.467509425815;POU5F1:-0.468190787333;MYBL2:-0.481279520683;IRF1,2:-0.490789330637;PRDM1:-0.493616963207;SPIB:-0.510004678003;ATF2:-0.547838793566;FOX{D1,D2}:-0.590673203417;JUN:-0.596984954135;NFATC1..3:-0.599649792895;EP300:-0.604971729323;MYOD1:-0.626680260759;XBP1:-0.63259310161;HBP1_HMGB_SSRP1_UBTF:-0.634744247715;CUX2:-0.64402886681;ADNP_IRX_SIX_ZHX:-0.64454844636;PRRX1,2:-0.649876784854;ZEB1:-0.650436147942;HOX{A4,D4}:-0.66963343151;AHR_ARNT_ARNT2:-0.674849958503;PAX2:-0.676181237187;ZNF143:-0.70525695263;ZNF384:-0.709971052513;TEF:-0.712221601028;SOX5:-0.714663402007;SPI1:-0.720864501269;DMAP1_NCOR{1,2}_SMARC:-0.72097731144;HSF1,2:-0.745858666124;RORA:-0.758602320723;POU3F1..4:-0.765580986403;TGIF1:-0.781517744237;MYB:-0.813927051616;HIF1A:-0.815811328627;AIRE:-0.82384998643;PAX3,7:-0.895271153187;IRF7:-0.905234565806;NFY{A,B,C}:-0.923811543868;VSX1,2:-0.956349881077;TFDP1:-0.967289770133;FOXM1:-0.969953890684;SREBF1,2:-1.0288920666;E2F1..5:-1.0320772725;PITX1..3:-1.07366404572;ARID5B:-1.07833031925;ZFP161:-1.08665265551;ATF4:-1.09037934268;FOXD3:-1.09170927385;CDC5L:-1.09586641258;RXR{A,B,G}_{NR1H2,PPAR}dimers:-1.12731781726;OCT4_SOX2{dimer}:-1.12816093699;POU1F1:-1.1454055301;CREB1:-1.14647947413;PAX4:-1.16413250395;FOXP3:-1.21071385391;RFX2..5_RFXANK_RFXAP:-1.21217476475;GATA4:-1.22798557528;SOX2:-1.25465054277;FOXO1,3,4:-1.25469312772;PAX6:-1.31070319363;EVI1:-1.34327008678;ELF1,2,4:-1.38472316004;NKX6-1,2:-1.41257593289;ATF5_CREB3:-1.42094505151;BREu{core}:-1.42118359115;ELK1,4_GABP{A,B1}:-1.43411971269;FOXP1:-1.48824065652;STAT1,3:-1.51138663905;NRF1:-1.54432674501;FOXA2:-1.59560198264;NKX2-1,4:-1.59997799265;BPTF:-1.63251037244;FOX{I1,J2}:-1.84951745952;ALX1:-1.91579076837;CDX1,2,4:-1.95599887485;ZBTB16:-1.9825416189;HMGA1,2:-1.99195851294;FOXN1:-2.00144320617;RBPJ:-2.06760890021;PDX1:-2.16847865111;IKZF2:-2.18835174995 | ||
|xref= | |||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11667-122G2;search_select_hide=table117:FF:11667-122G2 | |||
}} | }} | ||
Latest revision as of 18:13, 4 June 2020
| Name: | Fibroblast - Lymphatic, donor3 |
|---|---|
| Species: | Human (Homo sapiens) |
| Library ID: | CNhs12118 |
| Sample type: | primary cells |
| Genomic View: | UCSC |
| RefEX: | Specific genes |
| FANTOM CAT: | 1, 2, 3, 4, 5, 6, 7 |
| CAGEd-oPOSSUM: | link |
| ZENBU report : | link |
| Additional information | ||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Sample information
RNA information
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| CAGE Accession numbers | ||||||||||||||||||||||||||||||||||||||||||||||
