FF:11791-124B9: Difference between revisions
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{{f5samples | {{f5samples | ||
|ancestors_in_anatomy_facet= | |DRA_sample_Accession=CAGE@SAMD00005479 | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003 | |accession_numbers=CAGE;DRX008187;DRR009059;DRZ000484;DRZ001869;DRZ011834;DRZ013219 | ||
|ancestors_in_anatomy_facet= | |||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003 | |||
|ancestors_in_disease_facet= | |ancestors_in_disease_facet= | ||
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000001 | |||
|comment=Previously: CD4-positiveCD25-CD45RA+ memory conventional T cells expanded, donor1. TODO: full classification | |comment=Previously: CD4-positiveCD25-CD45RA+ memory conventional T cells expanded, donor1. TODO: full classification | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|data_phase=2 | |||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score | |||
|fonse_cell_line= | |fonse_cell_line= | ||
|fonse_cell_line_closure= | |fonse_cell_line_closure= | ||
| Line 35: | Line 41: | ||
|fonse_treatment_closure=EFO:0000369,FF:0000409,FF:0011452,FF:11791-124B9 | |fonse_treatment_closure=EFO:0000369,FF:0000409,FF:0011452,FF:11791-124B9 | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/CD4%252bCD25-CD45RA%252b%2520naive%2520conventional%2520T%2520cells%2520expanded%252c%2520donor1.CNhs13202.11791-124B9.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/CD4%252bCD25-CD45RA%252b%2520naive%2520conventional%2520T%2520cells%2520expanded%252c%2520donor1.CNhs13202.11791-124B9.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/CD4%252bCD25-CD45RA%252b%2520naive%2520conventional%2520T%2520cells%2520expanded%252c%2520donor1.CNhs13202.11791-124B9.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/CD4%252bCD25-CD45RA%252b%2520naive%2520conventional%2520T%2520cells%2520expanded%252c%2520donor1.CNhs13202.11791-124B9.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/CD4%252bCD25-CD45RA%252b%2520naive%2520conventional%2520T%2520cells%2520expanded%252c%2520donor1.CNhs13202.11791-124B9.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:11791-124B9 | |id=FF:11791-124B9 | ||
|is_a=EFO:0002091;;FF:0000002;;FF:0000210 | |is_a=EFO:0002091;;FF:0000002;;FF:0000210 | ||
|is_obsolete= | |||
|library_id=CNhs13202 | |||
|library_id_phase_based=2:CNhs13202 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11791 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11791 | |||
|name=CD4+CD25-CD45RA+ naive conventional T cells expanded, donor1 | |name=CD4+CD25-CD45RA+ naive conventional T cells expanded, donor1 | ||
|namespace= | |namespace= | ||
| Line 42: | Line 60: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs13202,LSID1004,release012,COMPLETED | |profile_hcage=CNhs13202,LSID1004,release012,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=,,, | |profile_srnaseq=,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
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| |||
|rna_box=124 | |rna_box=124 | ||
|rna_catalog_number= | |rna_catalog_number= | ||
| Line 57: | Line 78: | ||
|rna_weight_ug=2.8764 | |rna_weight_ug=2.8764 | ||
|sample_age=25 | |sample_age=25 | ||
|sample_category=primary cells | |||
|sample_cell_catalog= | |sample_cell_catalog= | ||
|sample_cell_line= | |sample_cell_line= | ||
| Line 69: | Line 91: | ||
|sample_ethnicity= | |sample_ethnicity= | ||
|sample_experimental_condition= | |sample_experimental_condition= | ||
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;6.93890189800765e-240!GO:0043227;membrane-bound organelle;2.12798351435349e-208!GO:0043231;intracellular membrane-bound organelle;5.02074150016879e-208!GO:0043226;organelle;4.63295931871127e-197!GO:0043229;intracellular organelle;2.35220751681837e-196!GO:0005737;cytoplasm;1.02800220682059e-144!GO:0044422;organelle part;3.58563424161835e-137!GO:0044446;intracellular organelle part;1.5961373753984e-135!GO:0005634;nucleus;2.5731974152167e-111!GO:0032991;macromolecular complex;4.21779746838975e-106!GO:0044237;cellular metabolic process;1.18567275109374e-104!GO:0043170;macromolecule metabolic process;3.90186564173013e-101!GO:0044238;primary metabolic process;1.57122107017942e-100!GO:0044444;cytoplasmic part;5.47280767753914e-100!GO:0030529;ribonucleoprotein complex;3.16853050736968e-87!GO:0044428;nuclear part;9.13421946684774e-84!GO:0003723;RNA binding;2.04730288222199e-79!GO:0043233;organelle lumen;2.40684868517791e-70!GO:0031974;membrane-enclosed lumen;2.40684868517791e-70!GO:0043283;biopolymer metabolic process;8.62732315852878e-69!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;1.44824912137626e-59!GO:0005739;mitochondrion;1.38387309925487e-56!GO:0010467;gene expression;5.28316610567801e-56!GO:0005515;protein binding;5.62162466003449e-56!GO:0006396;RNA processing;9.63511295792666e-55!GO:0043234;protein complex;1.79430508711207e-54!GO:0006412;translation;3.31822835327957e-52!GO:0019538;protein metabolic process;8.76182732998923e-50!GO:0031981;nuclear lumen;3.17004404115978e-49!GO:0005840;ribosome;8.16612150171507e-49!GO:0033036;macromolecule localization;9.75543054035111e-48!GO:0044267;cellular protein metabolic process;6.16701036632314e-47!GO:0016071;mRNA metabolic process;1.1512196176498e-46!GO:0044260;cellular macromolecule metabolic process;3.78809028965547e-46!GO:0015031;protein transport;1.95879847022235e-45!GO:0006259;DNA metabolic process;9.3246066156063e-44!GO:0008104;protein localization;1.07689333334267e-43!GO:0045184;establishment of protein localization;2.97598446802238e-43!GO:0003735;structural constituent of ribosome;9.82501887116422e-43!GO:0003676;nucleic acid binding;2.34497150659192e-42!GO:0008380;RNA splicing;1.35849056492502e-40!GO:0006397;mRNA processing;1.73346371559149e-40!GO:0031090;organelle membrane;1.79857111604131e-40!GO:0044429;mitochondrial part;2.42974953445385e-40!GO:0009059;macromolecule biosynthetic process;1.24078092763207e-39!GO:0031967;organelle envelope;4.66858044990519e-39!GO:0031975;envelope;1.0255690293759e-38!GO:0033279;ribosomal subunit;3.70460163443268e-37!GO:0005829;cytosol;3.79106061756745e-36!GO:0016043;cellular component organization and biogenesis;1.7277074045133e-35!GO:0046907;intracellular transport;3.81950096966239e-34!GO:0009058;biosynthetic process;5.30499324885696e-33!GO:0044249;cellular biosynthetic process;5.76760068374186e-33!GO:0006886;intracellular protein transport;2.10094633473491e-32!GO:0005654;nucleoplasm;2.75163102145564e-32!GO:0022613;ribonucleoprotein complex biogenesis and assembly;2.77430602270508e-32!GO:0065003;macromolecular complex assembly;4.22105831740911e-32!GO:0007049;cell cycle;2.04240507860205e-30!GO:0000166;nucleotide binding;3.97870685997604e-30!GO:0005681;spliceosome;4.0176878000247e-30!GO:0006996;organelle organization and biogenesis;1.60777892648157e-29!GO:0043228;non-membrane-bound organelle;5.68912565897313e-29!GO:0043232;intracellular non-membrane-bound organelle;5.68912565897313e-29!GO:0005830;cytosolic ribosome (sensu Eukaryota);8.32870608335317e-29!GO:0016070;RNA metabolic process;1.03215492029879e-28!GO:0022607;cellular component assembly;8.91767430901405e-28!GO:0006974;response to DNA damage stimulus;1.55016383512708e-26!GO:0044445;cytosolic part;1.93569455907642e-26!GO:0005740;mitochondrial envelope;1.45103863507232e-25!GO:0005694;chromosome;3.17077481535563e-25!GO:0022402;cell cycle process;8.78172260094215e-25!GO:0019866;organelle inner membrane;1.53508535888203e-24!GO:0051641;cellular localization;1.95427713824339e-24!GO:0031966;mitochondrial membrane;3.02155833767443e-24!GO:0051649;establishment of cellular localization;4.33773547833004e-24!GO:0044451;nucleoplasm part;4.3617921303231e-24!GO:0006512;ubiquitin cycle;1.30440517529331e-23!GO:0044427;chromosomal part;5.50325536760403e-23!GO:0032553;ribonucleotide binding;1.44521198137083e-22!GO:0032555;purine ribonucleotide binding;1.44521198137083e-22!