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{{f5samples
{{f5samples
|id=FF:11835-124G8
|DRA_sample_Accession=CAGE@SAMD00005040
|name=mesenchymal precursor cell - ovarian cancer metastasis, donor2
|accession_numbers=CAGE;DRX008560;DRR009432;DRZ000857;DRZ002242;DRZ012207;DRZ013592
|sample_id=11835
|ancestors_in_anatomy_facet=UBERON:0002384,UBERON:0000479,UBERON:0000061,UBERON:0000465,UBERON:0001062
|rna_tube_id=
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000723,CL:0000048,CL:0000548,CL:0002320,CL:0002371,CL:0000219,CL:0000134,CL:0000255,CL:0000034
|rna_box=124
|ancestors_in_disease_facet=DOID:4,DOID:0050686,DOID:162,DOID:14566,DOID:193,DOID:2394,DOID:120
|rna_position=G8
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000001,FF:0000272,FF:0000274
|sample_cell_lot=SOC-41-meta
|comment=
|sample_cell_catalog=
|created_by=
|sample_company=
|creation_date=
|rna_lot_number=
|data_phase=2
|rna_catalog_number=
|datafreeze_phase=2
|sample_species=Human (Homo sapiens)
|def=
|sample_strain=
|expression_enrichment_score=chr2:114036488..114036504,-!p1@PAX8!1.41!24.52!PAX8;;chr12:66218598..66218645,+!p2@HMGA2!1.23!72.52!HMGA2;;chr20:55204351..55204377,+!p1@TFAP2C!1.22!19.83!TFAP2C;;chr11:46299199..46299233,+!p1@CREB3L1!1.15!67.83!CREB3L1;;chr15:83953397..83953425,-!p1@BNC1!1.15!15.13!BNC1;;chr2:176969228..176969260,+!p1@HOXD11!1.15!13.04!HOXD11;;chr2:176973498..176973524,+!p1@HOXD10!1.15!13.04!HOXD10;;chr7:27224842..27224872,-!p1@HOXA11!1.13!12.52!HOXA11;;chr1:170632285..170632309,+!p1@PRRX1!1.10!13.04!PRRX1;;chr19:42636586..42636607,-!p1@POU2F2!1.09!31.83!POU2F2;;chr12:66218255..66218304,+!p3@HMGA2!1.09!30.26!HMGA2;;chr7:44143925..44143970,+!p1@AEBP1!1.08!246.79!AEBP1;;chr7:27224795..27224840,-!p2@HOXA11!1.08!10.96!HOXA11;;chr17:59477233..59477263,+!p1@TBX2!1.07!33.39!TBX2;;chr19:45971246..45971265,+!p1@FOSB!1.06!196.18!FOSB;;chr17:41739283..41739297,-!p1@MEOX1!1.06!10.43!MEOX1;;chr2:176969179..176969226,+!p2@HOXD11!1.06!10.43!HOXD11;;chr7:44143978..44143989,+!p2@AEBP1!1.02!17.74!AEBP1;;chr6:106534192..106534224,+!p1@PRDM1!1.00!26.09!PRDM1;;chr12:66218836..66218888,+!p1@HMGA2!0.99!83.48!HMGA2;;chr3:141087393..141087426,+!p3@ZBTB38!0.99!36.00!ZBTB38;;chr11:61520075..61520136,+!p1@C11orf9!0.99!18.78!C11orf9;;chr16:86544113..86544145,+!p1@FOXF1!0.99!10.96!FOXF1;;chr3:138665937..138665968,-!p1@FOXL2!0.97!8.35!FOXL2;;chr3:25470156..25470227,+!p2@RARB!0.97!8.35!RARB;;chr7:1577899..1577943,+!p3@MAFK!0.97!8.35!MAFK;;chr17:1959369..1959388,+!p2@HIC1!0.96!21.91!HIC1;;chr8:72756063..72756125,-!p1@MSC!0.96!16.70!MSC;;chr11:46299539..46299620,+!p2@CREB3L1!0.96!14.09!CREB3L1;;chr1:170632959..170632987,+!p4@PRRX1!0.96!8.87!PRRX1;;chr10:64576105..64576133,-!p1@EGR2!0.95!16.70!EGR2;;chr3:25469724..25469773,+!p1@RARB!0.95!11.48!RARB;;chr15:96869114..96869160,+!p11@NR2F2!0.95!10.96!NR2F2;;chr17:46132044..46132080,+!p4@NFE2L1!0.95!7.83!NFE2L1;;chr8:55370487..55370503,+!p1@SOX17!0.92!7.30!SOX17;;chr1:170633348..170633399,+!p2@PRRX1!0.91!9.91!PRRX1;;chr20:50179368..50179392,-!p2@NFATC2!0.91!9.39!NFATC2;;chr7:44143997..44144008,+!p3@AEBP1!0.90!8.87!AEBP1;;chr12:115122005..115122016,-!p3@TBX3!0.90!8.35!TBX3;;chr5:92918919..92918942,+!p1@NR2F1!0.89!31.83!NR2F1;;chr15:96869255..96869291,+!p6@NR2F2!0.89!12.52!NR2F2;;chr15:96869222..96869251,+!p18@NR2F2!0.88!7.83!NR2F2;;chr15:96869165..96869183,+!p20@NR2F2!0.86!6.26!NR2F2;;chr12:26277817..26277863,-!p2@BHLHE41!0.85!8.35!BHLHE41;;chr12:115121962..115121987,-!p1@TBX3!0.84!53.74!TBX3;;chr17:59477275..59477286,+!p3@TBX2!0.83!7.83!TBX2;;chr7:27205136..27205164,-!p1@HOXA9!0.83!5.74!HOXA9;;chr2:176969097..176969109,+!p3@HOXD11!0.83!5.74!HOXD11;;chr19:46801639..46801699,+!p1@HIF3A!0.83!5.74!HIF3A;;chr10:119303078..119303169,+!p2@EMX2!0.83!5.74!EMX2;;chr12:54410664..54410684,+!p1@HOXC4,p1@HOXC5,p1@HOXC6!0.83!5.74!HOXC5;;chr10:63809106..63809127,+!p1@ARID5B!0.82!80.87!ARID5B;;chr8:49833948..49833973,-!p2@SNAI2!0.82!38.09!SNAI2;;chr2:239756671..239756732,+!p1@TWIST2!0.82!19.30!TWIST2;;chr15:57511609..57511651,+!p2@TCF12!0.82!9.91!TCF12;;chr10:63809077..63809089,+!p5@ARID5B!0.81!12.52!ARID5B;;chr17:41622925..41622976,-!p3@ETV4!0.81!8.35!ETV4;;chr3:141105705..141105770,+!p4@ZBTB38!0.81!6.78!ZBTB38;;chr18:19749386..19749404,+!p2@GATA6!0.80!7.83!GATA6;;chr2:176994919..176994931,+!p2@HOXD8!0.79!5.22!HOXD8;;chr2:177001290..177001315,+!p1@HOXD3!0.79!5.22!HOXD3;;chr7:27192185..27192209,-!p1@HOXA3!0.79!5.22!HOXA3;;chr12:115121770..115121781,-!p4@TBX3!0.79!5.22!TBX3;;chr9:35732647..35732678,+!p2@CREB3!0.78!30.26!CREB3;;chr20:50721803..50721857,-!p2@ZFP64!0.76!7.83!ZFP64;;chr17:41622731..41622764,-!p5@ETV4!0.76!4.70!ETV4;;chr2:176981499..176981522,+!p2@HOXD10!0.76!4.70!HOXD10;;chr4:174450089..174450153,-!p2@HAND2!0.76!4.70!HAND2;;chr12:54394309..54394336,+!p2@HOXC9!0.76!4.70!HOXC9;;chr22:38598086..38598105,+!p1@MAFF!0.75!54.26!MAFF;;chr12:66218183..66218209,+!p4@HMGA2!0.75!9.39!HMGA2;;chr2:239756739..239756755,+!p2@TWIST2!0.75!8.35!TWIST2;;chr3:141121847..141121868,+!p5@ZBTB38!0.75!7.30!ZBTB38;;chr17:41622765..41622821,-!p2@ETV4!0.75!7.30!ETV4;;chr8:49833978..49833996,-!p1@SNAI2!0.74!102.26!SNAI2;;chr8:72756667..72756736,-!p2@MSC!0.74!7.30!MSC;;chr6:106534230..106534254,+!p2@PRDM1!0.73!12.00!PRDM1;;chr15:96874244..96874259,+!p5@NR2F2!0.73!11.48!NR2F2;;chr1:151032860..151032918,+!p1@MLLT11!0.71!55.30!MLLT11;;chr14:62162285..62162296,+!p3@HIF1A!0.71!24.00!HIF1A;;chr2:176994408..176994492,+!p1@HOXD8!0.71!4.17!HOXD8;;chr7:27205106..27205134,-!p2@HOXA9!0.71!4.17!HOXA9;;chr1:170632723..170632739,+!p8@PRRX1!0.71!4.17!PRRX1;;chr17:1958388..1958404,+!p1@HIC1!0.70!29.22!HIC1;;chr11:65687362..65687436,+!p3@DRAP1!0.70!20.35!DRAP1;;chr11:65686732..65686756,+!p2@DRAP1!0.70!18.78!DRAP1;;chr18:19749541..19749557,+!p1@GATA6!0.70!14.09!GATA6;;chr15:96874145..96874166,+!p7@NR2F2!0.70!8.35!NR2F2;;chr8:72756267..72756296,-!p4@MSC!0.70!6.26!MSC;;chr1:170633262..170633285,+!p3@PRRX1!0.70!4.70!PRRX1;;chr19:45908292..45908374,-!p1@PPP1R13L!0.69!39.65!PPP1R13L;;chr11:65686802..65686818,+!p6@DRAP1!0.69!7.30!DRAP1;;chr17: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|sample_dev_stage=
|ffid_belonging_in_development=CL:0000134
|sample_tissue=ovary
|sample_donor(cell lot)=
|sample_sex=
|sample_age=
|sample_ethnicity=
|rna_rin=
|rna_od260/230=1.71000
|rna_od260/280=2.03000
|sample_cell_type=mesenchymal precursor cell
|sample_cell_line=
|sample_collaboration=Claudio Schneider LNCIB
|sample_experimental_condition=
|sample_disease=
|rna_sample_type=total RNA
|rna_extraction_protocol=OP-RNA-extraction-totalRNA-TRIzol-ethanol-v1.0
