FF:11752-123G6: Difference between revisions

Latest revision as of 18:17, 4 June 2020

Name:	mesenchymal precursor cell - cardiac, donor1
Species:	Human (Homo sapiens)
Library ID:	CNhs12368
Sample type:	primary cells
Genomic View:	UCSC
RefEX:	Specific genes
FANTOM CAT:	1, 2, 3, 4, 5, 6, 7, 8
CAGEd-oPOSSUM:	link
ZENBU report :	link

Additional information

Sample information

strain	NA
tissue	heart
dev stage	NA
sex	NA
age	NA
cell type	mesenchymal precursor cell
cell line	NA
company	NA
collaboration	Claudio Schneider LNCIB
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	NA
catalog number	NA
sample type	NA
extraction protocol (Details)	NA

CAGE Accession numbers

Method		Sample accession id
CAGE		SAMD00005347

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs12368		CAGE		DRX008551		DRR009423

Accession ID Hg19

Library id		BAM		CTSS
CNhs12368		DRZ000848		DRZ002233

Accession ID Hg38

Library id		BAM		CTSS
CNhs12368		DRZ012198		DRZ013583

Download raw sequence, BAM & CTSS

Hg19

Fasta	BAM	CTSS
download	download	donwload

Hg38

BAM	CTSS
download	donwload

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

Coexpression cluster	score
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral	0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate	0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural	0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial	0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel	0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS	0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils	0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural	0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis	0
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy	0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood	0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate	0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma	-0.46
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial	0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic	0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat	0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal	0
C113-thyroid-throat-lung-lymph-small-colon-trachea	0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma	0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus	0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea	0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal	0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula	0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD19	0
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils	0
C120-immature-salivary-tongue-skin-cervical-CD14-CD34	0
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B	0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal	0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils	0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte	0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus	0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain	0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil	0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP	0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small	0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD4	0
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar	0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin	0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived	0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma	0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis	0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum	0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal	0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic	0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal	0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal	0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen	0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen	0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B	0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair	0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast	0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis	0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal	0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell	0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral	0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal	0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum	0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue	0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small	0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast	0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung	0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular	0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate	0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid	0
C156-plasma-splenic-hereditary-B-large-xeroderma-b	0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea	0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen	0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal	0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain	0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral	0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta	0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon	0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal	0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma	0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial	0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung	0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD4	0
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral	0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma	0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage	0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet	0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye	0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes	0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose	0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils	0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural	0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19	-0.133
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous	0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus	0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil	0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood	0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle	0
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar	0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute	0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt	0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid	0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis	0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid	0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage	0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat	0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen	0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma	0
C190-colon-small-rectum-duodenum-appendix-temporal-oral	0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic	0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD4	0
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD14	0
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar	0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal	0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial	0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival	0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes	0.415
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma	0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast	0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat	0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed	-0.0613
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall	0
C202-salivary-skin-penis-tongue-uterus-cervical-immature	0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic	0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD34	0
C205-mycosis-cord-hairy-xeroderma-CD4-B-b	0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary	0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte	0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous	0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen	0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic	0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil	0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney	0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD34	0
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral	0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain	0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature	0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD34	0
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital	0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary	0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum	0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD19	0
C220-Adipocyte-mature-left-breast-skin-liver-adipose	0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular	0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte	-0.0441
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte	0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal	0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal	0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal	0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue	0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult	0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart	0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD14	0
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung	0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis	0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum	0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF7	0
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma	0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas	0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma	0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial	0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell	0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy	0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral	0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal	0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus	-0.784
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach	0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing	0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage	0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic	0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory	0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital	0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast	0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial	0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall	0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD4	0.192
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue	0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma	0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum	0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris	0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast	0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla	0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral	0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric	0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing	0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole	0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood	0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal	0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms	0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil	0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute	0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8	0
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast	0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear	0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate	0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD4	0.0895
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung	0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth	0
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum	0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil	0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast	0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte	0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal	0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal	0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma	0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory	0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial	0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic	0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD4	0
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small	-0.6
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat	0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular	0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus	0.164
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic	0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial	0.164
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal	0.0895
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal	0.227
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left	0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart	0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature	0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea	0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal	0.195
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD34	0
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral	0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte	0.48
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed	0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral	0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital	0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood	0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala	0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal	0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils	0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic	0.647
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid	0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole	0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus	0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea	0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory	0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen	0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile	0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula	0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt	0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea	0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms	0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD133	0
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus	0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small	0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal	0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon	0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder	0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature	0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS	0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel	0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix	0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus	0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma	0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas	0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma	0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas	0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma	0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary	0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature	0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma	0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue	0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural	0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H9	0
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic	0.375
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature	0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical	0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b	0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph	0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute	0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic	0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils	0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus	0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung	0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma	0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK	0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast	0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue	0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate	0.0895
C72-skeletal-tongue-throat-heart-diaphragm-penis-left	0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal	0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy	0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral	0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell	0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD8	0
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea	0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal	0.764
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD34	0
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast	0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid	0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD34	0
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic	0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon	0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma	0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma	0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic	0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived	0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic	0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left	0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen	0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair	0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole	0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular	0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma	0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid	0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix	0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain	0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole	0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs12368

