FF:11750-123G4: Difference between revisions
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{{f5samples | {{f5samples | ||
|ancestors_in_anatomy_facet=UBERON: | |DRA_sample_Accession=CAGE@SAMD00005856 | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL: | |accession_numbers=CAGE;DRX008548;DRR009420;DRZ000845;DRZ002230;DRZ012195;DRZ013580 | ||
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0002371,UBERON:0001474,UBERON:0002384,UBERON:0000479,UBERON:0000062,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0004765,UBERON:0010317,UBERON:0002204,UBERON:0001434,UBERON:0002390,UBERON:0002193,UBERON:0002405 | |||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000723,CL:0000048,CL:0000548,CL:0002320,CL:0002371,CL:0000219,CL:0000134,CL:0000255,CL:0000034,CL:0002092,CL:0002540 | |||
|ancestors_in_disease_facet= | |ancestors_in_disease_facet= | ||
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000001,FF:0000269 | |||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|data_phase=2 | |||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score= | |||
|fonse_cell_line= | |fonse_cell_line= | ||
|fonse_cell_line_closure= | |fonse_cell_line_closure= | ||
| Line 35: | Line 42: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/mesenchymal%2520precursor%2520cell%2520-%2520bone%2520marrow%252c%2520donor1.CNhs12366.11750-123G4.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/mesenchymal%2520precursor%2520cell%2520-%2520bone%2520marrow%252c%2520donor1.CNhs12366.11750-123G4.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/mesenchymal%2520precursor%2520cell%2520-%2520bone%2520marrow%252c%2520donor1.CNhs12366.11750-123G4.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/mesenchymal%2520precursor%2520cell%2520-%2520bone%2520marrow%252c%2520donor1.CNhs12366.11750-123G4.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/mesenchymal%2520precursor%2520cell%2520-%2520bone%2520marrow%252c%2520donor1.CNhs12366.11750-123G4.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:11750-123G4 | |id=FF:11750-123G4 | ||
|is_a=EFO:0002091;;FF: | |is_a=EFO:0002091;;FF:0000269 | ||
|is_obsolete= | |||
|library_id=CNhs12366 | |||
|library_id_phase_based=2:CNhs12366 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11750 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11750 | |||
|name=mesenchymal precursor cell - bone marrow, donor1 | |name=mesenchymal precursor cell - bone marrow, donor1 | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
| Line 42: | Line 61: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs12366,LSID914,release011,COMPLETED | |profile_hcage=CNhs12366,LSID914,release011,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=,,, | |profile_srnaseq=,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
|repeat_enrich_byfamily=0,0,0,0,0,0,0,-0.0208148621512551,0,-0.277362132193514,0.0098211414957444,0,0.139503167935131,0,0,0,0,0,0,0,0,0,0.075329031500352,0,-0.0138198424132966,0,0,0,0,0,-0.0226288647677055,0,0,0.00654657815626877,0,0,0,0,0,0,0,0,0,0,0.244923014258208,0,-0.0322232013261856,0,0.075329031500352,0,0,0,0,0,0,-0.0242150211128343,0,0,0,0,0,0.0220950303207039,0,0.0425108066925259,0,0,-0.097343627213097,0,0,0,0,0,0,0,0,0,0,0.075329031500352,0,0,0,0,0,0,0,0,0,0.139503167935131,0,0,0,-0.057353278200867,0,0,0,-0.278480171069955,0.205144628562085,0,0.075329031500352,0.312648562912966,0,-0.0227063197373544,-0.0160156936717911,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0260879132066432,0,0,0,-0.060819961675157,-0.265198630995547,0,0,0,0,0,0 | |||
|repeat_enrich_byname=0,0,0,0,-0.0227063197373544,0,0,0,0,0,0,0,0.139503167935131,0.075329031500352,0,0.075329031500352,-0.0517749289461212,0.0556553201801623,-0.144399983936618,-0.0681861110231199,0,0,0.336935550549976,0,0.244923014258208,0,0,0.432107386858407,0,0.64436512691787,0.489034524240998,0,0.60074252270388,0,0.194510462668893,0,0.139503167935131,0,0,0,0.374687362658003,0,-0.0295734095171886,0.127059685262075,0,0,0,0,0.344166596197297,0,-0.120879483793741,0.0567829996117137,-0.146282556602455,0.200470006007939,-0.055712496781182,0,0,0,0.1709004740467,0.0737864167004345,0,0,0.0229047998804472,0.286170164568363,0,0,1.01435279934502,0,0.526094691435811,-0.0227752261466943,0,0,0,0,0.075329031500352,0,0,0,0,0,0,0,0,0.435019573079999,0.00269763813642193,0,0,0,0,-0.0298122553829059,0,0.0201918204675743,0.18920204637522,0.162475410373547,-0.0923437161564858,-0.492087793788393,0,-0.162886559074782,-0.000166011537416909,-0.433166669351069,-0.293623904591327,0.219174444999871,0.435315406276084,0,0.224211081121639,-0.0277335174005324,-0.0266534973711944,-0.057353278200867,-0.103836095267864,0.372886919333048,0.0309795806164965,0.075329031500352,0,0,-0.021189597764915,0,-0.268311617294559,-0.00108019023577566,0.0404888053897703,-0.246557523877135,-0.246572891444029,-0.0188763016961554,-0.0702836618772655,0.486228834829722,0.315213648260357,0.00962526317036855,0.394420471960602,0,0,-0.0104829017252807,0.0619386548496065,0.074443820425113,-0.476323005243548,0.00436788243944223,-0.0834007861534806,0.17657875318084,0,-0.00388306884406051,-0.152606173189738,0,0.0105908018077729,-0.178200555213912,0,0,0,0,0.139503167935131,-0.0382758605056541,0.15751590701626,-0.157526530055193,0,-0.0074589982740527,0,-0.0626913789773255,0,-0.0443777881354777,0,0,-0.0455477974329408,0,-0.0217285887201184,0.047292320524401,0.12437860692564,-0.0218181297342374,-0.0584468268118252,-0.00160954411928593,-0.145892449418539,-0.137967440732219,0.104184030635481,-0.101364614532639,-0.0127978009749357,0.065191841221883,0.0095791449073277,0.0175099184249015,-0.123232397023407,-0.108261123763156,0.0246530068937613,-0.100297334103339,0,-0.102109516162004,0,-0.0675416535616835,-0.13985707581574,-0.0387126989231861,0.0313817047307241,0,-0.181958650564412,0.757083877588804,0,0.0599908029786806,0.0635693253368984,0,0.281740303523768,-0.0923426350699289,0.296627967637301,0.053223634417475,0,0.358177124745497,0,0.195403946339443,0.332205843333537,0.00944697649381962,0,-0.0715539756786913,-0.177095527354989,-0.0648589884650681,-0.115971073434934,0,0,0.382038666241849,0,0.075329031500352,0.193638821444618,0.266081389677589,-0.330414020693991,-0.0579223951473124,0,0.0867811368851875,0,0.075329031500352,0.111841537299467,0,0.154752077958749,0,0,0.426106388775142,0,0,0,0.562488202331787,0.0050226472709858,0,0,0,0,0,0,0,-0.471899008445011,0.389120859256066,0,0,0,0,0,0,0.075329031500352,0.0551823391363038,0,0.075329031500352,0.789638640829617,0,-0.0476883841760683,0,0,0,0,0.409573723272457,-0.0637333941595927,0.139503167935131,-0.131862706497632,0,0.037664515750176,0,0,-0.0861409897892114,0,0,0,0,-0.057730457053664,-0.147647622478712,0,0,0,-0.0320313873435821,0,0,0.289369303264642,0.0635884053471428,-0.0952256629118882,0,0,0.4535308528955,0,0.0124414634561549,0.284994414824168,0,-0.122425068002962,0.0871207429909333,-0.376329480775324,0,0,-0.186018100289536,0,0.0409453161963974,0.094408695272409,0,0,0,0,0,0,0,0,0.625297125825932,-0.0189105660603123,0.037664515750176,0,0,0,0,0,0,0,0,0,0,0.120589883971261,0.197145246606132,0.075329031500352,0,0,0,0,0,0,0.459921000669294,-0.169827924812589,0,0,0,0,0,0,0,0,-0.141739704847851,0,0,0.139503167935131,0,0,0.0425108066925259,0,0,0,0,0.0196422829914888,0,0,-0.277362132193514,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.123319086035448,-0.316026170027929,0,0,0,0,0,0,0,0.0548529366093004,0,0,0,0,0.252691920662032,0,0,0,-0.104796384789156,0,-0.0208148621512551,0,0,0,0.037664515750176,0,0.075329031500352,0,0,0,0,0,0,0,0,0,0,0,0.0977019731697215,0,0,0,0.456746465993726,0,0.227716736024119,0.0184700853377529,0,0,0.219131271532043,0,0,0,0,0,0,-0.031340424028527,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0391405176298944,0,0,0,0,0.195403946339443,0,0,-0.0226288647677055,0,0,-0.0543682940503502,0,0,0,0,0,0,0.0955996443575456,-0.0257582738246334,0.00244401010440675,0,0,0,0.0153660114851105,0,0,0.0360424650429642,0,0.495710814912886,0,0,0,0,0,0,0,0,0,0,0,0.037664515750176,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0138198424132966,0,0,0,0,0,0,0,0,0,0,0,0,0.0977019731697215,0,0,0,0,0,0,0,0,0,0,0,0,0.075329031500352,0,0.432107386858407,0,0,0,0,0,0,0,-0.0340113632754165,0,0.037664515750176,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.00468943676828638,0,0,0,0.0762830736075986,0,0,0,0,0,0,0.139503167935131,0,0,0,0,0,0,0,0,0,0,0,0,0,0.075329031500352,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.160505852692186,0,0,0,0,0,0,0,0,0.244923014258208,0,0.0337061018049899,0,0,0.0271069562612978,0,-0.0090476007296751,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.193450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| |||
