FF:11793-124C2: Difference between revisions

Latest revision as of 18:20, 4 June 2020

Name:	CD4+CD25+CD45RA+ naive regulatory T cells expanded, donor1
Species:	Human (Homo sapiens)
Library ID:	CNhs13203
Sample type:	primary cells
Genomic View:	UCSC
RefEX:	Specific genes
FANTOM CAT:	1, 2, 3, 4, 5, 6, 7
CAGEd-oPOSSUM:	link
ZENBU report :	link

Additional information

Sample information

strain	NA
tissue	blood
dev stage	NA
sex	male
age	25
cell type	T cell
cell line	NA
company	NA
collaboration	Michael Rehli (University of Regensberg)
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	15
catalog number	NA
sample type	total RNA
extraction protocol (Details)	OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers

Method		Sample accession id
CAGE		SAMD00004706

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs13203		CAGE		DRX008179		DRR009051

Accession ID Hg19

Library id		BAM		CTSS
CNhs13203		DRZ000476		DRZ001861

Accession ID Hg38

Library id		BAM		CTSS
CNhs13203		DRZ011826		DRZ013211

Download raw sequence, BAM & CTSS

Hg19

Fasta	BAM	CTSS
download	download	donwload

Hg38

BAM	CTSS
download	donwload

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

Coexpression cluster	score
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral	0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate	0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural	0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial	0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel	0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS	0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils	0.264
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural	0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis	-0.144
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy	0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood	0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate	0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma	-0.0195
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial	0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic	0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat	0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal	0
C113-thyroid-throat-lung-lymph-small-colon-trachea	0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma	0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus	0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea	0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal	0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula	0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD19	0
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils	0
C120-immature-salivary-tongue-skin-cervical-CD14-CD34	0
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B	0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal	0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils	0.0671
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte	0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus	0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain	0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil	0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP	0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small	0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD4	0
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar	0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin	0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived	0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma	0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis	0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum	0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal	0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic	0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal	0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal	0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen	0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen	0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B	0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair	0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast	0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis	0.49
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal	0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell	0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral	4.41725e-4
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal	0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum	0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue	0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small	0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast	0.0671
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung	0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular	0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate	0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid	0
C156-plasma-splenic-hereditary-B-large-xeroderma-b	0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea	0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen	0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal	0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain	0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral	0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta	0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon	0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal	0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma	0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial	0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung	0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD4	0
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral	0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma	0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage	0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet	0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye	0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes	0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose	0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils	0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural	0.287
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19	0.248
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous	0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus	0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil	0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood	0.836
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle	-0.309
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar	0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute	0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt	0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid	0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis	0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid	0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage	0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat	0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen	0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma	0
C190-colon-small-rectum-duodenum-appendix-temporal-oral	0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic	0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD4	0
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD14	0
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar	0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal	0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial	0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival	0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes	0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma	0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast	0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat	0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed	-0.0615
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall	0
C202-salivary-skin-penis-tongue-uterus-cervical-immature	0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic	0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD34	0
C205-mycosis-cord-hairy-xeroderma-CD4-B-b	0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary	0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte	0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous	0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen	0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic	0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil	0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney	0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD34	0
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral	0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain	0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature	0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD34	0
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital	0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary	0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum	0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD19	0.0671
C220-Adipocyte-mature-left-breast-skin-liver-adipose	0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular	0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte	-0.0918
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte	0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal	0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal	0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal	0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue	0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult	0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart	0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD14	0.0671
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung	0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis	0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum	0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF7	0
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma	0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas	0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma	0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial	0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell	0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy	0.825
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral	0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal	0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus	0.0794
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach	0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing	0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage	0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic	0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory	0.44
C247-pons-locus-medulla-spinal-paracentral-medial-occipital	0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast	0.621
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial	0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall	0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD4	0
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue	0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma	0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum	0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris	0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast	0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla	0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral	0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric	0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing	0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole	0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood	0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal	0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms	0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil	0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute	0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8	0.369
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast	0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear	0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate	0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD4	0
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung	0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth	0.758
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum	0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil	0.565
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast	0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte	0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal	0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal	0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma	0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory	0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial	0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic	0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD4	0.0671
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small	-0.254
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat	0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular	0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus	0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic	0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial	0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal	0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal	0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left	0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart	0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature	0.215
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea	0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal	0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD34	0
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral	0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte	0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed	0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral	0.125
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital	0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood	0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala	0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal	0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils	0.337
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic	0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid	0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole	0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus	0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea	0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory	0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen	0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile	0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula	0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt	0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea	0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms	0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD133	0
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus	0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small	0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal	0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon	0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder	0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature	0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS	0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel	0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix	0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus	0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma	0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas	0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma	0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas	0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma	0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary	0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature	0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma	0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue	0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural	0.902
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H9	0
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic	0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature	0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical	0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b	0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph	0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute	0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic	0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils	0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus	0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung	0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma	0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK	0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast	0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue	0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate	0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left	0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal	0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy	0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral	0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell	0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD8	0
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea	0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal	0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD34	0
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast	0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid	0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD34	0
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic	0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon	0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma	0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma	0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic	0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived	0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic	0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left	0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen	0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair	0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole	0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular	0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma	0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid	0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix	0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain	0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole	0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs13203