|rna_weight_ug=14.32655
|rna_concentration=0.40933
|sample_note=
|profile_hcage=CNhs13093,LSID1001,,SEQUENCING QUEUE
|profile_cagescan=,,,
|profile_srnaseq=,,,
|profile_rnaseq=,,,
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000004,CL:0000012,CL:0000034,CL:0000048,CL:0000063,CL:0000134,CL:0000144,CL:0000219,CL:0000255,CL:0000548,CL:0000723,CL:0002320,CL:0002371
|ancestors_in_anatomy_facet=UBERON:0000061,UBERON:0000465,UBERON:0000479,UBERON:0001062,UBERON:0002384
|ancestors_in_disease_facet=DOID:0050686,DOID:120,DOID:14566,DOID:162,DOID:193,DOID:2394,DOID:4
|sample_description=
 
|fonse_cell_line=
|fonse_cell_line=
|fonse_cell_line_closure=
|fonse_cell_line_closure=
Line 67: Line 40:
|fonse_treatment=
|fonse_treatment=
|fonse_treatment_closure=
|fonse_treatment_closure=
|has_quality=
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/mesenchymal%2520precursor%2520cell%2520-%2520ovarian%2520cancer%2520metastasis%252c%2520donor2.CNhs13093.11835-124G8.hg19.nobarcode.bam
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/mesenchymal%2520precursor%2520cell%2520-%2520ovarian%2520cancer%2520metastasis%252c%2520donor2.CNhs13093.11835-124G8.hg19.ctss.bed.gz
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/mesenchymal%2520precursor%2520cell%2520-%2520ovarian%2520cancer%2520metastasis%252c%2520donor2.CNhs13093.11835-124G8.hg19.nobarcode.rdna.fa.gz
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/mesenchymal%2520precursor%2520cell%2520-%2520ovarian%2520cancer%2520metastasis%252c%2520donor2.CNhs13093.11835-124G8.hg38.nobarcode.bam
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/mesenchymal%2520precursor%2520cell%2520-%2520ovarian%2520cancer%2520metastasis%252c%2520donor2.CNhs13093.11835-124G8.hg38.nobarcode.ctss.bed.gz
|id=FF:11835-124G8
|is_a=EFO:0002091;;FF:0000274
|is_obsolete=
|library_id=CNhs13093
|library_id_phase_based=2:CNhs13093
|microRNAs=
|microRNAs_nn=
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11835
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11835
|name=mesenchymal precursor cell - ovarian cancer metastasis, donor2
|namespace=
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|profile_hcage=CNhs13093,LSID1001,release013,COMPLETED
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|rna_box=124
|rna_catalog_number=
|rna_concentration=0.40933
|rna_extraction_protocol=OP-RNA-extraction-totalRNA-TRIzol-ethanol-v1.0
|rna_lot_number=
|rna_od260/230=1.71
|rna_od260/280=2.03
|rna_position=G8
|rna_rin=
|rna_sample_type=total RNA
|rna_tube_id=124G8
|rna_weight_ug=14.32655
|sample_age=
|sample_category=primary cells
|sample_cell_catalog=
|sample_cell_line=
|sample_cell_lot=SOC-41-meta
|sample_cell_type=mesenchymal precursor cell
|sample_collaboration=Claudio Schneider LNCIB
|sample_company=
|sample_description=
|sample_dev_stage=
|sample_disease=
|sample_donor(cell lot)=
|sample_ethnicity=
|sample_experimental_condition=
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;1.75336355453635e-220!GO:0005737;cytoplasm;4.07879331401982e-185!GO:0043226;organelle;4.78274067911256e-146!GO:0043229;intracellular organelle;8.56189782923028e-146!GO:0043231;intracellular membrane-bound organelle;2.05723168162603e-141!GO:0043227;membrane-bound organelle;4.01604066258158e-141!GO:0044444;cytoplasmic part;9.21036089974648e-137!GO:0044422;organelle part;5.04804466354071e-113!GO:0044446;intracellular organelle part;1.14305108744078e-111!GO:0005515;protein binding;2.78997582584181e-83!GO:0032991;macromolecular complex;9.60555256350684e-77!GO:0030529;ribonucleoprotein complex;6.77598333003618e-66!GO:0044238;primary metabolic process;1.27460762018684e-64!GO:0044237;cellular metabolic process;6.72413318260402e-63!GO:0043170;macromolecule metabolic process;3.06717989961069e-59!GO:0043233;organelle lumen;1.54723438507613e-53!GO:0031974;membrane-enclosed lumen;1.54723438507613e-53!GO:0031090;organelle membrane;2.92500211498445e-53!GO:0005739;mitochondrion;4.48302143711855e-52!GO:0003723;RNA binding;6.5557744169134e-50!GO:0019538;protein metabolic process;1.03124427075751e-49!GO:0044428;nuclear part;4.10745792614897e-47!GO:0044260;cellular macromolecule metabolic process;9.16985336607906e-45!GO:0006412;translation;4.78505774628724e-44!GO:0044267;cellular protein metabolic process;7.38113535924919e-44!GO:0016043;cellular component organization and biogenesis;2.3304750912575e-42!GO:0015031;protein transport;3.78736254001904e-42!GO:0033036;macromolecule localization;5.15001801186725e-42!GO:0005840;ribosome;5.24694398837543e-42!GO:0045184;establishment of protein localization;1.78040180157856e-39!GO:0043234;protein complex;2.39203101572808e-39!GO:0008104;protein localization;2.47394428795711e-39!GO:0005634;nucleus;9.39632779675664e-39!GO:0009058;biosynthetic process;1.83399729544091e-38!GO:0003735;structural constituent of ribosome;5.1272456131857e-38!GO:0005829;cytosol;7.06812170623572e-38!GO:0009059;macromolecule biosynthetic process;2.41219111246522e-37!GO:0044429;mitochondrial part;1.11265691156163e-35!GO:0033279;ribosomal subunit;2.42723509098164e-34!GO:0044249;cellular biosynthetic process;7.40428556386778e-34!GO:0006396;RNA processing;1.17565185804342e-33!GO:0046907;intracellular transport;9.14710494128833e-33!GO:0031967;organelle envelope;1.29621573904781e-32!GO:0031975;envelope;2.2220014803723e-32!GO:0031981;nuclear lumen;7.37648000026258e-30!GO:0016071;mRNA metabolic process;1.22800854276017e-27!GO:0006886;intracellular protein transport;1.23155473164868e-27!GO:0043283;biopolymer metabolic process;8.22049143050444e-27!GO:0005830;cytosolic ribosome (sensu Eukaryota);1.78138204632595e-26!GO:0005783;endoplasmic reticulum;1.92434586078081e-26!GO:0008380;RNA splicing;7.50896432351634e-26!GO:0010467;gene expression;5.32762920291153e-25!GO:0012505;endomembrane system;1.01823822251153e-24!GO:0005740;mitochondrial envelope;3.86989507552674e-24!GO:0006397;mRNA processing;6.33125414111836e-24!GO:0031966;mitochondrial membrane;5.06711809130221e-23!GO:0022613;ribonucleoprotein complex biogenesis and assembly;6.3419325897705e-23!GO:0006996;organelle organization and biogenesis;7.19419602847255e-23!GO:0065003;macromolecular complex assembly;1.08877051025419e-22!GO:0019866;organelle inner membrane;6.35589602430631e-22!GO:0044445;cytosolic part;1.16120530944765e-21!GO:0006119;oxidative phosphorylation;3.93337777528094e-21!GO:0005743;mitochondrial inner membrane;1.19600999574891e-20!GO:0022607;cellular component assembly;1.54626148317318e-20!GO:0043228;non-membrane-bound organelle;1.94511941511528e-20!GO:0043232;intracellular non-membrane-bound organelle;1.94511941511528e-20!GO:0048770;pigment granule;2.6451580444252e-20!GO:0042470;melanosome;2.6451580444252e-20!GO:0051649;establishment of cellular localization;3.00154527409481e-20!GO:0044432;endoplasmic reticulum part;3.63296970426165e-20!GO:0051641;cellular localization;3.77566243383738e-20!GO:0006457;protein folding;5.26742347183779e-20!GO:0005794;Golgi apparatus;9.26759442418876e-19!