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;3.07315286498164e-22!GO:0006915;apoptosis;3.07315286498164e-22!GO:0012501;programmed cell death;3.19233372919057e-22!GO:0006281;DNA repair;3.20483791905798e-22!GO:0005743;mitochondrial inner membrane;3.37915226099075e-22!GO:0016817;hydrolase activity, acting on acid anhydrides;3.44353357046979e-22!GO:0016462;pyrophosphatase activity;3.57844482456352e-22!GO:0017076;purine nucleotide binding;7.93033336819634e-22!GO:0017111;nucleoside-triphosphatase activity;1.28255272739442e-21!GO:0008219;cell death;2.26944993729392e-21!GO:0016265;death;2.26944993729392e-21!GO:0051276;chromosome organization and biogenesis;5.73612375198305e-21!GO:0005524;ATP binding;1.0517247291503e-20!GO:0006119;oxidative phosphorylation;1.41110029364697e-20!GO:0016874;ligase activity;1.57888651504861e-20!GO:0022618;protein-RNA complex assembly;1.60629982924269e-20!GO:0032559;adenyl ribonucleotide binding;4.08647044191062e-20!GO:0000278;mitotic cell cycle;9.95330023558665e-20!GO:0015935;small ribosomal subunit;3.28156911162623e-19!GO:0030554;adenyl nucleotide binding;3.80687734536302e-19!GO:0044265;cellular macromolecule catabolic process;6.29349056101913e-19!GO:0015934;large ribosomal subunit;7.57914898596842e-19!GO:0043412;biopolymer modification;1.15961359992617e-18!GO:0031980;mitochondrial lumen;4.1244581411346e-18!GO:0005759;mitochondrial matrix;4.1244581411346e-18!GO:0044455;mitochondrial membrane part;5.15465944438581e-18!GO:0005730;nucleolus;6.56481697276706e-18!GO:0016887;ATPase activity;1.09178766340641e-17!GO:0042623;ATPase activity, coupled;1.84872859797586e-17!GO:0016604;nuclear body;2.61284690708e-17!GO:0006325;establishment and/or maintenance of chromatin architecture;5.05494779081504e-17!GO:0008135;translation factor activity, nucleic acid binding;7.98757922389931e-17!GO:0051603;proteolysis involved in cellular protein catabolic process;1.12700834698599e-16!GO:0043285;biopolymer catabolic process;1.35617303778464e-16!GO:0019941;modification-dependent protein catabolic process;1.37802806220974e-16!GO:0043632;modification-dependent macromolecule catabolic process;1.37802806220974e-16!GO:0006323;DNA packaging;2.42893143578242e-16!GO:0006605;protein targeting;2.48805207147294e-16!GO:0006511;ubiquitin-dependent protein catabolic process;2.8037547053519e-16!GO:0042981;regulation of apoptosis;2.99586915680429e-16!GO:0006464;protein modification process;3.10656755582329e-16!GO:0044257;cellular protein catabolic process;3.11212482398276e-16!GO:0012505;endomembrane system;3.28090051926317e-16!GO:0051726;regulation of cell cycle;3.83816511084809e-16!GO:0009719;response to endogenous stimulus;4.3553074013751e-16!GO:0006913;nucleocytoplasmic transport;4.7079940648585e-16!GO:0043067;regulation of programmed cell death;5.17563417509658e-16!GO:0000087;M phase of mitotic cell cycle;5.63768142701947e-16!GO:0000074;regulation of progression through cell cycle;5.84565284006276e-16!GO:0022403;cell cycle phase;5.96602607041013e-16!GO:0051169;nuclear transport;9.52401743296441e-16!GO:0007067;mitosis;1.17666135005159e-15!GO:0000502;proteasome complex (sensu Eukaryota);1.52634408496025e-15!GO:0008134;transcription factor binding;1.69738534366032e-15!GO:0009057;macromolecule catabolic process;2.63149951643774e-15!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);3.47898260281217e-15!GO:0006457;protein folding;3.68499315431735e-15!GO:0043687;post-translational protein modification;5.2757746009968e-15!GO:0005746;mitochondrial respiratory chain;9.63630210609735e-15!GO:0000785;chromatin;1.86815383563646e-14!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);1.88543944566488e-14!GO:0005635;nuclear envelope;2.16508003834018e-14!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;3.67347417418917e-14!GO:0050794;regulation of cellular process;3.77684993812054e-14!GO:0000398;nuclear mRNA splicing, via spliceosome;4.10489146762574e-14!GO:0000375;RNA splicing, via transesterification reactions;4.10489146762574e-14!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;4.10489146762574e-14!GO:0006333;chromatin assembly or disassembly;4.75886021147704e-14!GO:0050136;NADH dehydrogenase (quinone) activity;7.5455046712374e-14!GO:0003954;NADH dehydrogenase activity;7.5455046712374e-14!GO:0008137;NADH dehydrogenase (ubiquinone) activity;7.5455046712374e-14!GO:0016607;nuclear speck;1.16893109085552e-13!GO:0004386;helicase activity;1.21616811539753e-13!GO:0000279;M phase;1.80139929517627e-13!GO:0044248;cellular catabolic process;2.0648594637477e-13!GO:0031965;nuclear membrane;2.06978266672555e-13!GO:0051301;cell division;2.12744595502143e-13!GO:0006413;translational initiation;2.26143966341282e-13!GO:0003743;translation initiation factor activity;2.45269104704333e-13!GO:0048770;pigment granule;2.84709176111252e-13!GO:0042470;melanosome;2.84709176111252e-13!GO:0065004;protein-DNA complex assembly;6.81784576581472e-13!GO:0006260;DNA replication;7.00919358794938e-13!GO:0030163;protein catabolic process;1.30772659898007e-12!GO:0042254;ribosome biogenesis and assembly;1.36623365141383e-12!GO:0005761;mitochondrial ribosome;1.7130702085853e-12!GO:0000313;organellar ribosome;1.7130702085853e-12!GO:0044453;nuclear membrane part;3.85672381787051e-12!GO:0042775;organelle ATP synthesis coupled electron transport;4.311908417308e-12!GO:0042773;ATP synthesis coupled electron transport;4.311908417308e-12!GO:0008026;ATP-dependent helicase activity;6.10919549954408e-12!GO:0030964;NADH dehydrogenase complex (quinone);7.13413494820857e-12!GO:0045271;respiratory chain complex I;7.13413494820857e-12!GO:0005747;mitochondrial respiratory chain complex I;7.13413494820857e-12!GO:0006446;regulation of translational initiation;1.37590882429841e-11!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;2.06657861258636e-11!GO:0048193;Golgi vesicle transport;5.27046997377562e-11!GO:0017038;protein import;9.85834362554741e-11!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;9.95037917818687e-11!GO:0006334;nucleosome assembly;1.01081099563693e-10!GO:0008639;small protein conjugating enzyme activity;1.01226371857062e-10!GO:0051186;cofactor metabolic process;1.27769649143994e-10!GO:0019787;small conjugating protein ligase activity;1.29856376391417e-10!GO:0051082;unfolded protein binding;1.46317367928263e-10!GO:0004842;ubiquitin-protein ligase activity;1.92928338993927e-10!GO:0016568;chromatin modification;2.00792894762198e-10!GO:0043566;structure-specific DNA binding;2.20975484886104e-10!GO:0005643;nuclear pore;2.50472639465224e-10!GO:0050657;nucleic acid transport;2.82550180621674e-10!GO:0051236;establishment of RNA localization;2.82550180621674e-10!GO:0050658;RNA transport;2.82550180621674e-10!GO:0006403;RNA localization;2.93770470960323e-10!GO:0031497;chromatin assembly;3.17856058048711e-10!GO:0006793;phosphorus metabolic process;3.57223351740053e-10!GO:0006796;phosphate metabolic process;3.57223351740053e-10!GO:0009259;ribonucleotide metabolic process;4.18642024486288e-10!GO:0016787;hydrolase activity;7.30728511365565e-10!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;9.07306397238237e-10!GO:0016879;ligase activity, forming carbon-nitrogen bonds;9.24546981989388e-10!GO:0007249;I-kappaB kinase/NF-kappaB cascade;9.4137177575522e-10!GO:0044432;endoplasmic reticulum part;1.28395796848688e-09!GO:0009260;ribonucleotide biosynthetic process;1.42218541807781e-09!GO:0006164;purine nucleotide biosynthetic process;1.42986120825042e-09!GO:0003697;single-stranded DNA binding;1.47584574625377e-09!GO:0006163;purine nucleotide metabolic process;1.72468318874182e-09!GO:0019829;cation-transporting ATPase activity;1.9828948003919e-09!GO:0019222;regulation of metabolic process;3.2383390197678e-09!GO:0008565;protein transporter activity;3.61607453169827e-09!GO:0003712;transcription cofactor activity;3.69035498883441e-09!GO:0005794;Golgi apparatus;4.37142578705138e-09!GO:0009152;purine ribonucleotide biosynthetic process;4.59878201120556e-09!