|rna_box=123 | |rna_box=123 | ||
|rna_catalog_number= | |rna_catalog_number= | ||
| Line 57: | Line 79: | ||
|rna_weight_ug=54.738 | |rna_weight_ug=54.738 | ||
|sample_age= | |sample_age= | ||
|sample_category=primary cells | |||
|sample_cell_catalog= | |sample_cell_catalog= | ||
|sample_cell_line= | |sample_cell_line= | ||
| Line 69: | Line 92: | ||
|sample_ethnicity= | |sample_ethnicity= | ||
|sample_experimental_condition= | |sample_experimental_condition= | ||
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;5.69755577466305e-215!GO:0005737;cytoplasm;1.11865263803931e-193!GO:0043226;organelle;1.51091200712311e-165!GO:0043229;intracellular organelle;2.57018156057016e-165!GO:0043231;intracellular membrane-bound organelle;1.54915138032315e-162!GO:0043227;membrane-bound organelle;3.43644462475647e-162!GO:0044444;cytoplasmic part;5.25444459157356e-150!GO:0044422;organelle part;1.71507643773852e-121!GO:0044446;intracellular organelle part;4.40268006927608e-120!GO:0032991;macromolecular complex;4.29579981090428e-85!GO:0005515;protein binding;8.26203697187066e-77!GO:0030529;ribonucleoprotein complex;1.04994569648668e-75!GO:0044238;primary metabolic process;9.13602344431354e-73!GO:0044237;cellular metabolic process;3.32908347505974e-72!GO:0043170;macromolecule metabolic process;9.45744765964868e-66!GO:0005739;mitochondrion;7.34734509139188e-64!GO:0043233;organelle lumen;1.07423592947695e-61!GO:0031974;membrane-enclosed lumen;1.07423592947695e-61!GO:0003723;RNA binding;3.4584871364679e-57!GO:0044428;nuclear part;7.32314995922034e-55!GO:0031090;organelle membrane;1.02278433836798e-52!GO:0005634;nucleus;2.54837727302857e-49!GO:0005840;ribosome;3.14059833878812e-48!GO:0015031;protein transport;1.62352023812508e-46!GO:0019538;protein metabolic process;6.05871389163581e-46!GO:0033036;macromolecule localization;6.21692742950068e-46!GO:0006412;translation;7.07213824940615e-45!GO:0045184;establishment of protein localization;3.93797556403895e-44!GO:0008104;protein localization;1.20972485716771e-43!GO:0003735;structural constituent of ribosome;3.11403487349076e-43!GO:0043234;protein complex;6.05070516538744e-43!GO:0016043;cellular component organization and biogenesis;1.35192214440368e-42!GO:0044429;mitochondrial part;2.19238579267331e-42!GO:0005829;cytosol;1.28741890802893e-41!GO:0044260;cellular macromolecule metabolic process;1.16928715728984e-40!GO:0009058;biosynthetic process;8.28212076249633e-40!GO:0044267;cellular protein metabolic process;2.08983052493162e-39!GO:0006396;RNA processing;1.57766989586338e-38!GO:0033279;ribosomal subunit;2.13490363798099e-37!GO:0009059;macromolecule biosynthetic process;7.55932212597796e-37!GO:0031967;organelle envelope;4.31159878673097e-36!GO:0031975;envelope;1.03795635649284e-35!GO:0044249;cellular biosynthetic process;1.1601851871081e-34!GO:0031981;nuclear lumen;2.58783171159609e-34!GO:0046907;intracellular transport;1.46737898980708e-33!GO:0016071;mRNA metabolic process;1.06088630831449e-31!GO:0010467;gene expression;1.36761701401656e-31!GO:0043283;biopolymer metabolic process;2.30875016798662e-31!GO:0008380;RNA splicing;2.46796531824239e-31!GO:0006886;intracellular protein transport;2.4511792136158e-29!GO:0005740;mitochondrial envelope;1.08173703955471e-28!GO:0005830;cytosolic ribosome (sensu Eukaryota);7.24761458795627e-28!GO:0006397;mRNA processing;7.42422638260859e-28!GO:0031966;mitochondrial membrane;9.62476107889251e-27!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;9.59739324684201e-26!GO:0065003;macromolecular complex assembly;2.13323271998567e-25!GO:0022613;ribonucleoprotein complex biogenesis and assembly;3.00625897151298e-25!GO:0019866;organelle inner membrane;7.51469620007695e-25!GO:0005743;mitochondrial inner membrane;9.23281556420592e-24!GO:0005783;endoplasmic reticulum;1.825452831889e-23!GO:0006119;oxidative phosphorylation;8.58307794555839e-23!GO:0006996;organelle organization and biogenesis;8.58307794555839e-23!GO:0022607;cellular component assembly;1.22255968409528e-22!GO:0043228;non-membrane-bound organelle;1.70093428020654e-22!GO:0043232;intracellular non-membrane-bound organelle;1.70093428020654e-22!GO:0044445;cytosolic part;3.18597650840126e-22!GO:0051649;establishment of cellular localization;4.70115659133841e-22!GO:0051641;cellular localization;6.05188157504338e-22!GO:0005654;nucleoplasm;6.90590493967876e-21!GO:0005681;spliceosome;7.03658960625934e-21!GO:0012505;endomembrane system;7.76674886877348e-21!GO:0006457;protein folding;1.06248030731926e-20!GO:0015935;small ribosomal subunit;1.11522825991039e-19!GO:0048770;pigment granule;3.33870035520248e-19!GO:0042470;melanosome;3.33870035520248e-19!GO:0044455;mitochondrial membrane part;5.64225925069419e-19!GO:0044432;endoplasmic reticulum part;6.33232761592877e-19!GO:0015934;large ribosomal subunit;9.34193937378021e-19!GO:0016462;pyrophosphatase activity;1.56221184631785e-18!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;1.56221184631785e-18!GO:0016817;hydrolase activity, acting on acid anhydrides;2.19624551398249e-18!GO:0005794;Golgi apparatus;1.16598043898518e-17!GO:0017111;nucleoside-triphosphatase activity;1.20893994689669e-17!GO:0008134;transcription factor binding;1.26411503822857e-17!GO:0044451;nucleoplasm part;1.83663331404218e-17!GO:0005746;mitochondrial respiratory chain;4.71124191904184e-17!GO:0031980;mitochondrial lumen;4.94354021764862e-17!GO:0005759;mitochondrial matrix;4.94354021764862e-17!GO:0051186;cofactor metabolic process;6.28084966745135e-17!GO:0022618;protein-RNA complex assembly;8.86766232612588e-17!GO:0000166;nucleotide binding;1.06792998448433e-16!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;3.63451824131873e-16!GO:0000502;proteasome complex (sensu Eukaryota);5.30542106046986e-16!GO:0016874;ligase activity;1.84794798531215e-15!GO:0016192;vesicle-mediated transport;3.92034673223215e-15!GO:0006512;ubiquitin cycle;5.20045934821547e-15!GO:0044265;cellular macromolecule catabolic process;7.99318587955423e-15!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);9.63495858410815e-15!GO:0050136;NADH dehydrogenase (quinone) activity;9.75649040613552e-15!GO:0003954;NADH dehydrogenase activity;9.75649040613552e-15!GO:0008137;NADH dehydrogenase (ubiquinone) activity;9.75649040613552e-15!GO:0048193;Golgi vesicle transport;1.0085916076468e-14!GO:0006605;protein targeting;1.06237561628066e-14!GO:0043285;biopolymer catabolic process;1.11721993401865e-14!GO:0006259;DNA metabolic process;2.16298407796332e-14!GO:0008135;translation factor activity, nucleic acid binding;2.34961775419153e-14!GO:0009057;macromolecule catabolic process;4.01293582062601e-14!GO:0005730;nucleolus;4.0763240706453e-14!GO:0051603;proteolysis involved in cellular protein catabolic process;6.70024516763912e-14!GO:0044248;cellular catabolic process;7.21165757510927e-14!GO:0003676;nucleic acid binding;1.10829867427258e-13!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);1.28856934797216e-13!GO:0019941;modification-dependent protein catabolic process;1.30951792498702e-13!GO:0043632;modification-dependent macromolecule catabolic process;1.30951792498702e-13!GO:0006511;ubiquitin-dependent protein catabolic process;1.56964784082449e-13!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;1.68133824016108e-13!GO:0044257;cellular protein catabolic process;1.80188422056573e-13!GO:0051082;unfolded protein binding;1.95041557458683e-13!GO:0042175;nuclear envelope-endoplasmic reticulum network;2.45170214458476e-13!GO:0030163;protein catabolic process;3.26949234241406e-13!GO:0005793;ER-Golgi intermediate compartment;3.90535906464799e-13!GO:0006732;coenzyme metabolic process;4.67536170255127e-13!GO:0005761;mitochondrial ribosome;5.15091889951804e-13!GO:0000313;organellar ribosome;5.15091889951804e-13!GO:0030964;NADH dehydrogenase complex (quinone);5.33578819410697e-13!GO:0045271;respiratory chain complex I;5.33578819410697e-13!GO:0005747;mitochondrial respiratory chain complex I;5.33578819410697e-13!GO:0042775;organelle ATP synthesis coupled electron transport;5.59231565567641e-13!GO:0042773;ATP synthesis coupled electron transport;5.59231565567641e-13!GO:0005789;endoplasmic reticulum membrane;6.88012236000367e-13!