FF:11793-124C2: Difference between revisions
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{{f5samples | {{f5samples | ||
|ancestors_in_anatomy_facet= | |DRA_sample_Accession=CAGE@SAMD00004706 | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003 | |accession_numbers=CAGE;DRX008179;DRR009051;DRZ000476;DRZ001861;DRZ011826;DRZ013211 | ||
|ancestors_in_anatomy_facet= | |||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003 | |||
|ancestors_in_disease_facet= | |ancestors_in_disease_facet= | ||
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000001 | |||
|comment=Previously: CD4-positiveCD25-positiveCD45RA+ memory regulatory T cells expanded, donor1. TODO: full classification | |comment=Previously: CD4-positiveCD25-positiveCD45RA+ memory regulatory T cells expanded, donor1. TODO: full classification | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|data_phase=2 | |||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score | |||
|fonse_cell_line= | |fonse_cell_line= | ||
|fonse_cell_line_closure= | |fonse_cell_line_closure= | ||
| Line 35: | Line 41: | ||
|fonse_treatment_closure=EFO:0000369,FF:0000409,FF:0011456,FF:11793-124C2 | |fonse_treatment_closure=EFO:0000369,FF:0000409,FF:0011456,FF:11793-124C2 | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/CD4%252bCD25%252bCD45RA%252b%2520naive%2520regulatory%2520T%2520cells%2520expanded%252c%2520donor1.CNhs13203.11793-124C2.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/CD4%252bCD25%252bCD45RA%252b%2520naive%2520regulatory%2520T%2520cells%2520expanded%252c%2520donor1.CNhs13203.11793-124C2.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/CD4%252bCD25%252bCD45RA%252b%2520naive%2520regulatory%2520T%2520cells%2520expanded%252c%2520donor1.CNhs13203.11793-124C2.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/CD4%252bCD25%252bCD45RA%252b%2520naive%2520regulatory%2520T%2520cells%2520expanded%252c%2520donor1.CNhs13203.11793-124C2.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/CD4%252bCD25%252bCD45RA%252b%2520naive%2520regulatory%2520T%2520cells%2520expanded%252c%2520donor1.CNhs13203.11793-124C2.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:11793-124C2 | |id=FF:11793-124C2 | ||
|is_a=EFO:0002091;;FF:0000002;;FF:0000210 | |is_a=EFO:0002091;;FF:0000002;;FF:0000210 | ||
|is_obsolete= | |||
|library_id=CNhs13203 | |||
|library_id_phase_based=2:CNhs13203 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11793 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11793 | |||
|name=CD4+CD25+CD45RA+ naive regulatory T cells expanded, donor1 | |name=CD4+CD25+CD45RA+ naive regulatory T cells expanded, donor1 | ||
|namespace= | |namespace= | ||
| Line 42: | Line 60: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs13203,LSID1004,release012,COMPLETED | |profile_hcage=CNhs13203,LSID1004,release012,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=,,, | |profile_srnaseq=,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
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| |||
|rna_box=124 | |rna_box=124 | ||
|rna_catalog_number= | |rna_catalog_number= | ||
| Line 57: | Line 78: | ||
|rna_weight_ug=1.8264 | |rna_weight_ug=1.8264 | ||
|sample_age=25 | |sample_age=25 | ||
|sample_category=primary cells | |||
|sample_cell_catalog= | |sample_cell_catalog= | ||
|sample_cell_line= | |sample_cell_line= | ||
| Line 69: | Line 91: | ||
|sample_ethnicity= | |sample_ethnicity= | ||
|sample_experimental_condition= | |sample_experimental_condition= | ||
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;1.59097422638356e-233!GO:0043227;membrane-bound organelle;1.14812841538258e-200!GO:0043231;intracellular membrane-bound organelle;3.23806765993636e-200!GO:0043226;organelle;9.30396819171964e-190!GO:0043229;intracellular organelle;5.08441955793678e-189!GO:0005737;cytoplasm;1.23684435481618e-145!GO:0044422;organelle part;8.24476166919223e-125!GO:0044446;intracellular organelle part;4.72105690281009e-123!GO:0044444;cytoplasmic part;8.36201140052094e-102!GO:0005634;nucleus;8.36201140052094e-102!GO:0032991;macromolecular complex;1.29075419565542e-101!GO:0044237;cellular metabolic process;5.40458440656459e-101!GO:0043170;macromolecule metabolic process;1.30511834856137e-98!GO:0044238;primary metabolic process;1.37772099096184e-96!GO:0030529;ribonucleoprotein complex;7.01100994468121e-91!GO:0003723;RNA binding;2.87320938181893e-83!GO:0044428;nuclear part;5.77663694710505e-80!GO:0043233;organelle lumen;1.34537369684368e-70!GO:0031974;membrane-enclosed lumen;1.34537369684368e-70!GO:0043283;biopolymer metabolic process;3.52241448610923e-64!GO:0005739;mitochondrion;2.1333520952126e-62!GO:0006396;RNA processing;4.65688191078445e-58!GO:0010467;gene expression;7.0056138252286e-58!GO:0006412;translation;9.93461295791961e-57!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;1.01265942411534e-55!GO:0005515;protein binding;2.4521676006853e-52!GO:0005840;ribosome;1.04087284008983e-50!GO:0019538;protein metabolic process;2.50437079428532e-50!GO:0043234;protein complex;4.834926258604e-50!GO:0033036;macromolecule localization;3.8832449512101e-48!GO:0016071;mRNA metabolic process;4.09281317704355e-48!GO:0031981;nuclear lumen;5.1067161883547e-48!GO:0044267;cellular protein metabolic process;1.28211176609256e-47!GO:0044260;cellular macromolecule metabolic process;1.72041435933502e-46!GO:0015031;protein transport;1.73624379996381e-46!GO:0003735;structural constituent of ribosome;5.95636012262247e-45!GO:0045184;establishment of protein localization;1.02550537761915e-44!GO:0044429;mitochondrial part;2.20841537012838e-44!GO:0008104;protein localization;3.76460776528252e-44!GO:0009059;macromolecule biosynthetic process;1.34689918595987e-42!GO:0008380;RNA splicing;1.24951974911945e-41!GO:0006397;mRNA processing;1.73524923461836e-41!GO:0031967;organelle envelope;3.40334290062211e-41!GO:0031975;envelope;7.77624404596607e-41!GO:0031090;organelle membrane;1.58277222509299e-40!GO:0003676;nucleic acid binding;1.65718502097044e-40!GO:0033279;ribosomal subunit;1.21233604653392e-38!GO:0022613;ribonucleoprotein complex biogenesis and assembly;1.62414014277609e-35!GO:0005829;cytosol;2.01840519159356e-35!GO:0044249;cellular biosynthetic process;2.01840519159356e-35!GO:0006259;DNA metabolic process;2.01840519159356e-35!GO:0009058;biosynthetic process;8.24499425796064e-35!GO:0046907;intracellular transport;1.41016339418181e-32!GO:0016043;cellular component organization and biogenesis;7.11062244655307e-32!GO:0006886;intracellular protein transport;4.55575266887053e-31!GO:0005681;spliceosome;6.71833674704576e-31!GO:0065003;macromolecular complex assembly;2.76734041104295e-30!GO:0005654;nucleoplasm;5.86291345755948e-30!GO:0016070;RNA metabolic process;1.0787121575777e-29!GO:0005830;cytosolic ribosome (sensu Eukaryota);2.19809412473222e-29!GO:0005740;mitochondrial envelope;1.43019121236935e-28!GO:0031966;mitochondrial membrane;3.74128671256697e-27!GO:0006996;organelle organization and biogenesis;3.74128671256697e-27!GO:0019866;organelle inner membrane;5.79205433038815e-27!GO:0022607;cellular component assembly;8.40356475132925e-27!GO:0044445;cytosolic part;1.01038659475882e-26!GO:0000166;nucleotide binding;1.57770394746862e-26!GO:0005743;mitochondrial inner membrane;1.20521071823197e-24!GO:0006512;ubiquitin cycle;4.538342461371e-23!GO:0043228;non-membrane-bound organelle;4.63244212922205e-23!GO:0043232;intracellular non-membrane-bound organelle;4.63244212922205e-23!GO:0051641;cellular localization;1.10472785313582e-22!GO:0022618;protein-RNA complex assembly;1.44128278976336e-22!GO:0051649;establishment of cellular localization;2.02994114915569e-22!GO:0044451;nucleoplasm part;2.14674742414491e-22!GO:0006974;response to DNA damage stimulus;1.04958937609479e-21!GO:0006119;oxidative phosphorylation;1.28106748502879e-21!GO:0016874;ligase activity;5.42624666825912e-21!