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;5.13311337885613e-09!GO:0006399;tRNA metabolic process;5.31494139053853e-09!GO:0005783;endoplasmic reticulum;5.60139219906935e-09!GO:0009150;purine ribonucleotide metabolic process;5.75678985217493e-09!GO:0050789;regulation of biological process;6.03313950439992e-09!GO:0065002;intracellular protein transport across a membrane;6.16092905908508e-09!GO:0016310;phosphorylation;6.5872807548016e-09!GO:0016881;acid-amino acid ligase activity;7.21076314110031e-09!GO:0046930;pore complex;9.47303837766818e-09!GO:0006732;coenzyme metabolic process;1.11681984237693e-08!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;1.31286954571486e-08!GO:0006916;anti-apoptosis;1.40465354783799e-08!GO:0051028;mRNA transport;1.46698248899938e-08!GO:0043069;negative regulation of programmed cell death;1.50608242186266e-08!GO:0042175;nuclear envelope-endoplasmic reticulum network;1.53009225883838e-08!GO:0045786;negative regulation of progression through cell cycle;1.88667621026173e-08!GO:0016072;rRNA metabolic process;2.13738995328033e-08!GO:0043066;negative regulation of apoptosis;2.13825238736947e-08!GO:0005789;endoplasmic reticulum membrane;2.53100476350975e-08!GO:0006364;rRNA processing;2.62184949097386e-08!GO:0051170;nuclear import;3.29198935926565e-08!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;3.35282619643295e-08!GO:0030532;small nuclear ribonucleoprotein complex;3.50018749937757e-08!GO:0005839;proteasome core complex (sensu Eukaryota);4.02235482068355e-08!GO:0006917;induction of apoptosis;4.12803557011837e-08!GO:0016192;vesicle-mediated transport;5.08136950695936e-08!GO:0006606;protein import into nucleus;5.60576364629254e-08!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;5.74546512545855e-08!GO:0007243;protein kinase cascade;6.03617676793264e-08!GO:0015986;ATP synthesis coupled proton transport;6.24339578348795e-08!GO:0015985;energy coupled proton transport, down electrochemical gradient;6.24339578348795e-08!GO:0012502;induction of programmed cell death;6.87444277177447e-08!GO:0048523;negative regulation of cellular process;6.99600087800409e-08!GO:0015078;hydrogen ion transmembrane transporter activity;9.28047778504991e-08!GO:0016740;transferase activity;1.12558669419148e-07!GO:0032446;protein modification by small protein conjugation;1.17789453344415e-07!GO:0051246;regulation of protein metabolic process;1.20100763974763e-07!GO:0016779;nucleotidyltransferase activity;1.31740222400398e-07!GO:0000786;nucleosome;1.47614017847403e-07!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;1.52726520150579e-07!GO:0004298;threonine endopeptidase activity;1.71471574881004e-07!GO:0031323;regulation of cellular metabolic process;1.86054628576432e-07!GO:0043065;positive regulation of apoptosis;1.89093002329695e-07!GO:0009060;aerobic respiration;2.25719025159523e-07!GO:0019899;enzyme binding;2.54647562372923e-07!GO:0005768;endosome;2.5593575505257e-07!GO:0043068;positive regulation of programmed cell death;3.08153922891942e-07!GO:0009056;catabolic process;3.34844651218935e-07!GO:0065009;regulation of a molecular function;3.46086627428642e-07!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;3.56804980195664e-07!GO:0004812;aminoacyl-tRNA ligase activity;3.56804980195664e-07!GO:0016875;ligase activity, forming carbon-oxygen bonds;3.56804980195664e-07!GO:0006888;ER to Golgi vesicle-mediated transport;4.08334726465581e-07!GO:0006754;ATP biosynthetic process;4.16095590683087e-07!GO:0006753;nucleoside phosphate metabolic process;4.16095590683087e-07!GO:0016567;protein ubiquitination;4.26516856243906e-07!GO:0009142;nucleoside triphosphate biosynthetic process;4.48502603654564e-07!GO:0009201;ribonucleoside triphosphate biosynthetic process;4.48502603654564e-07!GO:0016469;proton-transporting two-sector ATPase complex;4.92125161568696e-07!GO:0005813;centrosome;4.92812372628157e-07!GO:0016772;transferase activity, transferring phosphorus-containing groups;5.05195760211607e-07!GO:0006310;DNA recombination;5.34291629983113e-07!GO:0009055;electron carrier activity;5.45874930470083e-07!GO:0009199;ribonucleoside triphosphate metabolic process;5.61507073187058e-07!GO:0009141;nucleoside triphosphate metabolic process;5.81969902248279e-07!GO:0000775;chromosome, pericentric region;5.94666903472939e-07!GO:0043038;amino acid activation;5.94666903472939e-07!GO:0006418;tRNA aminoacylation for protein translation;5.94666903472939e-07!GO:0043039;tRNA aminoacylation;5.94666903472939e-07!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;6.98155562406447e-07!GO:0009145;purine nucleoside triphosphate biosynthetic process;6.98155562406447e-07!GO:0015630;microtubule cytoskeleton;7.33526734141998e-07!GO:0006261;DNA-dependent DNA replication;8.13060788275872e-07!GO:0046034;ATP metabolic process;8.23116574035676e-07!GO:0005815;microtubule organizing center;8.23116574035676e-07!GO:0005819;spindle;8.52476586865644e-07!GO:0009205;purine ribonucleoside triphosphate metabolic process;8.59977770349117e-07!GO:0009144;purine nucleoside triphosphate metabolic process;8.59977770349117e-07!GO:0048519;negative regulation of biological process;1.26503820210431e-06!GO:0000245;spliceosome assembly;1.37239786884615e-06!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;1.44970253696371e-06!GO:0015399;primary active transmembrane transporter activity;1.44970253696371e-06!GO:0030120;vesicle coat;1.49268745678587e-06!GO:0030662;coated vesicle membrane;1.49268745678587e-06!GO:0006350;transcription;1.52677356226468e-06!GO:0003713;transcription coactivator activity;1.52677356226468e-06!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;1.82256733201521e-06!GO:0051188;cofactor biosynthetic process;1.86790928295808e-06!GO:0045333;cellular respiration;2.02952671761073e-06!GO:0000075;cell cycle checkpoint;2.12697517494663e-06!GO:0048475;coated membrane;2.46137475341087e-06!GO:0030117;membrane coat;2.46137475341087e-06!GO:0051168;nuclear export;2.51768519981227e-06!GO:0006366;transcription from RNA polymerase II promoter;2.53983680289523e-06!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;2.56798306358347e-06!GO:0045259;proton-transporting ATP synthase complex;2.69316687734043e-06!GO:0031202;RNA splicing factor activity, transesterification mechanism;3.48895443067437e-06!GO:0006461;protein complex assembly;4.25057482728561e-06!GO:0000151;ubiquitin ligase complex;4.3056437866885e-06!GO:0016563;transcription activator activity;5.14919880255907e-06!GO:0003724;RNA helicase activity;5.29012137228921e-06!GO:0006613;cotranslational protein targeting to membrane;5.48910028830821e-06!GO:0008632;apoptotic program;6.62788004307427e-06!GO:0006099;tricarboxylic acid cycle;6.99808050848113e-06!GO:0046356;acetyl-CoA catabolic process;6.99808050848113e-06!GO:0006752;group transfer coenzyme metabolic process;7.13669775386118e-06!GO:0015077;monovalent inorganic cation transmembrane transporter activity;8.49240555328552e-06!GO:0016363;nuclear matrix;8.74575403016202e-06!GO:0048522;positive regulation of cellular process;8.93377629361237e-06!GO:0005793;ER-Golgi intermediate compartment;9.53550422125529e-06!GO:0003690;double-stranded DNA binding;1.02368470831483e-05!GO:0006401;RNA catabolic process;1.03393848328321e-05!GO:0010468;regulation of gene expression;1.29482547757301e-05!GO:0008270;zinc ion binding;1.43032727395587e-05!GO:0007242;intracellular signaling cascade;1.47096923892163e-05!GO:0006084;acetyl-CoA metabolic process;1.49257152010974e-05!GO:0005657;replication fork;1.73897436177583e-05!GO:0003677;DNA binding;2.16378397479271e-05!GO:0019219;regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;2.18599192288803e-05!GO:0031324;negative regulation of cellular metabolic process;2.33505547660681e-05!GO:0065007;biological regulation;2.57741705192798e-05!GO:0004674;protein serine/threonine kinase activity;2.72437992849242e-05!GO:0051329;interphase of mitotic cell cycle;2.78396303203794e-05!GO:0009117;nucleotide metabolic process;2.95878528627023e-05!GO:0051325;interphase;3.21886832017597e-05!GO:0043492;ATPase activity, coupled to movement of substances;3.27359435373821e-05!GO:0007005;mitochondrion organization and biogenesis;3.42353506956033e-05!GO:0009108;coenzyme biosynthetic process;3.47188354823669e-05!