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	8.89312e-7
MA0003.1	MA0003.1	0.449
MA0004.1	MA0004.1	0.737
MA0006.1	MA0006.1	0.458
MA0007.1	MA0007.1	0.661
MA0009.1	MA0009.1	0.619
MA0014.1	MA0014.1	0.978
MA0017.1	MA0017.1	0.0146
MA0018.2	MA0018.2	0.763
MA0019.1	MA0019.1	0.913
MA0024.1	MA0024.1	0.958
MA0025.1	MA0025.1	0.184
MA0027.1	MA0027.1	0.874
MA0028.1	MA0028.1	3.75382e-6
MA0029.1	MA0029.1	0.593
MA0030.1	MA0030.1	0.754
MA0031.1	MA0031.1	0.156
MA0035.2	MA0035.2	0.0662
MA0038.1	MA0038.1	0.0511
MA0039.2	MA0039.2	0.923
MA0040.1	MA0040.1	0.327
MA0041.1	MA0041.1	0.994
MA0042.1	MA0042.1	0.957
MA0043.1	MA0043.1	0.0864
MA0046.1	MA0046.1	0.235
MA0047.2	MA0047.2	0.409
MA0048.1	MA0048.1	0.466
MA0050.1	MA0050.1	8.79187e-6
MA0051.1	MA0051.1	0.0125
MA0052.1	MA0052.1	2.34547e-4
MA0055.1	MA0055.1	0.879
MA0057.1	MA0057.1	0.92
MA0058.1	MA0058.1	0.548
MA0059.1	MA0059.1	0.319
MA0060.1	MA0060.1	0.231
MA0061.1	MA0061.1	0.0227
MA0062.2	MA0062.2	6.76958e-17
MA0065.2	MA0065.2	0.0108
MA0066.1	MA0066.1	0.237
MA0067.1	MA0067.1	0.63
MA0068.1	MA0068.1	0.0761
MA0069.1	MA0069.1	0.778
MA0070.1	MA0070.1	0.626
MA0071.1	MA0071.1	0.382
MA0072.1	MA0072.1	0.757
MA0073.1	MA0073.1	0.88
MA0074.1	MA0074.1	0.41
MA0076.1	MA0076.1	2.25671e-9
MA0077.1	MA0077.1	0.0557
MA0078.1	MA0078.1	0.736
MA0079.2	MA0079.2	0.48
MA0080.2	MA0080.2	3.29939e-12
MA0081.1	MA0081.1	0.0217
MA0083.1	MA0083.1	0.00674
MA0084.1	MA0084.1	0.823
MA0087.1	MA0087.1	0.376
MA0088.1	MA0088.1	0.0489
MA0090.1	MA0090.1	6.10528e-5
MA0091.1	MA0091.1	0.521
MA0092.1	MA0092.1	0.529
MA0093.1	MA0093.1	0.802
MA0099.2	MA0099.2	0.00344
MA0100.1	MA0100.1	0.476
MA0101.1	MA0101.1	0.819
MA0102.2	MA0102.2	0.329
MA0103.1	MA0103.1	0.0134
MA0104.2	MA0104.2	0.1
MA0105.1	MA0105.1	4.87997e-6
MA0106.1	MA0106.1	0.521
MA0107.1	MA0107.1	0.781
MA0108.2	MA0108.2	1.60731e-16
MA0111.1	MA0111.1	0.0605
MA0112.2	MA0112.2	0.0459
MA0113.1	MA0113.1	0.821
MA0114.1	MA0114.1	0.101
MA0115.1	MA0115.1	0.521
MA0116.1	MA0116.1	1.25873e-5
MA0117.1	MA0117.1	0.642
MA0119.1	MA0119.1	0.558
MA0122.1	MA0122.1	0.643
MA0124.1	MA0124.1	0.978
MA0125.1	MA0125.1	0.392
MA0131.1	MA0131.1	0.564
MA0135.1	MA0135.1	0.125
MA0136.1	MA0136.1	2.23841e-24
MA0137.2	MA0137.2	0.00145
MA0138.2	MA0138.2	0.588
MA0139.1	MA0139.1	0.00947
MA0140.1	MA0140.1	0.106
MA0141.1	MA0141.1	0.335
MA0142.1	MA0142.1	0.765
MA0143.1	MA0143.1	0.393
MA0144.1	MA0144.1	0.0772
MA0145.1	MA0145.1	0.969
MA0146.1	MA0146.1	0.293
MA0147.1	MA0147.1	0.0826
MA0148.1	MA0148.1	0.911
MA0149.1	MA0149.1	0.0652
MA0150.1	MA0150.1	0.514
MA0152.1	MA0152.1	0.00441
MA0153.1	MA0153.1	0.352
MA0154.1	MA0154.1	0.00639
MA0155.1	MA0155.1	0.91
MA0156.1	MA0156.1	1.13269e-19
MA0157.1	MA0157.1	0.0173
MA0159.1	MA0159.1	0.136
MA0160.1	MA0160.1	0.125
MA0162.1	MA0162.1	0.717
MA0163.1	MA0163.1	2.67812e-12
MA0164.1	MA0164.1	0.674
MA0258.1	MA0258.1	0.0524
MA0259.1	MA0259.1	0.301