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	0.835
MA0003.1	MA0003.1	0.353
MA0004.1	MA0004.1	0.105
MA0006.1	MA0006.1	0.7
MA0007.1	MA0007.1	0.758
MA0009.1	MA0009.1	0.446
MA0014.1	MA0014.1	0.419
MA0017.1	MA0017.1	0.357
MA0018.2	MA0018.2	0.0155
MA0019.1	MA0019.1	0.756
MA0024.1	MA0024.1	4.49164e-9
MA0025.1	MA0025.1	0.264
MA0027.1	MA0027.1	0.98
MA0028.1	MA0028.1	0.0816
MA0029.1	MA0029.1	0.4
MA0030.1	MA0030.1	0.419
MA0031.1	MA0031.1	0.661
MA0035.2	MA0035.2	0.198
MA0038.1	MA0038.1	0.0613
MA0039.2	MA0039.2	0.338
MA0040.1	MA0040.1	0.0786
MA0041.1	MA0041.1	0.406
MA0042.1	MA0042.1	0.914
MA0043.1	MA0043.1	0.239
MA0046.1	MA0046.1	0.0239
MA0047.2	MA0047.2	0.577
MA0048.1	MA0048.1	0.358
MA0050.1	MA0050.1	0.712
MA0051.1	MA0051.1	0.165
MA0052.1	MA0052.1	0.325
MA0055.1	MA0055.1	0.122
MA0057.1	MA0057.1	0.844
MA0058.1	MA0058.1	0.0268
MA0059.1	MA0059.1	0.0734
MA0060.1	MA0060.1	4.04367e-7
MA0061.1	MA0061.1	0.0735
MA0062.2	MA0062.2	0.834
MA0065.2	MA0065.2	0.383
MA0066.1	MA0066.1	0.766
MA0067.1	MA0067.1	0.207
MA0068.1	MA0068.1	0.51
MA0069.1	MA0069.1	0.26
MA0070.1	MA0070.1	0.466
MA0071.1	MA0071.1	0.964
MA0072.1	MA0072.1	0.934
MA0073.1	MA0073.1	0.846
MA0074.1	MA0074.1	0.252
MA0076.1	MA0076.1	0.262
MA0077.1	MA0077.1	0.234
MA0078.1	MA0078.1	0.99
MA0079.2	MA0079.2	0.481
MA0080.2	MA0080.2	3.8705e-5
MA0081.1	MA0081.1	0.199
MA0083.1	MA0083.1	0.429
MA0084.1	MA0084.1	0.0755
MA0087.1	MA0087.1	0.615
MA0088.1	MA0088.1	0.462
MA0090.1	MA0090.1	0.0068
MA0091.1	MA0091.1	0.203
MA0092.1	MA0092.1	0.841
MA0093.1	MA0093.1	0.0445
MA0099.2	MA0099.2	7.56807e-14
MA0100.1	MA0100.1	0.063
MA0101.1	MA0101.1	0.00348
MA0102.2	MA0102.2	0.351
MA0103.1	MA0103.1	0.00493
MA0104.2	MA0104.2	0.459
MA0105.1	MA0105.1	0.257
MA0106.1	MA0106.1	0.00119
MA0107.1	MA0107.1	0.00155
MA0108.2	MA0108.2	0.164
MA0111.1	MA0111.1	0.0354
MA0112.2	MA0112.2	0.0439
MA0113.1	MA0113.1	0.411
MA0114.1	MA0114.1	0.448
MA0115.1	MA0115.1	0.157
MA0116.1	MA0116.1	0.905
MA0117.1	MA0117.1	0.861
MA0119.1	MA0119.1	0.509
MA0122.1	MA0122.1	0.964
MA0124.1	MA0124.1	0.0346
MA0125.1	MA0125.1	0.14
MA0131.1	MA0131.1	0.476
MA0135.1	MA0135.1	0.32
MA0136.1	MA0136.1	6.57061e-5
MA0137.2	MA0137.2	0.086
MA0138.2	MA0138.2	0.652
MA0139.1	MA0139.1	0.281
MA0140.1	MA0140.1	0.577
MA0141.1	MA0141.1	0.663
MA0142.1	MA0142.1	0.067
MA0143.1	MA0143.1	0.6
MA0144.1	MA0144.1	0.0173
MA0145.1	MA0145.1	0.612
MA0146.1	MA0146.1	0.931
MA0147.1	MA0147.1	0.732
MA0148.1	MA0148.1	0.908
MA0149.1	MA0149.1	0.604
MA0150.1	MA0150.1	1.68396e-7
MA0152.1	MA0152.1	0.0121
MA0153.1	MA0153.1	0.976
MA0154.1	MA0154.1	0.66
MA0155.1	MA0155.1	0.344
MA0156.1	MA0156.1	0.0346
MA0157.1	MA0157.1	0.934
MA0159.1	MA0159.1	0.212
MA0160.1	MA0160.1	0.701
MA0162.1	MA0162.1	0.0352
MA0163.1	MA0163.1	0.0793
MA0164.1	MA0164.1	0.319
MA0258.1	MA0258.1	0.591
MA0259.1	MA0259.1	0.948