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;1.1568431410617e-18!GO:0005681;spliceosome;1.62498224096781e-18!GO:0044455;mitochondrial membrane part;3.00482300357177e-18!GO:0015934;large ribosomal subunit;3.71702950047229e-18!GO:0005654;nucleoplasm;6.52396852731784e-18!GO:0015935;small ribosomal subunit;3.97085305009126e-17!GO:0016462;pyrophosphatase activity;1.5324290040938e-16!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;1.57817146620976e-16!GO:0017111;nucleoside-triphosphatase activity;1.70219088018408e-16!GO:0016817;hydrolase activity, acting on acid anhydrides;2.19734777967983e-16!GO:0043285;biopolymer catabolic process;6.99968818823475e-16!GO:0000166;nucleotide binding;8.17910395708428e-16!GO:0005746;mitochondrial respiratory chain;1.2064312566156e-15!GO:0022618;protein-RNA complex assembly;2.34285670412085e-15!GO:0048193;Golgi vesicle transport;3.23134499960017e-15!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;3.5721621917819e-15!GO:0000502;proteasome complex (sensu Eukaryota);4.14926303331385e-15!GO:0030163;protein catabolic process;5.5235814782691e-15!GO:0009057;macromolecule catabolic process;8.80692148604912e-15!GO:0008134;transcription factor binding;1.09203263103336e-14!GO:0044451;nucleoplasm part;1.62705956906829e-14!GO:0042175;nuclear envelope-endoplasmic reticulum network;2.64745368115478e-14!GO:0050136;NADH dehydrogenase (quinone) activity;4.06607166657418e-14!GO:0003954;NADH dehydrogenase activity;4.06607166657418e-14!GO:0008137;NADH dehydrogenase (ubiquinone) activity;4.06607166657418e-14!GO:0051186;cofactor metabolic process;4.49316303702674e-14!GO:0051082;unfolded protein binding;5.3016119203201e-14!GO:0044265;cellular macromolecule catabolic process;5.31858716101587e-14!GO:0051603;proteolysis involved in cellular protein catabolic process;6.07135167209282e-14!GO:0005789;endoplasmic reticulum membrane;1.01089984806881e-13!GO:0016874;ligase activity;1.08766349689553e-13!GO:0044257;cellular protein catabolic process;1.09658848993113e-13!GO:0019941;modification-dependent protein catabolic process;1.13710027840951e-13!GO:0043632;modification-dependent macromolecule catabolic process;1.13710027840951e-13!GO:0031980;mitochondrial lumen;1.14451779614951e-13!GO:0005759;mitochondrial matrix;1.14451779614951e-13!GO:0006605;protein targeting;1.27848542655068e-13!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);1.48805760258043e-13!GO:0008135;translation factor activity, nucleic acid binding;1.57950407097982e-13!GO:0006511;ubiquitin-dependent protein catabolic process;1.78067933443042e-13!GO:0016192;vesicle-mediated transport;3.16035977051199e-13!GO:0012501;programmed cell death;3.30574656662277e-13!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);3.80436621276059e-13!GO:0006512;ubiquitin cycle;5.40365448009172e-13!GO:0005730;nucleolus;6.39376970019e-13!GO:0006915;apoptosis;8.77233762704346e-13!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;1.29749291541445e-12!GO:0005793;ER-Golgi intermediate compartment;2.1921925677578e-12!GO:0030964;NADH dehydrogenase complex (quinone);3.03205178128926e-12!GO:0045271;respiratory chain complex I;3.03205178128926e-12!GO:0005747;mitochondrial respiratory chain complex I;3.03205178128926e-12!GO:0042775;organelle ATP synthesis coupled electron transport;6.71746719865794e-12!GO:0042773;ATP synthesis coupled electron transport;6.71746719865794e-12!GO:0043412;biopolymer modification;6.73516317969901e-12!GO:0032553;ribonucleotide binding;6.84291381939282e-12!GO:0032555;purine ribonucleotide binding;6.84291381939282e-12!GO:0008219;cell death;7.61380958647319e-12!GO:0016265;death;7.61380958647319e-12!GO:0048523;negative regulation of cellular process;9.18061132778816e-12!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;9.18061132778816e-12!GO:0017076;purine nucleotide binding;1.52580384130331e-11!GO:0006732;coenzyme metabolic process;1.96402341616334e-11!GO:0044248;cellular catabolic process;2.08465210348785e-11!GO:0003743;translation initiation factor activity;4.66590630914231e-11!GO:0009055;electron carrier activity;4.73187828900891e-11!GO:0005761;mitochondrial ribosome;5.31237722772665e-11!GO:0000313;organellar ribosome;5.31237722772665e-11!GO:0006259;DNA metabolic process;6.45392448931137e-11!GO:0006464;protein modification process;8.38133281221037e-11!GO:0006413;translational initiation;1.36383166019856e-10!GO:0048519;negative regulation of biological process;2.10973862279898e-10!GO:0003712;transcription cofactor activity;2.63229289424852e-10!GO:0009259;ribonucleotide metabolic process;3.94324080886502e-10!GO:0006446;regulation of translational initiation;9.4401833503177e-10!GO:0006163;purine nucleotide metabolic process;1.02988101132358e-09!GO:0009150;purine ribonucleotide metabolic process;1.20607044997002e-09!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;1.2683506164879e-09!GO:0000398;nuclear mRNA splicing, via spliceosome;2.07059125197974e-09!GO:0000375;RNA splicing, via transesterification reactions;2.07059125197974e-09!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;2.07059125197974e-09!GO:0005635;nuclear envelope;2.31662454414249e-09!GO:0007049;cell cycle;2.57059352566599e-09!GO:0006164;purine nucleotide biosynthetic process;2.85372749619673e-09!GO:0009152;purine ribonucleotide biosynthetic process;3.12066631258149e-09!GO:0009260;ribonucleotide biosynthetic process;3.33913355539363e-09!GO:0008565;protein transporter activity;4.21818051771897e-09!GO:0044431;Golgi apparatus part;4.30798988362215e-09!GO:0005768;endosome;5.29221841845628e-09!GO:0005788;endoplasmic reticulum lumen;5.42062392415151e-09!GO:0009199;ribonucleoside triphosphate metabolic process;5.54199155665755e-09!GO:0003924;GTPase activity;5.95334864691329e-09!GO:0031988;membrane-bound vesicle;6.2184751485814e-09!GO:0016023;cytoplasmic membrane-bound vesicle;6.2200588682384e-09!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;6.56099091855915e-09!GO:0031965;nuclear membrane;7.19310314411984e-09!GO:0009141;nucleoside triphosphate metabolic process;9.25589768128622e-09!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;9.28978847787943e-09!