FF:11835-124G8: Difference between revisions

Latest revision as of 18:22, 4 June 2020

Name:	mesenchymal precursor cell - ovarian cancer metastasis, donor2
Species:	Human (Homo sapiens)
Library ID:	CNhs13093
Sample type:	primary cells
Genomic View:	UCSC
RefEX:	Specific genes
CAGEd-oPOSSUM:	link
ZENBU report :	link

Additional information

Sample information

strain	NA
tissue	ovary
dev stage	NA
sex	NA
age	NA
cell type	mesenchymal precursor cell
cell line	NA
company	NA
collaboration	Claudio Schneider LNCIB
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	NA
catalog number	NA
sample type	total RNA
extraction protocol (Details)	OP-RNA-extraction-totalRNA-TRIzol-ethanol-v1.0

CAGE Accession numbers

Method		Sample accession id
CAGE		SAMD00005040

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs13093		CAGE		DRX008560		DRR009432

Accession ID Hg19

Library id		BAM		CTSS
CNhs13093		DRZ000857		DRZ002242

Accession ID Hg38

Library id		BAM		CTSS
CNhs13093		DRZ012207		DRZ013592

Download raw sequence, BAM & CTSS

Hg19

Fasta	BAM	CTSS
download	download	donwload

Hg38

BAM	CTSS
download	donwload

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

Coexpression cluster	score
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral	0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate	0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural	0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial	0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel	0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS	0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils	0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural	0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis	0.153
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy	0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood	0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate	0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma	-0.284
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial	0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic	0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat	0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal	0
C113-thyroid-throat-lung-lymph-small-colon-trachea	0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma	0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus	0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea	0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal	0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula	0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD19	0
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils	0
C120-immature-salivary-tongue-skin-cervical-CD14-CD34	0
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B	0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal	0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils	0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte	0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus	0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain	0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil	0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP	0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small	0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD4	0
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar	0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin	0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived	0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma	0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis	0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum	0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal	0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic	0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal	0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal	0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen	0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen	0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B	0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair	0.49
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast	0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis	0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal	0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell	0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral	0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal	0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum	0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue	0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small	0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast	0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung	0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular	0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate	0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid	0
C156-plasma-splenic-hereditary-B-large-xeroderma-b	0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea	0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen	0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal	0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain	0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral	0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta	0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon	0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal	0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma	0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial	0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung	0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD4	0
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral	0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma	0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage	0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet	0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye	0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes	0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose	0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils	0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural	0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19	-0.0771
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous	0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus	0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil	0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood	0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle	0.276
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar	0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute	0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt	0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid	0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis	0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid	0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage	0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat	0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen	0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma	0
C190-colon-small-rectum-duodenum-appendix-temporal-oral	0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic	0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD4	0
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD14	0
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar	0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal	0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial	0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival	0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes	0.714
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma	0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast	0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat	0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed	0.0088
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall	0
C202-salivary-skin-penis-tongue-uterus-cervical-immature	0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic	0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD34	0
C205-mycosis-cord-hairy-xeroderma-CD4-B-b	0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary	0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte	0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous	0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen	0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic	0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil	0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney	0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD34	0
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral	0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain	0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature	0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD34	0
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital	0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary	0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum	0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD19	0
C220-Adipocyte-mature-left-breast-skin-liver-adipose	0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular	0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte	-0.0336
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte	0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal	0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal	0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal	0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue	0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult	0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart	0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD14	0
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung	0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis	0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum	0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF7	0
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma	0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas	0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma	0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial	0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell	0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy	0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral	0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal	0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus	-0.54
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach	0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing	0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage	0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic	0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory	0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital	0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast	0.616
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial	0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall	0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD4	0
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue	0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma	0.31
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum	0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris	0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast	0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla	0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral	0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric	0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing	0.182
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole	0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood	0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal	0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms	0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil	0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute	0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8	0
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast	0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear	0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate	0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD4	0
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung	0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth	0.504
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum	0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil	0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast	0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte	0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal	0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal	0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma	0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory	0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial	0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic	0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD4	0
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small	-0.445
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat	0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular	0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus	0.182
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic	0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial	0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal	0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal	0.31
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left	0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart	0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature	0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea	0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal	0.523
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD34	0
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral	0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte	0.409
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed	0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral	0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital	0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood	0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala	0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal	0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils	0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic	0.829
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid	0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole	0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus	0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea	0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory	0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen	0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile	0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula	0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt	0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea	0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms	0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD133	0
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus	0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small	0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal	0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon	0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder	0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature	0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS	0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel	0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix	0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus	0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma	0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas	0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma	0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas	0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma	0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary	0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature	0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma	0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue	0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural	0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H9	0
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic	0.616
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature	0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical	0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b	0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph	0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute	0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic	0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils	0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus	0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung	0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma	0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK	0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast	0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue	0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate	0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left	0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal	0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy	0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral	0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell	0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD8	0
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea	0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal	0.756
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD34	0
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast	0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid	0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD34	0
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic	0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon	0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma	0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma	0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic	0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived	0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic	0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left	0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen	0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair	0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole	0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular	0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma	0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid	0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix	0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain	0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole	0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs13093