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs12368

Novel motif	Logo	P-value
1	1	0.965
10	10	0.335
100	100	0.988
101	101	0.661
102	102	0.585
103	103	0.109
104	104	0.753
105	105	0.66
106	106	0.438
107	107	0.621
108	108	0.174
109	109	0.0592
11	11	0.474
110	110	0.334
111	111	0.673
112	112	0.105
113	113	8.96369e-4
114	114	0.374
115	115	0.619
116	116	0.0515
117	117	0.0373
118	118	0.713
119	119	0.729
12	12	0.932
120	120	0.11
121	121	0.624
122	122	0.0811
123	123	8.28523e-4
124	124	0.0465
125	125	0.916
126	126	0.903
127	127	0.817
128	128	0.936
129	129	0.214
13	13	0.415
130	130	0.567
131	131	0.133
132	132	0.401
133	133	0.538
134	134	0.569
135	135	0.541
136	136	0.229
137	137	0.749
138	138	0.943
139	139	0.141
14	14	0.446
140	140	0.721
141	141	0.51
142	142	0.749
143	143	0.213
144	144	0.534
145	145	0.976
146	146	0.952
147	147	0.273
148	148	0.909
149	149	0.239
15	15	0.797
150	150	0.17
151	151	0.832
152	152	0.0271
153	153	0.448
154	154	0.302
155	155	0.00511
156	156	0.163
157	157	0.943
158	158	0.065
159	159	0.126
16	16	0.0452
160	160	0.296
161	161	0.333
162	162	0.194
163	163	0.556
164	164	0.00988
165	165	0.702
166	166	0.357
167	167	0.383
168	168	0.855
169	169	0.119
17	17	0.549
18	18	0.0228
19	19	0.132
2	2	0.797
20	20	0.326
21	21	0.52
22	22	0.142
23	23	0.24
24	24	0.87
25	25	0.0579
26	26	0.703
27	27	0.881
28	28	0.841
29	29	0.0674
3	3	0.696
30	30	0.973
31	31	0.535
32	32	2.40754e-5
33	33	0.669
34	34	0.646
35	35	0.89
36	36	0.0483
37	37	0.00161
38	38	0.24
39	39	0.251
4	4	0.023
40	40	0.407
41	41	0.989
42	42	0.397
43	43	0.669
44	44	0.943
45	45	0.861
46	46	0.837
47	47	0.558
48	48	0.857
49	49	0.118
5	5	0.888
50	50	0.876
51	51	0.611
52	52	0.947
53	53	0.00918
54	54	0.959
55	55	0.216
56	56	0.658
57	57	0.723
58	58	0.12
59	59	0.427
6	6	0.357
60	60	0.565
61	61	0.677
62	62	0.13
63	63	0.553
64	64	0.886
65	65	0.97
66	66	0.201
67	67	0.319
68	68	0.614
69	69	0.321
7	7	0.141
70	70	0.747
71	71	0.522
72	72	0.685
73	73	0.00154
74	74	0.0608
75	75	0.21
76	76	0.345
77	77	0.0109
78	78	0.018
79	79	0.509
8	8	0.517
80	80	0.663
81	81	0.8
82	82	0.958
83	83	0.758
84	84	0.857
85	85	0.159
86	86	0.19
87	87	0.00288
88	88	0.626
89	89	0.176
9	9	0.689
90	90	0.933
91	91	0.491
92	92	0.156
93	93	0.799
94	94	0.504
95	95	0.011
96	96	0.468
97	97	0.164
98	98	0.125
99	99	0.695

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs12368

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
EFO:0002091 biological replicate
FF:0000271 human cardiac mesenchymal precursor cell sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000723 (somatic stem cell)
0000048 (multi fate stem cell)
0000548 (animal cell)
0002320 (connective tissue cell)
0002371 (somatic cell)
0000219 (motile cell)
0000134 (mesenchymal cell)
0000255 (eukaryotic cell)
0002494 (cardiocyte)
0000034 (stem cell)
0000569 (cardiac mesenchymal cell)

UBERON: Anatomy
0000468 (multi-cellular organism)
0007100 (primary circulatory organ)
0000948 (heart)
0002384 (connective tissue)
0000479 (tissue)
0010314 (structure with developmental contribution from neural crest)
0000062 (organ)
0004120 (mesoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0003103 (compound organ)
0010317 (germ layer / neural crest derived structure)
0004535 (cardiovascular system)
0001009 (circulatory system)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000271 (human cardiac mesenchymal precursor cell sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
CL:0000133 (neurectodermal cell)
CL:0000134 (mesenchymal cell)
CL:0000011 (migratory trunk neural crest cell)
CL:0000221 (ectodermal cell)