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;1.67054352808646e-12!GO:0016070;RNA metabolic process;4.41425667422414e-12!GO:0017076;purine nucleotide binding;6.70077962164463e-12!GO:0032553;ribonucleotide binding;1.9109640687491e-11!GO:0032555;purine ribonucleotide binding;1.9109640687491e-11!GO:0000398;nuclear mRNA splicing, via spliceosome;2.37046330407775e-11!GO:0000375;RNA splicing, via transesterification reactions;2.37046330407775e-11!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;2.37046330407775e-11!GO:0003743;translation initiation factor activity;2.58707038628269e-11!GO:0012501;programmed cell death;3.58983858387503e-11!GO:0005768;endosome;5.27149172569395e-11!GO:0043412;biopolymer modification;5.2750146867322e-11!GO:0006163;purine nucleotide metabolic process;5.2750146867322e-11!GO:0006915;apoptosis;6.31616896610531e-11!GO:0003712;transcription cofactor activity;6.95465233462826e-11!GO:0009055;electron carrier activity;8.42455668587981e-11!GO:0006413;translational initiation;8.55607917626276e-11!GO:0009259;ribonucleotide metabolic process;8.7081885657906e-11!GO:0009150;purine ribonucleotide metabolic process;8.93717930773149e-11!GO:0007049;cell cycle;1.03049288142017e-10!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;1.03049288142017e-10!GO:0009141;nucleoside triphosphate metabolic process;3.68253578767915e-10!GO:0009199;ribonucleoside triphosphate metabolic process;4.15698722933414e-10!GO:0009205;purine ribonucleoside triphosphate metabolic process;5.35310987070434e-10!GO:0009144;purine nucleoside triphosphate metabolic process;5.35310987070434e-10!GO:0008219;cell death;5.5583416479702e-10!GO:0016265;death;5.5583416479702e-10!GO:0006164;purine nucleotide biosynthetic process;5.5583416479702e-10!GO:0009152;purine ribonucleotide biosynthetic process;9.4862097354476e-10!GO:0006464;protein modification process;9.5638375560928e-10!GO:0048523;negative regulation of cellular process;1.01972810929286e-09!GO:0045333;cellular respiration;1.12510083662097e-09!GO:0005773;vacuole;1.27089446866999e-09!GO:0042254;ribosome biogenesis and assembly;1.4481630893128e-09!GO:0016604;nuclear body;1.60832877282493e-09!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;2.01635538395056e-09!GO:0016491;oxidoreductase activity;2.42294864363802e-09!GO:0009260;ribonucleotide biosynthetic process;2.45949524863484e-09!GO:0006446;regulation of translational initiation;3.28413896780418e-09!GO:0009060;aerobic respiration;3.31252909490373e-09!GO:0015986;ATP synthesis coupled proton transport;4.32918801659867e-09!GO:0015985;energy coupled proton transport, down electrochemical gradient;4.32918801659867e-09!GO:0046034;ATP metabolic process;5.47670439397171e-09!GO:0006974;response to DNA damage stimulus;6.08249948499e-09!GO:0003924;GTPase activity;6.2885892987817e-09!GO:0009142;nucleoside triphosphate biosynthetic process;7.12303696820273e-09!GO:0009201;ribonucleoside triphosphate biosynthetic process;7.12303696820273e-09!GO:0008639;small protein conjugating enzyme activity;8.52986735945169e-09!GO:0031965;nuclear membrane;9.03061446433609e-09!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;9.08028508314469e-09!GO:0009145;purine nucleoside triphosphate biosynthetic process;9.08028508314469e-09!GO:0009056;catabolic process;9.72881498822333e-09!GO:0006461;protein complex assembly;9.72881498822333e-09!GO:0005635;nuclear envelope;1.08956185242879e-08!GO:0019787;small conjugating protein ligase activity;1.35689506681833e-08!GO:0030554;adenyl nucleotide binding;1.43507410318976e-08!GO:0004842;ubiquitin-protein ligase activity;1.57113738628335e-08!GO:0019829;cation-transporting ATPase activity;1.62268813372134e-08!GO:0005788;endoplasmic reticulum lumen;1.69221757615277e-08!GO:0005524;ATP binding;1.78583864493428e-08!GO:0006913;nucleocytoplasmic transport;1.98238418802196e-08!GO:0000323;lytic vacuole;1.99861285855857e-08!GO:0005764;lysosome;1.99861285855857e-08!GO:0044440;endosomal part;2.96615677466504e-08!GO:0010008;endosome membrane;2.96615677466504e-08!GO:0032559;adenyl ribonucleotide binding;3.00960268342e-08!GO:0008565;protein transporter activity;3.09398616910994e-08!GO:0006366;transcription from RNA polymerase II promoter;3.47746040186154e-08!GO:0017038;protein import;3.62163927748957e-08!GO:0006888;ER to Golgi vesicle-mediated transport;3.65875903435069e-08!GO:0042623;ATPase activity, coupled;3.6779763796551e-08!GO:0051169;nuclear transport;3.9140535394045e-08!GO:0048519;negative regulation of biological process;3.95128793928068e-08!GO:0016879;ligase activity, forming carbon-nitrogen bonds;4.08439152547701e-08!GO:0016887;ATPase activity;4.21381899254677e-08!GO:0015078;hydrogen ion transmembrane transporter activity;4.82191414437558e-08!GO:0022402;cell cycle process;5.43481268267071e-08!GO:0030120;vesicle coat;6.15570940469559e-08!GO:0030662;coated vesicle membrane;6.15570940469559e-08!GO:0044431;Golgi apparatus part;6.58395101003327e-08!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;6.76582579200587e-08!GO:0016881;acid-amino acid ligase activity;7.48067231817462e-08!GO:0005770;late endosome;7.99200608986886e-08!GO:0006099;tricarboxylic acid cycle;8.08636581618332e-08!GO:0046356;acetyl-CoA catabolic process;8.08636581618332e-08!GO:0006754;ATP biosynthetic process;8.08636581618332e-08!GO:0006753;nucleoside phosphate metabolic process;8.08636581618332e-08!GO:0043687;post-translational protein modification;8.47840474052693e-08!GO:0051188;cofactor biosynthetic process;9.58497584586917e-08!GO:0051246;regulation of protein metabolic process;1.10087748427259e-07!GO:0016607;nuclear speck;1.31959383994844e-07!GO:0051187;cofactor catabolic process;1.42359023398085e-07!GO:0044453;nuclear membrane part;1.58307292206218e-07!GO:0043069;negative regulation of programmed cell death;1.70458422268435e-07!GO:0016469;proton-transporting two-sector ATPase complex;1.85525187143705e-07!GO:0048475;coated membrane;1.85525187143705e-07!GO:0030117;membrane coat;1.85525187143705e-07!GO:0042981;regulation of apoptosis;1.85525187143705e-07!GO:0043066;negative regulation of apoptosis;1.98684477462613e-07!GO:0006091;generation of precursor metabolites and energy;2.2186550089877e-07!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;2.37144378041441e-07!GO:0043067;regulation of programmed cell death;2.42121132952206e-07!GO:0004386;helicase activity;2.59812040650825e-07!GO:0016023;cytoplasmic membrane-bound vesicle;3.05093190896671e-07!GO:0031988;membrane-bound vesicle;3.16046657300746e-07!GO:0006084;acetyl-CoA metabolic process;3.6178453524687e-07!GO:0008026;ATP-dependent helicase activity;3.79501447358649e-07!GO:0006399;tRNA metabolic process;3.81887962931247e-07!GO:0000074;regulation of progression through cell cycle;4.12634890176221e-07!GO:0006916;anti-apoptosis;4.32236266217877e-07!GO:0009109;coenzyme catabolic process;4.32236266217877e-07!GO:0051726;regulation of cell cycle;4.42338916967024e-07!GO:0009719;response to endogenous stimulus;5.68128088104184e-07!GO:0006281;DNA repair;5.73678665418711e-07!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;6.33086598517707e-07!GO:0000278;mitotic cell cycle;7.14505013505323e-07!GO:0031252;leading edge;8.1489852335399e-07!GO:0005839;proteasome core complex (sensu Eukaryota);8.30154529716462e-07!GO:0030532;small nuclear ribonucleoprotein complex;1.02047332946178e-06!GO:0009117;nucleotide metabolic process;1.0356631211125e-06!GO:0031982;vesicle;1.34486807319353e-06!GO:0050794;regulation of cellular process;1.39418246509528e-06!GO:0031410;cytoplasmic vesicle;1.43276599052253e-06!