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;3.52811644274568e-05!GO:0007088;regulation of mitosis;3.62282425787431e-05!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;4.12188581118446e-05!GO:0005852;eukaryotic translation initiation factor 3 complex;4.9202840218954e-05!GO:0009109;coenzyme catabolic process;5.35820014956577e-05!GO:0006612;protein targeting to membrane;5.9451810528686e-05!GO:0006402;mRNA catabolic process;6.57414446819368e-05!GO:0008094;DNA-dependent ATPase activity;8.33763815118567e-05!GO:0008186;RNA-dependent ATPase activity;8.57851577528477e-05!GO:0005762;mitochondrial large ribosomal subunit;8.91424850866395e-05!GO:0000315;organellar large ribosomal subunit;8.91424850866395e-05!GO:0003899;DNA-directed RNA polymerase activity;9.65009387794188e-05!GO:0005773;vacuole;9.68664634264034e-05!GO:0043623;cellular protein complex assembly;0.000108630029129087!GO:0051427;hormone receptor binding;0.000113432710013059!GO:0006302;double-strand break repair;0.000113432710013059!GO:0008234;cysteine-type peptidase activity;0.000124897002909685!GO:0030384;phosphoinositide metabolic process;0.000126491855963652!GO:0051187;cofactor catabolic process;0.000134294000603472!GO:0044440;endosomal part;0.00013890423870958!GO:0010008;endosome membrane;0.00013890423870958!GO:0009892;negative regulation of metabolic process;0.000148735934533787!GO:0016564;transcription repressor activity;0.000174374555147792!GO:0005770;late endosome;0.000178786328006787!GO:0003684;damaged DNA binding;0.000181078923300502!GO:0050790;regulation of catalytic activity;0.000189683271420457!GO:0008654;phospholipid biosynthetic process;0.000189783170480555!GO:0005525;GTP binding;0.000194081220995765!GO:0032774;RNA biosynthetic process;0.000196445299556491!GO:0009615;response to virus;0.000209402904734921!GO:0005798;Golgi-associated vesicle;0.000209754361464811!GO:0003678;DNA helicase activity;0.00021202029467441!GO:0005885;Arp2/3 protein complex;0.000220081188404665!GO:0000776;kinetochore;0.00022120533282712!GO:0009967;positive regulation of signal transduction;0.00022204026043875!GO:0007093;mitotic cell cycle checkpoint;0.000222660290758456!GO:0043021;ribonucleoprotein binding;0.000225110111897596!GO:0035257;nuclear hormone receptor binding;0.000229154577865163!GO:0044431;Golgi apparatus part;0.000235951486996697!GO:0006818;hydrogen transport;0.00024295650300349!GO:0006351;transcription, DNA-dependent;0.000245503660409378!GO:0015992;proton transport;0.000248353236946857!GO:0000323;lytic vacuole;0.000254442384691379!GO:0005764;lysosome;0.000254442384691379!GO:0004004;ATP-dependent RNA helicase activity;0.000262642800053283!GO:0005667;transcription factor complex;0.00026687284394849!GO:0004518;nuclease activity;0.000304703933950979!GO:0007051;spindle organization and biogenesis;0.000307318360875358!GO:0006417;regulation of translation;0.00031872073134847!GO:0006891;intra-Golgi vesicle-mediated transport;0.000343750664359346!GO:0003729;mRNA binding;0.000351820482427884!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.000359332829577404!GO:0003682;chromatin binding;0.000373702538800523!GO:0045449;regulation of transcription;0.000380216693010864!GO:0007050;cell cycle arrest;0.000402045458411711!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.000403777992152372!GO:0006289;nucleotide-excision repair;0.000415318792889209!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.00044584327397986!GO:0006650;glycerophospholipid metabolic process;0.000448944420339239!GO:0005769;early endosome;0.000486040988570249!GO:0006383;transcription from RNA polymerase III promoter;0.000488408570411079!GO:0046489;phosphoinositide biosynthetic process;0.000556375631633977!GO:0003924;GTPase activity;0.000564516695781136!GO:0000079;regulation of cyclin-dependent protein kinase activity;0.000582261529190415!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.000640009473050012!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.000699612069411558!GO:0051052;regulation of DNA metabolic process;0.000712770410408471!GO:0007059;chromosome segregation;0.000714966097562385!GO:0048518;positive regulation of biological process;0.000749656983751809!GO:0051252;regulation of RNA metabolic process;0.000766131623196884!GO:0019843;rRNA binding;0.000891174402073161!GO:0000314;organellar small ribosomal subunit;0.000905745030956585!GO:0005763;mitochondrial small ribosomal subunit;0.000905745030956585!GO:0031326;regulation of cellular biosynthetic process;0.00105540927907768!GO:0046914;transition metal ion binding;0.00109458632604673!GO:0004527;exonuclease activity;0.00119289627501585!GO:0032561;guanyl ribonucleotide binding;0.00119308008305659!GO:0019001;guanyl nucleotide binding;0.00119308008305659!GO:0016741;transferase activity, transferring one-carbon groups;0.00127497550372207!GO:0008168;methyltransferase activity;0.00127532037124658!GO:0046474;glycerophospholipid biosynthetic process;0.00133840144148306!GO:0006611;protein export from nucleus;0.00155523486034291!GO:0048500;signal recognition particle;0.00157417992421329!GO:0047485;protein N-terminus binding;0.00158863896318482!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00165748934226648!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00165748934226648!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00165748934226648!GO:0016853;isomerase activity;0.00170754507767964!GO:0000209;protein polyubiquitination;0.00176876967413201!GO:0060090;molecular adaptor activity;0.00178566128214793!GO:0007006;mitochondrial membrane organization and biogenesis;0.00182454209996162!GO:0000082;G1/S transition of mitotic cell cycle;0.0018638775306253!GO:0005637;nuclear inner membrane;0.00191927970484424!GO:0016481;negative regulation of transcription;0.00192399790049275!GO:0043681;protein import into mitochondrion;0.00196989834636204!GO:0006352;transcription initiation;0.00202087011506113!GO:0015631;tubulin binding;0.00206241552096433!GO:0009165;nucleotide biosynthetic process;0.00210942917920796!GO:0030658;transport vesicle membrane;0.00219234619947243!GO:0031072;heat shock protein binding;0.00219776344919592!GO:0003711;transcription elongation regulator activity;0.00228760233134502!GO:0000139;Golgi membrane;0.00239654288996861!GO:0006414;translational elongation;0.00241712299386241!GO:0008033;tRNA processing;0.00243217857462006!GO:0006405;RNA export from nucleus;0.00256429584332468!GO:0008312;7S RNA binding;0.00264626792310833!GO:0051092;activation of NF-kappaB transcription factor;0.00286365711749779!GO:0006607;NLS-bearing substrate import into nucleus;0.00289710877464631!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.00291255459337352!GO:0045047;protein targeting to ER;0.00291255459337352!GO:0042802;identical protein binding;0.00301631565463759!GO:0008624;induction of apoptosis by extracellular signals;0.0030955974944023!GO:0046822;regulation of nucleocytoplasmic transport;0.00319725401599919!GO:0044452;nucleolar part;0.00348278839417821!GO:0005048;signal sequence binding;0.00357512912602393!GO:0048468;cell development;0.00363289831211446!GO:0005684;U2-dependent spliceosome;0.00366709680985742!GO:0032508;DNA duplex unwinding;0.00370034113964794!GO:0032392;DNA geometric change;0.00370034113964794!GO:0019867;outer membrane;0.00382898673603875!GO:0051087;chaperone binding;0.00384813233471908!GO:0042110;T cell activation;0.00384813233471908!GO:0008022;protein C-terminus binding;0.00384985790571357!GO:0022415;viral reproductive process;0.00397306485249853!GO:0016251;general RNA polymerase II transcription factor activity;0.00401649291216311!GO:0030118;clathrin coat;0.00406293442659103!GO:0051920;peroxiredoxin activity;0.00411243077027749!GO:0030660;Golgi-associated vesicle membrane;0.00421683360445182!GO:0022890;inorganic cation transmembrane transporter activity;0.0042397167411928!GO:0006355;regulation of transcription, DNA-dependent;0.00427875121666692!GO:0003714;transcription corepressor activity;0.00437052665193366!GO:0030521;androgen receptor signaling pathway;0.00439221559485953!GO:0007052;mitotic spindle organization and biogenesis;0.00439489609101121!GO:0032259;methylation;0.00439489609101121!GO:0031252;leading edge;0.0044253052377035!GO:0031968;organelle outer membrane;0.00442548102326292!GO:0030518;steroid hormone receptor signaling pathway;0.00443179772020193!GO:0031982;vesicle;0.00453789986964222!GO:0000287;magnesium ion binding;0.00456443705679052!GO:0016281;eukaryotic translation initiation factor 4F complex;0.00458284509194792!