@@ Line 1: / Line 1: @@
 {{f5samples
-|DRA_sample_Accession=CAGE@DRS008443
+|DRA_sample_Accession=CAGE@SAMD00005347
-|accession_numbers=CAGE;DRX008551;DRR009423;DRZ000848;DRZ002233
+|accession_numbers=CAGE;DRX008551;DRR009423;DRZ000848;DRZ002233;DRZ012198;DRZ013583
 |ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0007100,UBERON:0000948,UBERON:0002384,UBERON:0000479,UBERON:0010314,UBERON:0000062,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0003103,UBERON:0010317,UBERON:0004535,UBERON:0001009
 |ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000723,CL:0000048,CL:0000548,CL:0002320,CL:0002371,CL:0000219,CL:0000134,CL:0000255,CL:0002494,CL:0000034,CL:0000569
@@ Line 9: / Line 9: @@
 |created_by=
 |creation_date=
-|data_phase=1
+|data_phase=2
-|datafreeze_phase=1
+|datafreeze_phase=2
 |def=
 |expression_enrichment_score=chr6:134210243..134210257,+!p1@TCF21!1.97!92.91!TCF21;;chr8:72756637..72756664,-!p3@MSC!1.38!26.09!MSC;;chr8:25902876..25902936,-!p1@EBF2!1.35!21.28!EBF2;;chr19:45971246..45971265,+!p1@FOSB!1.31!349.44!FOSB;;chr8:72756063..72756125,-!p1@MSC!1.28!36.39!MSC;;chr1:170632285..170632309,+!p1@PRRX1!1.28!20.37!PRRX1;;chr8:11561684..11561751,+!p1@GATA4!1.25!16.71!GATA4;;chr17:46132044..46132080,+!p4@NFE2L1!1.22!15.56!NFE2L1;;chr3:141105705..141105770,+!p4@ZBTB38!1.20!17.85!ZBTB38;;chr8:72756267..72756296,-!p4@MSC!1.19!21.28!MSC;;chr8:72756667..72756736,-!p2@MSC!1.18!22.20!MSC;;chr8:72755987..72756002,-!p7@MSC!1.13!12.36!MSC;;chr17:38256799..38256815,-!p3@NR1D1!1.12!22.20!NR1D1;;chr21:36260773..36260804,-!p7@RUNX1!1.08!14.87!RUNX1;;chr8:72756213..72756243,-!p5@MSC!1.08!14.19!MSC;;chr19:50432453..50432468,+!p1@ATF5!1.05!580.34!ATF5;;chr19:50435736..50435781,+!p3@ATF5!1.05!14.19!ATF5;;chr11:46299199..46299233,+!p1@CREB3L1!1.03!51.49!CREB3L1;;chr8:55370487..55370503,+!p1@SOX17!1.00!8.92!SOX17;;chr1:212782094..212782109,+!p1@ATF3!0.98!238.45!ATF3;;chr1:158979872..158979898,+!p3@IFI16!0.98!27.00!IFI16;;chr22:38598086..38598105,+!p1@MAFF!0.97!91.54!MAFF;;chr2:19558373..19558392,-!p1@OSR1!0.97!23.11!OSR1;;chr3:101568349..101568365,+!p1@NFKBIZ!0.94!412.60!NFKBIZ;;chr7:35293685..35293718,-!p1@TBX20!0.94!7.78!TBX20;;chr17:46126136..46126152,+!p1@NFE2L1!0.93!397.95!NFE2L1;;chr1:59249688..59249703,-!p3@JUN!0.93!47.37!JUN;;chr1:170633262..170633285,+!p3@PRRX1!0.93!8.70!PRRX1;;chr12:52445218..52445237,+!p1@NR4A1!0.92!95.43!NR4A1;;chr1:221052994..221053008,+!p6@HLX!0.91!8.47!HLX;;chr3:157823517..157823562,-!p1@SHOX2!0.90!7.55!SHOX2;;chr9:110252035..110252057,-!p1@KLF4!0.89!113.28!KLF4;;chr20:50179368..50179392,-!p2@NFATC2!0.88!8.70!NFATC2;;chr15:83953397..83953425,-!p1@BNC1!0.88!7.55!BNC1;;chr6:126102292..126102329,+!p3@NCOA7!0.87!22.43!NCOA7;;chr8:49833948..49833973,-!p2@SNAI2!0.86!41.65!SNAI2;;chr1:221053049..221053075,+!p3@HLX!0.86!11.21!HLX;;chr1:170632137..170632172,+!p10@PRRX1!0.86!6.18!PRRX1;;chr12:10870927..10870966,-!p5@CSDA!0.86!6.18!CSDA;;chr8:72756380..72756427,-!p8@MSC!0.86!6.18!MSC;;chr17:38256822..38256851,-!p1@NR1D1!0.85!51.03!NR1D1;;chr15:42749722..42749739,-!p2@ZFP106!0.85!11.21!ZFP106;;chr1:170633348..170633399,+!p2@PRRX1!0.85!8.47!PRRX1;;chr2:239756671..239756732,+!p1@TWIST2!0.84!19.91!TWIST2;;chr19:33865009..33865090,+!p3@CEBPG!0.84!8.01!CEBPG;;chr2:113994491..113994515,-!p7@PAX8!0.84!5.95!PAX8;;chr12:77459306..77459365,-!p1@E2F7!0.83!76.89!E2F7;;chr7:19157043..19157088,-!p2@TWIST1!0.83!15.10!TWIST1;;chr14:29235961..29236008,+!p1@FOXG1!0.83!5.72!FOXG1;;chr14:75745523..75745537,+!p1@FOS!0.80!684.92!FOS;;chr14:29234581..29234601,+!p2@FOXG1!0.80!5.26!FOXG1;;chr5:137804484..137804498,+!p2@EGR1!0.79!22.20!EGR1;;chr3:12329397..12329433,+!p2@PPARG!0.79!12.59!PPARG;;chr1:221052776..221052799,+!p1@HLX