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;1.75979439970004e-06!GO:0004812;aminoacyl-tRNA ligase activity;1.75979439970004e-06!GO:0016875;ligase activity, forming carbon-oxygen bonds;1.75979439970004e-06!GO:0043038;amino acid activation;1.79518457835468e-06!GO:0006418;tRNA aminoacylation for protein translation;1.79518457835468e-06!GO:0043039;tRNA aminoacylation;1.79518457835468e-06!GO:0008361;regulation of cell size;2.47349434226836e-06!GO:0000139;Golgi membrane;3.10980681386973e-06!GO:0016049;cell growth;3.14227017858672e-06!GO:0007249;I-kappaB kinase/NF-kappaB cascade;3.17713116469688e-06!GO:0016564;transcription repressor activity;3.66656674316257e-06!GO:0009108;coenzyme biosynthetic process;3.6948894409648e-06!GO:0045259;proton-transporting ATP synthase complex;3.7368972256422e-06!GO:0043566;structure-specific DNA binding;3.76125069974787e-06!GO:0016853;isomerase activity;4.22467148827838e-06!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;4.29891583913979e-06!GO:0007005;mitochondrion organization and biogenesis;4.36714153958092e-06!GO:0031324;negative regulation of cellular metabolic process;4.53242643588991e-06!GO:0015980;energy derivation by oxidation of organic compounds;4.59118337743257e-06!GO:0006752;group transfer coenzyme metabolic process;4.67815994767515e-06!GO:0003714;transcription corepressor activity;4.89357780117e-06!GO:0000245;spliceosome assembly;5.42458430612249e-06!GO:0065002;intracellular protein transport across a membrane;5.49006815647185e-06!GO:0008654;phospholipid biosynthetic process;5.99782236407821e-06!GO:0005525;GTP binding;6.13263604176227e-06!GO:0015077;monovalent inorganic cation transmembrane transporter activity;6.20380645764816e-06!GO:0005798;Golgi-associated vesicle;6.24717925596703e-06!GO:0004298;threonine endopeptidase activity;6.6444802026086e-06!GO:0006325;establishment and/or maintenance of chromatin architecture;6.75540979072649e-06!GO:0045786;negative regulation of progression through cell cycle;7.1219252517307e-06!GO:0005769;early endosome;7.9857664416879e-06!GO:0006364;rRNA processing;8.16433533712626e-06!GO:0005643;nuclear pore;9.39820400157964e-06!GO:0051170;nuclear import;9.99028324742759e-06!GO:0006613;cotranslational protein targeting to membrane;1.12833067755548e-05!GO:0030133;transport vesicle;1.13896738140531e-05!GO:0001558;regulation of cell growth;1.15496108973899e-05!GO:0003697;single-stranded DNA binding;1.1724358771451e-05!GO:0016072;rRNA metabolic process;1.49387496391875e-05!GO:0032446;protein modification by small protein conjugation;1.54474114320131e-05!GO:0006323;DNA packaging;1.58740717333851e-05!GO:0006606;protein import into nucleus;1.59015657064201e-05!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;1.86143821294018e-05!GO:0009892;negative regulation of metabolic process;1.90680365703973e-05!GO:0051789;response to protein stimulus;2.03641072224202e-05!GO:0006986;response to unfolded protein;2.03641072224202e-05!GO:0003713;transcription coactivator activity;2.05898143311308e-05!GO:0016567;protein ubiquitination;2.21751368061049e-05!GO:0031202;RNA splicing factor activity, transesterification mechanism;2.31751285246632e-05!GO:0016859;cis-trans isomerase activity;2.37166073716157e-05!GO:0019843;rRNA binding;2.78099753883926e-05!GO:0051276;chromosome organization and biogenesis;3.16654988777487e-05!GO:0019867;outer membrane;3.17569209936827e-05!GO:0016787;hydrolase activity;3.24634773549998e-05!GO:0032561;guanyl ribonucleotide binding;3.25195099504494e-05!GO:0019001;guanyl nucleotide binding;3.25195099504494e-05!GO:0044262;cellular carbohydrate metabolic process;3.63134662083115e-05!GO:0030036;actin cytoskeleton organization and biogenesis;3.70016267802375e-05!GO:0031968;organelle outer membrane;3.92684549184486e-05!GO:0016563;transcription activator activity;3.92684549184486e-05!GO:0005762;mitochondrial large ribosomal subunit;4.24744723511515e-05!GO:0000315;organellar large ribosomal subunit;4.24744723511515e-05!GO:0005667;transcription factor complex;4.71129808209081e-05!GO:0030867;rough endoplasmic reticulum membrane;5.71168418358807e-05!GO:0016740;transferase activity;5.72446874737952e-05!GO:0050789;regulation of biological process;5.93535880704691e-05!GO:0007243;protein kinase cascade;6.18487264038223e-05!GO:0016126;sterol biosynthetic process;6.70056921456303e-05!GO:0046930;pore complex;6.99353939951467e-05!GO:0005905;coated pit;7.44635425391911e-05!GO:0045454;cell redox homeostasis;8.58939542260979e-05!GO:0006793;phosphorus metabolic process;9.79690997637777e-05!GO:0006796;phosphate metabolic process;9.79690997637777e-05!GO:0000151;ubiquitin ligase complex;9.86450490319518e-05!GO:0016568;chromatin modification;0.000102834429906307!GO:0030029;actin filament-based process;0.000105438185327999!GO:0033116;ER-Golgi intermediate compartment membrane;0.000106015278127227!GO:0005791;rough endoplasmic reticulum;0.000115281648664089!GO:0051427;hormone receptor binding;0.000116053976553037!GO:0043021;ribonucleoprotein binding;0.00013091021708509!GO:0003724;RNA helicase activity;0.00013091021708509!GO:0016481;negative regulation of transcription;0.00013091021708509!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.000163472406756679!GO:0006403;RNA localization;0.000164015277356937!GO:0050657;nucleic acid transport;0.000168426337083817!GO:0051236;establishment of RNA localization;0.000168426337083817!GO:0050658;RNA transport;0.000168426337083817!GO:0005741;mitochondrial outer membrane;0.0001711254200285!GO:0005048;signal sequence binding;0.000195161955634549!GO:0000314;organellar small ribosomal subunit;0.000195811074986079!GO:0005763;mitochondrial small ribosomal subunit;0.000195811074986079!GO:0016779;nucleotidyltransferase activity;0.000197701286801407!GO:0006260;DNA replication;0.0002029529805946!GO:0008092;cytoskeletal protein binding;0.000203020708121859!GO:0015630;microtubule cytoskeleton;0.000224947944820388!GO:0035257;nuclear hormone receptor binding;0.00023462174189128!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;0.000281716174352107!GO:0006612;protein targeting to membrane;0.000286790243234742!GO:0016627;oxidoreductase activity, acting on the CH-CH group of donors;0.000301736400531874!GO:0005885;Arp2/3 protein complex;0.000362127359304787!GO:0005694;chromosome;0.000377903020519583!GO:0019899;enzyme binding;0.000391684846830778!GO:0016310;phosphorylation;0.000404215185042828!GO:0065004;protein-DNA complex assembly;0.000412422550737857!GO:0048522;positive regulation of cellular process;0.000427752740788206!GO:0046474;glycerophospholipid biosynthetic process;0.000438041626786748!GO:0031902;late endosome membrane;0.000480811511085141!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.000509174489497323!GO:0004576;oligosaccharyl transferase activity;0.000529606438615216!GO:0005813;centrosome;0.000540492597361028!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.000560664133757762!GO:0008250;oligosaccharyl transferase complex;0.000570878484382566!GO:0008610;lipid biosynthetic process;0.000573308442506702!GO:0040008;regulation of growth;0.000606867722170835!GO:0000087;M phase of mitotic cell cycle;0.000636969816902771!GO:0030663;COPI coated vesicle membrane;0.000679134552944108!GO:0030126;COPI vesicle coat;0.000679134552944108!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.00069117827678894!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;0.000709139456230072!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.000780087367385642!GO:0007067;mitosis;0.000823592385120818!GO:0048471;perinuclear region of cytoplasm;0.000856465971775936!GO:0006357;regulation of transcription from RNA polymerase II promoter;0.000920908952505938!GO:0006695;cholesterol biosynthetic process;0.000957257906966726!GO:0051920;peroxiredoxin activity;0.000983463720124268!GO:0006333;chromatin assembly or disassembly;0.00100940575628675!GO:0007010;cytoskeleton organization and biogenesis;0.00103585103889366!GO:0030027;lamellipodium;0.00109545447465557!GO:0005815;microtubule organizing center;0.0011242440398265!GO:0018196;peptidyl-asparagine modification;0.0011319530094062!