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;1.88306269121178e-20!GO:0016462;pyrophosphatase activity;2.03783849886714e-20!GO:0016817;hydrolase activity, acting on acid anhydrides;2.10596511166074e-20!GO:0044265;cellular macromolecule catabolic process;3.68951168297989e-20!GO:0044455;mitochondrial membrane part;3.88689385513355e-20!GO:0015935;small ribosomal subunit;4.48389023313259e-20!GO:0017111;nucleoside-triphosphatase activity;4.48389023313259e-20!GO:0006915;apoptosis;6.79098703898137e-20!GO:0012501;programmed cell death;6.79098703898137e-20!GO:0005730;nucleolus;9.58067468633354e-20!GO:0015934;large ribosomal subunit;1.63137206559246e-19!GO:0031980;mitochondrial lumen;2.56229417567349e-19!GO:0005759;mitochondrial matrix;2.56229417567349e-19!GO:0032553;ribonucleotide binding;5.8407095156683e-19!GO:0032555;purine ribonucleotide binding;5.8407095156683e-19!GO:0008219;cell death;6.18141736174518e-19!GO:0016265;death;6.18141736174518e-19!GO:0007049;cell cycle;8.81419261807303e-19!GO:0017076;purine nucleotide binding;1.21427619355477e-18!GO:0006281;DNA repair;1.58946909058666e-18!GO:0043412;biopolymer modification;1.35813062171519e-17!GO:0008135;translation factor activity, nucleic acid binding;1.70026638600096e-17!GO:0051276;chromosome organization and biogenesis;1.73430091378782e-17!GO:0051603;proteolysis involved in cellular protein catabolic process;1.89678515122764e-17!GO:0019941;modification-dependent protein catabolic process;2.24952544542864e-17!GO:0043632;modification-dependent macromolecule catabolic process;2.24952544542864e-17!GO:0005524;ATP binding;3.51085635713772e-17!GO:0043285;biopolymer catabolic process;3.63999219066757e-17!GO:0006511;ubiquitin-dependent protein catabolic process;4.09752004316427e-17!GO:0044257;cellular protein catabolic process;4.58570035328673e-17!GO:0016604;nuclear body;8.40553123701288e-17!GO:0005694;chromosome;1.3007155688916e-16!GO:0009057;macromolecule catabolic process;1.45376607685185e-16!GO:0000502;proteasome complex (sensu Eukaryota);1.7349450992276e-16!GO:0032559;adenyl ribonucleotide binding;2.34032471990901e-16!GO:0006457;protein folding;2.34032471990901e-16!GO:0016887;ATPase activity;3.53372420573338e-16!GO:0042623;ATPase activity, coupled;3.85912295722605e-16!GO:0006605;protein targeting;5.10529802368063e-16!GO:0030554;adenyl nucleotide binding;6.62355834446597e-16!GO:0005746;mitochondrial respiratory chain;7.12359338723524e-16!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);1.46366184571732e-15!GO:0006325;establishment and/or maintenance of chromatin architecture;1.89181060136285e-15!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;2.47014444677168e-15!GO:0006464;protein modification process;4.29685085500634e-15!GO:0006323;DNA packaging;4.98620271057462e-15!GO:0022402;cell cycle process;5.28418596763849e-15!GO:0000398;nuclear mRNA splicing, via spliceosome;7.00986448057635e-15!GO:0000375;RNA splicing, via transesterification reactions;7.00986448057635e-15!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;7.00986448057635e-15!GO:0006413;translational initiation;1.02599341980144e-14!GO:0044427;chromosomal part;1.03135446561217e-14!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);1.11263755740994e-14!GO:0012505;endomembrane system;1.38127718959537e-14!GO:0050136;NADH dehydrogenase (quinone) activity;1.42559198936563e-14!GO:0003954;NADH dehydrogenase activity;1.42559198936563e-14!GO:0008137;NADH dehydrogenase (ubiquinone) activity;1.42559198936563e-14!GO:0003743;translation initiation factor activity;2.66184275233425e-14!GO:0008134;transcription factor binding;4.13840681016544e-14!GO:0042981;regulation of apoptosis;4.82330920563866e-14!GO:0044248;cellular catabolic process;4.97598122110197e-14!GO:0006913;nucleocytoplasmic transport;5.94518083409196e-14!GO:0043067;regulation of programmed cell death;7.8980812365521e-14!GO:0042254;ribosome biogenesis and assembly;8.64500059299621e-14!GO:0051169;nuclear transport;1.02142772748919e-13!GO:0016607;nuclear speck;1.29788151164191e-13!GO:0005635;nuclear envelope;1.62502460508937e-13!GO:0043687;post-translational protein modification;1.64922229507816e-13!GO:0030163;protein catabolic process;2.4241497148376e-13!GO:0005761;mitochondrial ribosome;3.08947412385411e-13!GO:0000313;organellar ribosome;3.08947412385411e-13!GO:0042775;organelle ATP synthesis coupled electron transport;4.43239102348156e-13!GO:0042773;ATP synthesis coupled electron transport;4.43239102348156e-13!GO:0004386;helicase activity;4.76949183720428e-13!GO:0031965;nuclear membrane;5.40311155135284e-13!GO:0009719;response to endogenous stimulus;1.14885141198038e-12!GO:0030964;NADH dehydrogenase complex (quinone);1.20855818693725e-12!GO:0045271;respiratory chain complex I;1.20855818693725e-12!GO:0005747;mitochondrial respiratory chain complex I;1.20855818693725e-12!GO:0006446;regulation of translational initiation;1.80443981045181e-12!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;3.63172640645934e-12!GO:0048770;pigment granule;5.10085300676345e-12!GO:0042470;melanosome;5.10085300676345e-12!GO:0008026;ATP-dependent helicase activity;5.80677188635462e-12!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;1.21007049277479e-11!GO:0051082;unfolded protein binding;2.35702635475628e-11!GO:0050794;regulation of cellular process;2.684446800965e-11!GO:0044453;nuclear membrane part;2.7355631153386e-11!GO:0016568;chromatin modification;4.84335235161151e-11!GO:0051726;regulation of cell cycle;6.31217587692102e-11!GO:0048193;Golgi vesicle transport;7.18424775520499e-11!GO:0051186;cofactor metabolic process;1.00355310506491e-10!GO:0000074;regulation of progression through cell cycle;1.07644861750782e-10!GO:0006399;tRNA metabolic process;1.31611319600228e-10!GO:0008639;small protein conjugating enzyme activity;1.39901593289352e-10!GO:0000785;chromatin;1.45486711940701e-10!GO:0019787;small conjugating protein ligase activity;2.51674791212841e-10!GO:0004842;ubiquitin-protein ligase activity;2.78036995257391e-10!GO:0050657;nucleic acid transport;2.81119101289109e-10!GO:0051236;establishment of RNA localization;2.81119101289109e-10!GO:0050658;RNA transport;2.81119101289109e-10!GO:0006403;RNA localization;2.95378927933976e-10!GO:0000278;mitotic cell cycle;2.96210851845797e-10!GO:0006333;chromatin assembly or disassembly;3.12583873928272e-10!GO:0016879;ligase activity, forming carbon-nitrogen bonds;4.97435044725976e-10!GO:0016787;hydrolase activity;5.09749357679775e-10!GO:0065004;protein-DNA complex assembly;5.4209789898983e-10!GO:0005643;nuclear pore;5.5297631280416e-10!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;6.8132462506233e-10!GO:0005794;Golgi apparatus;1.33394201136235e-09!GO:0019829;cation-transporting ATPase activity;1.34027334998371e-09!GO:0009259;ribonucleotide metabolic process;1.55821202202654e-09!GO:0065002;intracellular protein transport across a membrane;1.93666378401472e-09!GO:0006260;DNA replication;2.00285082753701e-09!GO:0017038;protein import;2.1477668777522e-09!GO:0043566;structure-specific DNA binding;2.78164450714771e-09!GO:0008565;protein transporter activity;2.80109250747239e-09!GO:0007249;I-kappaB kinase/NF-kappaB cascade;3.56249920941756e-09!GO:0006793;phosphorus metabolic process;3.56249920941756e-09!GO:0006796;phosphate metabolic process;3.56249920941756e-09!GO:0016072;rRNA metabolic process;3.60076386339026e-09!GO:0006164;purine nucleotide biosynthetic process;4.16340355088773e-09!GO:0006364;rRNA processing;4.30688796009876e-09!GO:0016779;nucleotidyltransferase activity;5.0358703843954e-09!GO:0009260;ribonucleotide biosynthetic process;5.05189578709088e-09!GO:0006163;purine nucleotide metabolic process;5.20860848725254e-09!GO:0019222;regulation of metabolic process;5.55710671393088e-09!GO:0016881;acid-amino acid ligase activity;6.42197527181467e-09!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;1.01879190213625e-08!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;1.20602328458617e-08!