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;1.10988963168317e-08!GO:0043067;regulation of programmed cell death;1.19831026389936e-08!GO:0005524;ATP binding;1.25982240496263e-08!GO:0009205;purine ribonucleoside triphosphate metabolic process;1.30733758981521e-08!GO:0009144;purine nucleoside triphosphate metabolic process;1.30733758981521e-08!GO:0006913;nucleocytoplasmic transport;1.30733758981521e-08!GO:0042254;ribosome biogenesis and assembly;1.5139587658401e-08!GO:0042981;regulation of apoptosis;1.54887736472907e-08!GO:0006888;ER to Golgi vesicle-mediated transport;1.54887736472907e-08!GO:0015986;ATP synthesis coupled proton transport;1.60455468281272e-08!GO:0015985;energy coupled proton transport, down electrochemical gradient;1.60455468281272e-08!GO:0009142;nucleoside triphosphate biosynthetic process;1.98643969620465e-08!GO:0009201;ribonucleoside triphosphate biosynthetic process;1.98643969620465e-08!GO:0032559;adenyl ribonucleotide binding;2.21859004775459e-08!GO:0043069;negative regulation of programmed cell death;2.29514210226433e-08!GO:0051169;nuclear transport;2.29514210226433e-08!GO:0008639;small protein conjugating enzyme activity;2.33560135735051e-08!GO:0043687;post-translational protein modification;2.33560135735051e-08!GO:0003676;nucleic acid binding;2.65204175405486e-08!GO:0030120;vesicle coat;3.11110686092087e-08!GO:0030662;coated vesicle membrane;3.11110686092087e-08!GO:0051246;regulation of protein metabolic process;3.48433771829926e-08!GO:0007249;I-kappaB kinase/NF-kappaB cascade;3.73378092880106e-08!GO:0004842;ubiquitin-protein ligase activity;3.99919494559036e-08!GO:0019829;cation-transporting ATPase activity;4.17510718721525e-08!GO:0016604;nuclear body;4.28744878830451e-08!GO:0019787;small conjugating protein ligase activity;4.66404021285847e-08!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;4.80536714579728e-08!GO:0009145;purine nucleoside triphosphate biosynthetic process;4.80536714579728e-08!GO:0006916;anti-apoptosis;4.82424739897615e-08!GO:0030554;adenyl nucleotide binding;5.44482195093756e-08!GO:0043066;negative regulation of apoptosis;6.30007721813193e-08!GO:0046034;ATP metabolic process;8.48908918685459e-08!GO:0005773;vacuole;8.51803550800895e-08!GO:0003714;transcription corepressor activity;8.51803550800895e-08!GO:0016070;RNA metabolic process;8.69628826536375e-08!GO:0031982;vesicle;9.34990560247007e-08!GO:0031410;cytoplasmic vesicle;1.05489935534299e-07!GO:0031252;leading edge;1.10010609372416e-07!GO:0009056;catabolic process;1.29097719789332e-07!GO:0016879;ligase activity, forming carbon-nitrogen bonds;1.3879133732996e-07!GO:0051726;regulation of cell cycle;1.43971835593805e-07!GO:0000074;regulation of progression through cell cycle;1.50663508894606e-07!GO:0015078;hydrogen ion transmembrane transporter activity;1.53036479134532e-07!GO:0044453;nuclear membrane part;1.60419499210426e-07!GO:0009060;aerobic respiration;1.99638302449118e-07!GO:0050794;regulation of cellular process;2.24378695462954e-07!GO:0006754;ATP biosynthetic process;2.66819784889726e-07!GO:0006753;nucleoside phosphate metabolic process;2.66819784889726e-07!GO:0048475;coated membrane;2.77625541249925e-07!GO:0030117;membrane coat;2.77625541249925e-07!GO:0051188;cofactor biosynthetic process;2.77625541249925e-07!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;2.77625541249925e-07!GO:0017038;protein import;3.00230692042133e-07!GO:0016607;nuclear speck;3.15360492411611e-07!GO:0000139;Golgi membrane;3.16634329810763e-07!GO:0042623;ATPase activity, coupled;3.57684328173505e-07!GO:0006399;tRNA metabolic process;3.97052191255693e-07!GO:0016469;proton-transporting two-sector ATPase complex;3.99726871836231e-07!GO:0016881;acid-amino acid ligase activity;4.12831040618458e-07!GO:0016887;ATPase activity;4.18335170683399e-07!GO:0006461;protein complex assembly;4.77577137886528e-07!GO:0005839;proteasome core complex (sensu Eukaryota);7.99364299387724e-07!GO:0022402;cell cycle process;8.96212453169221e-07!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;9.30489156832058e-07!GO:0004812;aminoacyl-tRNA ligase activity;9.30489156832058e-07!GO:0016875;ligase activity, forming carbon-oxygen bonds;9.30489156832058e-07!GO:0045333;cellular respiration;9.6280732019779e-07!GO:0007005;mitochondrion organization and biogenesis;1.02178678033021e-06!GO:0000323;lytic vacuole;1.14444980640824e-06!GO:0005764;lysosome;1.14444980640824e-06!GO:0043038;amino acid activation;1.16538092444907e-06!GO:0006418;tRNA aminoacylation for protein translation;1.16538092444907e-06!GO:0043039;tRNA aminoacylation;1.16538092444907e-06!GO:0005770;late endosome;1.3853250127346e-06!GO:0008361;regulation of cell size;2.05840616372623e-06!GO:0016564;transcription repressor activity;2.27252004450221e-06!GO:0016491;oxidoreductase activity;2.54055036876186e-06!GO:0006366;transcription from RNA polymerase II promoter;2.6836561008778e-06!GO:0009117;nucleotide metabolic process;3.19797891070583e-06!GO:0004386;helicase activity;3.42250250032041e-06!GO:0007243;protein kinase cascade;3.46485484272238e-06!GO:0016049;cell growth;3.51425733092209e-06!GO:0006752;group transfer coenzyme metabolic process;3.63074549913554e-06!GO:0008026;ATP-dependent helicase activity;3.96212764969219e-06!GO:0006099;tricarboxylic acid cycle;4.14618330437097e-06!GO:0046356;acetyl-CoA catabolic process;4.14618330437097e-06!GO:0051187;cofactor catabolic process;4.59885398059393e-06!GO:0005525;GTP binding;4.64885250113614e-06!GO:0009108;coenzyme biosynthetic process;5.14149916995348e-06!GO:0004298;threonine endopeptidase activity;5.57098165370178e-06!GO:0051789;response to protein stimulus;5.61097576592884e-06!GO:0006986;response to unfolded protein;5.61097576592884e-06!GO:0045786;negative regulation of progression through cell cycle;6.60766793899153e-06!GO:0044440;endosomal part;8.01245177384912e-06!GO:0010008;endosome membrane;8.01245177384912e-06!GO:0009109;coenzyme catabolic process;9.56291423046989e-06!GO:0005798;Golgi-associated vesicle;9.62647261865728e-06!GO:0030532;small nuclear ribonucleoprotein complex;9.9793164836082e-06!GO:0048522;positive regulation of cellular process;1.06360467898266e-05!GO:0016787;hydrolase activity;1.06360467898266e-05!GO:0065002;intracellular protein transport across a membrane;1.08511491500764e-05!GO:0001558;regulation of cell growth;1.10559261298167e-05!GO:0045259;proton-transporting ATP synthase complex;1.23939155887115e-05!GO:0032446;protein modification by small protein conjugation;1.46550596629652e-05!GO:0005643;nuclear