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.0011319530094062!GO:0030880;RNA polymerase complex;0.00115983022952398!GO:0016628;oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor;0.00117203094614047!GO:0016197;endosome transport;0.00122679255163157!GO:0050662;coenzyme binding;0.00125696215435117!GO:0007050;cell cycle arrest;0.00132097731724836!GO:0001726;ruffle;0.00135014538843825!GO:0043623;cellular protein complex assembly;0.00136172466347036!GO:0005852;eukaryotic translation initiation factor 3 complex;0.00138419038782601!GO:0006891;intra-Golgi vesicle-mediated transport;0.0014133772407924!GO:0009165;nucleotide biosynthetic process;0.00150660461307244!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.0015374616714071!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.0015374616714071!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.0015374616714071!GO:0044427;chromosomal part;0.00159776170408852!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.00161143489240702!GO:0043681;protein import into mitochondrion;0.00163786767126697!GO:0016044;membrane organization and biogenesis;0.00169371579084861!GO:0003899;DNA-directed RNA polymerase activity;0.00175913177245704!GO:0000785;chromatin;0.00176932073169584!GO:0008186;RNA-dependent ATPase activity;0.00187588277999409!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.00195490247422267!GO:0007034;vacuolar transport;0.00199052020418722!GO:0022890;inorganic cation transmembrane transporter activity;0.00199629628348991!GO:0007264;small GTPase mediated signal transduction;0.00205209005710742!GO:0022403;cell cycle phase;0.00205355971820685!GO:0016281;eukaryotic translation initiation factor 4F complex;0.00205904443531401!GO:0030132;clathrin coat of coated pit;0.00208381897891089!GO:0046489;phosphoinositide biosynthetic process;0.00216190373485034!GO:0030137;COPI-coated vesicle;0.00219394800814947!GO:0051028;mRNA transport;0.00221740759779297!GO:0048500;signal recognition particle;0.00222805107055732!GO:0046467;membrane lipid biosynthetic process;0.0022479520226632!GO:0006626;protein targeting to mitochondrion;0.00230204919463218!GO:0016772;transferase activity, transferring phosphorus-containing groups;0.00241780960658576!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.00244895151140658!GO:0000428;DNA-directed RNA polymerase complex;0.00244895151140658!GO:0005774;vacuolar membrane;0.00248421255827397!GO:0051287;NAD binding;0.00254688434990272!GO:0051252;regulation of RNA metabolic process;0.00260633745364204!GO:0031072;heat shock protein binding;0.00261910459730859!GO:0042802;identical protein binding;0.00264465211215907!GO:0008154;actin polymerization and/or depolymerization;0.0026580920725867!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.00286469375951357!GO:0015399;primary active transmembrane transporter activity;0.00286469375951357!GO:0043284;biopolymer biosynthetic process;0.00296288490081932!GO:0003690;double-stranded DNA binding;0.00300271141186758!GO:0051301;cell division;0.00307521249017005!GO:0009967;positive regulation of signal transduction;0.00323176931799734!GO:0030658;transport vesicle membrane;0.0032673859828286!GO:0045045;secretory pathway;0.00338844591496544!GO:0015992;proton transport;0.00345242303894904!GO:0031901;early endosome membrane;0.00348031025947859!GO:0006509;membrane protein ectodomain proteolysis;0.00354388472176049!GO:0033619;membrane protein proteolysis;0.00354388472176049!GO:0006818;hydrogen transport;0.0035623036323538!GO:0030041;actin filament polymerization;0.00367778695449474!GO:0065009;regulation of a molecular function;0.00367778695449474!GO:0043488;regulation of mRNA stability;0.00367778695449474!GO:0043487;regulation of RNA stability;0.00367778695449474!GO:0006383;transcription from RNA polymerase III promoter;0.00373799289634225!GO:0019752;carboxylic acid metabolic process;0.00379424578494214!GO:0030118;clathrin coat;0.00379424578494214!GO:0006979;response to oxidative stress;0.00389451413685003!GO:0006082;organic acid metabolic process;0.00403412351666084!GO:0006414;translational elongation;0.0041572893570548!GO:0004004;ATP-dependent RNA helicase activity;0.0045547200086552!GO:0003729;mRNA binding;0.00461102316842489!GO:0051329;interphase of mitotic cell cycle;0.0047062019550345!GO:0008180;signalosome;0.00477147524662401!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.00498566130060025!GO:0045047;protein targeting to ER;0.00498566130060025!GO:0008047;enzyme activator activity;0.00504798084262782!GO:0051128;regulation of cellular component organization and biogenesis;0.00506166437009189!GO:0016408;C-acyltransferase activity;0.00510357012266563!GO:0065007;biological regulation;0.00517748485516873!GO:0005665;DNA-directed RNA polymerase II, core complex;0.00534823073007066!GO:0006118;electron transport;0.00534858064539804!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.00545533123351188!GO:0035258;steroid hormone receptor binding;0.00561425094343065!GO:0007041;lysosomal transport;0.00568360030809786!GO:0016363;nuclear matrix;0.00573490557303721!GO:0033673;negative regulation of kinase activity;0.00576936346241282!GO:0006469;negative regulation of protein kinase activity;0.00576936346241282!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.00582141711158401!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.00582141711158401!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.00591755317467688!GO:0006650;glycerophospholipid metabolic process;0.00610358997234117!GO:0019222;regulation of metabolic process;0.00615640798252944!GO:0007033;vacuole organization and biogenesis;0.00625954202588961!GO:0005869;dynactin complex;0.00642458622912109!GO:0051087;chaperone binding;0.00646470613646096!GO:0005765;lysosomal membrane;0.00664504343310031!GO:0046483;heterocycle metabolic process;0.00667810509692348!GO:0044437;vacuolar part;0.006711245812157!GO:0007040;lysosome organization and biogenesis;0.00684462370298228!GO:0008312;7S RNA binding;0.00716387308334293!GO:0030134;ER to Golgi transport vesicle;0.00747727570177933!GO:0051540;metal cluster binding;0.00754781132545496!GO:0051536;iron-sulfur cluster binding;0.00754781132545496!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.00796036762056065!GO:0003746;translation elongation factor activity;0.00803030185592549!GO:0005520;insulin-like growth factor binding;0.00806445465953242!GO:0005096;GTPase activator activity;0.00809211681275726!GO:0017166;vinculin binding;0.00816044985144392!GO:0006740;NADPH regeneration;0.00819736859351406!GO:0006098;pentose-phosphate shunt;0.00819736859351406!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.00824824516654608!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.0082851708731925!GO:0015002;heme-copper terminal oxidase activity;0.0082851708731925!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.0082851708731925!GO:0004129;cytochrome-c oxidase activity;0.0082851708731925!GO:0051348;negative regulation of transferase activity;0.00861013554124616!GO:0051045;negative regulation of membrane protein ectodomain proteolysis;0.00889773620811277!GO:0051043;regulation of membrane protein ectodomain proteolysis;0.00889773620811277!GO:0030659;cytoplasmic vesicle membrane;0.00893379168798901!GO:0030660;Golgi-associated vesicle membrane;0.00895912694837547!GO:0030521;androgen receptor signaling pathway;0.00898560189852515!GO:0006839;mitochondrial transport;0.00915165155763162!GO:0030127;COPII vesicle coat;0.00940909695396682!GO:0012507;ER to Golgi transport vesicle membrane;0.00940909695396682!GO:0030176;integral to endoplasmic reticulum membrane;0.0102431950564552!GO:0016706;oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors;0.0109979268793793!GO:0003779;actin binding;0.0112830157194197!GO:0051325;interphase;0.0112847116971219!GO:0032940;secretion by cell;0.0117768766004084!GO:0005684;U2-dependent spliceosome;0.011795173307052!GO:0007006;mitochondrial membrane organization and biogenesis;0.0118079549085222!GO:0031529;ruffle organization and biogenesis;0.0118232368705948!GO:0006354;RNA elongation;0.0120411271775867!GO:0008139;nuclear localization sequence binding;0.0120411271775867!GO:0048468;cell development;0.0123024307224969!GO:0030119;AP-type membrane coat adaptor complex;0.0131486091448502!GO:0043022;ribosome binding;0.0133153963574512!GO:0006497;protein amino acid lipidation;0.0133397774439421!GO:0016251;general RNA polymerase II transcription factor activity;0.0133969457922439!GO:0043492;ATPase activity, coupled to movement of