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;1.22159888021331e-08!GO:0015078;hydrogen ion transmembrane transporter activity;1.26166870089959e-08!GO:0051028;mRNA transport;1.36158025150825e-08!GO:0005839;proteasome core complex (sensu Eukaryota);1.3661651253217e-08!GO:0003712;transcription cofactor activity;1.36760193362152e-08!GO:0009152;purine ribonucleotide biosynthetic process;1.54688868292418e-08!GO:0046930;pore complex;1.58136833729352e-08!GO:0005768;endosome;1.59170714673909e-08!GO:0006732;coenzyme metabolic process;1.80694380642094e-08!GO:0009150;purine ribonucleotide metabolic process;2.00061914560139e-08!GO:0030532;small nuclear ribonucleoprotein complex;2.10734818959123e-08!GO:0051246;regulation of protein metabolic process;2.4431490143847e-08!GO:0022403;cell cycle phase;2.52309112098184e-08!GO:0009055;electron carrier activity;2.94709705520007e-08!GO:0003697;single-stranded DNA binding;3.26059984294217e-08!GO:0016192;vesicle-mediated transport;3.91244825895603e-08!GO:0015986;ATP synthesis coupled proton transport;4.77874654000163e-08!GO:0015985;energy coupled proton transport, down electrochemical gradient;4.77874654000163e-08!GO:0044432;endoplasmic reticulum part;4.78286543360341e-08!GO:0000087;M phase of mitotic cell cycle;4.88348916148325e-08!GO:0004298;threonine endopeptidase activity;5.23182597921709e-08!GO:0016310;phosphorylation;5.24572363714727e-08!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;7.72858224098491e-08!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;7.84045489835204e-08!GO:0004812;aminoacyl-tRNA ligase activity;7.84045489835204e-08!GO:0016875;ligase activity, forming carbon-oxygen bonds;7.84045489835204e-08!GO:0007067;mitosis;8.11058564031863e-08!GO:0016740;transferase activity;8.25622188812633e-08!GO:0005783;endoplasmic reticulum;9.88898969480133e-08!GO:0043038;amino acid activation;1.11182500132489e-07!GO:0006418;tRNA aminoacylation for protein translation;1.11182500132489e-07!GO:0043039;tRNA aminoacylation;1.11182500132489e-07!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;1.22155532884659e-07!GO:0009056;catabolic process;1.46421683961838e-07!GO:0007005;mitochondrion organization and biogenesis;1.8255696327625e-07!GO:0043069;negative regulation of programmed cell death;2.79591767018105e-07!GO:0031323;regulation of cellular metabolic process;2.79591767018105e-07!GO:0032446;protein modification by small protein conjugation;3.04741969017516e-07!GO:0006754;ATP biosynthetic process;3.24344321137784e-07!GO:0006753;nucleoside phosphate metabolic process;3.24344321137784e-07!GO:0009060;aerobic respiration;3.25212261190952e-07!GO:0016469;proton-transporting two-sector ATPase complex;3.58012369382968e-07!GO:0000245;spliceosome assembly;3.88484541651457e-07!GO:0009142;nucleoside triphosphate biosynthetic process;3.92121466387288e-07!GO:0009201;ribonucleoside triphosphate biosynthetic process;3.92121466387288e-07!GO:0043066;negative regulation of apoptosis;3.95463604475254e-07!GO:0006916;anti-apoptosis;4.30346146051559e-07!GO:0050789;regulation of biological process;5.16549512934899e-07!GO:0065009;regulation of a molecular function;6.11378957965352e-07!GO:0051188;cofactor biosynthetic process;6.48166320499651e-07!GO:0031497;chromatin assembly;6.48166320499651e-07!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;6.48166320499651e-07!GO:0009145;purine nucleoside triphosphate biosynthetic process;6.48166320499651e-07!GO:0006334;nucleosome assembly;6.59535292943563e-07!GO:0006917;induction of apoptosis;6.64204129911758e-07!GO:0042175;nuclear envelope-endoplasmic reticulum network;7.14136141831215e-07!GO:0005789;endoplasmic reticulum membrane;7.51378922501154e-07!GO:0009199;ribonucleoside triphosphate metabolic process;8.31753294220569e-07!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;8.73524120537088e-07!GO:0015399;primary active transmembrane transporter activity;8.73524120537088e-07!GO:0016567;protein ubiquitination;9.63565769876557e-07!GO:0006888;ER to Golgi vesicle-mediated transport;1.05547180389266e-06!GO:0012502;induction of programmed cell death;1.05547180389266e-06!GO:0009141;nucleoside triphosphate metabolic process;1.07010944782563e-06!GO:0051170;nuclear import;1.1079417528022e-06!GO:0046034;ATP metabolic process;1.17815200403478e-06!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;1.23977575479297e-06!GO:0030120;vesicle coat;1.26572187545914e-06!GO:0030662;coated vesicle membrane;1.26572187545914e-06!GO:0009205;purine ribonucleoside triphosphate metabolic process;1.33081232350246e-06!GO:0009144;purine nucleoside triphosphate metabolic process;1.33081232350246e-06!GO:0007243;protein kinase cascade;1.39817455924564e-06!GO:0015077;monovalent inorganic cation transmembrane transporter activity;1.3982213496998e-06!GO:0016772;transferase activity, transferring phosphorus-containing groups;1.40448416091746e-06!GO:0019899;enzyme binding;1.55841219921323e-06!GO:0000279;M phase;1.62150258229956e-06!GO:0051301;cell division;1.79868075903968e-06!GO:0003724;RNA helicase activity;1.80337059684572e-06!GO:0045333;cellular respiration;2.01610155082638e-06!GO:0006606;protein import into nucleus;2.01633103547835e-06!GO:0003713;transcription coactivator activity;2.03866791762394e-06!GO:0051168;nuclear export;2.20731479179352e-06!GO:0045786;negative regulation of progression through cell cycle;2.29181137776278e-06!GO:0008270;zinc ion binding;2.3589353649179e-06!GO:0045259;proton-transporting ATP synthase complex;2.4236408048906e-06!GO:0031202;RNA splicing factor activity, transesterification mechanism;2.46682497474023e-06!GO:0048475;coated membrane;2.4770443939119e-06!GO:0030117;membrane coat;2.4770443939119e-06!GO:0043065;positive regulation of apoptosis;2.77708116260158e-06!GO:0006350;transcription;2.80962325591937e-06!GO:0000151;ubiquitin ligase complex;3.8015491082903e-06!GO:0043068;positive regulation of programmed cell death;4.2579540361467e-06!GO:0006613;cotranslational protein targeting to membrane;5.1383005378763e-06!GO:0008632;apoptotic program;5.52689349604616e-06!GO:0006461;protein complex assembly;7.72162416392646e-06!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;9.66092206084022e-06!GO:0006752;group transfer coenzyme metabolic process;1.16368864021811e-05!GO:0006099;tricarboxylic acid cycle;1.42986001188825e-05!GO:0046356;acetyl-CoA catabolic process;1.42986001188825e-05!GO:0006401;RNA catabolic process;1.63644534772348e-05!GO:0010468;regulation of gene expression;1.640414646023e-05!GO:0005813;centrosome;1.82943444169313e-05!GO:0005773;vacuole;1.88871983978565e-05!GO:0048523;negative regulation of cellular process;2.15339010448e-05!GO:0016563;transcription activator activity;2.23430832175824e-05!GO:0006261;DNA-dependent DNA replication;2.44219552876227e-05!GO:0003899;DNA-directed RNA polymerase activity;2.54843865123679e-05!GO:0006084;acetyl-CoA metabolic process;2.68014452909382e-05!GO:0009108;coenzyme biosynthetic process;2.68014452909382e-05!GO:0043492;ATPase activity, coupled to movement of substances;2.87494020381138e-05!GO:0005793;ER-Golgi intermediate compartment;2.95790449117564e-05!GO:0000786;nucleosome;3.20853201378275e-05!GO:0006310;DNA recombination;3.4150086844584e-05!GO:0005815;microtubule organizing center;3.4150086844584e-05!GO:0006612;protein targeting to membrane;3.46723446085267e-05!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;3.46723446085267e-05!GO:0008234;cysteine-type peptidase activity;3.50725880992977e-05!GO:0006366;transcription from RNA polymerase II promoter;3.77018594154884e-05!GO:0000323;lytic vacuole;3.77018594154884e-05!GO:0005764;lysosome;3.77018594154884e-05!GO:0003690;double-stranded DNA binding;3.84259649157954e-05!