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs13203

Novel motif	Logo	P-value
1	1	0.106
10	10	0.0225
100	100	0.859
101	101	0.126
102	102	0.599
103	103	0.0278
104	104	0.596
105	105	0.178
106	106	0.654
107	107	0.422
108	108	0.803
109	109	0.0286
11	11	0.0293
110	110	0.402
111	111	0.213
112	112	0.0973
113	113	0.757
114	114	0.0586
115	115	0.142
116	116	0.781
117	117	0.00196
118	118	0.332
119	119	0.587
12	12	0.467
120	120	0.0512
121	121	0.882
122	122	0.17
123	123	0.0327
124	124	0.0321
125	125	0.611
126	126	0.313
127	127	0.246
128	128	0.916
129	129	0.238
13	13	0.414
130	130	0.909
131	131	0.784
132	132	0.927
133	133	0.0452
134	134	0.401
135	135	0.862
136	136	0.936
137	137	0.0717
138	138	0.197
139	139	0.0546
14	14	0.396
140	140	0.0511
141	141	0.417
142	142	0.814
143	143	0.00409
144	144	0.715
145	145	0.265
146	146	0.355
147	147	0.0371
148	148	0.044
149	149	0.755
15	15	0.086
150	150	0.671
151	151	0.486
152	152	0.615
153	153	0.993
154	154	0.898
155	155	0.00811
156	156	0.396
157	157	0.0617
158	158	0.19
159	159	0.287
16	16	0.353
160	160	0.334
161	161	0.126
162	162	0.162
163	163	0.719
164	164	0.139
165	165	0.326
166	166	0.547
167	167	0.208
168	168	0.341
169	169	0.344
17	17	0.83
18	18	0.337
19	19	0.734
2	2	0.875
20	20	0.894
21	21	0.351
22	22	0.797
23	23	0.852
24	24	0.649
25	25	0.116
26	26	0.282
27	27	0.0901
28	28	0.531
29	29	0.0121
3	3	0.0372
30	30	0.315
31	31	0.809
32	32	0.674
33	33	0.303
34	34	0.93
35	35	0.185
36	36	0.0176
37	37	0.134
38	38	0.397
39	39	0.368
4	4	0.775
40	40	0.335
41	41	0.174
42	42	0.0981
43	43	0.304
44	44	0.206
45	45	0.771
46	46	0.0511
47	47	0.00637
48	48	0.0509
49	49	0.156
5	5	0.495
50	50	0.65
51	51	0.466
52	52	0.323
53	53	0.478
54	54	0.553
55	55	0.783
56	56	0.487
57	57	0.317
58	58	0.0817
59	59	0.2
6	6	0.883
60	60	0.424
61	61	0.0727
62	62	0.0388
63	63	0.538
64	64	0.163
65	65	0.622
66	66	0.807
67	67	0.714
68	68	0.525
69	69	0.969
7	7	0.227
70	70	0.0289
71	71	0.0412
72	72	0.014
73	73	0.509
74	74	0.308
75	75	0.0124
76	76	0.349
77	77	0.836
78	78	0.0207
79	79	0.165
8	8	0.547
80	80	0.0511
81	81	0.408
82	82	0.0449
83	83	0.751
84	84	0.255
85	85	0.91
86	86	0.147
87	87	0.346
88	88	0.804
89	89	0.974
9	9	0.568
90	90	0.0224
91	91	0.521
92	92	0.268
93	93	0.127
94	94	0.111
95	95	0.0208
96	96	0.0279
97	97	0.319
98	98	0.0807
99	99	0.069