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| Download raw sequence, BAM & CTSS | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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| RNA-Seq Accession numbers | ||||||||||||||||||||||||||||||||
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs12118
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs12118
| Novel motif | Logo | P-value |
|---|---|---|
| 1 | 1 | 0.56 |
| 10 | 10 | 0.848 |
| 100 | 100 | 0.821 |
| 101 | 101 | 0.533 |
| 102 | 102 | 0.844 |
| 103 | 103 | 0.262 |
| 104 | 104 | 0.211 |
| 105 | 105 | 0.326 |
| 106 | 106 | 0.0237 |
| 107 | 107 | 0.0346 |
| 108 | 108 | 0.296 |
| 109 | 109 | 0.0495 |
| 11 | 11 | 0.0424 |
| 110 | 110 | 0.239 |
| 111 | 111 | 0.792 |
| 112 | 112 | 0.378 |
| 113 | 113 | 0.327 |
| 114 | 114 | 0.346 |
| 115 | 115 | 0.0484 |
| 116 | 116 | 0.059 |
| 117 | 117 | 0.51 |
| 118 | 118 | 0.808 |
| 119 | 119 | 0.314 |
| 12 | 12 | 0.44 |
| 120 | 120 | 0.716 |
| 121 | 121 | 0.927 |
| 122 | 122 | 0.881 |
| 123 | 123 | 0.316 |
| 124 | 124 | 0.956 |
| 125 | 125 | 0.371 |
| 126 | 126 | 0.747 |
| 127 | 127 | 0.132 |
| 128 | 128 | 0.0864 |
| 129 | 129 | 0.102 |
| 13 | 13 | 0.833 |
| 130 | 130 | 0.186 |
| 131 | 131 | 0.573 |
| 132 | 132 | 0.315 |
| 133 | 133 | 0.942 |
| 134 | 134 | 0.118 |
| 135 | 135 | 0.262 |
| 136 | 136 | 0.659 |
| 137 | 137 | 0.218 |
| 138 | 138 | 0.567 |
| 139 | 139 | 0.115 |
| 14 | 14 | 0.814 |
| 140 | 140 | 0.29 |
| 141 | 141 | 0.385 |
| 142 | 142 | 0.487 |
| 143 | 143 | 0.00912 |
| 144 | 144 | 0.97 |
| 145 | 145 | 0.2 |
| 146 | 146 | 0.292 |
| 147 | 147 | 0.201 |
| 148 | 148 | 0.619 |
| 149 | 149 | 0.0113 |
| 15 | 15 | 0.62 |
| 150 | 150 | 0.24 |
| 151 | 151 | 0.245 |
| 152 | 152 | 0.0407 |
| 153 | 153 | 0.559 |
| 154 | 154 | 0.595 |
| 155 | 155 | 0.647 |
| 156 | 156 | 0.764 |
| 157 | 157 | 0.0975 |
| 158 | 158 | 0.176 |
| 159 | 159 | 0.793 |
| 16 | 16 | 0.0882 |
| 160 | 160 | 0.0451 |
| 161 | 161 | 0.379 |
| 162 | 162 | 0.111 |
| 163 | 163 | 0.455 |
| 164 | 164 | 0.497 |
| 165 | 165 | 0.152 |
| 166 | 166 | 0.414 |
| 167 | 167 | 0.124 |
| 168 | 168 | 0.623 |
| 169 | 169 | 0.0266 |
| 17 | 17 | 0.106 |
| 18 | 18 | 0.0246 |
| 19 | 19 | 0.0757 |
| 2 | 2 | 0.183 |
| 20 | 20 | 0.407 |
| 21 | 21 | 0.207 |
| 22 | 22 | 0.0924 |
| 23 | 23 | 0.172 |
| 24 | 24 | 0.655 |
| 25 | 25 | 0.476 |
| 26 | 26 | 0.0864 |
| 27 | 27 | 0.138 |
| 28 | 28 | 0.251 |
| 29 | 29 | 0.608 |
| 3 | 3 | 0.39 |
| 30 | 30 | 0.218 |
| 31 | 31 | 0.325 |
| 32 | 32 | 1.44809e-8 |
| 33 | 33 | 0.438 |