pore;1.64251678714253e-05!GO:0006084;acetyl-CoA metabolic process;1.81511951986744e-05!GO:0015077;monovalent inorganic cation transmembrane transporter activity;1.91479009545844e-05!GO:0006325;establishment and/or maintenance of chromatin architecture;2.01574204572891e-05!GO:0006613;cotranslational protein targeting to membrane;2.13396974111952e-05!GO:0030036;actin cytoskeleton organization and biogenesis;2.15842985929456e-05!GO:0006974;response to DNA damage stimulus;2.17496754843143e-05!GO:0008092;cytoskeletal protein binding;2.24176445511647e-05!GO:0050789;regulation of biological process;2.31268763935556e-05!GO:0016567;protein ubiquitination;2.49374628491562e-05!GO:0019899;enzyme binding;2.77228081725018e-05!GO:0045454;cell redox homeostasis;2.85902794511617e-05!GO:0006793;phosphorus metabolic process;2.94217123600951e-05!GO:0006796;phosphate metabolic process;2.94217123600951e-05!GO:0031324;negative regulation of cellular metabolic process;3.09606386111342e-05!GO:0030867;rough endoplasmic reticulum membrane;3.49888717744129e-05!GO:0032561;guanyl ribonucleotide binding;3.55086337794631e-05!GO:0019001;guanyl nucleotide binding;3.55086337794631e-05!GO:0005667;transcription factor complex;3.65457518495098e-05!GO:0051170;nuclear import;3.75009750853112e-05!GO:0030133;transport vesicle;3.7611367135359e-05!GO:0008654;phospholipid biosynthetic process;3.7695442962598e-05!GO:0016853;isomerase activity;4.04580382309447e-05!GO:0006364;rRNA processing;4.38547695703942e-05!GO:0006323;DNA packaging;4.59533739980609e-05!GO:0016310;phosphorylation;4.66567617448676e-05!GO:0006606;protein import into nucleus;5.34296272516197e-05!GO:0016072;rRNA metabolic process;8.15110546181463e-05!GO:0005905;coated pit;8.8014312570852e-05!GO:0033116;ER-Golgi intermediate compartment membrane;8.80626899975505e-05!GO:0015630;microtubule cytoskeleton;9.2442190609794e-05!GO:0046930;pore complex;0.000105093771537757!GO:0005769;early endosome;0.000105655882687632!GO:0031968;organelle outer membrane;0.000107908236805509!GO:0019867;outer membrane;0.000117192192343002!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;0.000126504000159195!GO:0043566;structure-specific DNA binding;0.000130294261198812!GO:0000245;spliceosome assembly;0.000132450992186722!GO:0005048;signal sequence binding;0.000137504274900098!GO:0006403;RNA localization;0.000146829713500394!GO:0005762;mitochondrial large ribosomal subunit;0.000159113663942729!GO:0000315;organellar large ribosomal subunit;0.000159113663942729!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;0.000160910598872696!GO:0016563;transcription activator activity;0.000161551844698177!GO:0030029;actin filament-based process;0.000164002195967463!GO:0016859;cis-trans isomerase activity;0.000176842849040225!GO:0006091;generation of precursor metabolites and energy;0.000177326457715838!GO:0044262;cellular carbohydrate metabolic process;0.000177811647042333!GO:0007010;cytoskeleton organization and biogenesis;0.000180770084772435!GO:0015980;energy derivation by oxidation of organic compounds;0.000203984802489797!GO:0050657;nucleic acid transport;0.000206652850796669!GO:0051236;establishment of RNA localization;0.000206652850796669!GO:0050658;RNA transport;0.000206652850796669!GO:0009892;negative regulation of metabolic process;0.00020757949852524!GO:0016740;transferase activity;0.000211475150885332!GO:0006612;protein targeting to membrane;0.000211475150885332!GO:0005852;eukaryotic translation initiation factor 3 complex;0.000216609234139925!GO:0003724;RNA helicase activity;0.000243910828567148!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;0.000245436432012115!GO:0006281;DNA repair;0.000266231735013651!GO:0009967;positive regulation of signal transduction;0.000268639900338646!GO:0005791;rough endoplasmic reticulum;0.000269531834513871!GO:0008250;oligosaccharyl transferase complex;0.000281408875557325!GO:0000278;mitotic cell cycle;0.000288750567935686!GO:0051276;chromosome organization and biogenesis;0.000292721925675691!GO:0031202;RNA splicing factor activity, transesterification mechanism;0.00030514955926469!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.000326509846967261!GO:0005885;Arp2/3 protein complex;0.000338161031442208!GO:0001726;ruffle;0.000363485846074043!GO:0030659;cytoplasmic vesicle membrane;0.000363485846074043!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.000366353492797529!GO:0015399;primary active transmembrane transporter activity;0.000366353492797529!GO:0000151;ubiquitin ligase complex;0.000369587831905409!GO:0004576;oligosaccharyl transferase activity;0.000375588226644036!GO:0008047;enzyme activator activity;0.000382812491027513!GO:0048468;cell development;0.000384892118700719!GO:0065004;protein-DNA complex assembly;0.000426691715206875!GO:0003713;transcription coactivator activity;0.000435769039855211!GO:0003697;single-stranded DNA binding;0.000473510206974229!GO:0043021;ribonucleoprotein binding;0.000474852326257313!GO:0016568;chromatin modification;0.000522227395844882!GO:0006891;intra-Golgi vesicle-mediated transport;0.000522227395844882!GO:0009719;response to endogenous stimulus;0.000565629530074943!GO:0005741;mitochondrial outer membrane;0.000573978115251226!GO:0030663;COPI coated vesicle membrane;0.000619128923012895!GO:0030126;COPI vesicle coat;0.000619128923012895!GO:0043623;cellular protein complex assembly;0.000681086390547633!GO:0018196;peptidyl-asparagine modification;0.000709090606939378!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.000709090606939378!GO:0005813;centrosome;0.000714833683241222!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.000714833683241222!GO:0048518;positive regulation of biological process;0.000832728090934558!GO:0016044;membrane organization and biogenesis;0.000934345413378191!GO:0016126;sterol biosynthetic process;0.000934345413378191!GO:0007264;small GTPase mediated signal transduction;0.000954042643959792!GO:0044433;cytoplasmic vesicle part;0.00101764263503813!GO:0051920;peroxiredoxin activity;0.00102008651423828!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.00115678821136678!GO:0006333;chromatin assembly or disassembly;0.00123815266265703!GO:0009165;nucleotide biosynthetic process;0.0013821320116071!GO:0016706;oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors;0.00146572161268099!GO:0006414;translational elongation;0.0014763170276085!