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	0.578
MA0003.1	MA0003.1	0.494
MA0004.1	MA0004.1	0.253
MA0006.1	MA0006.1	0.0847
MA0007.1	MA0007.1	0.627
MA0009.1	MA0009.1	0.903
MA0014.1	MA0014.1	0.511
MA0017.1	MA0017.1	0.661
MA0018.2	MA0018.2	2.03108e-4
MA0019.1	MA0019.1	0.474
MA0024.1	MA0024.1	3.22273e-8
MA0025.1	MA0025.1	0.0207
MA0027.1	MA0027.1	0.36
MA0028.1	MA0028.1	1.5489e-4
MA0029.1	MA0029.1	0.63
MA0030.1	MA0030.1	0.0115
MA0031.1	MA0031.1	0.00808
MA0035.2	MA0035.2	0.0598
MA0038.1	MA0038.1	0.00391
MA0039.2	MA0039.2	0.0823
MA0040.1	MA0040.1	0.844
MA0041.1	MA0041.1	0.344
MA0042.1	MA0042.1	0.477
MA0043.1	MA0043.1	2.13607e-4
MA0046.1	MA0046.1	0.0432
MA0047.2	MA0047.2	0.111
MA0048.1	MA0048.1	0.674
MA0050.1	MA0050.1	0.0953
MA0051.1	MA0051.1	0.335
MA0052.1	MA0052.1	0.301
MA0055.1	MA0055.1	0.699
MA0057.1	MA0057.1	0.695
MA0058.1	MA0058.1	0.0426
MA0059.1	MA0059.1	0.724
MA0060.1	MA0060.1	5.96023e-15
MA0061.1	MA0061.1	0.768
MA0062.2	MA0062.2	2.67195e-12
MA0065.2	MA0065.2	0.437
MA0066.1	MA0066.1	0.124
MA0067.1	MA0067.1	0.00592
MA0068.1	MA0068.1	0.775
MA0069.1	MA0069.1	0.05
MA0070.1	MA0070.1	0.429
MA0071.1	MA0071.1	0.611
MA0072.1	MA0072.1	0.21
MA0073.1	MA0073.1	0.418
MA0074.1	MA0074.1	0.224
MA0076.1	MA0076.1	2.9253e-7
MA0077.1	MA0077.1	0.856
MA0078.1	MA0078.1	0.813
MA0079.2	MA0079.2	0.0291
MA0080.2	MA0080.2	2.13838e-8
MA0081.1	MA0081.1	0.00203
MA0083.1	MA0083.1	8.59233e-8
MA0084.1	MA0084.1	0.81
MA0087.1	MA0087.1	0.356
MA0088.1	MA0088.1	0.216
MA0090.1	MA0090.1	0.0123
MA0091.1	MA0091.1	0.0251
MA0092.1	MA0092.1	0.113
MA0093.1	MA0093.1	0.279
MA0099.2	MA0099.2	0.0762
MA0100.1	MA0100.1	0.139
MA0101.1	MA0101.1	0.744
MA0102.2	MA0102.2	0.217
MA0103.1	MA0103.1	0.0487
MA0104.2	MA0104.2	0.00822
MA0105.1	MA0105.1	0.251
MA0106.1	MA0106.1	0.139
MA0107.1	MA0107.1	0.837
MA0108.2	MA0108.2	5.72201e-4
MA0111.1	MA0111.1	0.855
MA0112.2	MA0112.2	0.0048
MA0113.1	MA0113.1	0.619
MA0114.1	MA0114.1	0.636
MA0115.1	MA0115.1	0.0774
MA0116.1	MA0116.1	0.881
MA0117.1	MA0117.1	0.21
MA0119.1	MA0119.1	0.0955
MA0122.1	MA0122.1	0.882
MA0124.1	MA0124.1	0.257
MA0125.1	MA0125.1	0.153
MA0131.1	MA0131.1	0.129
MA0135.1	MA0135.1	0.13
MA0136.1	MA0136.1	5.00458e-12
MA0137.2	MA0137.2	0.00173
MA0138.2	MA0138.2	0.949
MA0139.1	MA0139.1	0.776
MA0140.1	MA0140.1	0.144
MA0141.1	MA0141.1	0.306
MA0142.1	MA0142.1	0.0857
MA0143.1	MA0143.1	0.966
MA0144.1	MA0144.1	0.576
MA0145.1	MA0145.1	0.204
MA0146.1	MA0146.1	0.79
MA0147.1	MA0147.1	0.0325
MA0148.1	MA0148.1	0.116
MA0149.1	MA0149.1	0.761
MA0150.1	MA0150.1	0.993
MA0152.1	MA0152.1	0.0738
MA0153.1	MA0153.1	0.27
MA0154.1	MA0154.1	0.494
MA0155.1	MA0155.1	0.133
MA0156.1	MA0156.1	4.50367e-9
MA0157.1	MA0157.1	0.115
MA0159.1	MA0159.1	0.362
MA0160.1	MA0160.1	0.123
MA0162.1	MA0162.1	0.0248
MA0163.1	MA0163.1	0.0637
MA0164.1	MA0164.1	0.505
MA0258.1	MA0258.1	0.123
MA0259.1	MA0259.1	0.316