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.00464745042708106!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.00464745042708106!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.00468467895470582!GO:0002474;antigen processing and presentation of peptide antigen via MHC class I;0.00478138253198632!GO:0001772;immunological synapse;0.00482222191704992!GO:0005741;mitochondrial outer membrane;0.0048361768413829!GO:0000228;nuclear chromosome;0.00494887572951269!GO:0051223;regulation of protein transport;0.00512128619957847!GO:0043596;nuclear replication fork;0.00546733296127687!GO:0030330;DNA damage response, signal transduction by p53 class mediator;0.00579128431003169!GO:0043488;regulation of mRNA stability;0.00591271643284654!GO:0043487;regulation of RNA stability;0.00591271643284654!GO:0019901;protein kinase binding;0.0059711892067955!GO:0009124;nucleoside monophosphate biosynthetic process;0.0062591243638624!GO:0009123;nucleoside monophosphate metabolic process;0.0062591243638624!GO:0000922;spindle pole;0.00639107768581253!GO:0031124;mRNA 3'-end processing;0.00639107768581253!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;0.00641933608828165!GO:0004003;ATP-dependent DNA helicase activity;0.00656743198145181!GO:0051090;regulation of transcription factor activity;0.00658530990828106!GO:0006497;protein amino acid lipidation;0.00671726885822734!GO:0042771;DNA damage response, signal transduction by p53 class mediator resulting in induction of apoptosis;0.0069855721254606!GO:0016859;cis-trans isomerase activity;0.00700470257358368!GO:0006284;base-excision repair;0.00703073788313748!GO:0045936;negative regulation of phosphate metabolic process;0.00704478959753451!GO:0009889;regulation of biosynthetic process;0.00704478959753451!GO:0005774;vacuolar membrane;0.0071293057815303!GO:0042101;T cell receptor complex;0.0071986958770458!GO:0007264;small GTPase mediated signal transduction;0.00728451497039188!GO:0046966;thyroid hormone receptor binding;0.00728716696173527!GO:0016605;PML body;0.00729121733768537!GO:0007265;Ras protein signal transduction;0.00748977359511792!GO:0006268;DNA unwinding during replication;0.00748977359511792!GO:0006506;GPI anchor biosynthetic process;0.00759351031567425!GO:0030663;COPI coated vesicle membrane;0.00760487794735669!GO:0030126;COPI vesicle coat;0.00760487794735669!GO:0006338;chromatin remodeling;0.00762367579682149!GO:0051789;response to protein stimulus;0.00766213950192823!GO:0006986;response to unfolded protein;0.00766213950192823!GO:0030137;COPI-coated vesicle;0.00791154591026403!GO:0019900;kinase binding;0.00795974607105689!GO:0000184;mRNA catabolic process, nonsense-mediated decay;0.00805204057563553!GO:0000049;tRNA binding;0.00848561270175216!GO:0016272;prefoldin complex;0.00861198188550103!GO:0006505;GPI anchor metabolic process;0.00885913450552712!GO:0032200;telomere organization and biogenesis;0.00893478983148178!GO:0000723;telomere maintenance;0.00893478983148178!GO:0043414;biopolymer methylation;0.00893509760213531!GO:0048471;perinuclear region of cytoplasm;0.00893509760213531!GO:0003746;translation elongation factor activity;0.00920422114442301!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.00923593341942691!GO:0004177;aminopeptidase activity;0.00931455058671077!GO:0051251;positive regulation of lymphocyte activation;0.00939039547906112!GO:0008139;nuclear localization sequence binding;0.00947164355418829!GO:0019783;small conjugating protein-specific protease activity;0.00948725980385605!GO:0004437;inositol or phosphatidylinositol phosphatase activity;0.00949640672531398!GO:0019210;kinase inhibitor activity;0.00955582420839074!GO:0016788;hydrolase activity, acting on ester bonds;0.00961127202742082!GO:0006950;response to stress;0.0096560509341125!GO:0016584;nucleosome positioning;0.00970368367715113!GO:0016301;kinase activity;0.0100995502643312!GO:0045454;cell redox homeostasis;0.010175558512509!GO:0042770;DNA damage response, signal transduction;0.0102962140727594!GO:0031123;RNA 3'-end processing;0.0105121225331858!GO:0004532;exoribonuclease activity;0.0105661719499648!GO:0016896;exoribonuclease activity, producing 5'-phosphomonoesters;0.0105661719499648!GO:0031902;late endosome membrane;0.0107294026191949!GO:0004843;ubiquitin-specific protease activity;0.0107480376006941!GO:0030522;intracellular receptor-mediated signaling pathway;0.0107495748195058!GO:0051336;regulation of hydrolase activity;0.0109571226709998!GO:0046467;membrane lipid biosynthetic process;0.0112056241004592!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.0114009228008569!GO:0031625;ubiquitin protein ligase binding;0.0115895634356613!GO:0009161;ribonucleoside monophosphate metabolic process;0.0116418155647696!GO:0009156;ribonucleoside monophosphate biosynthetic process;0.0116418155647696!GO:0031410;cytoplasmic vesicle;0.0119934462284504!GO:0044438;microbody part;0.0121158390995406!GO:0044439;peroxisomal part;0.0121158390995406!GO:0016197;endosome transport;0.0122262738485136!GO:0030127;COPII vesicle coat;0.0126739690525897!GO:0012507;ER to Golgi transport vesicle membrane;0.0126739690525897!GO:0004860;protein kinase inhibitor activity;0.0127111530843672!GO:0048487;beta-tubulin binding;0.0127199046192947!GO:0005869;dynactin complex;0.0127669926542207!GO:0009112;nucleobase metabolic process;0.0128106076623717!GO:0031988;membrane-bound vesicle;0.0134297429545456!GO:0006091;generation of precursor metabolites and energy;0.0134835043228886!GO:0016790;thiolester hydrolase activity;0.0135594938856988!GO:0000339;RNA cap binding;0.0135835401005073!GO:0008408;3'-5' exonuclease activity;0.0137033089415108!GO:0009116;nucleoside metabolic process;0.0138007971115136!GO:0005765;lysosomal membrane;0.0138451334984597!GO:0044437;vacuolar part;0.0140321415167082!GO:0042393;histone binding;0.0140321415167082!GO:0006376;mRNA splice site selection;0.0145808670104054!GO:0000389;nuclear mRNA 3'-splice site recognition;0.0145808670104054!GO:0006357;regulation of transcription from RNA polymerase II promoter;0.0146520416747211!GO:0005669;transcription factor TFIID complex;0.0146591532694857!GO:0005070;SH3/SH2 adaptor activity;0.0146677619178179!GO:0000307;cyclin-dependent protein kinase holoenzyme complex;0.0148524447329638!GO:0004221;ubiquitin thiolesterase activity;0.0148986750509435!GO:0042326;negative regulation of phosphorylation;0.0153660810019135!GO:0030695;GTPase regulator activity;0.0159674232850226!GO:0008637;apoptotic mitochondrial changes;0.0161341112045968!GO:0051235;maintenance of localization;0.0162793368545111!GO:0035258;steroid hormone receptor binding;0.0163880707241606!GO:0051539;4 iron, 4 sulfur cluster binding;0.0164115840307631!GO:0008017;microtubule binding;0.0164115840307631!GO:0043281;regulation of caspase activity;0.0166721253583121!GO:0005521;lamin binding;0.0168894817166663!GO:0031903;microbody membrane;0.0170070254999163!GO:0005778;peroxisomal membrane;0.0170070254999163!GO:0030134;ER to Golgi transport vesicle;0.0177023407041812!GO:0044454;nuclear chromosome part;0.0179390284804211!GO:0046649;lymphocyte activation;0.0181239783025658!GO:0006367;transcription initiation from RNA polymerase II promoter;0.0182921157793811!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.0185339572116353!GO:0015002;heme-copper terminal oxidase activity;0.0185339572116353!