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.00149290187832079!GO:0040008;regulation of growth;0.00150590777252661!GO:0065009;regulation of a molecular function;0.00153416804865297!GO:0016481;negative regulation of transcription;0.00162056633669599!GO:0030137;COPI-coated vesicle;0.00162056633669599!GO:0005815;microtubule organizing center;0.00162246681403798!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.00162246681403798!GO:0030176;integral to endoplasmic reticulum membrane;0.00163821114613574!GO:0016772;transferase activity, transferring phosphorus-containing groups;0.00170014999763289!GO:0019843;rRNA binding;0.00177317816533238!GO:0000314;organellar small ribosomal subunit;0.00182350325204462!GO:0005763;mitochondrial small ribosomal subunit;0.00182350325204462!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;0.00194108850259069!GO:0048471;perinuclear region of cytoplasm;0.00194863945281173!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00194863945281173!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00194863945281173!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00194863945281173!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.00199069730971346!GO:0031543;peptidyl-proline dioxygenase activity;0.00199378429947205!GO:0046474;glycerophospholipid biosynthetic process;0.00205213760326725!GO:0008610;lipid biosynthetic process;0.00205449937447834!GO:0012506;vesicle membrane;0.002080808277642!GO:0008186;RNA-dependent ATPase activity;0.00210849233731927!GO:0030027;lamellipodium;0.00211110448985092!GO:0042802;identical protein binding;0.00211161391564793!GO:0031072;heat shock protein binding;0.00211161391564793!GO:0065007;biological regulation;0.00218824623298725!GO:0043284;biopolymer biosynthetic process;0.00222999363174985!GO:0008243;plasminogen activator activity;0.0022347709604534!GO:0030658;transport vesicle membrane;0.00239077997799721!GO:0016779;nucleotidyltransferase activity;0.0024288078777462!GO:0016281;eukaryotic translation initiation factor 4F complex;0.00251107111801455!GO:0030127;COPII vesicle coat;0.00253938481833308!GO:0012507;ER to Golgi transport vesicle membrane;0.00253938481833308!GO:0046467;membrane lipid biosynthetic process;0.00253938481833308!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.00258121326590312!GO:0030132;clathrin coat of coated pit;0.0028631708917883!GO:0007006;mitochondrial membrane organization and biogenesis;0.00293559021799848!GO:0031418;L-ascorbic acid binding;0.00299086709975418!GO:0019798;procollagen-proline dioxygenase activity;0.00306192921162204!GO:0007040;lysosome organization and biogenesis;0.00319279177504614!GO:0051028;mRNA transport;0.00319279177504614!GO:0030134;ER to Golgi transport vesicle;0.00326580833064904!GO:0006839;mitochondrial transport;0.0033183848129512!GO:0000785;chromatin;0.00337692485113555!GO:0007050;cell cycle arrest;0.00337692485113555!GO:0022890;inorganic cation transmembrane transporter activity;0.00342112100197228!GO:0016197;endosome transport;0.00345186224167724!GO:0045792;negative regulation of cell size;0.00350702141696471!GO:0003779;actin binding;0.00357614934230807!GO:0051045;negative regulation of membrane protein ectodomain proteolysis;0.00374593787354799!GO:0051043;regulation of membrane protein ectodomain proteolysis;0.00374593787354799!GO:0006357;regulation of transcription from RNA polymerase II promoter;0.00380981073696508!GO:0048500;signal recognition particle;0.00390827398812461!GO:0006260;DNA replication;0.00392223891272397!GO:0046489;phosphoinositide biosynthetic process;0.00393110831040391!GO:0006509;membrane protein ectodomain proteolysis;0.00429982770578923!GO:0033619;membrane protein proteolysis;0.00429982770578923!GO:0051168;nuclear export;0.00439092637104801!GO:0043681;protein import into mitochondrion;0.00444593016945495!GO:0030308;negative regulation of cell growth;0.00449657296853768!GO:0043492;ATPase activity, coupled to movement of substances;0.00473313080507068!GO:0015992;proton transport;0.00474920644820533!GO:0051427;hormone receptor binding;0.00474920644820533!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.00474920644820533!GO:0004177;aminopeptidase activity;0.004751505529051!GO:0005774;vacuolar membrane;0.00492351530334897!GO:0005581;collagen;0.00493286241193525!GO:0048487;beta-tubulin binding;0.00503460363970749!GO:0030118;clathrin coat;0.00512957028444392!GO:0006650;glycerophospholipid metabolic process;0.00516756502796591!GO:0008632;apoptotic program;0.00519930896599885!GO:0006626;protein targeting to mitochondrion;0.00523344681829806!GO:0006818;hydrogen transport;0.00524755674790268!GO:0004004;ATP-dependent RNA helicase activity;0.00527746114444424!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.00527753726942026!GO:0031902;late endosome membrane;0.00545640569037645!GO:0006979;response to oxidative stress;0.00550704628037129!GO:0001666;response to hypoxia;0.00587099738890175!GO:0003690;double-stranded DNA binding;0.00587591612464736!GO:0017166;vinculin binding;0.00612656610822966!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.00647235277402219!GO:0008139;nuclear localization sequence binding;0.00658281631877524!GO:0030660;Golgi-associated vesicle membrane;0.00679366644423419!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.00690886702525894!GO:0000307;cyclin-dependent protein kinase holoenzyme complex;0.00690901160867191!GO:0007033;vacuole organization and biogenesis;0.00717865021705037!GO:0006417;regulation of translation;0.00721416386399133!GO:0003899;DNA-directed RNA polymerase activity;0.00721416386399133!GO:0006695;cholesterol biosynthetic process;0.00741914273069798!GO:0046519;sphingoid metabolic process;0.00761575813800342!GO:0006334;nucleosome assembly;0.00804556257541296!GO:0035257;nuclear hormone receptor binding;0.008108252808557!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.00812879945071176!GO:0045047;protein targeting to ER;0.00812879945071176!GO:0051087;chaperone binding;0.00832066572112151!GO:0051270;regulation of cell motility;0.00889547142027394!GO:0003729;mRNA binding;0.00954538589206232!GO:0005096;GTPase activator activity;0.00988006244614162!GO:0005869;dynactin complex;0.0103877008085795!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.0110386015632942!GO:0000059;protein import into nucleus, docking;0.0111802229344902!GO:0045045;secretory pathway;0.0122145144267743!GO:0006672;ceramide metabolic process;0.0124109692493511!GO:0044437;vacuolar part;0.0126939408741699!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.0131991817551039!