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs13203

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
EFO:0002091 biological replicate
FF:0000002 in vivo cell sample
FF:0000210 human sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
NA

@@ Line 1: / Line 1: @@
 {{f5samples
-|DRA_sample_Accession=CAGE@DRS008072
+|DRA_sample_Accession=CAGE@SAMD00004706
-|accession_numbers=CAGE;DRX008179;DRR009051;DRZ000476;DRZ001861
+|accession_numbers=CAGE;DRX008179;DRR009051;DRZ000476;DRZ001861;DRZ011826;DRZ013211
 |ancestors_in_anatomy_facet=
 |ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003
@@ Line 9: / Line 9: @@
 |created_by=
 |creation_date=
-|data_phase=1
+|data_phase=2
-|datafreeze_phase=1
+|datafreeze_phase=2
 |def=
 |expression_enrichment_score=chrX:49121165..49121179,-!p1@FOXP3!2.45!283.55!FOXP3;;chr3:18480217..18480239,-!p3@SATB1!1.88!75.23!SATB1;;chr7:50343634..50343717,+!p2@IKZF1!1.79!60.52!IKZF1;;chr2:231090433..231090469,+!p1@SP140!1.68!47.31!SP140;;chr14:75988771..75988826,+!p1@BATF!1.63!55.17!BATF;;chr19:19779619..19779670,+!p1@ZNF101!1.62!111.18!ZNF101;;chr3:18486354..18486377,-!p2@SATB1!1.59!46.65!SATB1;;chr2:192015750..192015793,-!p2@STAT4!1.52!42.47!STAT4;;chrY:21906594..21906622,-!p1@KDM5D!1.52!31.77!KDM5D;;chr6:391743..391759,+!p1@IRF4!1.50!30.76!IRF4;;chr12:56415246..56415286,+!p2@IKZF4!1.50!30.60!IKZF4;;chr4:109087445..109087463,-!p1@LEF1!1.49!29.93!LEF1;;chr6:106546808..106546833,+!p3@PRDM1!1.46!35.28!PRDM1;;chr3:71355163..71355209,-!p5@FOXP1!1.43!35.28!FOXP1;;chr19:19779686..19779697,+!p3@ZNF101!1.43!29.76!ZNF101;;chr12:56415287..56415300,+!p5@IKZF4!1.41!24.91!IKZF4;;chr9:117150254..117150271,-!p1@AKNA!1.40!64.70!AKNA;;chr19:16435625..16435682,+!p1@KLF2!1.39!726.76!KLF2;;chr7:50343895..50343936,+!p5@IKZF1!1.37!22.24!IKZF1;;chr16:88752889..88752921,-!p1@SNAI3!1.35!24.91!SNAI3;;chr3:63953435..63953499,+!p1@ATXN7!1.35!21.23!ATXN7;;chr10:8096631..8096660,+!p1@GATA3!1.33!24.58!GATA3;;chr3:18480173..18480189,-!p6@SATB1!1.27!17.55!SATB1;;chr17:37934365..37934387,-!p2@IKZF3!1.26!17.39!IKZF3;;chr13:41593425..41593480,-!p1@ELF1!1.24!102.49!ELF1;;chr2:231090471..231090504,+!p2@SP140!1.22!15.72!SP140;;chr14:75988831..75988847,+!p2@BATF!1.21!15.38!BATF;;chr6:106546731..106546755,+!p5@PRDM1!1.19!14.55!PRDM1;;chr20:56195474..56195506,-!p1@ZBP1!1.19!14.55!ZBP1;;chr19:19729477..19729542,-!p1@PBX4!1.18!30.09!PBX4;;chr9:20621927..20621996,-!p3@MLLT3!1.18!23.91!MLLT3;;chr17:56565257..56565283,-!p2@HSF5!1.17!13.88!HSF5;;chr16:88752861..88752884,-!p2@SNAI3!1.17!13.71!SNAI3;;chr15:60884706..60884743,-!p1@RORA!1.16!69.88!RORA;;chr21:36421535..36421610,-!p2@RUNX1!1.16!47.82!RUNX1;;chr10:8096772..8096787,+!p2@GATA3