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.0185339572116353!GO:0004129;cytochrome-c oxidase activity;0.0185339572116353!GO:0042158;lipoprotein biosynthetic process;0.0186462743289299!GO:0022406;membrane docking;0.0192472511587264!GO:0048278;vesicle docking;0.0192472511587264!GO:0015980;energy derivation by oxidation of organic compounds;0.0199507853189091!GO:0040029;regulation of gene expression, epigenetic;0.0201665466505458!GO:0043601;nuclear replisome;0.0204857495794595!GO:0030894;replisome;0.0204857495794595!GO:0032981;mitochondrial respiratory chain complex I assembly;0.020588180813065!GO:0010257;NADH dehydrogenase complex assembly;0.020588180813065!GO:0033108;mitochondrial respiratory chain complex assembly;0.020588180813065!GO:0006626;protein targeting to mitochondrion;0.0209329261627607!GO:0002763;positive regulation of myeloid leukocyte differentiation;0.0209762473870715!GO:0008047;enzyme activator activity;0.0210075837030536!GO:0006914;autophagy;0.0210075837030536!GO:0006919;caspase activation;0.0210075837030536!GO:0004197;cysteine-type endopeptidase activity;0.0210862560415442!GO:0016311;dephosphorylation;0.0212127356259191!GO:0043621;protein self-association;0.0212349562120015!GO:0030258;lipid modification;0.0212349562120015!GO:0046588;negative regulation of calcium-dependent cell-cell adhesion;0.0212349562120015!GO:0046586;regulation of calcium-dependent cell-cell adhesion;0.0212349562120015!GO:0051540;metal cluster binding;0.021454991995672!GO:0051536;iron-sulfur cluster binding;0.021454991995672!GO:0019079;viral genome replication;0.022026363759568!GO:0006144;purine base metabolic process;0.02220794094302!GO:0051059;NF-kappaB binding;0.0222655358123071!GO:0000738;DNA catabolic process, exonucleolytic;0.0226365438501801!GO:0006904;vesicle docking during exocytosis;0.0226432005897632!GO:0016773;phosphotransferase activity, alcohol group as acceptor;0.0227842737518937!GO:0030880;RNA polymerase complex;0.0229823806017453!GO:0030119;AP-type membrane coat adaptor complex;0.0230340672157544!GO:0030125;clathrin vesicle coat;0.0232344002556321!GO:0030665;clathrin coated vesicle membrane;0.0232344002556321!GO:0006378;mRNA polyadenylation;0.0233357356428894!GO:0009127;purine nucleoside monophosphate biosynthetic process;0.0233357356428894!GO:0009167;purine ribonucleoside monophosphate metabolic process;0.0233357356428894!GO:0009126;purine nucleoside monophosphate metabolic process;0.0233357356428894!GO:0009168;purine ribonucleoside monophosphate biosynthetic process;0.0233357356428894!GO:0016891;endoribonuclease activity, producing 5'-phosphomonoesters;0.0233618408818081!GO:0000059;protein import into nucleus, docking;0.0234089807236732!GO:0016408;C-acyltransferase activity;0.0234299668814592!GO:0045792;negative regulation of cell size;0.0235471443332937!GO:0000018;regulation of DNA recombination;0.0235471443332937!GO:0043022;ribosome binding;0.0237647086805977!GO:0000781;chromosome, telomeric region;0.0237647086805977!GO:0022411;cellular component disassembly;0.0240996177362571!GO:0051881;regulation of mitochondrial membrane potential;0.0241790738989893!GO:0008180;signalosome;0.0247080000938394!GO:0030131;clathrin adaptor complex;0.0250186898110802!GO:0030176;integral to endoplasmic reticulum membrane;0.0250186898110802!GO:0016893;endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters;0.0255498344168224!GO:0042608;T cell receptor binding;0.0266603271596176!GO:0016023;cytoplasmic membrane-bound vesicle;0.0266603271596176!GO:0050852;T cell receptor signaling pathway;0.026684727699563!GO:0007259;JAK-STAT cascade;0.026687314292509!GO:0016796;exonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters;0.0268827482648702!GO:0030867;rough endoplasmic reticulum membrane;0.0269089435254294!GO:0046426;negative regulation of JAK-STAT cascade;0.026934464318674!GO:0000726;non-recombinational repair;0.0273281369650036!GO:0006007;glucose catabolic process;0.0274890395180543!GO:0044450;microtubule organizing center part;0.0274890395180543!GO:0000792;heterochromatin;0.0276813145968239!GO:0017134;fibroblast growth factor binding;0.0276813145968239!GO:0006839;mitochondrial transport;0.0276813145968239!GO:0005876;spindle microtubule;0.0279495037549391!GO:0008320;protein transmembrane transporter activity;0.0279842516788383!GO:0051098;regulation of binding;0.0280414628672997!GO:0008629;induction of apoptosis by intracellular signals;0.0280960542740226!GO:0004576;oligosaccharyl transferase activity;0.0281154504372063!GO:0004659;prenyltransferase activity;0.0284968272778836!GO:0046483;heterocycle metabolic process;0.029055097673075!GO:0042532;negative regulation of tyrosine phosphorylation of STAT protein;0.029065202812914!GO:0042518;negative regulation of tyrosine phosphorylation of Stat3 protein;0.029065202812914!GO:0050732;negative regulation of peptidyl-tyrosine phosphorylation;0.029065202812914!GO:0030308;negative regulation of cell growth;0.0291251554984907!GO:0050870;positive regulation of T cell activation;0.0292786493907203!GO:0008097;5S rRNA binding;0.0297510291916713!GO:0003725;double-stranded RNA binding;0.0298106522885372!GO:0000178;exosome (RNase complex);0.0301118834538716!GO:0051338;regulation of transferase activity;0.0309902957953902!GO:0006595;polyamine metabolic process;0.0311101118733456!GO:0033116;ER-Golgi intermediate compartment membrane;0.0318906877130767!GO:0008250;oligosaccharyl transferase complex;0.0320745883761504!GO:0004428;inositol or phosphatidylinositol kinase activity;0.0320781859563055!GO:0051452;cellular pH reduction;0.0322259107407992!GO:0051453;regulation of cellular pH;0.0322259107407992!GO:0045851;pH reduction;0.0322259107407992!GO:0003988;acetyl-CoA C-acyltransferase activity;0.0324305828718705!GO:0050865;regulation of cell activation;0.0327452845832851!GO:0005832;chaperonin-containing T-complex;0.0329179754515831!GO:0051249;regulation of lymphocyte activation;0.0332700625416923!GO:0006356;regulation of transcription from RNA polymerase I promoter;0.0337828708286198!GO:0050681;androgen receptor binding;0.033839950614296!GO:0000096;sulfur amino acid metabolic process;0.0339124933561985!GO:0000288;mRNA catabolic process, deadenylation-dependent decay;0.0343143215179426!GO:0050811;GABA receptor binding;0.0343816897762393!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.034852500135804!GO:0005874;microtubule;0.035058800452645!GO:0006406;mRNA export from nucleus;0.0351880504705755!GO:0043549;regulation of kinase activity;0.0352891641118405!GO:0033673;negative regulation of kinase activity;0.0359658703228187!GO:0006469;negative regulation of protein kinase activity;0.0359658703228187!GO:0007034;vacuolar transport;0.0363585161486157!GO:0022884;macromolecule transmembrane transporter activity;0.0363585161486157!GO:0015450;P-P-bond-hydrolysis-driven protein transmembrane transporter activity;0.0363585161486157!GO:0006984;ER-nuclear signaling pathway;0.0379865151599476!GO:0000152;nuclear ubiquitin ligase complex;0.0380201087131836!GO:0045045;secretory pathway;0.0380956504795514!GO:0002378;immunoglobulin biosynthetic process;0.0380956504795514!GO:0001911;negative regulation of leukocyte mediated cytotoxicity;0.0380956504795514!GO:0001915;negative regulation of T cell mediated cytotoxicity;0.0380956504795514!GO:0048524;positive regulation of viral reproduction;0.0381368461100053!GO:0005083;small GTPase regulator activity;0.0381701764387641!