substances;0.0134733941872372!GO:0008632;apoptotic program;0.0138078542372465!GO:0006402;mRNA catabolic process;0.01383275851833!GO:0030125;clathrin vesicle coat;0.0139586702710009!GO:0030665;clathrin coated vesicle membrane;0.0139586702710009!GO:0006892;post-Golgi vesicle-mediated transport;0.0140207277373688!GO:0006595;polyamine metabolic process;0.0140528883083829!GO:0006778;porphyrin metabolic process;0.0141435412241422!GO:0033013;tetrapyrrole metabolic process;0.0141435412241422!GO:0006007;glucose catabolic process;0.0143507589752574!GO:0005862;muscle thin filament tropomyosin;0.0144412636365372!GO:0045893;positive regulation of transcription, DNA-dependent;0.0148075920685395!GO:0045892;negative regulation of transcription, DNA-dependent;0.0148471421180109!GO:0006334;nucleosome assembly;0.0151605967653922!GO:0048487;beta-tubulin binding;0.0155695099719957!GO:0008022;protein C-terminus binding;0.0157703142460985!GO:0003711;transcription elongation regulator activity;0.0158727928505642!GO:0048518;positive regulation of biological process;0.0158935128788639!GO:0022406;membrane docking;0.0159180016384527!GO:0048278;vesicle docking;0.0159180016384527!GO:0050681;androgen receptor binding;0.0160414400996033!GO:0051272;positive regulation of cell motility;0.0161571168448966!GO:0040017;positive regulation of locomotion;0.0161571168448966!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.0162179851143098!GO:0000339;RNA cap binding;0.016285968946158!GO:0051493;regulation of cytoskeleton organization and biogenesis;0.0170579329546103!GO:0033043;regulation of organelle organization and biogenesis;0.0170579329546103!GO:0016616;oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor;0.0172042254950218!GO:0035035;histone acetyltransferase binding;0.0172843288862217!GO:0051539;4 iron, 4 sulfur cluster binding;0.0172843288862217!GO:0004177;aminopeptidase activity;0.0176260944906705!GO:0016780;phosphotransferase activity, for other substituted phosphate groups;0.0180516544802392!GO:0046519;sphingoid metabolic process;0.0181710037052046!GO:0005975;carbohydrate metabolic process;0.0185849736930092!GO:0005832;chaperonin-containing T-complex;0.0185849736930092!GO:0045941;positive regulation of transcription;0.0186510685834404!GO:0006950;response to stress;0.0191863820483059!GO:0030032;lamellipodium biogenesis;0.0193475743520408!GO:0030984;kininogen binding;0.0194899650471866!GO:0004213;cathepsin B activity;0.0194899650471866!GO:0006904;vesicle docking during exocytosis;0.0194899650471866!GO:0000059;protein import into nucleus, docking;0.019690367701724!GO:0031418;L-ascorbic acid binding;0.019690367701724!GO:0006790;sulfur metabolic process;0.0197106514995283!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.0198529275426341!GO:0030518;steroid hormone receptor signaling pathway;0.0198780976197072!GO:0016272;prefoldin complex;0.0204990983842834!GO:0045935;positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.0209490238902028!GO:0015631;tubulin binding;0.0211043502221478!GO:0044433;cytoplasmic vesicle part;0.0213085911977711!GO:0008168;methyltransferase activity;0.0214299324855564!GO:0031543;peptidyl-proline dioxygenase activity;0.0218736984775402!GO:0051168;nuclear export;0.0220035208983793!GO:0000209;protein polyubiquitination;0.0226364276436478!GO:0031497;chromatin assembly;0.0228094931206868!GO:0005100;Rho GTPase activator activity;0.0228094931206868!GO:0006506;GPI anchor biosynthetic process;0.0231120586672033!GO:0030131;clathrin adaptor complex;0.0231661928189763!GO:0019798;procollagen-proline dioxygenase activity;0.0231661928189763!GO:0042158;lipoprotein biosynthetic process;0.0232382512752181!GO:0000096;sulfur amino acid metabolic process;0.023264570709101!GO:0007021;tubulin folding;0.023476083295557!GO:0006289;nucleotide-excision repair;0.0238272523553792!GO:0006693;prostaglandin metabolic process;0.0238785129107104!GO:0006692;prostanoid metabolic process;0.0238785129107104!GO:0016741;transferase activity, transferring one-carbon groups;0.0241813132772935!GO:0008064;regulation of actin polymerization and/or depolymerization;0.0241813132772935!GO:0030384;phosphoinositide metabolic process;0.0242810922965449!GO:0032984;macromolecular complex disassembly;0.025695447830701!GO:0017015;regulation of transforming growth factor beta receptor signaling pathway;0.0258622027361032!GO:0044452;nucleolar part;0.0259649346827702!GO:0048037;cofactor binding;0.0262971120193187!GO:0003756;protein disulfide isomerase activity;0.0263632299428718!GO:0016864;intramolecular oxidoreductase activity, transposing S-S bonds;0.0263632299428718!GO:0006607;NLS-bearing substrate import into nucleus;0.0263768516167762!GO:0030833;regulation of actin filament polymerization;0.0263805301997171!GO:0045792;negative regulation of cell size;0.026455320076682!GO:0050811;GABA receptor binding;0.0267288131195244!GO:0031625;ubiquitin protein ligase binding;0.0274330961087977!GO:0004228;gelatinase A activity;0.027770235833284!GO:0001955;blood vessel maturation;0.027770235833284!GO:0006505;GPI anchor metabolic process;0.0286926136505879!GO:0042168;heme metabolic process;0.0287297594046229!GO:0008033;tRNA processing;0.0287297594046229!GO:0006672;ceramide metabolic process;0.0288663477077246!GO:0016614;oxidoreductase activity, acting on CH-OH group of donors;0.0289323267676822!GO:0003678;DNA helicase activity;0.0293848343354094!GO:0030865;cortical cytoskeleton organization and biogenesis;0.0295326928264383!GO:0030308;negative regulation of cell growth;0.0296492568277262!GO:0007160;cell-matrix adhesion;0.0302383247568084!GO:0030508;thiol-disulfide exchange intermediate activity;0.0303117054503633!GO:0000049;tRNA binding;0.0307885569277266!GO:0006352;transcription initiation;0.0314036215414224!GO:0009225;nucleotide-sugar metabolic process;0.0320988693697529!GO:0050790;regulation of catalytic activity;0.0321204731205401!GO:0000082;G1/S transition of mitotic cell cycle;0.0321315532022424!GO:0015629;actin cytoskeleton;0.0328972768471602!GO:0030145;manganese ion binding;0.0328972768471602!GO:0003684;damaged DNA binding;0.0329303985349438!GO:0022408;negative regulation of cell-cell adhesion;0.0329303985349438!GO:0007179;transforming growth factor beta receptor signaling pathway;0.0331732030433983!GO:0006739;NADP metabolic process;0.0338204940322466!GO:0043624;cellular protein complex disassembly;0.0339835718277211!GO:0031589;cell-substrate adhesion;0.0340629734838257!GO:0012506;vesicle membrane;0.0354161895817751!GO:0045334;clathrin-coated endocytic vesicle;0.0354853232664569!GO:0047115;trans-1,2-dihydrobenzene-1,2-diol dehydrogenase activity;0.0356069253340431!GO:0007030;Golgi organization and biogenesis;0.036292964120567!GO:0031124;mRNA 3'-end processing;0.0364539970101844!GO:0030199;collagen fibril organization;0.0365666791316213!GO:0019205;nucleobase, nucleoside, nucleotide kinase activity;0.0365666791316213!GO:0001516;prostaglandin biosynthetic process;0.0370649184831987!GO:0046457;prostanoid biosynthetic process;0.0370649184831987!GO:0006897;endocytosis;0.0370767257847936!GO:0010324;membrane invagination;0.0370767257847936!GO:0048144;fibroblast proliferation;0.0371766850026992!GO:0048145;regulation of fibroblast proliferation;0.0371766850026992!GO:0006807;nitrogen compound metabolic process;0.0373216273792213!GO:0000279;M phase;0.0374018820710414!GO:0000075;cell cycle checkpoint;0.0377612114386109!GO:0006368;RNA elongation from RNA polymerase II promoter;0.0382231114989936!GO:0033559;unsaturated fatty acid metabolic process;0.0382765695949708!GO:0006636;unsaturated fatty acid biosynthetic process;0.0382765695949708!GO:0051059;NF-kappaB binding;0.0385994241946663!GO:0001952;regulation of cell-matrix adhesion;0.0387976475746253!GO:0005484;SNAP receptor activity;0.0395506398118545!GO:0006520;amino acid metabolic process;0.0403697805987726!GO:0043407;negative regulation of MAP kinase activity;0.0403697805987726!GO:0004287;prolyl oligopeptidase activity;0.0405279093121326!GO:0006643;membrane lipid metabolic process;0.0405279093121326!GO:0031371;ubiquitin conjugating enzyme complex;0.0405459478463439!GO:0048146;positive regulation of fibroblast proliferation;0.0405676857200785!GO:0030911;TPR domain