FF:11763-123H8: Difference between revisions

Latest revision as of 18:18, 4 June 2020

Name:	tenocyte, donor1
Species:	Human (Homo sapiens)
Library ID:	CNhs12639
Sample type:	primary cells
Genomic View:	UCSC
RefEX:	Specific genes
FANTOM CAT:	1, 2, 3
CAGEd-oPOSSUM:	link
ZENBU report :	link

Additional information

Sample information

strain	NA
tissue	tendon
dev stage	NA
sex	NA
age	NA
cell type	tenocyte
cell line	NA
company	NA
collaboration	Gundula Schulze-Tanzil
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	NA
catalog number	NA
sample type	NA
extraction protocol (Details)	NA

CAGE Accession numbers

Method		Sample accession id
CAGE		SAMD00005664

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs12639		CAGE		DRX008576		DRR009448

Accession ID Hg19

Library id		BAM		CTSS
CNhs12639		DRZ000873		DRZ002258

Accession ID Hg38

Library id		BAM		CTSS
CNhs12639		DRZ012223		DRZ013608

Download raw sequence, BAM & CTSS

Hg19

Fasta	BAM	CTSS
download	download	donwload

Hg38

BAM	CTSS
download	donwload

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

Coexpression cluster	score
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral	0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate	0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural	0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial	0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel	0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS	0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils	0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural	0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis	0.131
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy	0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood	0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate	0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma	0.0594
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial	0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic	0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat	0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal	0
C113-thyroid-throat-lung-lymph-small-colon-trachea	0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma	0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus	0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea	0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal	0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula	0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD19	0
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils	0
C120-immature-salivary-tongue-skin-cervical-CD14-CD34	0
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B	0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal	0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils	0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte	0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus	0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain	0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil	0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP	0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small	0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD4	0
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar	0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin	0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived	0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma	0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis	0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum	0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal	0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic	0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal	0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal	0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen	0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen	0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B	0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair	0.818
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast	0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis	0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal	0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell	0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral	0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal	0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum	0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue	0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small	0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast	0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung	0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular	0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate	0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid	0
C156-plasma-splenic-hereditary-B-large-xeroderma-b	0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea	0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen	0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal	0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain	0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral	0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta	0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon	0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal	0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma	0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial	0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung	0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD4	0
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral	0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma	0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage	0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet	0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye	0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes	0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose	0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils	0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural	-0.00883
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19	-0.122
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous	0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus	0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil	0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood	0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle	0.163
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar	0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute	0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt	0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid	0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis	0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid	0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage	0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat	0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen	0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma	0
C190-colon-small-rectum-duodenum-appendix-temporal-oral	0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic	0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD4	0
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD14	0.0899
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar	0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal	0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial	0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival	0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes	1.078
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma	0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast	0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat	0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed	0.469
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall	0
C202-salivary-skin-penis-tongue-uterus-cervical-immature	0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic	0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD34	0
C205-mycosis-cord-hairy-xeroderma-CD4-B-b	0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary	0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte	0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous	0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen	0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic	0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil	0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney	0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD34	0
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral	0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain	0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature	0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD34	0
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital	0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary	0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum	0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD19	0
C220-Adipocyte-mature-left-breast-skin-liver-adipose	0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular	0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte	0.581
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte	0.137
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal	0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal	0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal	0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue	0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult	0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart	0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD14	0
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung	0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis	0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum	0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF7	0
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma	0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas	0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma	0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial	0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell	0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy	0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral	0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal	0.557
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus	0.0721
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach	0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing	0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage	0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic	0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory	0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital	0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast	0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial	0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall	0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD4	0.0761
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue	0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma	0.189
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum	0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris	0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast	0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla	0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral	0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric	0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing	0.674
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole	0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood	0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal	0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms	0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil	0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute	0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8	-0.0385
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast	0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear	0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate	0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD4	0
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung	0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth	0
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum	0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil	0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast	0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte	0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal	0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal	0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma	0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory	0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial	0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic	0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD4	0
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small	0.0483
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat	0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular	0.793
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus	0.326
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic	0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial	0.242
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal	0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal	1.158
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left	0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart	0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature	0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea	0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal	1.104
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD34	0
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral	0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte	0.988
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed	0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral	0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital	0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood	0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala	0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal	0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils	0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic	0.396
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid	0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole	0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus	0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea	0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory	0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen	0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile	0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula	0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt	0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea	0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms	0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD133	0
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus	0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small	0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal	0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon	0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder	0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature	0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS	0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel	0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix	0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus	0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma	0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas	0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma	0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas	0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma	0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary	0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature	0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma	0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue	0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural	0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H9	0
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic	1.3
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature	0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical	0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b	0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph	0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute	0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic	0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils	0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus	0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung	0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma	0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK	0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast	0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue	0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate	0.0905
C72-skeletal-tongue-throat-heart-diaphragm-penis-left	0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal	0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy	0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral	0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell	0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD8	0
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea	0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal	0.842
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD34	0
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast	0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid	0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD34	0
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic	0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon	0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma	0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma	0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic	0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived	0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic	0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left	0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen	0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair	0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole	0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular	0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma	0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid	0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix	0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain	0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole	0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs12639