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs13093

Novel motif	Logo	P-value
1	1	0.812
10	10	0.954
100	100	0.846
101	101	0.832
102	102	0.536
103	103	0.592
104	104	0.823
105	105	0.106
106	106	9.29043e-4
107	107	0.016
108	108	0.0504
109	109	0.779
11	11	0.68
110	110	0.458
111	111	0.849
112	112	0.132
113	113	0.809
114	114	0.235
115	115	0.203
116	116	0.0898
117	117	0.816
118	118	0.852
119	119	0.627
12	12	0.594
120	120	0.176
121	121	0.757
122	122	0.00433
123	123	0.423
124	124	0.34
125	125	0.274
126	126	0.848
127	127	0.574
128	128	0.231
129	129	0.291
13	13	0.51
130	130	0.0606
131	131	0.614
132	132	0.376
133	133	0.764
134	134	0.542
135	135	0.564
136	136	0.645
137	137	0.113
138	138	0.475
139	139	0.679
14	14	0.134
140	140	0.283
141	141	0.672
142	142	0.397
143	143	0.313
144	144	0.501
145	145	0.237
146	146	0.445
147	147	0.111
148	148	0.683
149	149	0.121
15	15	0.952
150	150	0.227
151	151	0.629
152	152	0.0253
153	153	0.233
154	154	0.797
155	155	0.136
156	156	0.791
157	157	0.87
158	158	0.255
159	159	0.874
16	16	0.122
160	160	0.421
161	161	0.667
162	162	0.113
163	163	0.155
164	164	0.0719
165	165	0.618
166	166	0.0526
167	167	0.653
168	168	0.863
169	169	0.0411
17	17	0.211
18	18	0.101
19	19	0.0441
2	2	0.36
20	20	0.363
21	21	0.128
22	22	0.553
23	23	0.0453
24	24	0.395
25	25	0.0271
26	26	0.48
27	27	0.476
28	28	0.163
29	29	0.43
3	3	0.6
30	30	0.66
31	31	0.813
32	32	8.55417e-11
33	33	0.83
34	34	0.763
35	35	0.604
36	36	0.0979
37	37	0.0493
38	38	0.441
39	39	0.186
4	4	0.76
40	40	0.675
41	41	0.632
42	42	0.243
43	43	0.817
44	44	0.491
45	45	0.973
46	46	0.226
47	47	0.879
48	48	0.71
49	49	0.98
5	5	0.74
50	50	0.435
51	51	0.892
52	52	0.601
53	53	0.302
54	54	0.671
55	55	0.128
56	56	0.867
57	57	0.43
58	58	0.387
59	59	0.298
6	6	0.551
60	60	0.595
61	61	0.619
62	62	0.939
63	63	0.291
64	64	0.615
65	65	0.631
66	66	0.0281
67	67	0.508
68	68	0.972
69	69	0.986
7	7	0.0645
70	70	0.0641
71	71	0.293
72	72	0.326
73	73	0.023
74	74	0.165
75	75	0.821
76	76	0.871
77	77	0.0633
78	78	0.859
79	79	1.89779e-4
8	8	0.218
80	80	0.48
81	81	0.743
82	82	0.522
83	83	0.197
84	84	0.617
85	85	0.0321
86	86	0.986
87	87	0.583
88	88	0.709
89	89	0.193
9	9	0.718
90	90	0.858
91	91	0.695
92	92	0.279
93	93	0.889
94	94	0.362
95	95	0.608
96	96	0.734
97	97	0.513
98	98	0.696
99	99	0.0129