!1.15!15.72!GATA3;;chr7:50348268..50348366,+!p4@IKZF1!1.14!12.71!IKZF1;;chr20:50159198..50159299,-!p1@NFATC2!1.13!18.06!NFATC2;;chr4:109088089..109088101,-!p11@LEF1!1.12!12.04!LEF1;;chr11:47236584..47236679,+!p1@DDB2!1.11!128.23!DDB2;;chr16:79634624..79634642,-!p1@MAF!1.10!45.47!MAF;;chr16:79634595..79634620,-!p2@MAF!1.10!21.07!MAF;;chr3:18487057..18487105,-!p4@SATB1!1.10!11.54!SATB1;;chr7:137620650..137620677,-!p3@CREB3L2!1.09!11.37!CREB3L2;;chr7:50344251..50344288,+!p3@IKZF1!1.09!11.20!IKZF1;;chr7:77428066..77428132,+!p2@PHTF2!1.07!69.72!PHTF2;;chr1:25256756..25256774,-!p1@RUNX3!1.07!20.23!RUNX3;;chr3:48282587..48282603,+!p1@ZNF589!1.06!46.81!ZNF589;;chr20:56195525..56195556,-!p2@ZBP1!1.06!10.53!ZBP1;;chr11:128392085..128392232,-!p1@ETS1!1.05!344.40!ETS1;;chr4:109089901..109089930,-!p3@LEF1!1.05!10.20!LEF1;;chr6:106546786..106546802,+!p6@PRDM1!1.04!10.03!PRDM1;;chr9:20620829..20620848,-!p7@MLLT3!1.04!10.03!MLLT3;;chr2:192015701..192015743,-!p1@STAT4!1.02!13.21!STAT4;;chr7:50344144..50344157,+!p6@IKZF1!1.02!9.53!IKZF1;;chr7:50344289..50344323,+!p1@IKZF1!1.02!9.53!IKZF1;;chr2:231090344..231090361,-!p3@SP110!1.01!9.20!SP110;;chr7:64838786..64838809,+!p2@ZNF92!0.99!51.33!ZNF92;;chr4:185395633..185395651,-!p2@IRF2!0.99!14.38!IRF2;;chr4:109088130..109088163,-!p13@LEF1!0.99!8.86!LEF1;;chr6:106546834..106546850,+!p4@PRDM1!0.99!8.86!PRDM1;;chr9:20622444..20622468,-!p2@MLLT3!0.98!28.59!MLLT3;;chr11:128392273..128392308,-!p2@ETS1!0.97!36.45!ETS1;;chr7:21467802..21467840,+!p3@SP4!0.97!17.72!SP4;;chr4:109088940..109089037,-!p4@LEF1!0.97!8.36!LEF1;;chr11:128563948..128564003,+!p1@FLI1!0.96!100.31!FLI1;;chr2:214015343..214015366,-!p3@IKZF2!0.96!8.19!IKZF2;;chr17:38020516..38020544,-!p5@IKZF3!0.95!7.86!IKZF3;;chr16:68119324..68119364,+!p1@NFATC3!0.92!33.77!NFATC3;;chr4:81104895..81104920,+!p2@PRDM8!0.92!11.20!PRDM8;;chr2:231084659..231084721,-!p1@SP110!0.91!174.88!SP110;;chr7:148982396..148982408,+!p4@ZNF783!0.91!7.19!ZNF783;;chr17:45810594..45810608,+!p1@TBX21!0.91!7.19!TBX21;;chr19:36204309..36204335,+!p1@ZBTB32!0.90!7.02!ZBTB32;;chr17:1959369..1959388,+!p2@HIC1!0.89!18.39!HIC1;;chr2:178128250..178128293,-!p6@NFE2L2!0.89!17.72!NFE2L2;;chr8:60031619..60031676,-!p1@TOX!0.89!15.21!TOX;;chr2:214015111..214015179,-!p1@IKZF2!0.89!12.54!IKZF2;;chr2:214013461..214013517,-!p6@IKZF2!0.89!6.69!IKZF2;;chr7:50343864..50343888,+!p7@IKZF1!0.89!6.69!IKZF1;;chr6:15249128..15249177,+!p4@JARID2!0.88!12.20!JARID2;;chr7:137620684..137620711,-!p4@CREB3L2!0.87!6.35!CREB3L2;;chrY:2803415..2803468,+!p1@ZFY!0.87!6.35!ZFY;;chr2:214016254..214016282,-!p7@IKZF2!0.86!6.19!IKZF2;;chr10:35484804..35484902,+!p2@CREM!0.85!24.74!CREM;;chr17:38020392..38020477,-!p1@IKZF3!0.