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;4.01201593885452e-05!GO:0005852;eukaryotic translation initiation factor 3 complex;4.22266079858047e-05!GO:0006417;regulation of translation;4.27223668032879e-05!GO:0005762;mitochondrial large ribosomal subunit;4.33548422664564e-05!GO:0000315;organellar large ribosomal subunit;4.33548422664564e-05!GO:0008186;RNA-dependent ATPase activity;5.18703564484846e-05!GO:0019219;regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;5.34317265282245e-05!GO:0006818;hydrogen transport;6.18870222468171e-05!GO:0015992;proton transport;6.25889748982113e-05!GO:0006402;mRNA catabolic process;6.42811552731654e-05!GO:0016363;nuclear matrix;7.77541756080664e-05!GO:0031324;negative regulation of cellular metabolic process;9.81469596064432e-05!GO:0009109;coenzyme catabolic process;0.000102042525267124!GO:0044431;Golgi apparatus part;0.000105539067892613!GO:0009117;nucleotide metabolic process;0.000105955845305999!GO:0005770;late endosome;0.000124201598799445!GO:0005798;Golgi-associated vesicle;0.000125118627187009!GO:0030384;phosphoinositide metabolic process;0.000125754636876777!GO:0044440;endosomal part;0.000128223657633842!GO:0010008;endosome membrane;0.000128223657633842!GO:0003729;mRNA binding;0.000128223657633842!GO:0051427;hormone receptor binding;0.000139006130159897!GO:0043021;ribonucleoprotein binding;0.000141523395709739!GO:0046914;transition metal ion binding;0.000141822561889987!GO:0005885;Arp2/3 protein complex;0.000155720119824365!GO:0004004;ATP-dependent RNA helicase activity;0.000167702980730077!GO:0048519;negative regulation of biological process;0.000180689538036619!GO:0004674;protein serine/threonine kinase activity;0.000182930669438563!GO:0051187;cofactor catabolic process;0.000190436289965248!GO:0008168;methyltransferase activity;0.000211452746077386!GO:0007242;intracellular signaling cascade;0.000212438044400529!GO:0016741;transferase activity, transferring one-carbon groups;0.00021288668616099!GO:0048522;positive regulation of cellular process;0.000230310625846277!GO:0005525;GTP binding;0.000235857067673065!GO:0008654;phospholipid biosynthetic process;0.000235857067673065!GO:0031326;regulation of cellular biosynthetic process;0.000242472914605457!GO:0032774;RNA biosynthetic process;0.000258654642676602!GO:0065007;biological regulation;0.000268384740783989!GO:0016564;transcription repressor activity;0.000273036359627018!GO:0035257;nuclear hormone receptor binding;0.000276631426852771!GO:0004518;nuclease activity;0.000297792614850929!GO:0006351;transcription, DNA-dependent;0.000323124931932398!GO:0008033;tRNA processing;0.000324473650164297!GO:0000314;organellar small ribosomal subunit;0.00037920970218709!GO:0005763;mitochondrial small ribosomal subunit;0.00037920970218709!GO:0006383;transcription from RNA polymerase III promoter;0.000380224918295563!GO:0050790;regulation of catalytic activity;0.000380800127183058!GO:0006891;intra-Golgi vesicle-mediated transport;0.000381792088461256!GO:0003684;damaged DNA binding;0.000408057200540476!GO:0043623;cellular protein complex assembly;0.000425122726892152!GO:0006289;nucleotide-excision repair;0.000425122726892152!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.000437466765579114!GO:0015630;microtubule cytoskeleton;0.000494782096688126!GO:0044452;nucleolar part;0.000512245726259249!GO:0019843;rRNA binding;0.000535258397383392!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.000553401995417115!GO:0045449;regulation of transcription;0.000579142073476427!GO:0000075;cell cycle checkpoint;0.000579142073476427!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.000607598318543348!GO:0005769;early endosome;0.00063140291995275!GO:0046489;phosphoinositide biosynthetic process;0.000634960914118018!GO:0009615;response to virus;0.000668278279336545!GO:0006352;transcription initiation;0.000683868038368981!GO:0009892;negative regulation of metabolic process;0.000724024171326783!GO:0003924;GTPase activity;0.000724024171326783!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.000765630988541836!GO:0003677;DNA binding;0.000773567706888079!GO:0006650;glycerophospholipid metabolic process;0.000787178699433398!GO:0003678;DNA helicase activity;0.000821465771531224!GO:0007006;mitochondrial membrane organization and biogenesis;0.000841856274678554!GO:0005657;replication fork;0.000848119210445243!GO:0006302;double-strand break repair;0.000855139478224809!GO:0005741;mitochondrial outer membrane;0.000865428655275893!GO:0031072;heat shock protein binding;0.000953954382809122!GO:0030658;transport vesicle membrane;0.000977139433441172!GO:0051087;chaperone binding;0.00100083150305896!GO:0006611;protein export from nucleus;0.00102949735836228!GO:0006414;translational elongation;0.00103575527367155!GO:0043681;protein import into mitochondrion;0.00108438322190137!GO:0009967;positive regulation of signal transduction;0.00111051809007973!GO:0002474;antigen processing and presentation of peptide antigen via MHC class I;0.0011239038338342!GO:0051252;regulation of RNA metabolic process;0.00115606456803834!GO:0051329;interphase of mitotic cell cycle;0.00118110298390917!GO:0004527;exonuclease activity;0.00123796192915656!GO:0000139;Golgi membrane;0.00134461574814716!GO:0019867;outer membrane;0.00146688918606831!GO:0042110;T cell activation;0.00148851137225612!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.00148851137225612!GO:0016281;eukaryotic translation initiation factor 4F complex;0.00149353903257002!GO:0016853;isomerase activity;0.0014936377497482!GO:0016251;general RNA polymerase II transcription factor activity;0.00159197027289391!GO:0051092;activation of NF-kappaB transcription factor;0.00159202510039234!GO:0048500;signal recognition particle;0.00160219930178057!GO:0008637;apoptotic mitochondrial changes;0.00161565933041685!GO:0051325;interphase;0.00168839537034384!GO:0031968;organelle outer membrane;0.00170337246328719!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00180450971788539!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00180450971788539!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00180450971788539!GO:0030118;clathrin coat;0.00180690342658852!GO:0016197;endosome transport;0.00180823765214089!GO:0032561;guanyl ribonucleotide binding;0.00188352211826108!GO:0019001;guanyl nucleotide binding;0.00188352211826108!GO:0008312;7S RNA binding;0.00190431245129258!GO:0006338;chromatin remodeling;0.00190431245129258!GO:0022890;inorganic cation transmembrane transporter activity;0.00199914712198886!GO:0046474;glycerophospholipid biosynthetic process;0.00205042053756792!GO:0009889;regulation of biosynthetic process;0.00208221381011794!GO:0032259;methylation;0.00211594202499145!GO:0006839;mitochondrial transport;0.00216805308702773!GO:0008094;DNA-dependent ATPase activity;0.00218365117064996!GO:0060090;molecular adaptor activity;0.00220045707793649!GO:0008624;induction of apoptosis by extracellular signals;0.00221416320681626!GO:0007265;Ras protein signal transduction;0.00224870675788062!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.00226886926094725!GO:0045047;protein targeting to ER;0.00226886926094725!GO:0004437;inositol or phosphatidylinositol phosphatase activity;0.00242147774138469!GO:0006405;RNA export from nucleus;0.00243119000889167!GO:0005819;spindle;0.00248238185634967!GO:0005637;nuclear inner membrane;0.00252767032283063!GO:0000079;regulation of cyclin-dependent protein kinase activity;0.00254231933578113!GO:0005667;transcription factor complex;0.00255747843513517!GO:0030660;Golgi-associated vesicle membrane;0.00257571920763113!GO:0047485;protein N-terminus binding;0.00278505221445847!GO:0007264;small GTPase mediated signal transduction;0.00296982771777258!GO:0006626;protein targeting to mitochondrion;0.00308030149944595!GO:0051090;regulation of transcription factor activity;0.0031099873859911!GO:0007050;cell cycle arrest;0.00324957244100986!GO:0005774;vacuolar membrane;0.00354570272472547!GO:0005684;U2-dependent spliceosome;0.00356734579868158!GO:0000049;tRNA binding;0.0036794886799015!GO:0008022;protein C-terminus binding;0.00376989728007127!GO:0030518;steroid hormone receptor signaling pathway;0.0038356885173844!GO:0045454;cell redox homeostasis;0.00387440267457897!GO:0042802;identical protein binding;0.00391705372328288!GO:0000287;magnesium ion binding;0.00395848604120835!GO:0051920;peroxiredoxin activity;0.00403756827952723!GO:0000209;protein polyubiquitination;0.00420705415503349!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.00443600908541549!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.00443600908541549!GO:0016481;negative regulation of transcription;0.00446909727604425!GO:0051336;regulation of hydrolase activity;0.00459525413882411!