binding;0.0416524886983952!GO:0006100;tricarboxylic acid cycle intermediate metabolic process;0.0419231336642678!GO:0045936;negative regulation of phosphate metabolic process;0.0420883733920583!GO:0051101;regulation of DNA binding;0.0452018412215225!GO:0043433;negative regulation of transcription factor activity;0.0454262367988836!GO:0008538;proteasome activator activity;0.0456957601062604!GO:0006302;double-strand break repair;0.0458465742012566!GO:0006779;porphyrin biosynthetic process;0.0458475612816831!GO:0033014;tetrapyrrole biosynthetic process;0.0458475612816831!GO:0008097;5S rRNA binding;0.0463658736267238!GO:0005099;Ras GTPase activator activity;0.0465358572238341!GO:0043241;protein complex disassembly;0.0466303502769181!GO:0043130;ubiquitin binding;0.0467366149426206!GO:0032182;small conjugating protein binding;0.0467366149426206!GO:0006376;mRNA splice site selection;0.0471668428463472!GO:0000389;nuclear mRNA 3'-splice site recognition;0.0471668428463472!GO:0016125;sterol metabolic process;0.0474936597406129!GO:0005758;mitochondrial intermembrane space;0.0487633688844501!GO:0003702;RNA polymerase II transcription factor activity;0.0488174905814579!GO:0001953;negative regulation of cell-matrix adhesion;0.0488174905814579!GO:0008475;procollagen-lysine 5-dioxygenase activity;0.0492586870360169!GO:0000288;mRNA catabolic process, deadenylation-dependent decay;0.0497774445872269 | |||
|sample_id=11750 | |sample_id=11750 | ||
|sample_note= | |sample_note= | ||
| Line 76: | Line 100: | ||
|sample_tissue=bone marrow | |sample_tissue=bone marrow | ||
|top_motifs=MAFB:1.9536552987;NKX2-1,4:1.70991172254;ATF6:1.67771571893;ZNF238:1.65777672911;NFATC1..3:1.61712026759;EN1,2:1.32292992465;ALX4:1.18233910739;RXR{A,B,G}:1.1673662094;NFE2L1:1.10483595622;GZF1:1.0582500027;SRF:1.04897914085;HOX{A4,D4}:0.967561088657;UFEwm:0.959722470252;GFI1B:0.955803609271;HMX1:0.925442019215;AHR_ARNT_ARNT2:0.891139326185;FOXL1:0.890333544406;HES1:0.872889651118;NKX2-2,8:0.868175056008;NANOG{mouse}:0.834073429652;PAX4:0.821427729516;ESR1:0.792112067565;SREBF1,2:0.758888932791;CDC5L:0.742073520777;PRDM1:0.731475947874;XBP1:0.71015034175;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.680063474399;GATA4:0.639144248999;bHLH_family:0.633642682616;TFCP2:0.621813719865;EBF1:0.598439147608;NFE2L2:0.567244398468;JUN:0.564145395181;TEAD1:0.550664288514;HSF1,2:0.544268412726;PAX1,9:0.534820525275;FOS_FOS{B,L1}_JUN{B,D}:0.525628704964;TAL1_TCF{3,4,12}:0.520980322331;FOSL2:0.50999539439;STAT2,4,6:0.497442458843;TLX1..3_NFIC{dimer}:0.496011148749;CREB1:0.479621717877;BACH2:0.477130338898;AIRE:0.468228090655;NKX3-2:0.468169465024;NR3C1:0.453816667889;HAND1,2:0.45334840843;TP53:0.451474496467;NR6A1:0.450696167106;ATF5_CREB3:0.449968369437;HLF:0.44669805007;MYBL2:0.436133732921;MEF2{A,B,C,D}:0.423475728196;NKX6-1,2:0.415384323071;MTE{core}:0.412396068971;GTF2I:0.396153108498;GLI1..3:0.386312358983;HOX{A5,B5}:0.377982725069;BPTF:0.37677381275;EVI1:0.373347387841;NFIX:0.353869376863;PATZ1:0.346240090921;RUNX1..3:0.343084298521;ESRRA:0.342920100546;GTF2A1,2:0.34076501966;TBX4,5:0.336757789903;NHLH1,2:0.336448162481;KLF4:0.325844718229;TEF:0.325816591166;TBP:0.320674237993;NFE2:0.319939976072;ZBTB6:0.315669766816;NKX3-1:0.310985624952;RFX1:0.310583219399;RFX2..5_RFXANK_RFXAP:0.299385347439;MZF1:0.284416683944;RXRA_VDR{dimer}:0.272082889124;LHX3,4:0.271516165984;HIF1A:0.262296605282;SMAD1..7,9:0.254618606348;ZIC1..3:0.236381300366;POU3F1..4:0.236322645071;EP300:0.230631863727;ATF4:0.22144102063;DMAP1_NCOR{1,2}_SMARC:0.212732840573;STAT1,3:0.202159318145;IKZF1:0.201724428192;IRF1,2:0.195784557633;FOX{I1,J2}:0.188620015898;HBP1_HMGB_SSRP1_UBTF:0.15901632668;PAX5:0.157395088146;ZBTB16:0.137079260041;TFAP2{A,C}:0.127067474379;FOXO1,3,4:0.109982259831;HIC1:0.101844397464;FOXP3:0.0931657341444;PAX2:0.0870991068551;MTF1:0.0859094640329;YY1:0.083941991483;EGR1..3:0.0784901710472;RREB1:0.0716388956366;MYFfamily:0.0676697013723;TFAP2B:0.0672328151525;DBP:0.0518052599688;GCM1,2:0.0387860383236;ZNF423:0.0350328352253;MAZ:0.0202597864499;HNF1A:0.0111545052817;PAX3,7:0.00896245811587;NR1H4:0.00379163665533;SOX17:-0.0177428222752;TLX2:-0.0199349908828;NKX2-3_NKX2-5:-0.0597673120414;REST:-0.0619759157614;TFAP4:-0.0783901277152;PRRX1,2:-0.0851026767927;PAX8:-0.0917209821788;FOXD3:-0.096567320768;ARID5B:-0.111076360161;ATF2:-0.115557415267;NRF1:-0.131557725403;ZNF384:-0.139446454427;SP1:-0.159318631155;STAT5{A,B}:-0.170137929646;LEF1_TCF7_TCF7L1,2:-0.172556136062;TGIF1:-0.175903082222;ZFP161:-0.178809687705;NFKB1_REL_RELA:-0.192785411995;SPZ1:-0.194093529953;GFI1:-0.200952545599;LMO2:-0.228280590089;FOX{D1,D2}:-0.255054765482;ZNF148:-0.267154581196;ELK1,4_GABP{A,B1}:-0.268897365202;HMGA1,2:-0.280046965262;HNF4A_NR2F1,2:-0.299046523832;PPARG:-0.304653181092;AR:-0.324601581839;MED-1{core}:-0.328654614821;CEBPA,B_DDIT3:-0.348170852328;TFDP1:-0.351385731968;XCPE1{core}:-0.365987065283;ZNF143:-0.392009275699;SOX5:-0.397585492237;MYB:-0.435139472207;IRF7:-0.436953387982;POU1F1:-0.440570216037;NFIL3:-0.447615779355;NANOG:-0.451815414231;ETS1,2:-0.472175855641;PBX1:-0.479893623964;CRX:-0.487111057877;POU6F1:-0.487355459648;SOX2:-0.488677858844;RORA:-0.499069904777;SPI1:-0.502618285682;PDX1:-0.503174931227;FOXN1:-0.520485154938;ELF1,2,4:-0.524161696465;CDX1,2,4:-0.533427456033;SPIB:-0.550314660347;ADNP_IRX_SIX_ZHX:-0.571449530536;VSX1,2:-0.572280200339;MYOD1:-0.583254478062;FOXA2:-0.611570290793;NFY{A,B,C}:-0.640891512168;NR5A1,2:-0.665366217068;POU5F1:-0.700944521907;OCT4_SOX2{dimer}:-0.732741811652;PAX6:-0.747642536378;E2F1..5:-0.750413006816;IKZF2:-0.759814794157;FOXP1:-0.768625012443;FOXM1:-0.784771210434;RBPJ:-0.784898891217;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.809568969932;CUX2:-0.814182782682;HOX{A6,A7,B6,B7}:-0.832138774376;FOX{F1,F2,J1}:-0.840332601539;FOXQ1:-0.852699998122;BREu{core}:-0.85459053482;GATA6:-0.854843310856;HOXA9_MEIS1:-0.882081328872;ZEB1:-0.913440109183;SNAI1..3:-0.931646079547;ONECUT1,2:-0.970220608591;TOPORS:-1.00190055715;POU2F1..3:-1.03226340655;SOX{8,9,10}:-1.09200964673;T:-1.21102202326;ALX1:-1.35228430733;PITX1..3:-1.70566155186 | |top_motifs=MAFB:1.9536552987;NKX2-1,4:1.70991172254;ATF6:1.67771571893;ZNF238:1.65777672911;NFATC1..3:1.61712026759;EN1,2:1.32292992465;ALX4:1.18233910739;RXR{A,B,G}:1.1673662094;NFE2L1:1.10483595622;GZF1:1.0582500027;SRF:1.04897914085;HOX{A4,D4}:0.967561088657;UFEwm:0.959722470252;GFI1B:0.955803609271;HMX1:0.925442019215;AHR_ARNT_ARNT2:0.891139326185;FOXL1:0.890333544406;HES1:0.872889651118;NKX2-2,8:0.868175056008;NANOG{mouse}:0.834073429652;PAX4:0.821427729516;ESR1:0.792112067565;SREBF1,2:0.758888932791;CDC5L:0.742073520777;PRDM1:0.731475947874;XBP1:0.71015034175;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.680063474399;GATA4:0.639144248999;bHLH_family:0.633642682616;TFCP2:0.621813719865;EBF1:0.598439147608;NFE2L2:0.567244398468;JUN:0.564145395181;TEAD1:0.550664288514;HSF1,2:0.544268412726;PAX1,9:0.534820525275;FOS_FOS{B,L1}_JUN{B,D}:0.525628704964;TAL1_TCF{3,4,12}:0.520980322331;FOSL2:0.50999539439;STAT2,4,6:0.497442458843;TLX1..3_NFIC{dimer}:0.496011148749;CREB1:0.479621717877;BACH2:0.477130338898;AIRE:0.468228090655;NKX3-2:0.468169465024;NR3C1:0.453816667889;HAND1,2:0.45334840843;TP53:0.451474496467;NR6A1:0.450696167106;ATF5_CREB3:0.449968369437;HLF:0.44669805007;MYBL2:0.436133732921;MEF2{A,B,C,D}:0.423475728196;NKX6-1,2:0.415384323071;MTE{core}:0.412396068971;GTF2I:0.396153108498;GLI1..3:0.386312358983;HOX{A5,B5}:0.377982725069;BPTF:0.37677381275;EVI1:0.373347387841;NFIX:0.353869376863;PATZ1:0.346240090921;RUNX1..3:0.343084298521;ESRRA:0.342920100546;GTF2A1,2:0.34076501966;TBX4,5:0.336757789903;NHLH1,2:0.336448162481;KLF4:0.325844718229;TEF:0.325816591166;TBP:0.320674237993;NFE2:0.319939976072;ZBTB6:0.315669766816;NKX3-1:0.310985624952;RFX1:0.310583219399;RFX2..5_RFXANK_RFXAP:0.299385347439;MZF1:0.284416683944;RXRA_VDR{dimer}:0.272082889124;LHX3,4:0.271516165984;HIF1A:0.262296605282;SMAD1..7,9:0.254618606348;ZIC1..3:0.236381300366;POU3F1..4:0.236322645071;EP300:0.230631863727;ATF4:0.22144102063;DMAP1_NCOR{1,2}_SMARC:0.212732840573;STAT1,3:0.202159318145;IKZF1:0.201724428192;IRF1,2:0.195784557633;FOX{I1,J2}:0.188620015898;HBP1_HMGB_SSRP