!0.79!9.84!HLX;;chr12:72056800..72056834,+!p1@THAP2!0.79!7.09!THAP2;;chr17:46128217..46128243,+!p11@NFE2L1!0.78!5.03!NFE2L1;;chrY:21906594..21906622,-!p1@KDM5D!0.78!5.03!KDM5D;;chr2:185463247..185463263,+!p1@ZNF804A!0.77!9.15!ZNF804A;;chr18:19749541..19749557,+!p1@GATA6!0.76!16.02!GATA6;;chr11:46299539..46299620,+!p2@CREB3L1!0.76!8.47!CREB3L1;;chr8:72756194..72756208,-!p9@MSC!0.76!4.81!MSC;;chr11:65687362..65687436,+!p3@DRAP1!0.75!22.88!DRAP1;;chr19:42636586..42636607,-!p1@POU2F2!0.75!13.73!POU2F2;;chr14:75746722..75746777,+!p2@FOS!0.75!6.18!FOS;;chrY:2803415..2803468,+!p1@ZFY!0.75!4.58!ZFY;;chr2:145275162..145275202,-!p2@ZEB2!0.74!29.29!ZEB2;;chr11:65686732..65686756,+!p2@DRAP1!0.74!21.05!DRAP1;;chr19:53360870..53360873,-!p1@ZNF468!0.74!18.08!ZNF468;;chr1:170632250..170632277,+!p7@PRRX1!0.73!4.35!PRRX1;;chr18:3450293..3450304,+!p4@TGIF1!0.72!11.44!TGIF1;;chr3:5021268..5021282,+!p4@BHLHE40!0.72!9.38!BHLHE40;;chr1:158979851..158979865,+!p5@IFI16!0.71!9.84!IFI16;;chr1:170632115..170632136,+!p9@PRRX1!0.71!4.12!PRRX1;;chr14:29236269..29236285,+!p3@FOXG1!0.71!4.12!FOXG1;;chr17:15689487..15689505,+!p@chr17:15689487..15689505,+!0.70!7.09!MEIS3P1;;chr8:49833978..49833996,-!p1@SNAI2!0.69!92.22!SNAI2;;chr8:72756023..72756055,-!p6@MSC!0.69!5.03!MSC;;chr8:72756251..72756262,-!p12@MSC!0.69!3.89!MSC;;chr3:141087454..141087465,+!p19@ZBTB38!0.69!3.89!ZBTB38;;chr4:174450089..174450153,-!p2@HAND2!0.69!3.89!HAND2;;chr2:70142232..70142251,+!p1@MXD1!0.68!24.26!MXD1;;chr3:114343768..114343822,-!p1@ZBTB20!0.68!18.54!ZBTB20;;chr2:239756739..239756755,+!p2@TWIST2!0.68!6.87!TWIST2;;chr20:6748325..6748352,+!p1@BMP2!0.68!5.72!BMP2;;chr9:110250697..110250738,-!p2@KLF4!0.68!4.58!KLF4;;chr6:126102339..126102351,+!p12@NCOA7!0.67!3.66!NCOA7;;chr1:158979792..158979814,+!p2@IFI16!0.66!39.36!IFI16;;chr22:38597987..38598021,+!p2@MAFF!0.66!24.94!MAFF;;chr2:157189180..157189290,-!p1@NR4A2!0.66!21.51!NR4A2;;chr19:16435523..16435619,+!p2@KLF2!0.65!5.03!KLF2;;chr16:31076332..31076388,-!p3@ZNF668!0.65!3.43!ZNF668;;chr2:102091566..102091581,-!p1@RFX8!0.65!3.43!RFX8;;chr3:178789522..178789564,-!p2@ZMAT3!0.64!28.83!ZMAT3;;chr11:65687158..65687216,+!p4@DRAP1!0.64!22.43!DRAP1;;chr12:80085255..80085284,-!p9@PAWR!0.64!5.26!PAWR;;chr11:65667846..65667868,-!p1@FOSL1!0.63!103.89!FOSL1;;chr18:3451646..3451691,+!p3@TGIF1!0.63!9.84!TGIF1;;chr22:38598057..38598071,+!p3@MAFF!0.63!8.47!MAFF;;chr2:46612334..46612349,+!p6@EPAS1!0.63!4.58!EPAS1;;chr18:3450334..3450341,+!p15@TGIF1!0.63!4.35!TGIF1;;chr12:54447599..54447630,+!p3@HOXC4!0.63!4.12!HOXC4;;chr5:137801160..137801176,+!p1@EGR1!0.62!376.44!EGR1;;chr1:151032782..151032801,+!p4@MLLT11!0.62!7.09!MLLT11;;chr5:72744445..72744466,-!p2@FOXD1!0.62!5.72!FOXD1;;chr18:19749386..19749404,+!p2@GATA6!0.62!4.81!GATA6;;chr1:170632477..170632506,+!p6@PRRX1!0.62!3.20!PRRX1;;chr2:102091144..102091183,-!p2@RFX8!0.62!3.20!RFX8;;chr7:14029283..14029311,-!p1@ETV1!0.61!19.45!ETV1;;chr10:111985713..111985774,+!p2@MXI1!0.60!34.33!MXI1;;chr18:3449527..3449582,+!p6@TGIF1!0.60!6.41!TGIF1;;chr12:72056749..72056767,+!p6@THAP2!0.60!3.43!THAP2;;chr10:64018918..64018936,+!p2@ZNF365!0.60!2.97!ZNF365;;chr1:170632051..170632081,+!p16@PRRX1!0.60!2.97!PRRX1;;chr7:44143925..44143970,+!p1@AEBP1!0.59!78.26!AEBP1;;chr10:63809106..63809127,+!p1@ARID5B!0.59!47.60!ARID5B;;chr7:19157248..19157268,-!p1@TWIST1!0.59!9.38!TWIST1;;chr3:126076264..126076305,-!p2@KLF15!0.59!4.35!KLF15;;chr18:3450161..3450183,+!p1@TGIF1!0.58!118.77!TGIF1;;chr20:50721803..50721857,-!p2@ZFP64!0.58!4.81!ZFP64;;chr1:221052840..221052875,+!p4@HLX!0.58!3.43!HLX;;chr3:141087393..141087426,+!p3@ZBTB38!0.57!13.04!ZBTB38;;chr10:64576105..64576133,-!p1@EGR2!0.57!6.41!EGR2;;chr7:28448995..28449011,+!p4@CREB5!0.57!4.12!CREB5;;chr7:115670804..115670825,-!p1@TFEC!0.57!2.75!TFEC;;chr1:170632028..170632043,+!p20@PRRX1!0.57!2.75!PRRX1;;chr1:221054853..221054873,+!p9@HLX!0.57!2.75!HLX;;chr21:30671690..30671762,+!p2@BACH1!0.56!10.76!BACH1;;chr7:44143978..44143989,+!p2@AEBP1!0.56!5.49!AEBP1;;chr15:37391271..37391376,-!p5@MEIS2!0.56!5.49!MEIS2;;chr16:86544113..86544145,+!p1@FOXF1!0.56!3.43!FOXF1;;chr1:170632959..170632987,+!p4@PRRX1!0.56!2.97!PRRX1;;chr13:45010939..45011033,-!p1@TSC22D1!0.55!215.57!TSC22D1;;chr14:62162285..62162296,+!p3@HIF1A!0.55!16.48!HIF1A;;chr12:66218598..66218645,+!p2@HMGA2!0.55!14.42!HMGA2;;chr18:3449821..3449860,+!p7@TGIF1!0.55!5.26!TGIF1;;chr19:47922750..47922795,-!p1@MEIS3!0.55!4.58!MEIS3;;chr1:170632683..170632696,+!p12@PRRX1!0.55!2.52!PRRX1;;chr7:1577899..1577943,+!p3@MAFK!0.55!2.52!MAFK;;chr19:16435625..16435682,+!p1@KLF2!0.54!101.83!KLF2;;chr2:101436564..101436647,+!p1@NPAS2!0.54!64.53!NPAS2;;chr17:46621937..46621966,-!p2@HOXB2!0.54!8.01!HOXB2;;chr17:46622070..46622109,-!p1@HOXB2!0.54!6.41!HOXB2;;chr17:20492136..20492165,+!p1@MEIS3P2!0.54!4.35!MEIS3P2;;chr12:26277817..26277863,-!p2@BHLHE41!0.54!3.66!BHLHE41;;chr9:35732647..35732678,+!p2@CREB3!0.53!16.71!CREB3;;chr2:178129358..178129403,-!p5@NFE2L2!0.53!11.90!NFE2L2;;chr5:321810..321877,+!p1@AHRR!0.53!9.15!AHRR;;chr9:110251836..110251887,-!p4@KLF4!0.53!3.43!KLF4;;chr3:126076242..126076257,-!p1@KLF15!0.53!3.20!KLF15;;chr12:56753869..56753930,-!p1@STAT2!0.52!133.41!STAT2;;chr1:37940170..37940190,+!p1@ZC3H12A!0.52!36.61!ZC3H12A;;chr7:28448965..28448994,+!p2@CREB5!0.52!10.07!CREB5;;chr18:3449586..3449617,+!p8@TGIF1!0.52!4.12!TGIF1;;chr22:38598042..38598052,+!p4@MAFF!0.52!4.12!MAFF;;chr1:158985493..158985535,+!p4@IFI16!0.52!3.89!IFI16;;chr5:137804130..137804156,+!p5@EGR1!0.52!2.52!EGR1;;chr1:170632723..170632739,+!p8@PRRX1!0.52!2.29!PRRX1;;chr11:65668011..65668020,-!p3@FOSL1!0.52!2.29!FOSL1;;chr12:66218904..66218913,+!p11@HMGA2!0.52!2.29!HMGA2;;chr15:67418177..67418204,+!p9@SMAD3!0.52!2.29!SMAD3;;chr12:57914286..57914304,-!p1@DDIT3!0.51!106.18!DDIT3;;chr14:62162258..62162269,+!p2@HIF1A!0.51!28.15!HIF1A;;chr9:132427972..132428056,+!p1@PRRX2!0.51!3.20!PRRX2;;chr22:29196433..29196445,-!p4@XBP1!0.51!2.52!XBP1;;chr10:22292613..22292674,-!p1@DNAJC1!0.50!85.13!DNAJC1;;chr4:4861385..4861398,+!p1@MSX1!0.50!8.01!MSX1;;chr12:66218255..66218304,+!p3@HMGA2!0.50!7.09!HMGA2;;chr6:126240380..126240430,+!p2@NCOA7!0.50!6.87!NCOA7;;chr6:32095523..32095564,-!p2@ATF6B!0.50!3.20!ATF6B;;chr2:8822176..8822196,+!p1@ID2!0.49!398.18!ID2;;chr20:48807351..48807384,+!p1@CEBPB!0.49!290.63!CEBPB;;chr9:35732592..35732640,+!p1@CREB3!0.49!36.84!CREB3;;chr12:26277956..26277980,-!p1@BHLHE41!0.49!9.61!BHLHE41;;chr10:22292591..22292606,-!p2@DNAJC1!0.49!3.89!DNAJC1;;chr2:85980951..85981004,+!p1@ATOH8!0.49!3.89!ATOH8;;chr12:72056773..72056796,+!p3@THAP2!0.49!2.97!THAP2;;chr17:46675420..46675465,-!p3@HOXB6!0.49!2.52!HOXB6;;chr3:21792790..21792824,-!p4@ZNF385D!0.49!2.06!ZNF385D;;chr7:27169801..27169844,-!p2@HOXA4!0.49!2.06!HOXA4;;chr7:27183263..27183284,-!p2@HOXA5!0.49!2.06!HOXA5;;chr7:28449015..28449024,+!p6@CREB5!0.49!2.06!CREB5;;chr8:72756522..72756533,-!p13@MSC!0.49!2.06!MSC;;chr10:45495946..45495976,+!p2@ZNF22!0.49!2.06!ZNF22;;chr1:170633245..170633256,+!p14@PRRX1!0.49!2.06!PRRX1;;chr1:221053444..221053473,+!p8@HLX!0.49!2.06!HLX;;chr7:17338266..17338282,+!p1@AHR!0.48!29.29!AHR;;chr5:72744594..72744609,-!p1@FOXD1!0.48!11.90!FOXD1;;chr8:22550982..22550999,-!