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.00464657018070402!GO:0006607;NLS-bearing substrate import into nucleus;0.00470246321861639!GO:0019210;kinase inhibitor activity;0.00478308824152509!GO:0000775;chromosome, pericentric region;0.00487584179320654!GO:0030521;androgen receptor signaling pathway;0.00517790574560525!GO:0003682;chromatin binding;0.00527518421855299!GO:0003711;transcription elongation regulator activity;0.00528798328513462!GO:0006355;regulation of transcription, DNA-dependent;0.00547766509410648!GO:0008408;3'-5' exonuclease activity;0.0054845133937998!GO:0001836;release of cytochrome c from mitochondria;0.00553341005493805!GO:0051539;4 iron, 4 sulfur cluster binding;0.0059159619888762!GO:0031124;mRNA 3'-end processing;0.00591687162594674!GO:0022415;viral reproductive process;0.00596080567971015!GO:0019783;small conjugating protein-specific protease activity;0.00597928073585359!GO:0004532;exoribonuclease activity;0.00618776472441942!GO:0016896;exoribonuclease activity, producing 5'-phosphomonoesters;0.00618776472441942!GO:0043414;biopolymer methylation;0.00632917360337!GO:0051052;regulation of DNA metabolic process;0.00638037283924345!GO:0006091;generation of precursor metabolites and energy;0.00640240535836717!GO:0004860;protein kinase inhibitor activity;0.0064674251486366!GO:0019901;protein kinase binding;0.00651340444161436!GO:0051251;positive regulation of lymphocyte activation;0.00654959763709645!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.00656915644399484!GO:0009165;nucleotide biosynthetic process;0.00657020538857463!GO:0048471;perinuclear region of cytoplasm;0.00657453003083872!GO:0016584;nucleosome positioning;0.00663681423522855!GO:0005048;signal sequence binding;0.00676546472138727!GO:0043488;regulation of mRNA stability;0.0068166862723645!GO:0043487;regulation of RNA stability;0.0068166862723645!GO:0004843;ubiquitin-specific protease activity;0.00685691315146866!GO:0022406;membrane docking;0.00687656330909386!GO:0048278;vesicle docking;0.00687656330909386!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;0.00698494975528327!GO:0000776;kinetochore;0.00701434642951643!GO:0006497;protein amino acid lipidation;0.00706528619393707!GO:0030125;clathrin vesicle coat;0.00706528619393707!GO:0030665;clathrin coated vesicle membrane;0.00706528619393707!GO:0032200;telomere organization and biogenesis;0.00706528619393707!GO:0000723;telomere maintenance;0.00706528619393707!GO:0044437;vacuolar part;0.00751547128588947!GO:0005765;lysosomal membrane;0.00753658746341248!GO:0030880;RNA polymerase complex;0.00753774730317201!GO:0016272;prefoldin complex;0.00756301902856491!GO:0004177;aminopeptidase activity;0.00796969595148897!GO:0046966;thyroid hormone receptor binding;0.00803492160180741!GO:0016859;cis-trans isomerase activity;0.00807934906526406!GO:0003714;transcription corepressor activity;0.00808056449440003!GO:0051789;response to protein stimulus;0.00817339372742812!GO:0006986;response to unfolded protein;0.00817339372742812!GO:0007093;mitotic cell cycle checkpoint;0.00821379758267741!GO:0006904;vesicle docking during exocytosis;0.00821379758267741!GO:0015631;tubulin binding;0.00821379758267741!GO:0000184;mRNA catabolic process, nonsense-mediated decay;0.00843388312654428!GO:0031982;vesicle;0.00850965976940434!GO:0006007;glucose catabolic process;0.00854365384282516!GO:0042101;T cell receptor complex;0.00868089492641994!GO:0048518;positive regulation of biological process;0.00872947982339387!GO:0031123;RNA 3'-end processing;0.00894998457495847!GO:0007088;regulation of mitosis;0.00924306281550323!GO:0006284;base-excision repair;0.00927077914350955!GO:0004197;cysteine-type endopeptidase activity;0.00930882517670979!GO:0006367;transcription initiation from RNA polymerase II promoter;0.00935637744635594!GO:0051059;NF-kappaB binding;0.00940777402601142!GO:0007034;vacuolar transport;0.00987533393537714!GO:0030522;intracellular receptor-mediated signaling pathway;0.00998409054425101!GO:0005669;transcription factor TFIID complex;0.0100162363857921!GO:0003746;translation elongation factor activity;0.0102946692895492!GO:0019900;kinase binding;0.0103604732431029!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.0107240016413438!GO:0015002;heme-copper terminal oxidase activity;0.0107240016413438!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.0107240016413438!GO:0004129;cytochrome-c oxidase activity;0.0107240016413438!GO:0004003;ATP-dependent DNA helicase activity;0.0108415807470387!GO:0006376;mRNA splice site selection;0.0110032056233638!GO:0000389;nuclear mRNA 3'-splice site recognition;0.0110032056233638!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.0110147317529039!GO:0051540;metal cluster binding;0.0110922155694063!GO:0051536;iron-sulfur cluster binding;0.0110922155694063!GO:0045936;negative regulation of phosphate metabolic process;0.0111476353517646!GO:0006506;GPI anchor biosynthetic process;0.0114893844926823!GO:0004221;ubiquitin thiolesterase activity;0.0114989877367046!GO:0030258;lipid modification;0.0114989877367046!GO:0006505;GPI anchor metabolic process;0.0117679933167204!GO:0035258;steroid hormone receptor binding;0.0124394145839724!GO:0009112;nucleobase metabolic process;0.0125493111450109!GO:0000339;RNA cap binding;0.0129207171069435!GO:0008320;protein transmembrane transporter activity;0.0131880238974086!GO:0043281;regulation of caspase activity;0.0133696006535476!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.0134030139213888!GO:0000428;DNA-directed RNA polymerase complex;0.0134030139213888!GO:0031625;ubiquitin protein ligase binding;0.0134319915154213!GO:0042771;DNA damage response, signal transduction by p53 class mediator resulting in induction of apoptosis;0.0137423453578887!GO:0006919;caspase activation;0.0137423453578887!GO:0031902;late endosome membrane;0.0139663698052924!GO:0016788;hydrolase activity, acting on ester bonds;0.0142295241384897!GO:0016569;covalent chromatin modification;0.0143482628999399!GO:0016790;thiolester hydrolase activity;0.0143490602073783!GO:0005869;dynactin complex;0.0146585855144128!GO:0033116;ER-Golgi intermediate compartment membrane;0.0147694221690285!GO:0030137;COPI-coated vesicle;0.0148242667732289!GO:0008047;enzyme activator activity;0.0148242667732289!GO:0030663;COPI coated vesicle membrane;0.014848952087241!GO:0030126;COPI vesicle coat;0.014848952087241!GO:0046483;heterocycle metabolic process;0.0149712005576891!GO:0006378;mRNA polyadenylation;0.0150886200399446!GO:0051881;regulation of mitochondrial membrane potential;0.0151669544322641!GO:0001772;immunological synapse;0.0153709490243235!GO:0046467;membrane lipid biosynthetic process;0.0154529857314783!GO:0000738;DNA catabolic process, exonucleolytic;0.0156668056091841!GO:0030119;AP-type membrane coat adaptor complex;0.0158771684472831!GO:0031252;leading edge;0.0161373901833704!GO:0032981;mitochondrial respiratory chain complex I assembly;0.0165825378093724!GO:0010257;NADH dehydrogenase complex assembly;0.0165825378093724!GO:0033108;mitochondrial respiratory chain complex assembly;0.0165825378093724!GO:0022884;macromolecule transmembrane transporter activity;0.016744870857144!GO:0015450;P-P-bond-hydrolysis-driven protein transmembrane transporter activity;0.016744870857144!GO:0050811;GABA receptor binding;0.0173072390361706!GO:0000082;G1/S transition of mitotic cell cycle;0.0173218253447638!GO:0030132;clathrin coat of coated pit;0.0176739867593456!GO:0048487;beta-tubulin binding;0.0177025822431487!GO:0015980;energy derivation by oxidation of organic compounds;0.0180087548940162!GO:0000726;non-recombinational repair;0.0181152388953143!GO:0008097;5S rRNA binding;0.01824751219603!GO:0042393;histone binding;0.01824751219603!GO:0008625;induction of apoptosis via death domain receptors;0.0183513759422363!GO:0030131;clathrin adaptor complex;0.0185255706347847!GO:0042158;lipoprotein biosynthetic process;0.0194399333029032!GO:0000307;cyclin-dependent protein kinase holoenzyme complex;0.0197858012368225!GO:0043022;ribosome binding;0.0199176561286492!GO:0007004;telomere maintenance via telomerase;0.0201113128313664!GO:0048002;antigen processing and presentation of peptide antigen;0.0205225014658325!GO:0050865;regulation of cell activation;0.0208027959077839!GO:0000781;chromosome, telomeric region;0.0208027959077839!GO:0000059;protein import into nucleus, docking;0.0208027959077839!GO:0030867;rough endoplasmic