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs13093

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
EFO:0002091 biological replicate
FF:0000274 human mesenchymal precursor cell- ovarian cancer-metastasis sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000723 (somatic stem cell)
0000048 (multi fate stem cell)
0000548 (animal cell)
0002320 (connective tissue cell)
0002371 (somatic cell)
0000219 (motile cell)
0000134 (mesenchymal cell)
0000255 (eukaryotic cell)
0000034 (stem cell)

DOID: Disease
4 (disease)
0050686 (organ system cancer)
162 (cancer)
14566 (disease of cellular proliferation)
193 (reproductive organ cancer)
2394 (ovarian cancer)
120 (female reproductive organ cancer)

UBERON: Anatomy
0002384 (connective tissue)
0000479 (tissue)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0001062 (anatomical entity)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000272 (human ovarian cancer mesenchymal precursor cell sample)
0000274 (human mesenchymal precursor cell- ovarian cancer-metastasis sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
CL:0000134 (mesenchymal cell)

@@ Line 1: / Line 1: @@
 {{f5samples
-|DRA_sample_Accession=CAGE@DRS008452
+|DRA_sample_Accession=CAGE@SAMD00005040
-|accession_numbers=CAGE;DRX008560;DRR009432;DRZ000857;DRZ002242
+|accession_numbers=CAGE;DRX008560;DRR009432;DRZ000857;DRZ002242;DRZ012207;DRZ013592
 |ancestors_in_anatomy_facet=UBERON:0002384,UBERON:0000479,UBERON:0000061,UBERON:0000465,UBERON:0001062
 |ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000723,CL:0000048,CL:0000548,CL:0002320,CL:0002371,CL:0000219,CL:0000134,CL:0000255,CL:0000034
@@ Line 9: / Line 9: @@
 |created_by=
 |creation_date=
-|datafreeze_phase=1
+|data_phase=2
+|datafreeze_phase=2
 |def=
 |expression_enrichment_score=chr2:114036488..114036504,-!p1@PAX8!1.41!24.52!PAX8;;chr12:66218598..66218645,+!p2@HMGA2!1.23!72.52!HMGA2;;chr20:55204351..55204377,+!p1@TFAP2C!1.22!19.83!TFAP2C;;chr11:46299199..46299233,+!p1@CREB3L1!1.15!67.83!CREB3L1;;chr15:83953397..83953425,-!p1@BNC1!1.15!15.13!BNC1;;chr2:176969228..176969260,+!p1@HOXD11!1.15!13.04!HOXD11;;chr2:176973498..176973524,+!p1@HOXD10!1.15!13.04!HOXD10;;chr7:27224842..27224872,-!p1@HOXA11!1.13!12.52!HOXA11;;chr1:170632285..170632309,+!p1@PRRX1!1.10!13.04!PRRX1;;chr19:42636586..42636607,-!p1@POU2F2!1.09!31.83!POU2F2;;chr12:66218255..66218304,+!p3@HMGA2!1.09!30.26!HMGA2;;chr7:44143925..44143970,+!p1@AEBP1!1.08!246.79!AEBP1;;chr7:27224795..27224840,-!p2@HOXA11!1.08!10.96!HOXA11;;chr17:59477233..59477263,+!p1@TBX2!1.07!33.39!TBX2;;chr19:45971246..45971265,+!p1@FOSB!1.06!196.18!FOSB;;chr17:41739283..41739297,-!p1@MEOX1!1.06!10.43!MEOX1;;chr2:176969179..176969226,+!p2@HOXD11!1.06!10.43!HOXD11;;chr7:44143978..44143989,+!p2@AEBP1!1.02!17.74!AEBP1;;chr6:106534192..106534224,+!p1@PRDM1!1.00!26.09!PRDM1;;chr12:66218836..66218888,+!p1@HMGA2!0.99!83.48!HMGA2;;chr3:141087393..141087426,+!p3@ZBTB38!0.99!36.00!ZBTB38;;chr11:61520075..