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	0.339
MA0003.1	MA0003.1	0.153
MA0004.1	MA0004.1	0.143
MA0006.1	MA0006.1	0.159
MA0007.1	MA0007.1	0.391
MA0009.1	MA0009.1	0.723
MA0014.1	MA0014.1	0.295
MA0017.1	MA0017.1	0.687
MA0018.2	MA0018.2	7.18615e-6
MA0019.1	MA0019.1	0.826
MA0024.1	MA0024.1	0.028
MA0025.1	MA0025.1	8.19682e-5
MA0027.1	MA0027.1	0.698
MA0028.1	MA0028.1	6.70943e-4
MA0029.1	MA0029.1	0.63
MA0030.1	MA0030.1	0.04
MA0031.1	MA0031.1	0.125
MA0035.2	MA0035.2	0.0108
MA0038.1	MA0038.1	0.0159
MA0039.2	MA0039.2	0.0189
MA0040.1	MA0040.1	0.914
MA0041.1	MA0041.1	0.596
MA0042.1	MA0042.1	0.876
MA0043.1	MA0043.1	1.69978e-6
MA0046.1	MA0046.1	0.125
MA0047.2	MA0047.2	0.539
MA0048.1	MA0048.1	0.251
MA0050.1	MA0050.1	0.828
MA0051.1	MA0051.1	0.807
MA0052.1	MA0052.1	0.0111
MA0055.1	MA0055.1	0.9
MA0057.1	MA0057.1	0.218
MA0058.1	MA0058.1	0.0509
MA0059.1	MA0059.1	0.943
MA0060.1	MA0060.1	8.05676e-8
MA0061.1	MA0061.1	0.869
MA0062.2	MA0062.2	1.98279e-11
MA0065.2	MA0065.2	0.442
MA0066.1	MA0066.1	0.254
MA0067.1	MA0067.1	8.60774e-4
MA0068.1	MA0068.1	0.186
MA0069.1	MA0069.1	0.254
MA0070.1	MA0070.1	0.534
MA0071.1	MA0071.1	0.701
MA0072.1	MA0072.1	0.24
MA0073.1	MA0073.1	0.947
MA0074.1	MA0074.1	0.0623
MA0076.1	MA0076.1	5.23971e-5
MA0077.1	MA0077.1	0.387
MA0078.1	MA0078.1	0.731
MA0079.2	MA0079.2	0.748
MA0080.2	MA0080.2	2.37553e-8
MA0081.1	MA0081.1	0.00455
MA0083.1	MA0083.1	0.715
MA0084.1	MA0084.1	0.27
MA0087.1	MA0087.1	0.783
MA0088.1	MA0088.1	0.848
MA0090.1	MA0090.1	0.118
MA0091.1	MA0091.1	0.0251
MA0092.1	MA0092.1	0.317
MA0093.1	MA0093.1	0.104
MA0099.2	MA0099.2	2.39216e-5
MA0100.1	MA0100.1	0.687
MA0101.1	MA0101.1	0.049
MA0102.2	MA0102.2	0.133
MA0103.1	MA0103.1	0.144
MA0104.2	MA0104.2	0.0681
MA0105.1	MA0105.1	0.292
MA0106.1	MA0106.1	0.0609
MA0107.1	MA0107.1	0.0637
MA0108.2	MA0108.2	0.623
MA0111.1	MA0111.1	0.95
MA0112.2	MA0112.2	3.23149e-4
MA0113.1	MA0113.1	0.812
MA0114.1	MA0114.1	0.912
MA0115.1	MA0115.1	0.802
MA0116.1	MA0116.1	0.0289
MA0117.1	MA0117.1	0.193
MA0119.1	MA0119.1	0.194
MA0122.1	MA0122.1	0.285
MA0124.1	MA0124.1	0.0574
MA0125.1	MA0125.1	0.2
MA0131.1	MA0131.1	0.0816
MA0135.1	MA0135.1	0.61
MA0136.1	MA0136.1	4.70391e-13
MA0137.2	MA0137.2	0.673
MA0138.2	MA0138.2	0.074
MA0139.1	MA0139.1	0.806
MA0140.1	MA0140.1	0.0469
MA0141.1	MA0141.1	0.249
MA0142.1	MA0142.1	0.27
MA0143.1	MA0143.1	0.443
MA0144.1	MA0144.1	0.846
MA0145.1	MA0145.1	0.15
MA0146.1	MA0146.1	0.533
MA0147.1	MA0147.1	0.183
MA0148.1	MA0148.1	0.781
MA0149.1	MA0149.1	0.912
MA0150.1	MA0150.1	0.00252
MA0152.1	MA0152.1	0.0128
MA0153.1	MA0153.1	0.49
MA0154.1	MA0154.1	0.0978
MA0155.1	MA0155.1	0.148
MA0156.1	MA0156.1	1.74746e-11
MA0157.1	MA0157.1	0.743
MA0159.1	MA0159.1	0.714
MA0160.1	MA0160.1	0.318
MA0162.1	MA0162.1	0.0654
MA0163.1	MA0163.1	2.18302e-4
MA0164.1	MA0164.1	0.917
MA0258.1	MA0258.1	0.0836
MA0259.1	MA0259.1	0.11