reticulum membrane;0.0208630500117429!GO:0051249;regulation of lymphocyte activation;0.0210184061286042!GO:0048468;cell development;0.0210184061286042!GO:0016605;PML body;0.021321640881187!GO:0008276;protein methyltransferase activity;0.0213680145223357!GO:0006144;purine base metabolic process;0.0213680145223357!GO:0004428;inositol or phosphatidylinositol kinase activity;0.0213910050982457!GO:0006013;mannose metabolic process;0.021695257082308!GO:0031410;cytoplasmic vesicle;0.0218589642765922!GO:0016570;histone modification;0.0221034944767693!GO:0000178;exosome (RNase complex);0.0221965270473051!GO:0005832;chaperonin-containing T-complex;0.0224989464322608!GO:0043596;nuclear replication fork;0.0227296321279095!GO:0005070;SH3/SH2 adaptor activity;0.0227355927065771!GO:0016311;dephosphorylation;0.0227428861175476!GO:0051452;cellular pH reduction;0.0227428861175476!GO:0051453;regulation of cellular pH;0.0227428861175476!GO:0045851;pH reduction;0.0227428861175476!GO:0016791;phosphoric monoester hydrolase activity;0.023112373891011!GO:0006914;autophagy;0.0233339284381799!GO:0042326;negative regulation of phosphorylation;0.0234690128796404!GO:0016763;transferase activity, transferring pentosyl groups;0.0235320288822815!GO:0044438;microbody part;0.0236027761848313!GO:0044439;peroxisomal part;0.0236027761848313!GO:0050870;positive regulation of T cell activation;0.0241248336833123!GO:0008213;protein amino acid alkylation;0.0245745033530756!GO:0006479;protein amino acid methylation;0.0245745033530756!GO:0005996;monosaccharide metabolic process;0.0247459951748215!GO:0031988;membrane-bound vesicle;0.024820098071738!GO:0046365;monosaccharide catabolic process;0.0248600310488925!GO:0007021;tubulin folding;0.0253405524736856!GO:0046588;negative regulation of calcium-dependent cell-cell adhesion;0.025563582984004!GO:0046586;regulation of calcium-dependent cell-cell adhesion;0.025563582984004!GO:0019318;hexose metabolic process;0.0257572900573863!GO:0006730;one-carbon compound metabolic process;0.0257946323400839!GO:0009116;nucleoside metabolic process;0.025805404339711!GO:0046822;regulation of nucleocytoplasmic transport;0.0268514776526113!GO:0042770;DNA damage response, signal transduction;0.0273750518363149!GO:0019976;interleukin-2 binding;0.0274777250424025!GO:0004911;interleukin-2 receptor activity;0.0274777250424025!GO:0030134;ER to Golgi transport vesicle;0.027605195751448!GO:0004576;oligosaccharyl transferase activity;0.0277963540791644!GO:0015923;mannosidase activity;0.0278002517214294!GO:0030127;COPII vesicle coat;0.027987707642766!GO:0012507;ER to Golgi transport vesicle membrane;0.027987707642766!GO:0030330;DNA damage response, signal transduction by p53 class mediator;0.0280074207070392!GO:0007259;JAK-STAT cascade;0.0280400750570413!GO:0016893;endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters;0.0280829277257092!GO:0009451;RNA modification;0.0280988550744715!GO:0050852;T cell receptor signaling pathway;0.0281689667461027!GO:0032508;DNA duplex unwinding;0.0281847847306762!GO:0032392;DNA geometric change;0.0281847847306762!GO:0051098;regulation of binding;0.0285583000581942!GO:0009161;ribonucleoside monophosphate metabolic process;0.0286320116686246!GO:0009156;ribonucleoside monophosphate biosynthetic process;0.0286320116686246!GO:0030133;transport vesicle;0.0286500238343251!GO:0043621;protein self-association;0.0286500238343251!GO:0042608;T cell receptor binding;0.028994070378033!GO:0016505;apoptotic protease activator activity;0.0290547405172596!GO:0008629;induction of apoptosis by intracellular signals;0.0294437977426686!GO:0003988;acetyl-CoA C-acyltransferase activity;0.0295211318583727!GO:0008139;nuclear localization sequence binding;0.0295211318583727!GO:0016891;endoribonuclease activity, producing 5'-phosphomonoesters;0.0298989408723548!GO:0046426;negative regulation of JAK-STAT cascade;0.0307062124843075!GO:0019955;cytokine binding;0.0308971374960746!GO:0016796;exonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters;0.0308971374960746!GO:0005083;small GTPase regulator activity;0.0309282078510845!GO:0003725;double-stranded RNA binding;0.0309350156341435!GO:0032940;secretion by cell;0.0310672542054571!GO:0046164;alcohol catabolic process;0.0312712798260172!GO:0016301;kinase activity;0.0315032987916926!GO:0005521;lamin binding;0.0315032987916926!GO:0006595;polyamine metabolic process;0.031503864253412!GO:0004659;prenyltransferase activity;0.031503864253412!GO:0043028;caspase regulator activity;0.031503864253412!GO:0031903;microbody membrane;0.0316057081462239!GO:0005778;peroxisomal membrane;0.0316057081462239!GO:0000175;3'-5'-exoribonuclease activity;0.0316057081462239!GO:0042532;negative regulation of tyrosine phosphorylation of STAT protein;0.0316057081462239!GO:0042518;negative regulation of tyrosine phosphorylation of Stat3 protein;0.0316057081462239!GO:0050732;negative regulation of peptidyl-tyrosine phosphorylation;0.0316057081462239!GO:0045045;secretory pathway;0.0323925641706793!GO:0008017;microtubule binding;0.032524212011064!GO:0051223;regulation of protein transport;0.0326325173360211!GO:0009124;nucleoside monophosphate biosynthetic process;0.0327405181299595!GO:0009123;nucleoside monophosphate metabolic process;0.0327405181299595!GO:0017134;fibroblast growth factor binding;0.0328795675684176!GO:0022411;cellular component disassembly;0.0328795675684176!GO:0030041;actin filament polymerization;0.0330397308491399!GO:0000123;histone acetyltransferase complex;0.0343848937732401!GO:0045086;positive regulation of interleukin-2 biosynthetic process;0.0348084511119987!GO:0050681;androgen receptor binding;0.0349153689245291!GO:0008538;proteasome activator activity;0.0349153689245291!GO:0003950;NAD+ ADP-ribosyltransferase activity;0.0349298375450723!GO:0006779;porphyrin biosynthetic process;0.0349298375450723!GO:0033014;tetrapyrrole biosynthetic process;0.0349298375450723!GO:0002378;immunoglobulin biosynthetic process;0.0351652158272782!GO:0001911;negative regulation of leukocyte mediated cytotoxicity;0.0351652158272782!GO:0001915;negative regulation of T cell mediated cytotoxicity;0.0351652158272782!GO:0008250;oligosaccharyl transferase complex;0.0352437657828586!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.0354700248640935!GO:0006406;mRNA export from nucleus;0.0356634988479772!GO:0002820;negative regulation of adaptive immune response;0.0356634988479772!GO:0002823;negative regulation of adaptive immune response based on somatic recombination of immune receptors built from immunoglobulin superfamily domains;0.0356634988479772!GO:0000096;sulfur amino acid metabolic process;0.0358266777721266!GO:0007007;inner mitochondrial membrane organization and biogenesis;0.0361806811326986!GO:0050863;regulation of T cell activation;0.0361806811326986!GO:0051091;positive regulation of transcription factor activity;0.0364910196186925!GO:0043087;regulation of GTPase activity;0.036659464688404!GO:0040029;regulation of gene expression, epigenetic;0.0369889172034101!GO:0016407;acetyltransferase activity;0.0374864590109454!GO:0019320;hexose catabolic process;0.0380193788573925!GO:0045892;negative regulation of transcription, DNA-dependent;0.0380193788573925!GO:0031647;regulation of protein stability;0.038129415072376!GO:0000090;mitotic anaphase;0.0382765197498409!GO:0051322;anaphase;0.0382765197498409!GO:0043631;RNA polyadenylation;0.038670783484466!GO:0008180;signalosome;0.038670783484466!GO:0003887;DNA-directed DNA polymerase activity;0.038670783484466!GO:0000288;mRNA catabolic process, deadenylation-dependent decay;0.0394652861285758!GO:0005758;mitochondrial intermembrane space;0.0396845710454709!GO:0007040;lysosome organization and biogenesis;0.0398301212993207!GO:0051287;NAD binding;0.0400339111601985!GO:0030130;clathrin coat of trans-Golgi network vesicle;0.0402175303170445!GO:0012510;trans-Golgi network transport vesicle membrane;0.0402175303170445!GO:0000228;nuclear chromosome;0.040249392438872!GO:0050662;coenzyme binding;0.040584694271416!GO:0008757;S-adenosylmethionine-dependent methyltransferase activity;0.0410507670911011!GO:0004402;histone acetyltransferase