85!6.02!IKZF3;;chr17:38020557..38020572,-!p4@IKZF3!0.84!5.85!IKZF3;;chr2:242556880..242556899,-!p5@THAP4!0.84!5.85!THAP4;;chr21:36421147..36421193,-!p10@RUNX1!0.84!5.85!RUNX1;;chr16:89787937..89787971,+!p1@ZNF276!0.82!15.55!ZNF276;;chr6:91006518..91006570,-!p1@BACH2!0.81!13.21!BACH2;;chr17:46621146..46621180,-!p10@HOXB2!0.81!5.52!HOXB2;;chr9:20622478..20622525,-!p1@MLLT3!0.80!44.97!MLLT3;;chr5:133450365..133450444,+!p1@TCF7!0.80!26.08!TCF7;;chr2:148778973..148779035,+!p3@MBD5!0.79!14.38!MBD5;;chrX:56258844..56258882,+!p1@KLF8!0.79!7.36!KLF8;;chr4:109086281..109086319,-!p9@LEF1!0.79!5.18!LEF1;;chr2:238600933..238600985,+!p3@LRRFIP1!0.78!29.59!LRRFIP1;;chr19:42636586..42636607,-!p1@POU2F2!0.78!15.05!POU2F2;;chr2:97202991..97203043,+!p3@ARID5A!0.78!5.02!ARID5A;;chr11:67007548..67007610,+!p3@KDM2A!0.77!40.12!KDM2A;;chr16:79633894..79633954,-!p3@MAF!0.77!9.86!MAF;;chr2:242556900..242556916,-!p6@THAP4!0.77!4.85!THAP4;;chrX:56258900..56258917,+!p4@KLF8!0.77!4.85!KLF8;;chr13:41240717..41240735,-!p2@FOXO1!0.76!35.78!FOXO1;;chr8:42698194..42698239,-!p2@THAP1!0.76!23.57!THAP1;;chr3:5020939..5020952,+!p2@BHLHE40!0.76!16.05!BHLHE40;;chr14:90085458..90085557,-!p1@FOXN3!0.75!53.00!FOXN3;;chr3:71179699..71179744,-!p2@FOXP1!0.75!38.29!FOXP1;;chr6:29648890..29648944,-!p1@ZFP57!0.75!4.68!ZFP57;;chr10:63661437..63661465,+!p2@ARID5B!0.74!96.30!ARID5B;;chr19:52674696..52674758,-!p1@ZNF836!0.74!14.38!ZNF836;;chr17:37934204..37934241,-!p3@IKZF3!0.74!4.51!IKZF3;;chr17:37934280..37934299,-!p6@IKZF3!0.74!4.51!IKZF3;;chr4:38665769..38665801,+!p2@KLF3!0.73!44.64!KLF3;;chr20:46130672..46130686,+!p2@NCOA3!0.73!21.40!NCOA3;;chrX:134477924..134477988,-!p1@ZNF75D!0.73!18.06!ZNF75D;;chr10:35416142..35416169,+!p3@CREM!0.73!12.71!CREM;;chr2:214016496..214016544,-!p5@IKZF2!0.73!6.35!IKZF2;;chr4:109090075..109090095,-!p2@LEF1!0.73!4.35!LEF1;;chr15:31619326..31619390,+!p2@KLF13!0.72!54.50!KLF13;;chr19:9546177..9546224,-!p1@ZNF266!0.72!33.77!ZNF266;;chr19:9546227..9546257,-!p2@ZNF266!0.72!24.24!ZNF266;;chr7:21467674..21467727,+!p1@SP4!0.72!18.72!SP4;;chr19:38085768..38085821,+!p1@ZNF540!0.72!6.69!ZNF540;;chr1:154975110..154975149,+!p2@ZBTB7B!0.71!9.36!ZBTB7B;;chr3:71353892..71353928,-!p31@FOXP1!0.71!4.18!FOXP1;;chr4:109089996..109090012,-!p5@LEF1!0.71!4.18!LEF1;;chr6:106547079..106547114,+!p9@PRDM1!0.71!4.18!PRDM1;;chr1:158979686..158979745,+!p1@IFI16!0.70!150.64!IFI16;;chr17:36861675..36861697,+!p3@MLLT6!0.70!10.37!MLLT6;;chr2:231191875..231191918,+!p1@SP140L!0.69!43.64!SP140L;;chr19:12444440..12444455,-!p1@ZNF563!0.69!7.19!ZNF563;;chrY:21906761..21906810,-!p2@KDM5D!0.69!3.85!KDM5D;;chr17:40440481..40440550,+!p1@STAT5A!0.68!31.10!STAT5A;;chr16:67063142..67063153,+!