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.0131991817551039!GO:0008312;7S RNA binding;0.01323427746731!GO:0006383;transcription from RNA polymerase III promoter;0.0135220478556673!GO:0008234;cysteine-type peptidase activity;0.0142579024229948!GO:0006892;post-Golgi vesicle-mediated transport;0.0145326811849913!GO:0015631;tubulin binding;0.0155588879332405!GO:0030041;actin filament polymerization;0.015727397366572!GO:0005862;muscle thin filament tropomyosin;0.015727397366572!GO:0030384;phosphoinositide metabolic process;0.0159029015467232!GO:0005765;lysosomal membrane;0.0159779447780106!GO:0007030;Golgi organization and biogenesis;0.0160043807492655!GO:0007242;intracellular signaling cascade;0.0162735444273162!GO:0016667;oxidoreductase activity, acting on sulfur group of donors;0.0162735444273162!GO:0016363;nuclear matrix;0.0162735444273162!GO:0006740;NADPH regeneration;0.0164083541893559!GO:0006098;pentose-phosphate shunt;0.0164083541893559!GO:0043433;negative regulation of transcription factor activity;0.0164458215082765!GO:0050811;GABA receptor binding;0.0166059654047436!GO:0003746;translation elongation factor activity;0.0167202034341974!GO:0006497;protein amino acid lipidation;0.0168784958006611!GO:0009966;regulation of signal transduction;0.0169033039185841!GO:0006007;glucose catabolic process;0.0169645331946111!GO:0005694;chromosome;0.0169645331946111!GO:0051287;NAD binding;0.0172634540208776!GO:0043022;ribosome binding;0.0176918881698774!GO:0031497;chromatin assembly;0.0177073655502892!GO:0006595;polyamine metabolic process;0.0179208500642214!GO:0048144;fibroblast proliferation;0.018723044777961!GO:0048145;regulation of fibroblast proliferation;0.018723044777961!GO:0051128;regulation of cellular component organization and biogenesis;0.0187936921186669!GO:0030503;regulation of cell redox homeostasis;0.0191348318400681!GO:0008180;signalosome;0.0192010005621092!GO:0004197;cysteine-type endopeptidase activity;0.0199318881675751!GO:0045926;negative regulation of growth;0.0199318881675751!GO:0008320;protein transmembrane transporter activity;0.0199318881675751!GO:0044420;extracellular matrix part;0.0202219367082231!GO:0031529;ruffle organization and biogenesis;0.0202219367082231!GO:0007034;vacuolar transport;0.0204336591641186!GO:0030433;ER-associated protein catabolic process;0.0204336591641186!GO:0006515;misfolded or incompletely synthesized protein catabolic process;0.0204336591641186!GO:0035258;steroid hormone receptor binding;0.0207201528881672!GO:0006402;mRNA catabolic process;0.0207487629392929!GO:0000087;M phase of mitotic cell cycle;0.0212440852958509!GO:0005100;Rho GTPase activator activity;0.0214230238832722!GO:0045892;negative regulation of transcription, DNA-dependent;0.0214354618071166!GO:0030125;clathrin vesicle coat;0.0220503410101759!GO:0030665;clathrin coated vesicle membrane;0.0220503410101759!GO:0006607;NLS-bearing substrate import into nucleus;0.0223227826286035!GO:0045936;negative regulation of phosphate metabolic process;0.0223227826286035!GO:0000049;tRNA binding;0.0223296324206317!GO:0044427;chromosomal part;0.0224616989706917!GO:0051272;positive regulation of cell motility;0.0224702730888889!GO:0040017;positive regulation of locomotion;0.0224702730888889!GO:0007569;cell aging;0.0224757055305018!GO:0003756;protein disulfide isomerase activity;0.022793245686911!GO:0016864;intramolecular oxidoreductase activity, transposing S-S bonds;0.022793245686911!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.0228933089494832!GO:0015002;heme-copper terminal oxidase activity;0.0228933089494832!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.0228933089494832!GO:0004129;cytochrome-c oxidase activity;0.0228933089494832!GO:0006984;ER-nuclear signaling pathway;0.0229121731471322!GO:0000339;RNA cap binding;0.0231729827983276!GO:0007067;mitosis;0.0238442284763615!GO:0040011;locomotion;0.0242217682178168!GO:0051101;regulation of DNA binding;0.0246022671956659!GO:0051252;regulation of RNA metabolic process;0.0249068456633936!GO:0030032;lamellipodium biogenesis;0.0251620951893009!GO:0043065;positive regulation of apoptosis;0.025195283666305!GO:0033559;unsaturated fatty acid metabolic process;0.0261992758800203!GO:0006636;unsaturated fatty acid biosynthetic process;0.0261992758800203!GO:0006950;response to stress;0.0262480474051823!GO:0035035;histone acetyltransferase binding;0.0266680115669596!GO:0006518;peptide metabolic process;0.0268401976405786!GO:0000096;sulfur amino acid metabolic process;0.0268640298214901!GO:0050790;regulation of catalytic activity;0.0269373696211423!GO:0040012;regulation of locomotion;0.0274927635719825!GO:0031301;integral to organelle membrane;0.0276667636641088!GO:0005832;chaperonin-containing T-complex;0.0277543014267585!GO:0031901;early endosome membrane;0.0280505406243282!GO:0000902;cell morphogenesis;0.0282192133850125!GO:0032989;cellular structure morphogenesis;0.0282192133850125!GO:0031326;regulation of cellular biosynthetic process;0.0282192133850125!GO:0008154;actin polymerization and/or depolymerization;0.0284333483042574!GO:0009889;regulation of biosynthetic process;0.0284935644672019!GO:0005684;U2-dependent spliceosome;0.0288979129464198!GO:0045941;positive regulation of transcription;0.0290579922740359!GO:0000209;protein polyubiquitination;0.0292267382855186!GO:0046426;negative regulation of JAK-STAT cascade;0.0292352320851665!GO:0032940;secretion by cell;0.0295025415742612!GO:0003711;transcription elongation regulator activity;0.0297183296712404!GO:0043161;proteasomal ubiquitin-dependent protein catabolic process;0.0297192493308164!GO:0043068;positive regulation of programmed cell death;0.0297225574798545!GO:0016272;prefoldin complex;0.0297225574798545!GO:0031625;ubiquitin protein ligase binding;0.0297225574798545!GO:0045935;positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.0297819706562845!GO:0048146;positive regulation of fibroblast proliferation;0.0299485534845884!GO:0032507;maintenance of cellular protein localization;0.0307391734078102!GO:0007160;cell-matrix adhesion;0.0313251194937285!GO:0005520;insulin-like growth factor binding;0.0322458845050977!GO:0005874;microtubule;0.0326413734059422!GO:0051336;regulation of hydrolase activity;0.0327854022833775!GO:0016780;phosphotransferase activity, for other substituted phosphate groups;0.0327931518534005!GO:0045893;positive regulation of transcription, DNA-dependent;0.0327931518534005!GO:0001952;regulation of cell-matrix adhesion;0.0330720208557018!GO:0022408;negative regulation of cell-cell adhesion;0.0330720208557018!GO:0031589;cell-substrate adhesion;0.0340829592217466!GO:0032981;mitochondrial respiratory chain complex I assembly;0.0343800940162706!GO:0010257;NADH dehydrogenase complex assembly;0.0343800940162706!GO:0033108;mitochondrial respiratory chain complex assembly;0.0343800940162706!GO:0042158;lipoprotein biosynthetic process;0.0345865311961447!GO:0004656;procollagen-proline 4-dioxygenase activity;0.0347497294703156!GO:0031545;peptidyl-proline 4-dioxygenase activity;0.0347497294703156!GO:0016627;oxidoreductase activity, acting on the CH-CH group of donors;0.0347932004603023!GO:0030119;AP-type membrane coat adaptor complex;0.0351208542504167!GO:0007021;tubulin folding;0.0351767830060986!GO:0019205;nucleobase, nucleoside, nucleotide kinase activity;0.0352754745120947!GO:0051301;cell division;0.0352778528101317!