61520136,+!p1@C11orf9!0.99!18.78!C11orf9;;chr16:86544113..86544145,+!p1@FOXF1!0.99!10.96!FOXF1;;chr3:138665937..138665968,-!p1@FOXL2!0.97!8.35!FOXL2;;chr3:25470156..25470227,+!p2@RARB!0.97!8.35!RARB;;chr7:1577899..1577943,+!p3@MAFK!0.97!8.35!MAFK;;chr17:1959369..1959388,+!p2@HIC1!0.96!21.91!HIC1;;chr8:72756063..72756125,-!p1@MSC!0.96!16.70!MSC;;chr11:46299539..46299620,+!p2@CREB3L1!0.96!14.09!CREB3L1;;chr1:170632959..170632987,+!p4@PRRX1!0.96!8.87!PRRX1;;chr10:64576105..64576133,-!p1@EGR2!0.95!16.70!EGR2;;chr3:25469724..25469773,+!p1@RARB!0.95!11.48!RARB;;chr15:96869114..96869160,+!p11@NR2F2!0.95!10.96!NR2F2;;chr17:46132044..46132080,+!p4@NFE2L1!0.95!7.83!NFE2L1;;chr8:55370487..55370503,+!p1@SOX17!0.92!7.30!SOX17;;chr1:170633348..170633399,+!p2@PRRX1!0.91!9.91!PRRX1;;chr20:50179368..50179392,-!p2@NFATC2!0.91!9.39!NFATC2;;chr7:44143997..44144008,+!p3@AEBP1!0.90!8.87!AEBP1;;chr12:115122005..115122016,-!p3@TBX3!0.90!8.35!TBX3;;chr5:92918919..92918942,+!p1@NR2F1!0.89!31.83!NR2F1;;chr15:96869255..96869291,+!p6@NR2F2!0.89!12.52!NR2F2;;chr15:96869222..96869251,+!p18@NR2F2!0.88!7.83!NR2F2;;chr15:96869165..96869183,+!p20@NR2F2!0.86!6.26!NR2F2;;chr12:26277817..26277863,-!p2@BHLHE41!0.85!8.35!BHLHE41;;chr12:115121962..115121987,-!p1@TBX3!0.84!53.74!TBX3;;chr17:59477275..59477286,+!p3@TBX2!0.83!7.83!TBX2;;chr7:27205136..27205164,-!p1@HOXA9!0.83!5.74!HOXA9;;chr2:176969097..176969109,+!p3@HOXD11!0.83!5.74!HOXD11;;chr19:46801639..46801699,+!p1@HIF3A!0.83!5.74!HIF3A;;chr10:119303078..119303169,+!p2@EMX2!0.83!5.74!EMX2;;chr12:54410664..54410684,+!p1@HOXC4,p1@HOXC5,p1@HOXC6!0.83!5.74!HOXC5;;chr10:63809106..63809127,+!p1@ARID5B!0.82!80.87!ARID5B;;chr8:49833948..49833973,-!p2@SNAI2!0.82!38.09!SNAI2;;chr2:239756671..239756732,+!p1@TWIST2!0.82!19.30!TWIST2;;chr15:57511609..57511651,+!p2@TCF12!0.82!9.91!TCF12;;chr10:63809077..63809089,+!p5@ARID5B!0.81!12.52!ARID5B;;chr17:41622925..41622976,-!p3@ETV4!0.81!8.35!ETV4;;chr3:141105705..141105770,+!p4@ZBTB38!0.81!6.78!ZBTB38;;chr18:19749386..19749404,+!p2@GATA6!0.80!7.83!GATA6;;chr2:176994919..176994931,+!p2@HOXD8!0.79!5.22!HOXD8;;chr2:177001290..177001315,+!p1@HOXD3!0.79!5.22!HOXD3;;chr7:27192185..27192209,-!p1@HOXA3!0.79!5.22!HOXA3;;chr12:115121770..115121781,-!p4@TBX3!0.79!5.22!TBX3;;chr9:35732647..35732678,+!p2@CREB3!0.78!30.26!CREB3;;chr20:50721803..50721857,-!p2@ZFP64!0.76!7.83!ZFP64;;chr17:41622731..41622764,-!p5@ETV4!0.76!4.70!ETV4;;chr2:176981499..176981522,+!p2@HOXD10!0.76!4.70!HOXD10;;chr4:174450089..174450153,-!p2@HAND2!0.76!4.70!HAND2;;chr12:54394309..54394336,+!p2@HOXC9!0.76!4.70!HOXC9;;chr22:38598086..38598105,+!p1@MAFF!0.75!54.26!MAFF;;chr12:66218183..66218209,+!p4@HMGA2!0.75!9.39!HMGA2;;chr2:239756739..239756755,+!p2@TWIST2!0.75!8.35!TWIST2;;chr3:141121847..141121868,+!p5@ZBTB38!0.75!7.30!ZBTB38;;chr17:41622765..41622821,-!p2@ETV4!0.75!7.30!ETV4;;chr8:49833978..49833996,-!p1@SNAI2!0.74!102.26!SNAI2;;chr8:72756667..72756736,-!p2@MSC!0.74!7.30!MSC;;chr6:106534230..106534