activity;0.0411252169797443!GO:0004468;lysine N-acetyltransferase activity;0.0411252169797443!GO:0000119;mediator complex;0.0411954997071686!GO:0005791;rough endoplasmic reticulum;0.0425332904843961!GO:0044262;cellular carbohydrate metabolic process;0.0425563680657402!GO:0005784;translocon complex;0.0426077533458881!GO:0016780;phosphotransferase activity, for other substituted phosphate groups;0.0427190735285698!GO:0046649;lymphocyte activation;0.042880112240745!GO:0006096;glycolysis;0.0428854685862606!GO:0019058;viral infectious cycle;0.0428890377424095!GO:0043161;proteasomal ubiquitin-dependent protein catabolic process;0.0429998406561145!GO:0006356;regulation of transcription from RNA polymerase I promoter;0.0430354338947923!GO:0006778;porphyrin metabolic process;0.0430354338947923!GO:0033013;tetrapyrrole metabolic process;0.0430354338947923!GO:0045947;negative regulation of translational initiation;0.0431825430010723!GO:0030695;GTPase regulator activity;0.0438231088636735!GO:0032039;integrator complex;0.0440419040240792!GO:0004722;protein serine/threonine phosphatase activity;0.0448338603452325!GO:0000118;histone deacetylase complex;0.0448338603452325!GO:0019079;viral genome replication;0.0453322499188537!GO:0005092;GDP-dissociation inhibitor activity;0.0454628706993838!GO:0045603;positive regulation of endothelial cell differentiation;0.0457401674626658!GO:0031461;cullin-RING ubiquitin ligase complex;0.0457580490710754!GO:0031371;ubiquitin conjugating enzyme complex;0.0461886677123147!GO:0043280;positive regulation of caspase activity;0.0466148478544637!GO:0030693;caspase activity;0.0472312365130847!GO:0043284;biopolymer biosynthetic process;0.0475470443850492!GO:0019904;protein domain specific binding;0.0475470443850492!GO:0005062;hematopoietin/interferon-class (D200-domain) cytokine receptor signal transducer activity;0.0477058203371687!GO:0001784;phosphotyrosine binding;0.0478249483575988!GO:0033673;negative regulation of kinase activity;0.0479270678379182!GO:0006469;negative regulation of protein kinase activity;0.0479270678379182!GO:0016491;oxidoreductase activity;0.0489945962372983!GO:0006308;DNA catabolic process;0.049307342607645!GO:0018193;peptidyl-amino acid modification;0.0498818608808136 | |||
|sample_id=11793 | |sample_id=11793 | ||
|sample_note= | |sample_note= | ||
| Line 76: | Line 99: | ||
|sample_tissue=blood | |sample_tissue=blood | ||
|top_motifs=ELF1,2,4:2.34943729154;PAX3,7:2.11417387143;PDX1:2.012966665;STAT1,3:1.97201138529;CDX1,2,4:1.95372515752;TLX2:1.78749102629;ZBTB16:1.69400748248;ETS1,2:1.4558292122;ELK1,4_GABP{A,B1}:1.37063357037;RUNX1..3:1.36489304747;SPI1:1.16622447886;RORA:1.16141819893;FOX{F1,F2,J1}:1.08864134851;YY1:1.07496458083;DMAP1_NCOR{1,2}_SMARC:1.04460671962;PBX1:0.97435855212;HMX1:0.968205212597;IRF1,2:0.944086670452;FOX{D1,D2}:0.93643009894;GATA6:0.918707620393;SPIB:0.801548596009;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.766564377185;TGIF1:0.751732358008;FOXO1,3,4:0.702549322343;NANOG{mouse}:0.672168871611;CRX:0.634735710379;ZEB1:0.634734647469;SNAI1..3:0.620683397739;BREu{core}:0.573565934338;NKX6-1,2:0.544977868469;BPTF:0.521281313144;LMO2:0.517547938566;CUX2:0.496618917826;POU1F1:0.491446166767;ATF5_CREB3:0.468478697994;STAT5{A,B}:0.466744868559;NKX2-2,8:0.450045652035;IKZF2:0.449623508303;SREBF1,2:0.443756508145;SPZ1:0.421683817843;LEF1_TCF7_TCF7L1,2:0.409910661008;HAND1,2:0.396640114524;MYOD1:0.377399769686;FOXA2:0.36455669881;CREB1:0.337616997842;IRF7:0.32443980721;NRF1:0.315365135841;E2F1..5:0.312386015246;FOXN1:0.28646668033;POU2F1..3:0.285730452803;FOXQ1:0.263147378197;STAT2,4,6:0.250168105947;SOX5:0.245213783924;OCT4_SOX2{dimer}:0.216497053121;PAX4:0.194715226704;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.164110004846;AIRE:0.162357981422;ALX1:0.155420753153;NFKB1_REL_RELA:0.149277315431;ZNF143:0.147191361145;PAX2:0.130992831868;FOXM1:0.109388897477;EP300:0.104810110374;EVI1:0.100165414301;POU3F1..4:0.091866841427;MYB:0.085421254001;RFX2..5_RFXANK_RFXAP:0.080295726651;PAX8:0.04801061534;NR3C1:0.0391417331563;NFY{A,B,C}:0.0350085922123;AHR_ARNT_ARNT2:0.00446779973973;NFIX:-0.00105816142254;HES1:-0.0310240212319;ATF2:-0.0333983553214;HOX{A6,A7,B6,B7}:-0.0372740610961;SMAD1..7,9:-0.0392070876998;NANOG:-0.0395441078416;PAX6:-0.0518567634947;JUN:-0.0753615244589;HNF4A_NR2F1,2:-0.0888858602064;NKX3-1:-0.115829216667;ATF4:-0.138356010574;NR5A1,2:-0.144221027644;ARID5B:-0.144724329474;NFIL3:-0.147768897109;GCM1,2:-0.172561444389;PPARG:-0.183033241297;ZNF148:-0.194193279693;SOX2:-0.209714791553;RXRA_VDR{dimer}:-0.235184825385;TP53:-0.270313396148;ZNF423:-0.272887806564;VSX1,2:-0.272951560141;TAL1_TCF{3,4,12}:-0.279128059665;HNF1A:-0.28070851286;GLI1..3:-0.294839192312;PRRX1,2:-0.315129990167;GFI1:-0.315320496072;NHLH1,2:-0.321938895607;PITX1..3:-0.349221396685;NFATC1..3:-0.384848512086;HIF1A:-0.387531298011;ZNF384:-0.397675739105;MYFfamily:-0.448790239801;ESR1:-0.45528776006;FOXP1:-0.45866349856;ONECUT1,2:-0.482252718329;FOX{I1,J2}:-0.491195485654;NR1H4:-0.503126697402;NFE2L1:-0.515584855836;NKX2-1,4:-0.516151153555;FOS_FOS{B,L1}_JUN{B,D}:-0.519462002605;RBPJ:-0.554350429742;NFE2:-0.566651076417;EBF1:-0.589523650282;HLF:-0.593439952316;RREB1:-0.597188477818;ZNF238:-0.611503280934;FOXP3:-0.612259777046;BACH2:-0.629488934321;CEBPA,B_DDIT3:-0.629737767897;FOSL2:-0.651822233146;REST:-0.6594118764;TFCP2:-0.667563119814;ADNP_IRX_SIX_ZHX:-0.682279320492;ALX4:-0.689917715406;NKX2-3_NKX2-5:-0.721641453574;HOXA9_MEIS1:-0.744122045897;SOX{8,9,10}:-0.752869029006;ESRRA:-0.759531143045;TBX4,5:-0.769257729494;HBP1_HMGB_SSRP1_UBTF:-0.776337447456;MAFB:-0.78792766806;LHX3,4:-0.798860544664;UFEwm:-0.808196735721;TOPORS:-0.811528206752;SRF:-0.83622062038;NR6A1:-0.871629702496;AR:-0.874478125423;ATF6:-0.878963914126;HMGA1,2:-0.895411217977;GFI1B:-0.898895381749;ZBTB6:-0.90590435565;CDC5L:-0.907497384869;TFAP4:-0.907788272389;NFE2L2:-0.914384237475;MEF2{A,B,C,D}:-0.920278396234;HOX{A5,B5}:-0.929076907246;RFX1:-0.934863542671;MED-1{core}:-0.978655684091;KLF4:-0.986798903778;DBP:-1.00688267411;SOX17:-1.0303181233;bHLH_family:-1.0368617726;MZF1:-1.04124105802;PRDM1:-1.04216204163;POU5F1:-1.05433009074;FOXD3:-1.06527870746;PAX5:-1.08264668455;TFDP1:-1.08806801909;GATA4:-1.08932470854;ZFP161:-1.12047616095;T:-1.13474377481;MYBL2:-1.158113994;XCPE1{core}:-1.16918497653;EGR1..3:-1.19395266989;GTF2I:-1.2078705768;MAZ:-1.21497228467;POU6F1:-1.23123675136;MTE{core}:-1.30826482809;GZF1:-1.35233288568;EN1,2:-1.42117209091;MTF1:-1.42294556291;HOX{A4,D4}:-1.43777522137;HIC1:-1.49078549518;TEF:-1.51701550233;GTF2A1,2:-1.57066942192;PATZ1:-1.57138513722;TFAP2B:-1.62404704768;RXR{A,B,G}:-1.62529622896;HSF1,2:-1.62887485037;NKX3-2:-1.63038440931;TEAD1:-1.66471077429;TLX1..3_NFIC{dimer}:-1.7220526582;PAX1,9:-1.72911194078;TBP:-1.83556128686;SP1:-1.85138544905;TFAP2{A,C}:-1.86280078236;ZIC1..3:-1.94452333375;XBP1:-1.96219445663;IKZF1:-2.01557957196;FOXL1:-2.14259504052 | |top_motifs=ELF1,2,4:2.34943729154;PAX3,7:2.11417387143;PDX1:2.012966665;STAT1,3:1.97201138529;CDX1,2,4:1.95372515752;TLX2:1.78749102629;ZBTB16:1.69400748248;ETS1,2:1.4558292122;ELK1,4_GABP{A,B1}:1.37063357037;RUNX1..3:1.36489304747;SPI1:1.16622447886;RORA:1.16141819893;FOX{F1,F2,J1}:1.08864134851;YY1:1.07496458083;DMAP1_NCOR{1,2}_SMARC:1.04460671962;PBX1:0.97435855212;HMX1:0.968205212597;IRF1,2:0.944086670452;FOX{D1,D2}:0.93643009894;GATA6:0.918707620393;SPIB:0.801548596009;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.766564377185;TGIF1:0.751732358008;FOXO1,3,4:0.702549322343;NANOG{mouse}:0.672168871611;CRX:0.634735710379;ZEB1:0.634734647469;SNAI1..3:0.620683397739;BREu{core}:0.573565934338;NKX6-1,2:0.544977868469;BPTF:0.521281313144;LMO2:0.517547938566;CUX2:0.496618917826;POU1F1:0.491446166767;ATF5_CREB3:0.468478697994;STAT5{A,B}:0.466744868559;NKX2-2,8:0.450045652035;IKZF2:0.449623508303;SREBF1,2:0.443756508145;SPZ1:0.421683817843;LEF1_TCF7_TCF7L1,2:0.409910661008;HAND1,2:0.396640114524;MYOD1:0.377399769686;FOXA2:0.36455669881;CREB1:0.337616997842;IRF7:0.32443980721;NRF1:0.315365135841;E2F1..5:0.312386015246;FOXN1:0.28646668033;POU2F1..3:0.285730452803;FOXQ1:0.263147378197;STAT2,4,6:0.250168105947;SOX5:0.245213783924;OCT4_SOX2{dimer}:0.216497053121;PAX4:0.194715226704;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.164110004846;AIRE:0.162357981422;ALX1:0.155420753153;NFKB1_REL_RELA:0.149277315431;ZNF143:0.147191361145;PAX2:0.130992831868;FOXM1:0.109388897477;EP300:0.104810110374;EVI1:0.100165414301;POU3F1..4:0.091866841427;MYB:0.085421254001;RFX2..5_RFXANK_RFXAP:0.080295726651;PAX8:0.04801061534;NR3C1:0.0391417331563;NFY{A,B,C}:0.0350085922123;AHR_ARNT_ARNT2:0.00446779973973;NFIX:-0.00105816142254;HES1:-0.0310240212319;ATF2:-0.0333983553214;HOX{A6,A7,B6,B7}:-0.0372740610961;SMAD1..7,9:-0.0392070876998;NANOG:-0.0395441078416;PAX6:-0.0518567634947;JUN:-0.0753615244589;HNF4A_NR2F1,2:-0.0888858602064;NKX3-1:-0.115829216667;ATF4:-0.138356010574;NR5A1,2:-0.144221027644;ARID5B:-0.144724329474;NFIL3:-0.147768897109;GCM1,2:-0.172561444389;PPARG:-0.183033241297;ZNF148:-0.194193279693;SOX2:-0.209714791553;RXRA_VDR{dimer}:-0.235184825385;TP53:-0.270313396148;ZNF423:-0.272887806564;VSX1,2:-0.272951560141;TAL1_TCF{3,4,12}:-0.279128059665;HNF1A:-0.28070851286;GLI1..3:-0.294839192312;PRRX1,2:-0.315129990167;GFI1:-0.315320496072;NHLH1,2:-0.321938895607;PITX1..3:-0.349221396685;NFATC1..3:-0.384848512086;HIF1A:-0.387531298011;ZNF384:-0.397675739105;MYFfamily:-0.448790239801;ESR1:-0.45528776006;FOXP1:-0.45866349856;ONECUT1,2:-0.482252718329;FOX{I1,J2}:-0.491195485654;NR1H4:-0.503126697402;NFE2L1:-0.515584855836;NKX2-1,4:-0.516151153555;FOS_FOS{B,L1}_JUN{B,D}:-0.519462002605;RBPJ:-0.554350429742;NFE2:-0.566651076417;EBF1:-0.589523650282;HLF:-0.593439952316;RREB1:-0.597188477818;ZNF238:-0.611503280934;FOXP3:-0.612259777046;BACH2:-0.629488934321;CEBPA,B_DDIT3:-0.629737767897;FOSL2:-0.651822233146;REST:-0.6594118764;TFCP2:-0.667563119814;ADNP_IRX_SIX_ZHX:-0.682279320492;ALX4:-0.689917715406;NKX2-3_NKX2-5:-0.721641453574;HOXA9_MEIS1:-0.744122045897;SOX{8,9,10}:-0.752869029006;ESRRA:-0.759531143045;TBX4,5:-0.769257729494;HBP1_HMGB_SSRP1_UBTF:-0.776337447456;MAFB:-0.78792766806;LHX3,4:-0.798860544664;UFEwm:-0.808196735721;TOPORS:-0.811528206752;SRF:-0.83622062038;NR6A1:-0.871629702496;AR:-0.874478125423;ATF6:-0.878963914126;HMGA1,2:-0.895411217977;GFI1B:-0.898895381749;ZBTB6:-0.90590435565;CDC5L:-0.907497384869;TFAP4:-0.907788272389;NFE2L2:-0.914384237475;MEF2{A,B,C,D}:-0.920278396234;HOX{A5,B5}:-0.929076907246;RFX1:-0.934863542671;MED-1{core}:-0.978655684091;KLF4:-0.986798903778;DBP:-1.00688267411;SOX17:-1.0303181233;bHLH_family:-1.0368617726;MZF1:-1.04124105802;PRDM1:-1.04216204163;POU5F1:-1.05433009074;FOXD3:-1.06527870746;PAX5:-1.08264668455;TFDP1:-1.08806801909;GATA4:-1.08932470854;ZFP161:-1.12047616095;T:-1.13474377481;MYBL2:-1.158113994;XCPE1{core}:-1.16918497653;EGR1..3:-1.19395266989;GTF2I:-1.2078705768;MAZ:-1.21497228467;POU6F1:-1.23123675136;MTE{core}:-1.30826482809;GZF1:-1.35233288568;EN1,2:-1.42117209091;MTF1:-1.42294556291;HOX{A4,D4}:-1.43777522137;HIC1:-1.49078549518;TEF:-1.51701550233;GTF2A1,2:-1.57066942192;PATZ1:-1.57138513722;TFAP2B:-1.62404704768;RXR{A,B,G}:-1.62529622896;HSF1,2:-1.62887485037;NKX3-2:-1.63038440931;TEAD1:-1.66471077429;TLX1..3_NFIC{dimer}:-1.7220526582;PAX1,9:-1.72911194078;TBP:-1.83556128686;SP1:-1.85138544905;TFAP2{A,C}:-1.86280078236;ZIC1..3:-1.94452333375;XBP1:-1.96219445663;IKZF1:-2.01557957196;FOXL1:-2.14259504052 | ||
|xref= | |||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11793-124C2;search_select_hide=table117:FF:11793-124C2 | |||
}} | }} | ||
Latest revision as of 18:20, 4 June 2020
| Name: | CD4+CD25+CD45RA+ naive regulatory T cells expanded, donor1 |
|---|---|
| Species: | Human (Homo sapiens) |
| Library ID: | CNhs13203 |
| Sample type: | primary cells |
| Genomic View: | UCSC |
| RefEX: | Specific genes |
| FANTOM CAT: | 1, 2, 3, 4, 5, 6, 7 |
| CAGEd-oPOSSUM: | link |
| ZENBU report : | link |
| Additional information | ||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Sample information
RNA information
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| CAGE Accession numbers | ||||||||||||||||||||||||||||||||||||||||||||||
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| Download raw sequence, BAM & CTSS | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs13203
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs13203
| Novel motif | Logo | P-value |
|---|---|---|
| 1 | 1 | 0.106 |
| 10 | 10 | 0.0225 |
| 100 | 100 | 0.859 |
| 101 | 101 | 0.126 |
| 102 | 102 | 0.599 |
| 103 | 103 | 0.0278 |
| 104 | 104 | 0.596 |
| 105 | 105 | 0.178 |
| 106 | 106 | 0.654 |
| 107 | 107 | 0.422 |
| 108 | 108 | 0.803 |
| 109 | 109 | 0.0286 |
| 11 | 11 | 0.0293 |
| 110 | 110 | 0.402 |
| 111 | 111 | 0.213 |
| 112 | 112 | 0.0973 |
| 113 | 113 | 0.757 |
| 114 | 114 | 0.0586 |
| 115 | 115 | 0.142 |
| 116 | 116 | 0.781 |
| 117 | 117 | 0.00196 |
| 118 | 118 | 0.332 |
| 119 | 119 | 0.587 |
| 12 | 12 | 0.467 |
| 120 | 120 | 0.0512 |
| 121 | 121 | 0.882 |
| 122 | 122 | 0.17 |
| 123 | 123 | 0.0327 |
| 124 | 124 | 0.0321 |
| 125 | 125 | 0.611 |
| 126 | 126 | 0.313 |
| 127 | 127 | 0.246 |
| 128 | 128 | 0.916 |
| 129 | 129 | 0.238 |
| 13 | 13 | 0.414 |
| 130 | 130 | 0.909 |
| 131 | 131 | 0.784 |
| 132 | 132 | 0.927 |
| 133 | 133 | 0.0452 |
| 134 | 134 | 0.401 |
| 135 | 135 | 0.862 |
| 136 | 136 | 0.936 |
| 137 | 137 | 0.0717 |
| 138 | 138 | 0.197 |
| 139 | 139 | 0.0546 |
| 14 | 14 | 0.396 |
| 140 | 140 | 0.0511 |
| 141 | 141 | 0.417 |
| 142 | 142 | 0.814 |
| 143 | 143 | 0.00409 |
| 144 | 144 | 0.715 |
| 145 | 145 | 0.265 |
| 146 | 146 | 0.355 |
| 147 | 147 | 0.0371 |
| 148 | 148 | 0.044 |
| 149 | 149 | 0.755 |
| 15 | 15 | 0.086 |
| 150 | 150 | 0.671 |
| 151 | 151 | 0.486 |
| 152 | 152 | 0.615 |
| 153 | 153 | 0.993 |
| 154 | 154 | 0.898 |
| 155 | 155 | 0.00811 |
| 156 | 156 | 0.396 |
| 157 | 157 | 0.0617 |
| 158 | 158 | 0.19 |
| 159 | 159 | 0.287 |
| 16 | 16 | 0.353 |
| 160 | 160 | 0.334 |
| 161 | 161 | 0.126 |
| 162 | 162 | 0.162 |
| 163 | 163 | 0.719 |
| 164 | 164 | 0.139 |
| 165 | 165 | 0.326 |
| 166 | 166 | 0.547 |
| 167 | 167 | 0.208 |
| 168 | 168 | 0.341 |
| 169 | 169 | 0.344 |
| 17 | 17 | 0.83 |
| 18 | 18 | 0.337 |
| 19 | 19 | 0.734 |
| 2 | 2 | 0.875 |
| 20 | 20 | 0.894 |
| 21 | 21 | 0.351 |
| 22 | 22 | 0.797 |
| 23 | 23 | 0.852 |
| 24 | 24 | 0.649 |
| 25 | 25 | 0.116 |
| 26 | 26 | 0.282 |
| 27 | 27 | 0.0901 |
| 28 | 28 | 0.531 |
| 29 | 29 | 0.0121 |
| 3 | 3 | 0.0372 |
| 30 | 30 | 0.315 |
| 31 | 31 | 0.809 |
| 32 | 32 | 0.674 |
| 33 | 33 | 0.303 |
| 34 | 34 | 0.93 |
| 35 | 35 | 0.185 |
| 36 | 36 | 0.0176 |
| 37 | 37 | 0.134 |
| 38 | 38 | 0.397 |
| 39 | 39 | 0.368 |
| 4 | 4 | 0.775 |
| 40 | 40 | 0.335 |
| 41 | 41 | 0.174 |
| 42 | 42 | 0.0981 |
| 43 | 43 | 0.304 |
| 44 | 44 | 0.206 |
| 45 | 45 | 0.771 |
| 46 | 46 | 0.0511 |
| 47 | 47 | 0.00637 |
| 48 | 48 | 0.0509 |
| 49 | 49 | 0.156 |
| 5 | 5 | 0.495 |
| 50 | 50 | 0.65 |
| 51 | 51 | 0.466 |
| 52 | 52 | 0.323 |
| 53 | 53 | 0.478 |
| 54 | 54 | 0.553 |
| 55 | 55 | 0.783 |
| 56 | 56 | 0.487 |
| 57 | 57 | 0.317 |
| 58 | 58 | 0.0817 |
| 59 | 59 | 0.2 |
| 6 | 6 | 0.883 |
| 60 | 60 | 0.424 |
| 61 | 61 | 0.0727 |
| 62 | 62 | 0.0388 |
| 63 | 63 | 0.538 |
| 64 | 64 | 0.163 |
| 65 | 65 | 0.622 |
| 66 | 66 | 0.807 |
| 67 | 67 | 0.714 |
| 68 | 68 | 0.525 |
| 69 | 69 | 0.969 |
| 7 | 7 | 0.227 |
| 70 | 70 | 0.0289 |
| 71 | 71 | 0.0412 |
| 72 | 72 | 0.014 |
| 73 | 73 | 0.509 |
| 74 | 74 | 0.308 |
| 75 | 75 | 0.0124 |
| 76 | 76 | 0.349 |
| 77 | 77 | 0.836 |
| 78 | 78 | 0.0207 |
| 79 | 79 | 0.165 |
| 8 | 8 | 0.547 |
| 80 | 80 | 0.0511 |
| 81 | 81 | 0.408 |
| 82 | 82 | 0.0449 |
| 83 | 83 | 0.751 |
| 84 | 84 | 0.255 |
| 85 | 85 | 0.91 |
| 86 | 86 | 0.147 |
| 87 | 87 | 0.346 |
| 88 | 88 | 0.804 |
| 89 | 89 | 0.974 |
| 9 | 9 | 0.568 |
| 90 | 90 | 0.0224 |
| 91 | 91 | 0.521 |
| 92 | 92 | 0.268 |
| 93 | 93 | 0.127 |
| 94 | 94 | 0.111 |
| 95 | 95 | 0.0208 |
| 96 | 96 | 0.0279 |
| 97 | 97 | 0.319 |
| 98 | 98 | 0.0807 |
| 99 | 99 | 0.069 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs13203
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
EFO:0002091 biological replicate
FF:0000002 in vivo cell sample
FF:0000210 human sample
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
NA