| 34 | 34 | 0.161 |
| 35 | 35 | 0.842 |
| 36 | 36 | 0.882 |
| 37 | 37 | 0.166 |
| 38 | 38 | 0.409 |
| 39 | 39 | 0.258 |
| 4 | 4 | 0.604 |
| 40 | 40 | 0.0755 |
| 41 | 41 | 0.651 |
| 42 | 42 | 0.74 |
| 43 | 43 | 0.157 |
| 44 | 44 | 0.478 |
| 45 | 45 | 0.312 |
| 46 | 46 | 0.162 |
| 47 | 47 | 0.422 |
| 48 | 48 | 0.258 |
| 49 | 49 | 0.221 |
| 5 | 5 | 0.852 |
| 50 | 50 | 0.296 |
| 51 | 51 | 0.308 |
| 52 | 52 | 0.371 |
| 53 | 53 | 0.986 |
| 54 | 54 | 0.472 |
| 55 | 55 | 0.465 |
| 56 | 56 | 0.304 |
| 57 | 57 | 0.329 |
| 58 | 58 | 0.943 |
| 59 | 59 | 0.0178 |
| 6 | 6 | 0.698 |
| 60 | 60 | 0.162 |
| 61 | 61 | 0.621 |
| 62 | 62 | 0.842 |
| 63 | 63 | 0.185 |
| 64 | 64 | 0.15 |
| 65 | 65 | 0.0423 |
| 66 | 66 | 0.959 |
| 67 | 67 | 0.906 |
| 68 | 68 | 0.0164 |
| 69 | 69 | 0.279 |
| 7 | 7 | 0.993 |
| 70 | 70 | 0.0205 |
| 71 | 71 | 0.233 |
| 72 | 72 | 0.989 |
| 73 | 73 | 0.038 |
| 74 | 74 | 0.721 |
| 75 | 75 | 0.559 |
| 76 | 76 | 0.566 |
| 77 | 77 | 0.0171 |
| 78 | 78 | 0.979 |
| 79 | 79 | 0.0295 |
| 8 | 8 | 0.0636 |
| 80 | 80 | 0.736 |
| 81 | 81 | 0.496 |
| 82 | 82 | 0.183 |
| 83 | 83 | 0.649 |
| 84 | 84 | 0.761 |
| 85 | 85 | 0.0344 |
| 86 | 86 | 0.768 |
| 87 | 87 | 0.143 |
| 88 | 88 | 0.345 |
| 89 | 89 | 0.132 |
| 9 | 9 | 0.143 |
| 90 | 90 | 0.0668 |
| 91 | 91 | 0.281 |
| 92 | 92 | 0.204 |
| 93 | 93 | 0.989 |
| 94 | 94 | 0.323 |
| 95 | 95 | 0.152 |
| 96 | 96 | 0.354 |
| 97 | 97 | 0.516 |
| 98 | 98 | 0.526 |
| 99 | 99 | 0.0183 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs12118
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
EFO:0002091 biological replicate
FF:0000065 human fibroblast of lymphatic vessel sample
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0002320 (connective tissue cell)
0002371 (somatic cell)
0000255 (eukaryotic cell)
0000057 (fibroblast)
0002554 (fibroblast of lymphatic vessel)
UBERON: Anatomy
0000468 (multi-cellular organism)
0002384 (connective tissue)
0000479 (tissue)
0000055 (vessel)
0004111 (anatomical conduit)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0002049 (vasculature)
0007798 (vascular system)
0001473 (lymphatic vessel)
0002465 (lymphoid system)
0004535 (cardiovascular system)
0004536 (lymph vasculature)
0006558 (lymphatic part of lymphoid system)
0002193 (hemolymphoid system)
0002405 (immune system)
0001009 (circulatory system)
FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000057 (fibroblast sample)
0000001 (sample)
0000065 (human fibroblast of lymphatic vessel sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000134 (mesenchymal cell)