p4@CBFB!0.68!5.85!CBFB;;chr19:49140609..49140643,-!p1@DBP!0.67!23.57!DBP;;chr14:65569101..65569119,-!p3@MAX!0.67!13.21!MAX;;chr1:44679370..44679422,+!p3@DMAP1!0.67!5.02!DMAP1;;chr13:41593493..41593506,-!p8@ELF1!0.67!3.68!ELF1;;chr13:41240737..41240787,-!p1@FOXO1!0.66!49.15!FOXO1;;chr3:18466787..18466839,-!p1@SATB1!0.66!18.22!SATB1;;chr10:35484053..35484076,+!p1@CREM!0.66!10.03!CREM;;chr1:23857698..23857733,-!p1@E2F2!0.66!7.19!E2F2;;chr10:8095593..8095625,+!p3@GATA3!0.66!4.35!GATA3;;chr4:38665810..38665827,+!p1@KLF3!0.64!57.85!KLF3;;chr9:3525867..3525902,-!p3@RFX3!0.64!13.21!RFX3;;chr4:185395590..185395627,-!p3@IRF2!0.64!4.35!IRF2;;chr4:109089573..109089585,-!p8@LEF1!0.64!3.34!LEF1;;chr10:104154246..104154347,+!p3@NFKB2!0.63!23.41!NFKB2;;chr7:21467746..21467758,+!p4@SP4!0.63!4.85!SP4;;chr6:126102292..126102329,+!p3@NCOA7!0.62!12.04!NCOA7;;chr19:22235279..22235301,+!p1@ZNF257!0.62!6.69!ZNF257;;chr17:36861735..36861755,+!p4@MLLT6!0.62!5.85!MLLT6;;chr20:44600199..44600219,-!p3@ZNF335!0.62!4.51!ZNF335;;chr7:64838754..64838778,+!p1@ZNF92!0.61!35.28!ZNF92;;chr5:172483347..172483407,+!p1@C5orf41!0.61!27.75!CREBRF;;chr19:21512202..21512225,-!p1@ZNF708!0.61!18.56!ZNF708;;chr1:14026671..14026705,+!p2@PRDM2!0.60!21.73!PRDM2;;chr2:178128199..178128245,-!p3@NFE2L2!0.60!18.89!NFE2L2;;chr19:53836985..53837024,+!p1@ZNF845!0.60!17.55!ZNF845;;chr7:99156393..99156433,+!p6@ZNF655!0.60!7.52!ZNF655;;chr18:5295679..5295734,-!p2@ZFP161!0.60!7.36!ZFP161;;chr3:178789993..178790049,-!p5@ZMAT3!0.60!4.68!ZMAT3;;chr19:49140595..49140607,-!p3@DBP!0.60!4.51!DBP;;chr4:81104865..81104886,+!p6@PRDM8!0.60!3.34!PRDM8;;chr12:56418637..56418648,+!p9@IKZF4!0.60!3.01!IKZF4;;chr9:20621834..20621884,-!p5@MLLT3!0.60!3.01!MLLT3;;chr16:79634581..79634592,-!p4@MAF!0.60!3.01!MAF;;chr16:88752836..88752852,-!p3@SNAI3!0.60!3.01!SNAI3;;chr17:38020481..38020506,-!p7@IKZF3!0.60!3.01!IKZF3;;chr6:106534192..106534224,+!p1@PRDM1!0.59!9.36!PRDM1;;chr19:35455110..35455149,-!p1@ZNF792!0.59!6.35!ZNF792;;chr8:71316428..71316459,-!p2@NCOA2!0.59!5.35!NCOA2;;chr3:18466660..18466676,-!p5@SATB1!0.59!3.51!SATB1;;chr5:131826457..131826514,-!p1@IRF1!0.58!135.42!IRF1;;chr14:24630465..24630531,+!p1@IRF9!0.58!132.91!IRF9;;chr7:139762641..139762768,-!p1@PARP12!0.58!47.31!PARP12;;chr14:64971288..64971316,-!p2@ZBTB25!0.58!10.03!ZBTB25;;chr19:53868940..53868990,+!p1@ZNF525,p2@ZNF765!0.58!9.36!ZNF525;;chr12:46123273..46123329,+!p3@ARID2!0.58!5.35!ARID2;;chr11:47236489..47236567,+!p2@DDB2!0.57!45.81!DDB2;;chr17:61920280..61920343,-!p2@SMARCD2!0.57!32.43!SMARCD2;;chr6:143266297..143266356,-!p1@HIVEP2!0.57!15.72!HIVEP2;;chr19:53073532..53073551,+!p1@ZNF701!0.57!14.88!ZNF701;;chr9:97021572..97021615,+!p1@ZNF