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs12639

Novel motif	Logo	P-value
1	1	0.424
10	10	0.526
100	100	0.55
101	101	0.306
102	102	0.237
103	103	0.0777
104	104	0.804
105	105	0.114
106	106	0.225
107	107	0.0316
108	108	0.301
109	109	0.412
11	11	0.271
110	110	0.23
111	111	0.697
112	112	0.553
113	113	0.0174
114	114	0.188
115	115	0.0339
116	116	0.0586
117	117	0.985
118	118	0.932
119	119	0.626
12	12	0.235
120	120	0.652
121	121	0.48
122	122	0.0219
123	123	0.0165
124	124	0.718
125	125	0.686
126	126	0.864
127	127	0.822
128	128	0.0797
129	129	0.611
13	13	0.639
130	130	0.536
131	131	0.79
132	132	0.236
133	133	0.142
134	134	0.635
135	135	0.504
136	136	0.759
137	137	0.599
138	138	0.744
139	139	0.636
14	14	0.509
140	140	0.725
141	141	0.46
142	142	0.779
143	143	0.661
144	144	0.29
145	145	0.754
146	146	0.987
147	147	0.297
148	148	0.808
149	149	0.0169
15	15	0.786
150	150	0.215
151	151	0.486
152	152	0.132
153	153	0.986
154	154	0.846
155	155	0.2
156	156	0.532
157	157	0.349
158	158	0.0123
159	159	0.628
16	16	0.00627
160	160	0.351
161	161	0.938
162	162	0.245
163	163	0.871
164	164	0.142
165	165	0.841
166	166	0.0452
167	167	0.454
168	168	0.649
169	169	0.019
17	17	0.351
18	18	0.361
19	19	0.00191
2	2	0.2
20	20	0.333
21	21	0.0379
22	22	0.273
23	23	0.155
24	24	0.329
25	25	0.474
26	26	0.217
27	27	0.355
28	28	0.238
29	29	0.248
3	3	0.427
30	30	0.434
31	31	0.443
32	32	5.53423e-20
33	33	0.884
34	34	0.584
35	35	0.833
36	36	0.05
37	37	0.0973
38	38	0.912
39	39	0.268
4	4	0.833
40	40	0.229
41	41	0.282
42	42	0.75
43	43	0.426
44	44	0.067
45	45	0.733
46	46	0.161
47	47	0.912
48	48	0.79
49	49	0.962
5	5	0.996
50	50	0.532
51	51	0.642
52	52	0.583
53	53	0.191
54	54	0.651
55	55	0.423
56	56	0.791
57	57	0.97
58	58	0.45
59	59	0.0107
6	6	0.31
60	60	0.6
61	61	0.789
62	62	0.824
63	63	0.196
64	64	0.785
65	65	0.327
66	66	0.229
67	67	0.852
68	68	0.395
69	69	0.515
7	7	0.495
70	70	0.32
71	71	0.389
72	72	0.799
73	73	0.111
74	74	0.246
75	75	0.849
76	76	0.966
77	77	0.0389
78	78	0.544
79	79	5.70064e-5
8	8	0.0859
80	80	0.0945
81	81	0.391
82	82	0.433
83	83	0.298
84	84	0.311
85	85	0.258
86	86	0.489
87	87	0.273
88	88	0.42
89	89	0.0392
9	9	0.517
90	90	0.875
91	91	0.535
92	92	0.236
93	93	0.44
94	94	0.663
95	95	0.994
96	96	0.861
97	97	0.325
98	98	0.97
99	99	0.00177

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs12639

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
EFO:0002091 biological replicate
FF:0000280 human tenocyte sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0002320 (connective tissue cell)
0002371 (somatic cell)
0000499 (stromal cell)
0000630 (supportive cell)
0000135 (fibrocyte)
0000386 (attachment cell)
0000255 (eukaryotic cell)
0000388 (tendon cell)

UBERON: Anatomy
0000468 (multi-cellular organism)
0002384 (connective tissue)
0000479 (tissue)
0007846 (dense regular connective tissue)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0000043 (tendon)
0007845 (regular connective tissue)
0002204 (musculoskeletal system)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000280 (human tenocyte sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
CL:0000134 (mesenchymal cell)