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.0381767534129431!GO:0000428;DNA-directed RNA polymerase complex;0.0381767534129431!GO:0005784;translocon complex;0.0381767534129431!GO:0031570;DNA integrity checkpoint;0.0385440348680674!GO:0032940;secretion by cell;0.0385790776442224!GO:0030833;regulation of actin filament polymerization;0.0386969108954205!GO:0016407;acetyltransferase activity;0.039545625771571!GO:0031577;spindle checkpoint;0.03990419824501!GO:0005062;hematopoietin/interferon-class (D200-domain) cytokine receptor signal transducer activity;0.0399438645717498!GO:0006266;DNA ligation;0.0399651035831695!GO:0043161;proteasomal ubiquitin-dependent protein catabolic process;0.0402894237892993!GO:0000819;sister chromatid segregation;0.040755594262099!GO:0030132;clathrin coat of coated pit;0.0407704028873064!GO:0007004;telomere maintenance via telomerase;0.0411632107545371!GO:0005095;GTPase inhibitor activity;0.0411632107545371!GO:0006518;peptide metabolic process;0.0423190874543689!GO:0030332;cyclin binding;0.0425171369106581!GO:0007021;tubulin folding;0.0425275238630434!GO:0006275;regulation of DNA replication;0.0426315080469052!GO:0009966;regulation of signal transduction;0.0430897003586997!GO:0019976;interleukin-2 binding;0.0432570491737287!GO:0004911;interleukin-2 receptor activity;0.0432570491737287!GO:0003887;DNA-directed DNA polymerase activity;0.0439425092780387!GO:0008276;protein methyltransferase activity;0.044417736265134!GO:0007030;Golgi organization and biogenesis;0.0452664998654208!GO:0001784;phosphotyrosine binding;0.0452664998654208!GO:0000725;recombinational repair;0.0457186058854299!GO:0000724;double-strand break repair via homologous recombination;0.0457186058854299!GO:0051348;negative regulation of transferase activity;0.0458128769650021!GO:0016791;phosphoric monoester hydrolase activity;0.0460660887957286!GO:0019058;viral infectious cycle;0.0466596503317782!GO:0004540;ribonuclease activity;0.0468052532503188!GO:0043280;positive regulation of caspase activity;0.0468052532503188!GO:0000070;mitotic sister chromatid segregation;0.0469665166098365!GO:0016126;sterol biosynthetic process;0.0479067446981733!GO:0000175;3'-5'-exoribonuclease activity;0.0481028716781875!GO:0000123;histone acetyltransferase complex;0.0482052220220845!GO:0004748;ribonucleoside-diphosphate reductase activity;0.0482052220220845!GO:0016728;oxidoreductase activity, acting on CH or CH2 groups, disulfide as acceptor;0.0482052220220845!GO:0045892;negative regulation of transcription, DNA-dependent;0.0482052220220845!GO:0008625;induction of apoptosis via death domain receptors;0.0498221280043852!GO:0051219;phosphoprotein binding;0.0499595997623018!GO:0016860;intramolecular oxidoreductase activity;0.0499595997623018!GO:0045185;maintenance of protein localization;0.0499595997623018 | |||
|sample_id=11791 | |sample_id=11791 | ||
|sample_note= | |sample_note= | ||
| Line 76: | Line 99: | ||
|sample_tissue=blood | |sample_tissue=blood | ||
|top_motifs=ELF1,2,4:2.16904163239;CDX1,2,4:2.03813442807;PAX4:2.03280284161;RUNX1..3:1.98072468986;TLX2:1.97476478885;PAX3,7:1.79170561604;POU1F1:1.68705780402;DMAP1_NCOR{1,2}_SMARC:1.56880716403;STAT1,3:1.53916052255;ETS1,2:1.5271135445;ZBTB16:1.4562979619;RORA:1.39002817202;PDX1:1.28887687692;FOXO1,3,4:1.17302552005;SPI1:1.17266528694;GATA6:1.07715329877;SPIB:1.05709602366;TGIF1:1.05573888884;NKX2-2,8:1.04316023669;IRF1,2:1.01963218088;ELK1,4_GABP{A,B1}:1.01897566618;E2F1..5:0.991575779191;CRX:0.939281026207;PBX1:0.921672266287;IKZF2:0.915960331827;YY1:0.906173063204;LEF1_TCF7_TCF7L1,2:0.894173131223;FOX{D1,D2}:0.819702264937;BREu{core}:0.798546429408;FOX{F1,F2,J1}:0.793481248745;NKX6-1,2:0.702104748628;SPZ1:0.684442369215;NKX2-1,4:0.621034289981;POU2F1..3:0.586847709137;BPTF:0.569543894886;IRF7:0.555194431579;MYB:0.507861227812;NFY{A,B,C}:0.504509859554;HMX1:0.479938235126;FOXA2:0.445092531561;NANOG{mouse}:0.433949745725;ALX1:0.430128075127;PITX1..3:0.406055250938;SNAI1..3:0.37403083911;NKX3-1:0.350924248273;NR5A1,2:0.349829838259;CUX2:0.307638618792;ZEB1:0.256170573481;T:0.232695114058;NFKB1_REL_RELA:0.220322355792;FOXP1:0.218974500497;FOXN1:0.216309826826;OCT4_SOX2{dimer}:0.214274103493;ATF5_CREB3:0.210626221998;HOX{A6,A7,B6,B7}:0.199098875864;AHR_ARNT_ARNT2:0.18126519948;FOX{I1,J2}:0.135303001749;LMO2:0.131472549787;NRF1:0.119489874003;SOX5:0.110758254906;MYOD1:0.100500635227;PAX2:0.0467248452602;NR3C1:0.0318301034629;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.0297442460989;PAX8:0.0266852566807;STAT5{A,B}:0.0107671374844;STAT2,4,6:0.00275698832647;SREBF1,2:0.00260447845361;GFI1:-0.0113094194289;RFX2..5_RFXANK_RFXAP:-0.0122891873258;VSX1,2:-0.0127943683896;NFIL3:-0.0288129817696;POU3F1..4:-0.0472694458425;ZNF143:-0.0521883087814;EP300:-0.0545793005613;HNF4A_NR2F1,2:-0.0662752338615;SMAD1..7,9:-0.0683812749299;HES1:-0.0712785629817;RREB1:-0.0745526781452;NFATC1..3:-0.103868390203;HBP1_HMGB_SSRP1_UBTF:-0.103924727803;PPARG:-0.119957299273;CREB1:-0.132932637365;GLI1..3:-0.154024349303;PAX6:-0.158128985068;EVI1:-0.163835119618;TOPORS:-0.170117827891;ATF2:-0.176601178057;JUN:-0.187522756217;FOXM1:-0.194500536788;AIRE:-0.206740050931;ATF6:-0.207964718049;TAL1_TCF{3,4,12}:-0.210123987987;AR:-0.225946589039;HNF1A:-0.238453075916;FOXQ1:-0.243961727518;HAND1,2:-0.250144345623;ARID5B:-0.258573873917;GCM1,2:-0.284753141376;PRRX1,2:-0.284998945492;NKX2-3_NKX2-5:-0.294821546722;RXRA_VDR{dimer}:-0.299524564718;HMGA1,2:-0.305581702467;DBP:-0.344910636576;MYFfamily:-0.371703018629;NFE2L1:-0.404998674287;ZNF148:-0.432230201269;SOX{8,9,10}:-0.432665488622;POU5F1:-0.444240391525;SOX2:-0.448349830356;ALX4:-0.459412716517;ATF4:-0.463642835823;NR1H4:-0.465247526444;NFIX:-0.480680016666;ZNF238:-0.486104426912;FOXP3:-0.486837961474;FOXD3:-0.506513511671;HOXA9_MEIS1:-0.507637364997;ZNF423:-0.543298300069;TP53:-0.571797654468;CEBPA,B_DDIT3:-0.586849214118;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.588916230749;FOSL2:-0.592881875387;NANOG:-0.594355189418;ZNF384:-0.601008074453;ESR1:-0.627514516537;TFAP4:-0.634449654061;PAX5:-0.634634851205;LHX3,4:-0.640463950817;TFDP1:-0.649788994458;BACH2:-0.650081115669;FOS_FOS{B,L1}_JUN{B,D}:-0.65797309943;RFX1:-0.660608336399;ZBTB6:-0.706583407371;REST:-0.707549515317;NHLH1,2:-0.710613945329;HLF:-0.751254731374;SRF:-0.754323031892;SOX17:-0.754388247116;NFE2:-0.776316621188;TFCP2:-0.781890882116;UFEwm:-0.803864241959;MED-1{core}:-0.808412939181;MZF1:-0.809326352118;MEF2{A,B,C,D}:-0.820331753955;RBPJ:-0.858204865535;ADNP_IRX_SIX_ZHX:-0.866157295719;KLF4:-0.926042527418;PRDM1:-0.938164263098;MYBL2:-0.942634028641;EBF1:-0.954766504398;NFE2L2:-0.959102968075;HOX{A5,B5}:-0.967676734532;bHLH_family:-0.98017352076;HIF1A:-1.03771849776;POU6F1:-1.08202292734;ZFP161:-1.10738240725;TBX4,5:-1.16403483455;GTF2I:-1.2105167058;MTE{core}:-1.21491699018;EGR1..3:-1.22871298808;GFI1B:-1.23497652365;ONECUT1,2:-1.24082316265;GATA4:-1.28050162622;MAZ:-1.30026319942;MAFB:-1.30356459142;ESRRA:-1.31482603352;GZF1:-1.33098443802;RXR{A,B,G}:-1.3356879846;MTF1:-1.35394800625;NR6A1:-1.36117446074;CDC5L:-1.37051554997;PAX1,9:-1.41657939511;XBP1:-1.43728726446;HSF1,2:-1.43887631689;ZIC1..3:-1.4541506938;PATZ1:-1.46039961442;XCPE1{core}:-1.50397040336;TEAD1:-1.51315844781;NKX3-2:-1.51503105438;HIC1:-1.53500331095;GTF2A1,2:-1.55568319483;HOX{A4,D4}:-1.56944032271;EN1,2:-1.5753328712;TFAP2B:-1.6507401777;TBP:-1.69048956668;TEF:-1.81110019943;TFAP2{A,C}:-1.83250953282;TLX1..3_NFIC{dimer}:-1.85775200375;IKZF1:-1.94368184902;FOXL1:-2.10241527742;SP1:-2.11600198285 | |top_motifs=ELF1,2,4:2.16904163239;CDX1,2,4:2.03813442807;PAX4:2.03280284161;RUNX1..3:1.98072468986;TLX2:1.97476478885;PAX3,7:1.79170561604;POU1F1:1.68705780402;DMAP1_NCOR{1,2}_SMARC:1.56880716403;STAT1,3:1.53916052255;ETS1,2:1.5271135445;ZBTB16:1.4562979619;RORA:1.39002817202;PDX1:1.28887687692;FOXO1,3,4:1.17302552005;SPI1:1.17266528694;GATA6:1.07715329877;SPIB:1.05709602366;TGIF1:1.05573888884;NKX2-2,8:1.04316023669;IRF1,2:1.01963218088;ELK1,4_GABP{A,B1}:1.01897566618;E2F1..5:0.991575779191;CRX:0.939281026207;PBX1:0.921672266287;IKZF2:0.915960331827;YY1:0.906173063204;LEF1_TCF7_TCF7L1,2:0.894173131223;FOX{D1,D2}:0.819702264937;BREu{core}:0.798546429408;FOX{F1,F2,J1}:0.793481248745;NKX6-1,2:0.702104748628;SPZ1:0.684442369215;NKX2-1,4:0.621034289981;POU2F1..3:0.586847709137;BPTF:0.569543894886;IRF7:0.555194431579;MYB:0.507861227812;NFY{A,B,C}:0.504509859554;HMX1:0.479938235126;FOXA2:0.445092531561;NANOG{mouse}:0.433949745725;ALX1:0.430128075127;PITX1..3:0.406055250938;SNAI1..3:0.37403083911;NKX3-1:0.350924248273;NR5A1,2:0.349829838259;CUX2:0.307638618792;ZEB1:0.256170573481;T:0.232695114058;NFKB1_REL_RELA:0.220322355792;FOXP1:0.218974500497;FOXN1:0.216309826826;OCT4_SOX2{dimer}:0.214274103493;ATF5_CREB3:0.210626221998;HOX{A6,A7,B6,B7}:0.199098875864;AHR_ARNT_ARNT2:0.18126519948;FOX{I1,J2}:0.135303001749;LMO