1_UBTF:0.15901632668;PAX5:0.157395088146;ZBTB16:0.137079260041;TFAP2{A,C}:0.127067474379;FOXO1,3,4:0.109982259831;HIC1:0.101844397464;FOXP3:0.0931657341444;PAX2:0.0870991068551;MTF1:0.0859094640329;YY1:0.083941991483;EGR1..3:0.0784901710472;RREB1:0.0716388956366;MYFfamily:0.0676697013723;TFAP2B:0.0672328151525;DBP:0.0518052599688;GCM1,2:0.0387860383236;ZNF423:0.0350328352253;MAZ:0.0202597864499;HNF1A:0.0111545052817;PAX3,7:0.00896245811587;NR1H4:0.00379163665533;SOX17:-0.0177428222752;TLX2:-0.0199349908828;NKX2-3_NKX2-5:-0.0597673120414;REST:-0.0619759157614;TFAP4:-0.0783901277152;PRRX1,2:-0.0851026767927;PAX8:-0.0917209821788;FOXD3:-0.096567320768;ARID5B:-0.111076360161;ATF2:-0.115557415267;NRF1:-0.131557725403;ZNF384:-0.139446454427;SP1:-0.159318631155;STAT5{A,B}:-0.170137929646;LEF1_TCF7_TCF7L1,2:-0.172556136062;TGIF1:-0.175903082222;ZFP161:-0.178809687705;NFKB1_REL_RELA:-0.192785411995;SPZ1:-0.194093529953;GFI1:-0.200952545599;LMO2:-0.228280590089;FOX{D1,D2}:-0.255054765482;ZNF148:-0.267154581196;ELK1,4_GABP{A,B1}:-0.268897365202;HMGA1,2:-0.280046965262;HNF4A_NR2F1,2:-0.299046523832;PPARG:-0.304653181092;AR:-0.324601581839;MED-1{core}:-0.328654614821;CEBPA,B_DDIT3:-0.348170852328;TFDP1:-0.351385731968;XCPE1{core}:-0.365987065283;ZNF143:-0.392009275699;SOX5:-0.397585492237;MYB:-0.435139472207;IRF7:-0.436953387982;POU1F1:-0.440570216037;NFIL3:-0.447615779355;NANOG:-0.451815414231;ETS1,2:-0.472175855641;PBX1:-0.479893623964;CRX:-0.487111057877;POU6F1:-0.487355459648;SOX2:-0.488677858844;RORA:-0.499069904777;SPI1:-0.502618285682;PDX1:-0.503174931227;FOXN1:-0.520485154938;ELF1,2,4:-0.524161696465;CDX1,2,4:-0.533427456033;SPIB:-0.550314660347;ADNP_IRX_SIX_ZHX:-0.571449530536;VSX1,2:-0.572280200339;MYOD1:-0.583254478062;FOXA2:-0.611570290793;NFY{A,B,C}:-0.640891512168;NR5A1,2:-0.665366217068;POU5F1:-0.700944521907;OCT4_SOX2{dimer}:-0.732741811652;PAX6:-0.747642536378;E2F1..5:-0.750413006816;IKZF2:-0.759814794157;FOXP1:-0.768625012443;FOXM1:-0.784771210434;RBPJ:-0.784898891217;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.809568969932;CUX2:-0.814182782682;HOX{A6,A7,B6,B7}:-0.832138774376;FOX{F1,F2,J1}:-0.840332601539;FOXQ1:-0.852699998122;BREu{core}:-0.85459053482;GATA6:-0.854843310856;HOXA9_MEIS1:-0.882081328872;ZEB1:-0.913440109183;SNAI1..3:-0.931646079547;ONECUT1,2:-0.970220608591;TOPORS:-1.00190055715;POU2F1..3:-1.03226340655;SOX{8,9,10}:-1.09200964673;T:-1.21102202326;ALX1:-1.35228430733;PITX1..3:-1.70566155186 | ||
|xref= | |||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11750-123G4;search_select_hide=table117:FF:11750-123G4 | |||
}} | }} | ||
Latest revision as of 18:17, 4 June 2020
| Name: | mesenchymal precursor cell - bone marrow, donor1 |
|---|---|
| Species: | Human (Homo sapiens) |
| Library ID: | CNhs12366 |
| Sample type: | primary cells |
| Genomic View: | UCSC |
| RefEX: | Specific genes |
| FANTOM CAT: | 1, 2, 3, 4 |
| CAGEd-oPOSSUM: | link |
| ZENBU report : | link |
| Additional information | ||||||||||||||||||||||||||||
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Sample information
RNA information
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| CAGE Accession numbers | ||||||||||||||||||||||||||||||||||||||||||||||
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| Download raw sequence, BAM & CTSS | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs12366
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs12366
| Novel motif | Logo | P-value |
|---|---|---|
| 1 | 1 | 0.85 |
| 10 | 10 | 0.397 |
| 100 | 100 | 0.541 |
| 101 | 101 | 0.248 |
| 102 | 102 | 0.034 |
| 103 | 103 | 0.376 |
| 104 | 104 | 0.987 |
| 105 | 105 | 0.718 |
| 106 | 106 | 0.921 |
| 107 | 107 | 0.52 |
| 108 | 108 | 0.714 |
| 109 | 109 | 0.941 |
| 11 | 11 | 0.846 |
| 110 | 110 | 0.245 |
| 111 | 111 | 0.565 |
| 112 | 112 | 0.886 |
| 113 | 113 | 0.00144 |
| 114 | 114 | 0.379 |
| 115 | 115 | 0.889 |
| 116 | 116 | 0.666 |
| 117 | 117 | 0.962 |
| 118 | 118 | 0.47 |
| 119 | 119 | 0.703 |
| 12 | 12 | 0.441 |
| 120 | 120 | 0.682 |
| 121 | 121 | 0.985 |
| 122 | 122 | 0.0615 |
| 123 | 123 | 1.48386e-5 |
| 124 | 124 | 0.213 |
| 125 | 125 | 0.862 |
| 126 | 126 | 0.741 |
| 127 | 127 | 0.661 |
| 128 | 128 | 0.372 |
| 129 | 129 | 0.603 |
| 13 | 13 | 0.793 |
| 130 | 130 | 0.473 |
| 131 | 131 | 0.279 |
| 132 | 132 | 0.786 |
| 133 | 133 | 0.499 |
| 134 | 134 | 0.0762 |
| 135 | 135 | 0.483 |
| 136 | 136 | 0.641 |
| 137 | 137 | 0.971 |
| 138 | 138 | 0.761 |
| 139 | 139 | 0.816 |
| 14 | 14 | 0.579 |
| 140 | 140 | 0.0555 |
| 141 | 141 | 0.0914 |
| 142 | 142 | 0.505 |
| 143 | 143 | 0.465 |
| 144 | 144 | 0.356 |
| 145 | 145 | 0.577 |
| 146 | 146 | 0.617 |
| 147 | 147 | 0.0415 |
| 148 | 148 | 0.787 |
| 149 | 149 | 0.237 |
| 15 | 15 | 0.939 |
| 150 | 150 | 0.672 |
| 151 | 151 | 0.77 |
| 152 | 152 | 0.761 |
| 153 | 153 | 0.282 |
| 154 | 154 | 0.581 |
| 155 | 155 | 0.0157 |
| 156 | 156 | 0.207 |
| 157 | 157 | 0.167 |
| 158 | 158 | 0.0969 |
| 159 | 159 | 0.102 |
| 16 | 16 | 0.067 |
| 160 | 160 | 0.45 |
| 161 | 161 | 0.171 |
| 162 | 162 | 0.806 |
| 163 | 163 | 0.73 |
| 164 | 164 | 0.164 |
| 165 | 165 | 0.407 |
| 166 | 166 | 0.016 |
| 167 | 167 | 0.978 |
| 168 | 168 | 0.646 |
| 169 | 169 | 0.247 |
| 17 | 17 | 0.872 |
| 18 | 18 | 0.118 |
| 19 | 19 | 0.0346 |
| 2 | 2 | 0.677 |
| 20 | 20 | 0.834 |
| 21 | 21 | 0.547 |
| 22 | 22 | 0.295 |
| 23 | 23 | 0.0845 |
| 24 | 24 | 0.33 |
| 25 | 25 | 0.291 |
| 26 | 26 | 0.531 |
| 27 | 27 | 0.758 |
| 28 | 28 | 0.354 |
| 29 | 29 | 0.233 |
| 3 | 3 | 0.846 |
| 30 | 30 | 0.347 |
| 31 | 31 | 0.807 |
| 32 | 32 | 1.34982e-6 |
| 33 | 33 | 0.468 |
| 34 | 34 | 0.268 |
| 35 | 35 | 0.824 |
| 36 | 36 | 0.033 |
| 37 | 37 | 0.0301 |
| 38 | 38 | 0.277 |
| 39 | 39 | 0.185 |
| 4 | 4 | 0.0149 |
| 40 | 40 | 0.0435 |
| 41 | 41 | 0.881 |
| 42 | 42 | 0.409 |
| 43 | 43 | 0.752 |
| 44 | 44 | 0.849 |
| 45 | 45 | 0.618 |
| 46 | 46 | 0.666 |
| 47 | 47 | 0.0601 |
| 48 | 48 | 0.0958 |
| 49 | 49 | 0.267 |
| 5 | 5 | 0.779 |
| 50 | 50 | 0.48 |
| 51 | 51 | 0.538 |
| 52 | 52 | 0.848 |
| 53 | 53 | 0.0518 |
| 54 | 54 | 0.852 |
| 55 | 55 | 0.0598 |
| 56 | 56 | 0.903 |
| 57 | 57 | 0.996 |
| 58 | 58 | 0.219 |
| 59 | 59 | 0.918 |
| 6 | 6 | 0.404 |
| 60 | 60 | 0.665 |
| 61 | 61 | 0.711 |
| 62 | 62 | 0.52 |
| 63 | 63 | 0.295 |
| 64 | 64 | 0.413 |
| 65 | 65 | 0.769 |
| 66 | 66 | 0.372 |
| 67 | 67 | 0.969 |
| 68 | 68 | 0.953 |
| 69 | 69 | 0.77 |
| 7 | 7 | 0.472 |
| 70 | 70 | 0.938 |
| 71 | 71 | 0.602 |
| 72 | 72 | 0.851 |
| 73 | 73 | 0.129 |
| 74 | 74 | 0.318 |
| 75 | 75 | 0.963 |
| 76 | 76 | 0.793 |
| 77 | 77 | 0.263 |
| 78 | 78 | 0.0474 |
| 79 | 79 | 0.0118 |
| 8 | 8 | 0.77 |
| 80 | 80 | 0.594 |
| 81 | 81 | 0.969 |
| 82 | 82 | 0.751 |
| 83 | 83 | 0.972 |
| 84 | 84 | 0.946 |
| 85 | 85 | 0.303 |
| 86 | 86 | 0.261 |
| 87 | 87 | 0.939 |
| 88 | 88 | 0.676 |
| 89 | 89 | 0.0857 |
| 9 | 9 | 0.317 |
| 90 | 90 | 0.775 |
| 91 | 91 | 0.533 |
| 92 | 92 | 0.0909 |
| 93 | 93 | 0.536 |
| 94 | 94 | 0.967 |
| 95 | 95 | 0.67 |
| 96 | 96 | 0.929 |
| 97 | 97 | 0.29 |
| 98 | 98 | 0.322 |
| 99 | 99 | 0.879 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs12366
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
EFO:0002091 biological replicate
FF:0000269 human mesenchymal precursor cell of bone marrow sample
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000723 (somatic stem cell)
0000048 (multi fate stem cell)
0000548 (animal cell)
0002320 (connective tissue cell)
0002371 (somatic cell)
0000219 (motile cell)
0000134 (mesenchymal cell)
0000255 (eukaryotic cell)
0000034 (stem cell)
0002092 (bone marrow cell)
0002540 (mesenchymal stem cell of the bone marrow)
UBERON: Anatomy
0000468 (multi-cellular organism)
0002371 (bone marrow)
0001474 (bone element)
0002384 (connective tissue)
0000479 (tissue)
0000062 (organ)
0004120 (mesoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0004765 (skeletal element)
0010317 (germ layer / neural crest derived structure)
0002204 (musculoskeletal system)
0001434 (skeletal system)
0002390 (hematopoietic system)
0002193 (hemolymphoid system)
0002405 (immune system)
FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000269 (human mesenchymal precursor cell of bone marrow sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000134 (mesenchymal cell)