@@ Line 1: / Line 1: @@
 {{f5samples
+|DRA_sample_Accession=CAGE@SAMD00005664
+|accession_numbers=CAGE;DRX008576;DRR009448;DRZ000873;DRZ002258;DRZ012223;DRZ013608
 |ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0002384,UBERON:0000479,UBERON:0007846,UBERON:0000061,UBERON:0000465,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0000043,UBERON:0007845,UBERON:0002204
 |ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0002320,CL:0002371,CL:0000499,CL:0000630,CL:0000135,CL:0000386,CL:0000255,CL:0000388
@@ Line 7: / Line 9: @@
 |created_by=
 |creation_date=
-|datafreeze_phase=1
+|data_phase=2
+|datafreeze_phase=2
 |def=
 |expression_enrichment_score=chr7:15726296..15726315,-!p1@MEOX2!1.97!92.63!MEOX2;;chr1:170632285..170632309,+!p1@PRRX1!1.93!95.60!PRRX1;;chr10:28034739..28034756,-!p1@MKX!1.92!82.95!MKX;;chr9:132427883..132427951,+!p2@PRRX2!1.86!71.80!PRRX2;;chr19:13134772..13134822,+!p2@NFIX!1.81!91.14!NFIX;;chr9:132427972..132428056,+!p1@PRRX2!1.74!70.31!PRRX2;;chr12:54410664..54410684,+!p1@HOXC4,p1@HOXC5,p1@HOXC6!1.66!45.01!HOXC5;;chr1:170633348..170633399,+!p2@PRRX1!1.59!51.34!PRRX1;;chr15:57511609..57511651,+!p2@TCF12!1.56!57.66!TCF12;;chr7:15726243..15726293,-!p2@MEOX2!1.53!33.11!MEOX2;;chr2:19558373..19558392,-!p1@OSR1!1.52!85.93!OSR1;;chr5:134369905..134369972,-!p1@PITX1!1.52!48.73!PITX1;;chr7:19157248..19157268,-!p1@TWIST1!1.51!85.19!TWIST1;;chr11:46299199..46299233,+!p1@CREB3L1!1.49!148.80!CREB3L1;;chr14:61116183..61116208,-!p1@SIX1!1.39!86.30!SIX1;;chr2:45236540..45236577,-!p1@SIX2!1.37!22.69!SIX2;;chr11:46299539..46299620,+!p2@CREB3L1!1.35!36.08!CREB3L1;;chr5:134369879..134369898,-!p2@PITX1!1.35!21.58!PITX1;;chr1:170632477..170632506,+!p6@PRRX1!1.34!20.83!PRRX1;;chr1:170633262..170633285,+!p3@PRRX1!1.33!23.44!PRRX1;;chr10:131762504..131762555,-!p1@EBF3!1.32!20.09!EBF3;;chr14:24837368..24837401,+!p1@NFATC4!1.28!42.41!NFATC4;;chr6:1312325..1312340,+!p1@FOXQ1!1.21!24.55!FOXQ1;;chr2:239756671..239756732,+!p1@TWIST2!1.20!46.87!TWIST2;;chr1:170633058..170633084,+!p5@PRRX1!1.20!14.88!PRRX1;;chr6:45296048..45296082,+!p1@RUNX2!1.19!16.74!RUNX2;;chr7:15726176..15726191,-!p3@MEOX2!1.18!14.14!MEOX2;;chr6:85474299..85474324,-!p1@TBX18!1.17!24.92!TBX18;;chr12:54380404..54380433,+!p3@HOXC10!1.17!13.76!HOXC10;;chr12:54410639..54410659,+!p2@HOXC4,p2@HOXC5,p2@HOXC6!1.17!13.76!HOXC5;;chr7:15725757..15725828,-!p5@MEOX2!1.16!13.39!MEOX2;;chr1:170632250..170632277,+!p7@PRRX1!1.16!13.39!PRRX1;;chr4:174451370..174451387,-!p1@HAND2!1.16!13.39!HAND2;;chr2:239756739..239756755,+!p2@TWIST2!1.15!22.69!TWIST2;;chr8:25902876..25902936,-!p1@EBF2!1.14!12.65!EBF2;;chr19:13136241..13136258,+!p7@NFIX!1.13!16.74!NFIX;;chr1:170632723..170632739,+!p8@PRRX1!1.12!12.28!PRRX1;;chr7:44143925..44143970,+!p1@AEBP1!1.09!252.21!AEBP1;;chr4:26322267..26322334,+!p3@RBPJ!1.08!26.78!RBPJ;;chr3:157823517..157823562,-!p1@SHOX2!1.07!11.53!SHOX2;;chr7:15726220..15726236,-!p4@MEOX2!1.07!10.79!MEOX2;;chr12:54393880..54393962,+!p1@HOXC9!1.07!10.79!HOXC9;;chr5:321810..321877,+!p1@AHRR!1.06!33.48!AHRR;;chr12:54402745..54402788,+!p1@HOXC8!1.04!10.04!HOXC8;;chr2:102091144..102091183,-!p2@RFX8!1.04!10.04!RFX8;;chr2:176994408..176994492,+!p1@HOXD8!1.04!10.04!HOXD8;;chr7:19157043..19157088,-!p2@TWIST1!1.03!24.92