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622;;chr14:21566731..21566836,-!p1@ZNF219!0.22!15.56!ZNF219;;chr10:104155480..104155534,+!p2@NFKB2!0.22!9.15!NFKB2;;chr19:4067039..4067064,-!p3@ZBTB7A!0.22!3.66!ZBTB7A;;chr16:3185125..3185173,+!p1@ZNF213!0.22!2.97!ZNF213;;chr5:158526917..158526932,-!p1@EBF1!0.22!2.97!EBF1;;chr2:121493425..121493474,+!p1@GLI2!0.22!2.52!GLI2;;chr13:45151403..45151433,-!p5@TSC22D1!0.22!2.52!TSC22D1;;chr12:52430894..52430952,+!p3@NR4A1!0.22!2.06!NR4A1;;chr10:3824332..3824425,-!p4@KLF6!0.22!1.60!KLF6;;chr1:151043070..151043110,+!p3@GABPB2!0.22!1.60!GABPB2;;chr19:13134772..13134822,+!p2@NFIX!0.22!1.37!NFIX;;chr15:96881221..96881240,+!p19@NR2F2!0.22!1.14!NR2F2;;chr16:4365715..4365746,+!p@chr16:4365715..4365746,+!0.22!1.14!GLIS2;;chr17:46621311..46621332,-!p8@HOXB2!0.22!1.14!HOXB2;;chr19:18391615..18391637,-!p5@JUND!0.22!1.14!JUND;;chr6:21594391..21594431,+!p9@SOX4!0.22!1.14!SOX4;;chr9:128510454..128510469,+!p3@PBX3!0.22!1.14!PBX3;;chr3:170076314..170076334,+!p2@SKIL!0.22!1.14!SKIL;;chr4:81118647..81118666,+!p1@PRDM8!0.22!1.14!PRDM8;;chr11:65430535..65430549,-!p4@RELA!0.22!0.92!RELA;;chr7:4815238..4815327,+!p1@KIAA0415!0.21!32.04!AP5Z1;;chr1:59249732..59249749,-!p2@JUN!0.21!17.16!JUN;;chr19:53400852..53400962,-!p1@ZNF320!0.21!14.19!ZNF320;;chr15:96874012..96874042,+!p2@NR2F2!0.21!12.59!NR2F2;;chr16:88519669..88519726,+!p1@ZFPM1!0.21!12.59!ZFPM1;;chr19:4065485..4065546,-!p2@ZBTB7A!0.21!12.36!ZBTB7A;;chr11:62368696..62368759,-!p4@MTA2!0.21!8.47!MTA2;;chr19:36706055..36706074,+!p3@ZNF146!0.21!6.18!ZNF146;;chr9:2158443..2158481,+!p2@SMARCA2!0.21!3.43!SMARCA2;;chr19:8578683..8578750,-!p2@ZNF414!0.21!2.29!ZNF414;;chr3:52001396..52001425,-!p4@PCBP4!0.21!1.83!PCBP4;;chr8:182368..182402,+!p2@ZNF596!0.21!1.83!ZNF596;;chr5:174151553..174151610,+!p1@MSX2!0.21!1.60!MSX2;;chr20:48807615..48807644,+!p6@CEBPB!0.21!1.60!CEBPB;;chr9:14082760..14082775,-!p6@NFIB!0.21!1.60!NFIB;;chr15:100106670..100106697,+!p4@MEF2A!0.21!1.60!MEF2A;;chr15:57211660..57211687,+!p6@TCF12!0.21!1.60!TCF12;;chr16:30418894..30418909,+!p2@ZNF771!0.21!1.60!ZNF771;;chr19:57999082..57999095,+!p2@ZNF419!0.21!1.37!ZNF419;;chr12:125002739..125002756,-!p6@NCOR2!0.21!1.37!NCOR2;;chr22:42269885..42269899,+!p4@SREBF2!0.21!1.37!SREBF2;;chr21:36260463..36260480,-!p9@RUNX1!0.21!1.14!RUNX1;;chr6:15249097..15249115,+!p7@JARID2!0.21!1.14!JARID2;;chr8:145535860..145535895,+!p2@HSF1!0.21!1.14!HSF1;;chr17:46621101..46621143,-!p7@HOXB2!0.21!1.14!HOXB2;;chr19:13136241..13136258,+!p7@NFIX!0.21!1.14!NFIX;;chr5:137804357..137804390,+!p4@EGR1!0.21!0.92!EGR1;;chr3:52008016..52008071,-!p1@ABHD14A-ACY1,p1@ABHD14B,p1@PCBP4!0.20!82.38!PCBP4;;chr9:94186101..94186122,-!p1@NFIL3!0.20!19.45!NFIL3;;chr19:44100728..44100804,+!p1@SRRM5,p1@ZNF576!0.20!13.27!ZNF576;;chr20:23342783..23342857,+!p1@GZF1!0.20!12.59!GZF1;;chr19:18392274..18392286,-!p3@JUND!0.20!8.70!JUND;;chr3:39195037..39195069,-!p2@CSRNP1!0.20!8.24!CSRNP1;;chr6:19837592..19837621,+!p1@ID4!0.20!8.01!ID4;;chr13:45151259..45151326,-!p2@TSC22D1!0.20!7.78!TSC22D1;;chr12:133707204..133707236,+!p1@ZNF10,p2@ZNF268!0.20!7.32!ZNF10;;chr11:46722560..46722595,+!p1@ZNF408!0.20!6.87!ZNF408;;chr6:20403916..20403965,+!p3@E2F3!0.20!5.72!E2F3;;chr7:149470641..149470694,-!p1@ZNF467!0.20!5.72!ZNF467;;chr19:46272462..46272562,-!p1@SIX5!0.20!5.26!SIX5;;chr2:85197924..85197955,+!p3@KCMF1!0.20!4.58!KCMF1;;chr8:128750555..128750609,+!p5@MYC!0.20!2.06!MYC;;chr15:96874063..96874074,+!p10@NR2F2!0.20!1.83!NR2F2;;chr10:22292675..22292686,-!p3@DNAJC1!0.20!1.60!DNAJC1;;chr19:44669280..44669294,+!p4@ZNF226,p4@ZNF234!0.20!1.37!ZNF226;;chr19:57078972..57079027,+!p2@ZNF470!0.20!1.37!ZNF470;;chr18:3449695..3449712,+!p9@TGIF1!0.20!1.37!TGIF1;;chr19:12444519..12444537,-!p3@ZNF563!0.20!1.37!ZNF563;;chr9:102584241..102584261,+!p4@NR4A3!0.20!1.37!NR4A3;;chr19:18391652..18391669,-!p8@JUND!0.20!1.14!JUND;;chr10:22292509..22292523,-!p4@DNAJC1!0.20!0.92!DNAJC1;;chr10:44144187..44144201,-!p3@ZNF32!0.20!0.92!ZNF32;;chr14:24630902..24630948,+!p2@IRF9!0.20!0.92!IRF9;;chr3:114343195..114343206,-!p11@ZBTB20!0.20!0.92!ZBTB20;;chr3:141121369..141121392,+!p14@ZBTB38!0.20!0.92!ZBTB38;;chr19:58341656..58341694,+!p5@ZNF587!0.20!0.92!ZNF587;;chr12:57853565..57853579,+!p1@GLI1!0.20!0.69!GLI1;;chr3:12329320..12329338,+!p4@PPARG!0.20!0.69!PPARG;;chr19:18392422..18392440,-!p1@JUND!0.19!193.14!JUND;;chr17:7590797..7590815,-!p1@TP53!0.19!60.87!TP53;;chr6:155635583..155635644,-!p1@TFB1M!0.19!17.62!TFB1M;;chrX:128657457..128657475,-!p1@SMARCA1!0.19!15.56!SMARCA1;;chr11:118992269..118992334,+!p1@HINFP!0.19!11.44!HINFP;;chr16:71496112..71496160,-!p1@ZNF23!0.19!5.72!ZNF23;;chrX:83757450..83757485,-!p1@HDX!0.19!5.26!HDX;;chr2:27357446..27357475,-!p2@PREB!0.19!4.12!PREB;;chr9:73029219..73029289,-!p2@KLF9!0.19!3.43!KLF9;;chr12:53856284..53856299,+!p3@PCBP2!0.19!3.20!PCBP2;;chr2:178128250..178128293,-!p6@NFE2L2!0.19!2.75!NFE2L2;;chr4:121843844..121843904,-!p1@PRDM5!0.19!2.52!PRDM5;;chr11:58346585..58346607,+!p2@ZFP91!0.19!2.52!ZFP91;;chr12:53848505..53848532,+!p4@PCBP2!0.19!2.29!PCBP2;;chr3:125094150..125094176,-!p2@ZNF148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+|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000034;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000133;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000134;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000221;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000222;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000569;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002494;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000948
 |ffid_belonging_in_development=CL:0000133,CL:0000134,CL:0000011,CL:0000221
 |fonse_cell_line=
@@ Line 41: / Line 42: @@
 |fonse_treatment_closure=
 |has_quality=
+|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/mesenchymal%2520precursor%2520cell%2520-%2520cardiac%252c%2520donor1.CNhs12368.11752-123G6.hg19.nobarcode.bam
+|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/mesenchymal%2520precursor%2520cell%2520-%2520cardiac%252c%2520donor1.CNhs12368.11752-123G6.hg19.ctss.bed.gz
+|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/mesenchymal%2520precursor%2520cell%2520-%2520cardiac%252c%2520donor1.CNhs12368.11752-123G6.hg19.nobarcode.rdna.fa.gz
+|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/mesenchymal%2520precursor%2520cell%2520-%2520cardiac%252c%2520donor1.CNhs12368.11752-123G6.hg38.nobarcode.bam
+|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/mesenchymal%2520precursor%2520cell%2520-%2520cardiac%252c%2520donor1.CNhs12368.11752-123G6.hg38.nobarcode.ctss.bed.gz
 |id=FF:11752-123G6
 |is_a=EFO:0002091;;FF:0000271
 |is_obsolete=
 |library_id=CNhs12368
-|library_id_phase_based=1:CNhs12368
+|library_id_phase_based=2:CNhs12368
+|microRNAs=
+|microRNAs_nn=
+|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11752
+|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11752
 |name=mesenchymal precursor cell - cardiac, donor1
 |namespace=FANTOM5
@@ Line 51: / Line 61: @@
 |profile_cagescan=,,,
 |profile_hcage=CNhs12368,LSID914,release011,COMPLETED
-|profile_rnaseq=,,,
+|profile_rnaseq=
 |profile_srnaseq=,,,
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+|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11752-123G6;search_select_hide=table117:FF:11752-123G6
 }}

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FF:11752-123G6: Difference between revisions

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Latest revision as of 18:17, 4 June 2020

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	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0