2:0.131472549787;NRF1:0.119489874003;SOX5:0.110758254906;MYOD1:0.100500635227;PAX2:0.0467248452602;NR3C1:0.0318301034629;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.0297442460989;PAX8:0.0266852566807;STAT5{A,B}:0.0107671374844;STAT2,4,6:0.00275698832647;SREBF1,2:0.00260447845361;GFI1:-0.0113094194289;RFX2..5_RFXANK_RFXAP:-0.0122891873258;VSX1,2:-0.0127943683896;NFIL3:-0.0288129817696;POU3F1..4:-0.0472694458425;ZNF143:-0.0521883087814;EP300:-0.0545793005613;HNF4A_NR2F1,2:-0.0662752338615;SMAD1..7,9:-0.0683812749299;HES1:-0.0712785629817;RREB1:-0.0745526781452;NFATC1..3:-0.103868390203;HBP1_HMGB_SSRP1_UBTF:-0.103924727803;PPARG:-0.119957299273;CREB1:-0.132932637365;GLI1..3:-0.154024349303;PAX6:-0.158128985068;EVI1:-0.163835119618;TOPORS:-0.170117827891;ATF2:-0.176601178057;JUN:-0.187522756217;FOXM1:-0.194500536788;AIRE:-0.206740050931;ATF6:-0.207964718049;TAL1_TCF{3,4,12}:-0.210123987987;AR:-0.225946589039;HNF1A:-0.238453075916;FOXQ1:-0.243961727518;HAND1,2:-0.250144345623;ARID5B:-0.258573873917;GCM1,2:-0.284753141376;PRRX1,2:-0.284998945492;NKX2-3_NKX2-5:-0.294821546722;RXRA_VDR{dimer}:-0.299524564718;HMGA1,2:-0.305581702467;DBP:-0.344910636576;MYFfamily:-0.371703018629;NFE2L1:-0.404998674287;ZNF148:-0.432230201269;SOX{8,9,10}:-0.432665488622;POU5F1:-0.444240391525;SOX2:-0.448349830356;ALX4:-0.459412716517;ATF4:-0.463642835823;NR1H4:-0.465247526444;NFIX:-0.480680016666;ZNF238:-0.486104426912;FOXP3:-0.486837961474;FOXD3:-0.506513511671;HOXA9_MEIS1:-0.507637364997;ZNF423:-0.543298300069;TP53:-0.571797654468;CEBPA,B_DDIT3:-0.586849214118;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.588916230749;FOSL2:-0.592881875387;NANOG:-0.594355189418;ZNF384:-0.601008074453;ESR1:-0.627514516537;TFAP4:-0.634449654061;PAX5:-0.634634851205;LHX3,4:-0.640463950817;TFDP1:-0.649788994458;BACH2:-0.650081115669;FOS_FOS{B,L1}_JUN{B,D}:-0.65797309943;RFX1:-0.660608336399;ZBTB6:-0.706583407371;REST:-0.707549515317;NHLH1,2:-0.710613945329;HLF:-0.751254731374;SRF:-0.754323031892;SOX17:-0.754388247116;NFE2:-0.776316621188;TFCP2:-0.781890882116;UFEwm:-0.803864241959;MED-1{core}:-0.808412939181;MZF1:-0.809326352118;MEF2{A,B,C,D}:-0.820331753955;RBPJ:-0.858204865535;ADNP_IRX_SIX_ZHX:-0.866157295719;KLF4:-0.926042527418;PRDM1:-0.938164263098;MYBL2:-0.942634028641;EBF1:-0.954766504398;NFE2L2:-0.959102968075;HOX{A5,B5}:-0.967676734532;bHLH_family:-0.98017352076;HIF1A:-1.03771849776;POU6F1:-1.08202292734;ZFP161:-1.10738240725;TBX4,5:-1.16403483455;GTF2I:-1.2105167058;MTE{core}:-1.21491699018;EGR1..3:-1.22871298808;GFI1B:-1.23497652365;ONECUT1,2:-1.24082316265;GATA4:-1.28050162622;MAZ:-1.30026319942;MAFB:-1.30356459142;ESRRA:-1.31482603352;GZF1:-1.33098443802;RXR{A,B,G}:-1.3356879846;MTF1:-1.35394800625;NR6A1:-1.36117446074;CDC5L:-1.37051554997;PAX1,9:-1.41657939511;XBP1:-1.43728726446;HSF1,2:-1.43887631689;ZIC1..3:-1.4541506938;PATZ1:-1.46039961442;XCPE1{core}:-1.50397040336;TEAD1:-1.51315844781;NKX3-2:-1.51503105438;HIC1:-1.53500331095;GTF2A1,2:-1.55568319483;HOX{A4,D4}:-1.56944032271;EN1,2:-1.5753328712;TFAP2B:-1.6507401777;TBP:-1.69048956668;TEF:-1.81110019943;TFAP2{A,C}:-1.83250953282;TLX1..3_NFIC{dimer}:-1.85775200375;IKZF1:-1.94368184902;FOXL1:-2.10241527742;SP1:-2.11600198285 | ||
|xref= | |||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11791-124B9;search_select_hide=table117:FF:11791-124B9 | |||
}} | }} | ||
Latest revision as of 18:20, 4 June 2020
| Name: | CD4+CD25-CD45RA+ naive conventional T cells expanded, donor1 |
|---|---|
| Species: | Human (Homo sapiens) |
| Library ID: | CNhs13202 |
| Sample type: | primary cells |
| Genomic View: | UCSC |
| RefEX: | Specific genes |
| FANTOM CAT: | 1, 2, 3, 4, 5, 6, 7 |
| CAGEd-oPOSSUM: | link |
| ZENBU report : | link |
| Additional information | ||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Sample information
RNA information
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| CAGE Accession numbers | ||||||||||||||||||||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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| Download raw sequence, BAM & CTSS | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs13202
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs13202
| Novel motif | Logo | P-value |
|---|---|---|
| 1 | 1 | 0.117 |
| 10 | 10 | 0.0102 |
| 100 | 100 | 0.838 |
| 101 | 101 | 0.141 |
| 102 | 102 | 0.64 |
| 103 | 103 | 0.131 |
| 104 | 104 | 0.582 |
| 105 | 105 | 0.114 |
| 106 | 106 | 0.382 |
| 107 | 107 | 0.552 |
| 108 | 108 | 0.674 |
| 109 | 109 | 0.0662 |
| 11 | 11 | 0.0401 |
| 110 | 110 | 0.348 |
| 111 | 111 | 0.259 |
| 112 | 112 | 0.163 |
| 113 | 113 | 0.532 |
| 114 | 114 | 0.165 |
| 115 | 115 | 0.0757 |
| 116 | 116 | 0.982 |
| 117 | 117 | 0.0112 |
| 118 | 118 | 0.472 |
| 119 | 119 | 0.494 |
| 12 | 12 | 0.648 |
| 120 | 120 | 0.511 |
| 121 | 121 | 0.859 |
| 122 | 122 | 0.366 |
| 123 | 123 | 0.00547 |
| 124 | 124 | 0.0771 |
| 125 | 125 | 0.886 |
| 126 | 126 | 0.47 |
| 127 | 127 | 0.344 |
| 128 | 128 | 0.538 |
| 129 | 129 | 0.115 |
| 13 | 13 | 0.458 |
| 130 | 130 | 0.951 |
| 131 | 131 | 0.517 |
| 132 | 132 | 0.743 |
| 133 | 133 | 0.244 |
| 134 | 134 | 0.594 |
| 135 | 135 | 0.613 |
| 136 | 136 | 0.772 |
| 137 | 137 | 0.0878 |
| 138 | 138 | 0.201 |
| 139 | 139 | 0.279 |
| 14 | 14 | 0.59 |
| 140 | 140 | 0.0309 |
| 141 | 141 | 0.547 |
| 142 | 142 | 0.683 |
| 143 | 143 | 8.27297e-4 |
| 144 | 144 | 0.622 |
| 145 | 145 | 0.222 |
| 146 | 146 | 0.383 |
| 147 | 147 | 0.091 |
| 148 | 148 | 0.0356 |
| 149 | 149 | 0.96 |
| 15 | 15 | 0.108 |
| 150 | 150 | 0.646 |
| 151 | 151 | 0.512 |
| 152 | 152 | 0.319 |
| 153 | 153 | 0.788 |
| 154 | 154 | 0.778 |
| 155 | 155 | 0.0196 |
| 156 | 156 | 0.565 |
| 157 | 157 | 0.196 |
| 158 | 158 | 0.0732 |
| 159 | 159 | 0.73 |
| 16 | 16 | 0.545 |
| 160 | 160 | 0.249 |
| 161 | 161 | 0.145 |
| 162 | 162 | 0.126 |
| 163 | 163 | 0.907 |
| 164 | 164 | 0.147 |
| 165 | 165 | 0.13 |
| 166 | 166 | 0.659 |
| 167 | 167 | 0.138 |
| 168 | 168 | 0.223 |
| 169 | 169 | 0.368 |
| 17 | 17 | 0.79 |
| 18 | 18 | 0.569 |
| 19 | 19 | 0.767 |
| 2 | 2 | 0.791 |
| 20 | 20 | 0.963 |
| 21 | 21 | 0.271 |
| 22 | 22 | 0.877 |
| 23 | 23 | 0.732 |
| 24 | 24 | 0.712 |
| 25 | 25 | 0.0673 |
| 26 | 26 | 0.149 |
| 27 | 27 | 0.0832 |
| 28 | 28 | 0.577 |
| 29 | 29 | 0.0178 |
| 3 | 3 | 0.0343 |
| 30 | 30 | 0.299 |
| 31 | 31 | 0.897 |
| 32 | 32 | 0.552 |
| 33 | 33 | 0.334 |
| 34 | 34 | 0.903 |
| 35 | 35 | 0.104 |
| 36 | 36 | 0.0174 |
| 37 | 37 | 0.212 |
| 38 | 38 | 0.597 |
| 39 | 39 | 0.274 |
| 4 | 4 | 0.607 |
| 40 | 40 | 0.32 |
| 41 | 41 | 0.402 |
| 42 | 42 | 0.0618 |
| 43 | 43 | 0.314 |
| 44 | 44 | 0.311 |
| 45 | 45 | 0.66 |
| 46 | 46 | 0.0483 |
| 47 | 47 | 0.0106 |
| 48 | 48 | 0.056 |
| 49 | 49 | 0.118 |
| 5 | 5 | 0.417 |
| 50 | 50 | 0.866 |
| 51 | 51 | 0.479 |
| 52 | 52 | 0.397 |
| 53 | 53 | 0.29 |
| 54 | 54 | 0.699 |
| 55 | 55 | 0.537 |
| 56 | 56 | 0.408 |
| 57 | 57 | 0.264 |
| 58 | 58 | 0.0827 |
| 59 | 59 | 0.264 |
| 6 | 6 | 0.795 |
| 60 | 60 | 0.38 |
| 61 | 61 | 0.14 |
| 62 | 62 | 0.0263 |
| 63 | 63 | 0.512 |
| 64 | 64 | 0.112 |
| 65 | 65 | 0.733 |
| 66 | 66 | 0.943 |
| 67 | 67 | 0.743 |
| 68 | 68 | 0.75 |
| 69 | 69 | 0.815 |
| 7 | 7 | 0.161 |
| 70 | 70 | 0.0559 |
| 71 | 71 | 0.0198 |
| 72 | 72 | 0.0963 |
| 73 | 73 | 0.69 |
| 74 | 74 | 0.689 |
| 75 | 75 | 0.0156 |
| 76 | 76 | 0.543 |
| 77 | 77 | 0.648 |
| 78 | 78 | 0.026 |
| 79 | 79 | 0.239 |
| 8 | 8 | 0.383 |
| 80 | 80 | 0.0261 |
| 81 | 81 | 0.436 |
| 82 | 82 | 0.0597 |
| 83 | 83 | 0.505 |
| 84 | 84 | 0.278 |
| 85 | 85 | 0.829 |
| 86 | 86 | 0.267 |
| 87 | 87 | 0.897 |
| 88 | 88 | 0.898 |
| 89 | 89 | 0.73 |
| 9 | 9 | 0.68 |
| 90 | 90 | 0.0148 |
| 91 | 91 | 0.398 |
| 92 | 92 | 0.289 |
| 93 | 93 | 0.267 |
| 94 | 94 | 0.0538 |
| 95 | 95 | 0.0621 |
| 96 | 96 | 0.0771 |
| 97 | 97 | 0.341 |
| 98 | 98 | 0.316 |
| 99 | 99 | 0.27 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs13202
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
EFO:0002091 biological replicate
FF:0000002 in vivo cell sample
FF:0000210 human sample
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
NA