!TWIST1;;chr1:170632439..170632465,+!p11@PRRX1!1.03!9.67!PRRX1;;chr10:28032421..28032494,-!p2@MKX!1.01!9.30!MKX;;chr19:13135582..13135600,+!p3@NFIX!1.00!8.93!NFIX;;chrY:21906594..21906622,-!p1@KDM5D!1.00!8.93!KDM5D;;chr7:15726206..15726217,-!p6@MEOX2!0.98!8.56!MEOX2;;chr12:54378923..54378966,+!p1@HOXC10!0.98!8.56!HOXC10;;chr12:54379029..54379057,+!p2@HOXC10!0.98!8.56!HOXC10;;chr19:13136130..13136165,+!p6@NFIX!0.97!11.16!NFIX;;chr19:13106214..13106382,+!p1@NFIX!0.96!192.69!NFIX;;chr1:170632959..170632987,+!p4@PRRX1!0.96!8.93!PRRX1;;chr1:170632683..170632696,+!p12@PRRX1!0.96!8.18!PRRX1;;chr6:1389789..1389821,+!p1@FOXF2!0.95!11.16!FOXF2;;chr10:31610110..31610159,+!p2@ZEB1!0.95!7.81!ZEB1;;chr12:53614115..53614154,-!p1@RARG!0.93!41.29!RARG;;chr14:62203595..62203676,+!p4@HIF1A!0.93!14.51!HIF1A;;chr9:16870659..16870675,-!p2@BNC2!0.93!9.30!BNC2;;chr7:15726064..15726103,-!p8@MEOX2!0.93!7.44!MEOX2;;chr1:170632762..170632786,+!p13@PRRX1!0.93!7.44!PRRX1;;chr8:49833978..49833996,-!p1@SNAI2!0.92!155.49!SNAI2;;chr11:65686802..65686818,+!p6@DRAP1!0.91!12.65!DRAP1;;chr20:51588873..51588953,+!p1@TSHZ2!0.90!9.30!TSHZ2;;chr14:61116168..61116180,-!p2@SIX1!0.89!7.81!SIX1;;chr4:26323870..26323885,+!p13@RBPJ!0.89!6.70!RBPJ;;chr1:170633194..170633205,+!p18@PRRX1!0.89!6.70!PRRX1;;chr20:39317868..39317884,-!p1@MAFB!0.86!79.23!MAFB;;chr8:49833948..49833973,-!p2@SNAI2!0.86!42.04!SNAI2;;chr2:102091566..102091581,-!p1@RFX8!0.86!6.32!RFX8;;chr4:26323764..26323821,+!p15@RBPJ!0.86!6.32!RBPJ;;chr11:65686732..65686756,+!p2@DRAP1!0.85!27.53!DRAP1;;chr7:44143978..44143989,+!p2@AEBP1!0.85!11.53!AEBP1;;chr10:31607702..31607755,+!p3@ZEB1!0.85!7.07!ZEB1;;chr10:28035133..28035148,-!p3@MKX!0.84!5.95!MKX;;chr12:54378984..54378996,+!p7@HOXC10!0.84!5.95!HOXC10;;chr7:15725973..15725985,-!p10@MEOX2!0.84!5.95!MEOX2;;chr7:15725992..15726043,-!p7@MEOX2!0.84!5.95!MEOX2;;chr16:4366053..4366076,+!p@chr16:4366053..4366076,+!0.83!62.50!GLIS2;;chr7:42276787..42276815,-!p1@GLI3!0.82!16.00!GLI3;;chr5:158526917..158526932,-!p1@EBF1!0.82!14.88!EBF1;;chr7:27213893..27213954,-!p1@HOXA10!0.82!5.58!HOXA10;;chr1:170632310..170632321,+!p15@PRRX1!0.82!5.58!PRRX1;;chr1:170632325..170632339,+!p24@PRRX1!0.82!5.58!PRRX1;;chr1:44513995..44514031,+!p1@KLF17!0.82!5.58!KLF17;;chr2:45236579..45236596,-!p2@SIX2!0.82!5.58!SIX2;;chr11:46333934..46333963,+!p5@CREB3L1!0.82!5.58!CREB3L1;;chr19:58373157..58373159,+!p4@ZNF587!0.81!10.42!ZNF587;;chr3:21792585..21792625,-!p2@ZNF385D!0.80!5.95!ZNF385D;;chr1:54204818..54204870,-!p@chr1:54204818..54204870,-!0.79!5.58!GLIS1;;chr1:170633245..170633256,+!p14@PRRX1!0.79!5.21!PRRX1;;chr10:31607811..31607837,+!p6@ZEB1!0.79!5.21!ZEB1;;chr7:27205106..27205134,-!p2@HOXA9!0.79!5.21!HOXA9;;chr7:27205136..27205164,-!p1@HOXA9!0.79!5.21!HOXA9;;chr3:21792682..21792720,-!p1@ZNF385D!0.79!5.21!ZNF385D;;chr14:62213827..62213853,+!p6@HIF1A!0.78!7.44!HIF1A;;chr8:72756637..72756664,-!p3@MSC!0.77!5.58!MSC;;chr1:170632137..170632172,+!p10@PRRX1!0.77!4.84!PRRX1;;chr1:170632867..170632878,+!p21@PRRX1!0.77!4.84!PRRX1;;chr16:54320617..54320643,-!p3@IRX3!0.76!6.32!IRX3;;chr1:23696308..23696339,-!p2@ZNF436!0.75!10.42!ZNF436;;chr14:62203749..62203798,+!p5@HIF1A!0.75!7.44!HIF1A;;chr17:59477233..59477263,+!p1@TBX2!0.74!15.25!TBX2;;chr5:139