169!0.57!8.19!ZNF169;;chr4:87857433..87857472,+!p9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+|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000084;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000542;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000624;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000738;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000789;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000893;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000988
 |fonse_cell_line=
 |fonse_cell_line_closure=
@@ Line 40: / Line 41: @@
 |fonse_treatment_closure=EFO:0000369,FF:0000409,FF:0011456,FF:11793-124C2
 |has_quality=
+|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/CD4%252bCD25%252bCD45RA%252b%2520naive%2520regulatory%2520T%2520cells%2520expanded%252c%2520donor1.CNhs13203.11793-124C2.hg19.nobarcode.bam
+|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/CD4%252bCD25%252bCD45RA%252b%2520naive%2520regulatory%2520T%2520cells%2520expanded%252c%2520donor1.CNhs13203.11793-124C2.hg19.ctss.bed.gz
+|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/CD4%252bCD25%252bCD45RA%252b%2520naive%2520regulatory%2520T%2520cells%2520expanded%252c%2520donor1.CNhs13203.11793-124C2.hg19.nobarcode.rdna.fa.gz
+|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/CD4%252bCD25%252bCD45RA%252b%2520naive%2520regulatory%2520T%2520cells%2520expanded%252c%2520donor1.CNhs13203.11793-124C2.hg38.nobarcode.bam
+|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/CD4%252bCD25%252bCD45RA%252b%2520naive%2520regulatory%2520T%2520cells%2520expanded%252c%2520donor1.CNhs13203.11793-124C2.hg38.nobarcode.ctss.bed.gz
 |id=FF:11793-124C2
 |is_a=EFO:0002091;;FF:0000002;;FF:0000210
 |is_obsolete=
 |library_id=CNhs13203
-|library_id_phase_based=1:CNhs13203
+|library_id_phase_based=2:CNhs13203
+|microRNAs=
+|microRNAs_nn=
+|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11793
+|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11793
 |name=CD4+CD25+CD45RA+ naive regulatory T cells expanded, donor1
 |namespace=
@@ Line 50: / Line 60: @@
 |profile_cagescan=,,,
 |profile_hcage=CNhs13203,LSID1004,release012,COMPLETED
-|profile_rnaseq=,,,
+|profile_rnaseq=
 |profile_srnaseq=,,,
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+|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11793-124C2;search_select_hide=table117:FF:11793-124C2
 }}

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FF:11793-124C2: Difference between revisions

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Latest revision as of 18:20, 4 June 2020

	FAQ
	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0