254,+!p2@PRDM1!0.73!12.00!PRDM1;;chr15:96874244..96874259,+!p5@NR2F2!0.73!11.48!NR2F2;;chr1:151032860..151032918,+!p1@MLLT11!0.71!55.30!MLLT11;;chr14:62162285..62162296,+!p3@HIF1A!0.71!24.00!HIF1A;;chr2:176994408..176994492,+!p1@HOXD8!0.71!4.17!HOXD8;;chr7:27205106..27205134,-!p2@HOXA9!0.71!4.17!HOXA9;;chr1:170632723..170632739,+!p8@PRRX1!0.71!4.17!PRRX1;;chr17:1958388..1958404,+!p1@HIC1!0.70!29.22!HIC1;;chr11:65687362..65687436,+!p3@DRAP1!0.70!20.35!DRAP1;;chr11:65686732..65686756,+!p2@DRAP1!0.70!18.78!DRAP1;;chr18:19749541..19749557,+!p1@GATA6!0.70!14.09!GATA6;;chr15:96874145..96874166,+!p7@NR2F2!0.70!8.35!NR2F2;;chr8:72756267..72756296,-!p4@MSC!0.70!6.26!MSC;;chr1:170633262..170633285,+!p3@PRRX1!0.70!4.70!PRRX1;;chr19:45908292..45908374,-!p1@PPP1R13L!0.69!39.65!PPP1R13L;;chr11:65686802..65686818,+!p6@DRAP1!0.69!7.30!DRAP1;;chr17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@@ Line 40: / Line 41: @@
 |fonse_treatment_closure=
 |has_quality=
+|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/mesenchymal%2520precursor%2520cell%2520-%2520ovarian%2520cancer%2520metastasis%252c%2520donor2.CNhs13093.11835-124G8.hg19.nobarcode.bam
+|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/mesenchymal%2520precursor%2520cell%2520-%2520ovarian%2520cancer%2520metastasis%252c%2520donor2.CNhs13093.11835-124G8.hg19.ctss.bed.gz
+|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/mesenchymal%2520precursor%2520cell%2520-%2520ovarian%2520cancer%2520metastasis%252c%2520donor2.CNhs13093.11835-124G8.hg19.nobarcode.rdna.fa.gz
+|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/mesenchymal%2520precursor%2520cell%2520-%2520ovarian%2520cancer%2520metastasis%252c%2520donor2.CNhs13093.11835-124G8.hg38.nobarcode.bam
+|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/mesenchymal%2520precursor%2520cell%2520-%2520ovarian%2520cancer%2520metastasis%252c%2520donor2.CNhs13093.11835-124G8.hg38.nobarcode.ctss.bed.gz
 |id=FF:11835-124G8
 |is_a=EFO:0002091;;FF:0000274
 |is_obsolete=
 |library_id=CNhs13093
-|library_ids=CNhs13093
+|library_id_phase_based=2:CNhs13093
+|microRNAs=
+|microRNAs_nn=
+|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11835
+|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11835
 |name=mesenchymal precursor cell - ovarian cancer metastasis, donor2
 |namespace=
@@ Line 50: / Line 60: @@
 |profile_cagescan=,,,
 |profile_hcage=CNhs13093,LSID1001,release013,COMPLETED
-|profile_rnaseq=,,,
+|profile_rnaseq=
 |profile_srnaseq=,,,
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+|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11835-124G8;search_select_hide=table117:FF:11835-124G8
 }}

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FF:11835-124G8: Difference between revisions

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Latest revision as of 18:22, 4 June 2020

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	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0