487608..139487663,+!p3@PURA!0.74!10.42!PURA;;chr7:44143997..44144008,+!p3@AEBP1!0.74!5.95!AEBP1;;chr14:62213758..62213774,+!p8@HIF1A!0.74!5.95!HIF1A;;chr19:13134457..13134462,+!p5@NFIX!0.73!8.18!NFIX;;chr8:72756267..72756296,-!p4@MSC!0.73!6.70!MSC;;chr7:14028488..14028516,-!p2@ETV1!0.73!4.84!ETV1;;chr8:116681409..116681431,-!p2@TRPS1!0.72!12.65!TRPS1;;chr18:19749386..19749404,+!p2@GATA6!0.72!6.32!GATA6;;chr11:46299186..46299195,+!p3@CREB3L1!0.72!4.84!CREB3L1;;chr14:62162258..62162269,+!p2@HIF1A!0.71!44.64!HIF1A;;chr18:19749541..19749557,+!p1@GATA6!0.71!14.14!GATA6;;chr11:46299443..46299459,+!p4@CREB3L1!0.71!4.09!CREB3L1;;chr7:27196267..27196311,-!p1@HOXA7!0.71!4.09!HOXA7;;chr2:176969097..176969109,+!p3@HOXD11!0.71!4.09!HOXD11;;chr2:176987441..176987454,+!p1@HOXD9!0.71!4.09!HOXD9;;chr4:26322673..26322684,+!p11@RBPJ!0.71!4.09!RBPJ;;chrY:2803415..2803468,+!p1@ZFY!0.71!4.09!ZFY;;chr5:133450365..133450444,+!p1@TCF7!0.70!20.46!TCF7;;chr2:46602901..46602926,+!p7@EPAS1!0.70!5.58!EPAS1;;chr11:65687362..65687436,+!p3@DRAP1!0.69!20.09!DRAP1;;chr8:72756213..72756243,-!p5@MSC!0.69!5.21!MSC;;chr7:14029283..14029311,-!p1@ETV1!0.68!23.06!ETV1;;chr19:44037546..44037594,+!p1@ZNF575!0.68!8.56!ZNF575;;chr4:26322373..26322393,+!p4@RBPJ!0.68!5.95!RBPJ;;chr6:144329384..144329405,-!p1@PLAGL1!0.67!49.85!PLAGL1;;chr18:22932080..22932170,-!p1@ZNF521!0.67!17.86!ZNF521;;chr19:46272106..46272115,-!p3@SIX5!0.67!11.16!SIX5;;chr12:53625966..53626012,-!p2@RARG!0.67!10.79!RARG;;chr14:89628064..89628109,-!p4@FOXN3!0.67!8.18!FOXN3;;chr15:57511589..57511608,+!p4@TCF12!0.67!3.72!TCF12;;chr16:31076332..31076388,-!p3@ZNF668!0.67!3.72!ZNF668;;chr12:54379745..54379749,+!p6@HOXC5!0.67!3.72!HOXC5;;chr12:54394309..54394336,+!p2@HOXC9!0.67!3.72!HOXC9;;chr14:37131058..37131139,+!p1@PAX9!0.67!3.72!PAX9;;chr7:15725581..15725587,-!p13@MEOX2!0.67!3.72!MEOX2;;chr1:119530493..119530572,-!p1@TBX15!0.67!3.72!TBX15;;chr20:51589133..51589159,+!p2@TSHZ2!0.67!3.72!TSHZ2;;chr2:177001290..177001315,+!p1@HOXD3!0.67!3.72!HOXD3;;chr14:62162285..62162296,+!p3@HIF1A!0.66!21.20!HIF1A;;chr11:65667884..65667895,-!p2@FOSL1!0.66!15.62!FOSL1;;chr17:1959369..1959388,+!p2@HIC1!0.66!10.42!HIC1;;chr12:48298765..48298783,-!p2@VDR!0.66!8.18!VDR;;chr7:137564372..137564394,-!p7@CREB3L2!0.66!6.32!CREB3L2;;chr6:144289132..144289134,-!p3@PLAGL1!0.65!8.93!PLAGL1;;chr8:72756667..72756736,-!p2@MSC!0.64!5.58!MSC;;chr3:157824001..157824078,-!p2@SHOX2!0.64!3.35!SHOX2;;chr3:21792790..21792824,-!p4@ZNF385D!0.64!3.35!ZNF385D;;chr4:174450089..174450153,-!p2@HAND2!0.64!3.35!HAND2;;chr9:16727978..16728010,-!p6@BNC2!0.64!3.35!BNC2;;chr10:131635619..131635623,-!p6@EBF3!0.64!3.35!EBF3;;chr11:34642612..34642646,+!p1@EHF!0.64!3.35!EHF;;chr1:170632115..170632136,+!p9@PRRX1!0.64!3.35!PRRX1;;chr1:170632647..170632659,+!p17@PRRX1!0.64!3.35!PRRX1;;chr1:170633100..170633112,+!p19@PRRX1!0.64!3.35!PRRX1;;chr10:31608127..31608156,+!p1@ZEB1!0.63!72.17!ZEB1;;chr12:27485762..27485776,+!p3@ARNTL2!0.63!10.04!ARNTL2;;chr17:15689487..15689505,+!p@chr17:15689487..15689505,+!0.63!5.95!MEIS3P1;;chr10:77161650..77161661,-!p4@ZNF503!0.63!4.84!ZNF503;;chr19:45260775..45260838,+!p5@BCL3!0.63!4.46!BCL3;;chr9:14307229..14307286,-!p10@NFIB!0.63!3.72!NFIB;;chr2:191878874..191878938,-!p1@STAT1!0.62!204.97!STAT1;;chr18:3451646..3451691,+!p3@TGIF1!0.62!9.67!TGIF1;;chr19:31840313..31840380,-!p1@TSHZ3!0.62!9.30!TSHZ3;;chr16:54320646..54320672,-!p2@IRX3!0.62!5.21!IRX3;;chr2:28615716..28615733,+!p1@FOSL2!0.61!174.84!FOSL2;;chr15:42743341..42743377,-!p3@ZFP106!0.61!5.58!ZFP106;;chr10:63809013..63809041,+!p3@ARID5B!0.60!19.72!ARID5B;;chr8:77593474..77593612,+!p1@ZFHX4!0.60!14.88!ZFHX4;;chr12:10875658..10875708,-!p2@CSDA!0.60!7.81!CSDA;;chr19:45261992..45262010,+!p9@BCL3!0.60!4.46!BCL3;;chr1:119530636..119530653,-!p2@TBX15!0.60!2.98!TBX15;;chr1:170632907..170632916,+!p22@PRRX1!0.60!2.98!PRRX1;;chr1:170633021..170633028,+!p27@PRRX1!0.60!2.98!PRRX1;;chr20:51589402..51589423,+!p6@TSHZ2!0.60!2.98!TSHZ2;;chr5:134369848..134369853,-!p6@PITX1!0.60!2.98!PITX1;;chr3:42695180..42695201,+!p2@ZBTB47!0.60!2.98!ZBTB47;;chr4:26324474..26324501,+!p16@RBPJ!0.60!2.98!RBPJ;;chr10:131762410..131762436,-!p2@EBF3!0.60!2.98!EBF3;;chr12:66357214..66357233,+!p13@HMGA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+|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000057;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000388;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000499
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@@ Line 38: / Line 42: @@
 |fonse_treatment_closure=
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 |name=tenocyte, donor1
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@@ Line 46: / Line 61: @@
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 |sample_cell_line=
@@ Line 83: / Line 101: @@
 |top_motifs=UFEwm:2.95529478579;ALX4:2.75550724581;NKX2-2,8:2.53214992808;EVI1:2.45298982908;TAL1_TCF{3,4,12}:2.39713680922;HMGA1,2:2.28822733837;PAX1,9:2.17303600129;ESR1:2.1303696505;EN1,2:2.07138233052;HES1:1.84206049341;MYBL2:1.81027102434;ZNF238:1.79375227106;NR6A1:1.73292876389;GLI1..3:1.63657061507;XBP1:1.62268909658;RXRA_VDR{dimer}:1.52852089282;GZF1:1.49272566581;RXR{A,B,G}:1.47118943063;FOXL1:1.44050559278;HOX{A4,D4}:1.28575751689;NKX3-1:1.27980345962;GCM1,2:1.25871389061;TFCP2:1.24751163861;KLF4:1.21227773623;ATF6:1.19990886225;EBF1:1.18757550029;CDC5L:1.18192799756;NANOG{mouse}:1.16827180831;DBP:1.16827178617;ZNF423:1.15728423013;GFI1B:1.04877539054;NR3C1:0.971073429831;SPZ1:0.963954172314;HOX{A5,B5}:0.939253584615;HAND1,2:0.938046044608;GATA4:0.931935934757;TP53:0.930612074574;NFATC1..3:0.892742512238;TFAP4:0.885654271457;NKX3-2:0.836185815423;GTF2I:0.823488364284;AIRE:0.819710522277;ARID5B:0.807897305548;SMAD1..7,9:0.797705599743;TEAD1:0.786918779101;ZIC1..3:0.786716196149;PAX4:0.782690047611;MTF1:0.777880447019;ZNF384:0.771821422021;NR1H4:0.742185004754;GTF2A1,2:0.73759137932;FOXO1,3,4:0.73527335287;HMX1:0.734316409137;TFAP2{A,C}:0.700805904995;NFE2L1:0.675114187683;TEF:0.655863118375;HSF1,2:0.60875704639;YY1:0.59701860011;POU3F1..4:0.588413151391;MAFB:0.588082942966;PAX5:0.538538078631;RREB1:0.512249137747;MZF1:0.502201580459;PATZ1:0.49245330635;ZBTB6:0.480056027864;STAT2,4,6:0.477006888888;MTE{core}:0.4757786656;TBP:0.458397470079;MYB:0.456149906658;IRF1,2:0.44849940339;SRF:0.441846602074;TLX1..3_NFIC{dimer}:0.439386735596;PRDM1:0.400389099165;XCPE1{core}:0.378157218047;LHX3,4:0.368144932692;IKZF1:0.343697935299;CDX1,2,4:0.321723452355;NFE2L2:0.312116901124;HIC1:0.282617332623;PAX8:0.255143124445;SOX17:0.21445416935;LMO2:0.19251458348;MAZ:0.175793426518;HLF:0.173200837;ZNF148:0.168665873468;TFAP2B:0.165550914663;ZBTB16:0.157434139342;PPARG:0.113404666526;REST:0.108718186038;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.105465854018;POU6F1:0.0981819012594;FOXD3:0.0664781520215;EP300:0.00820250155585;AR:-0.0159922627452;VSX1,2:-0.0220470078285;MYFfamily:-0.0254629613012;HOX{A6,A7,B6,B7}:-0.0321999431482;HNF1A:-0.0490771001502;GFI1:-0.0618377171411;DMAP1_NCOR{1,2}_SMARC:-0.0677704528432;NHLH1,2:-0.0795438923995;POU5F1:-0.0993539813279;IRF7:-0.106674136773;BACH2:-0.111542485088;HBP1_HMGB_SSRP1_UBTF:-0.13364779149;RUNX1..3:-0.138985530804;TFDP1:-0.15108976255;TOPORS:-0.172826336341;ZNF143:-0.227159027079;BPTF:-0.242173017641;E2F1..5:-0.25103271045;EGR1..3:-0.25157256502;HOXA9_MEIS1:-0.271259109552;FOS_FOS{B,L1}_JUN{B,D}:-0.297768123586;FOXM1:-0.298266630469;NKX2-3_NKX2-5:-0.30864996858;NFIX:-0.324426606593;MED-1{core}:-0.325865352121;STAT1,3:-0.329261710998;NFKB1_REL_RELA:-0.337988879958;HNF4A_NR2F1,2:-0.34167631142;TBX4,5:-0.34519282915;PAX3,7:-0.353996658699;NR5A1,2:-0.366403476823;ONECUT1,2:-0.376891696794;ZFP161:-0.377688433601;MEF2{A,B,C,D}:-0.394891487933;bHLH_family:-0.396722257823;NRF1:-0.401269216148;FOXP3:-0.420033748176;PITX1..3:-0.435926965491;LEF1_TCF7_TCF7L1,2:-0.460929062227;SP1:-0.465577515066;NKX2-1,4:-0.499563363465;SNAI1..3:-0.525428940661;RFX1:-0.536216547142;FOSL2:-0.608267026416;FOX{D1,D2}:-0.631106786897;CEBPA,B_DDIT3:-0.657552241118;STAT5{A,B}:-0.671093870174;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.672828338656;FOXA2:-0.681340669687;BREu{core}:-0.685890534083;HIF1A:-0.690636137352;NKX6-1,2:-0.702689726499;NFIL3:-0.70335311354;IKZF2:-0.705826806088;NFE2:-0.72597200736;SPI1:-0.7303298163;SPIB:-0.741199901337;JUN:-0.781292402635;FOXN1:-0.784056334841;CREB1:-0.792010517223;ELK1,4_GABP{A,B1}:-0.79406426955;SOX5:-0.796939162409;PBX1:-0.801825557564;TLX2:-0.806912131298;AHR_ARNT_ARNT2:-0.818165522782;SOX{8,9,10}:-0.835988280985;ETS1,2:-0.850940137175;PAX2:-0.861666709867;SOX2:-0.864725894299;FOXP1:-0.920965237883;ESRRA:-0.940709974274;ADNP_IRX_SIX_ZHX:-0.955750539365;RFX2..5_RFXANK_RFXAP:-0.961653147071;SREBF1,2:-0.987396739855;ATF4:-0.993643611555;NFY{A,B,C}:-1.02194443297;POU1F1:-1.0393968869;TGIF1:-1.10874675304;POU2F1..3:-1.12233792029;ZEB1:-1.14833963058;FOX{I1,J2}:-1.17894569113;ELF1,2,4:-1.18820710531;PRRX1,2:-1.20954320863;PAX6:-1.21505688006;ATF5_CREB3:-1.22278191604;OCT4_SOX2{dimer}:-1.23946112031;ALX1:-1.28345790781;GATA6:-1.31349922375;RBPJ:-1.32147132114;CUX2:-1.32605460367;T:-1.40576397651;PDX1:-1.52974574447;FOX{F1,F2,J1}:-1.56696631607;ATF2:-1.5751939868;CRX:-1.576535295;MYOD1:-1.5868544728;NANOG:-1.877266695;RORA:-1.88838939154;FOXQ1:-2.01061907811
 |xref=
+|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11763-123H8;search_select_hide=table117:FF:11763-123H8
 }}

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FF:11763-123H8: Difference between revisions

From FANTOM5_SSTAR

Latest revision as of 18:18, 4 June 2020

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	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0