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.0356072033310832!GO:0043488;regulation of mRNA stability;0.0360211075731334!GO:0043487;regulation of RNA stability;0.0360211075731334!GO:0030833;regulation of actin filament polymerization;0.0361208560927292!GO:0051540;metal cluster binding;0.0361307328070752!GO:0051536;iron-sulfur cluster binding;0.0361307328070752!GO:0030984;kininogen binding;0.0361738583043336!GO:0004213;cathepsin B activity;0.0361738583043336!GO:0016860;intramolecular oxidoreductase activity;0.0376375492627343!GO:0006643;membrane lipid metabolic process;0.0376556011981742!GO:0006354;RNA elongation;0.0378570003901186!GO:0008637;apoptotic mitochondrial changes;0.0381005813404002!GO:0007265;Ras protein signal transduction;0.0381091871720772!GO:0019318;hexose metabolic process;0.0387546553628905!GO:0022884;macromolecule transmembrane transporter activity;0.0387546553628905!GO:0015450;P-P-bond-hydrolysis-driven protein transmembrane transporter activity;0.0387546553628905!GO:0005099;Ras GTPase activator activity;0.0387546553628905!GO:0046483;heterocycle metabolic process;0.0388629227153138!GO:0022403;cell cycle phase;0.0389610633621575!GO:0008475;procollagen-lysine 5-dioxygenase activity;0.0390257511658973!GO:0051329;interphase of mitotic cell cycle;0.0395492473572196!GO:0008033;tRNA processing;0.0398839182122771!GO:0030521;androgen receptor signaling pathway;0.0401771134039946!GO:0030880;RNA polymerase complex;0.0402370385042093!GO:0005637;nuclear inner membrane;0.0404877953434807!GO:0002474;antigen processing and presentation of peptide antigen via MHC class I;0.040784038039179!GO:0033673;negative regulation of kinase activity;0.0414977410109987!GO:0006469;negative regulation of protein kinase activity;0.0414977410109987!GO:0051235;maintenance of localization;0.0423706077450498!GO:0006611;protein export from nucleus;0.0426275807954361!GO:0022406;membrane docking;0.0430121553967981!GO:0048278;vesicle docking;0.0430121553967981!GO:0045185;maintenance of protein localization;0.0431224179713676!GO:0008538;proteasome activator activity;0.0431432890171606!GO:0006368;RNA elongation from RNA polymerase II promoter;0.0432018190692296!GO:0006506;GPI anchor biosynthetic process;0.0436092473524589!GO:0031124;mRNA 3'-end processing;0.0436092473524589!GO:0006458;'de novo' protein folding;0.0436092473524589!GO:0051084;'de novo' posttranslational protein folding;0.0436092473524589!GO:0005586;collagen type III;0.0436208877113158!GO:0006778;porphyrin metabolic process;0.0438794246518596!GO:0033013;tetrapyrrole metabolic process;0.0438794246518596!GO:0004674;protein serine/threonine kinase activity;0.0440829563163424!GO:0019752;carboxylic acid metabolic process;0.044390089320354!GO:0000079;regulation of cyclin-dependent protein kinase activity;0.045922715199476!GO:0044452;nucleolar part;0.045922715199476!GO:0043281;regulation of caspase activity;0.0466711912022705!GO:0050681;androgen receptor binding;0.0468619423488725!GO:0006790;sulfur metabolic process;0.0468669068906023!GO:0008147;structural constituent of bone;0.0474712821711894!GO:0042326;negative regulation of phosphorylation;0.0476199046287803!GO:0005996;monosaccharide metabolic process;0.04845084045965!GO:0051098;regulation of binding;0.0487324859069773!GO:0006082;organic acid metabolic process;0.0488810151316544!GO:0051348;negative regulation of transferase activity;0.0491061673400486!GO:0006897;endocytosis;0.0495311865838259!GO:0010324;membrane invagination;0.0495311865838259!GO:0018193;peptidyl-amino acid modification;0.0497402760113176
|sample_id=11835
|sample_note=
|sample_sex=
|sample_species=Human (Homo sapiens)
|sample_strain=
|sample_tissue=ovary
|top_motifs=PAX4:2.00908478193;SRF:1.65722958107;HIF1A:1.58016283354;ALX4:1.52521756689;UFEwm:1.4665211793;ZNF384:1.42800486425;GZF1:1.40317069146;TAL1_TCF{3,4,12}:1.38596707902;NR3C1:1.31342217067;ESR1:1.29066279842;TEF:1.25764251913;ZNF238:1.25347163696;RXRA_VDR{dimer}:1.18027069119;NKX3-1:1.11169282036;ATF6:1.11032971605;NFE2L1:1.08829963378;HOX{A4,D4}:1.05413997129;GLI1..3:1.05322501337;HSF1,2:1.01336799274;TEAD1:0.988271381377;MYBL2:0.972253603573;XBP1:0.961268611846;TLX1..3_NFIC{dimer}:0.936936434776;SPZ1:0.935812078714;EVI1:0.930100282034;RXR{A,B,G}:0.917214262049;TBP:0.894415288785;ZIC1..3:0.881775059096;HES1:0.848661339077;ZBTB16:0.842754976441;EN1,2:0.778773255837;EBF1:0.775718017838;XCPE1{core}:0.766872960883;HOX{A5,B5}:0.739263713421;GTF2A1,2:0.733510807627;TOPORS:0.729753898076;ZBTB6:0.729125076333;NR6A1:0.713901312936;AIRE:0.681077066364;FOXL1:0.68100992438;PRDM1:0.680583870195;TP53:0.656446231648;HMX1:0.650466012878;TFCP2:0.635739359949;PPARG:0.609494976459;HMGA1,2:0.604610033878;MAFB:0.598559978177;MTE{core}:0.596879620582;NFATC1..3:0.589784265829;GATA4:0.581348619477;PAX1,9:0.572530004288;KLF4:0.551074871602;GCM1,2:0.546767722744;PAX8:0.521355409863;SOX17:0.509186439892;HLF:0.46970558819;ONECUT1,2:0.455413539323;TFAP2{A,C}:0.439167412747;MZF1:0.434419585964;bHLH_family:0.361753326103;HBP1_HMGB_SSRP1_UBTF:0.359971436003;GTF2I:0.322776353411;SMAD1..7,9:0.307835717564;TFAP2B:0.297969066696;TFAP4:0.290064208367;POU6F1:0.278307222056;NFE2L2:0.274910130823;ZFP161:0.264118534543;NHLH1,2:0.255574469301;HAND1,2:0.223251329014;GFI1B:0.214938501832;PATZ1:0.212520772115;IKZF1:0.191315528575;LHX3,4:0.187284766724;HOXA9_MEIS1:0.179378929272;FOS_FOS{B,L1}_JUN{B,D}:0.173156544603;IRF1,2:0.161934638374;MAZ:0.145986789698;ALX1:0.14580420188;BACH2:0.142766596069;NFE2:0.140313592995;NKX2-2,8:0.136396552471;POU1F1:0.123069356787;NKX3-2:0.106826653862;TFDP1:0.0948918699145;FOXD3:0.0899065462658;CDC5L:0.0785438216434;SREBF1,2:0.0748663327634;SP1:0.0544523222394;MYFfamily:0.0537327601433;POU3F1..4:0.0509681067711;ZNF423:0.0473988650666;NKX2-1,4:0.0452027654702;NKX6-1,2:0.0443939083344;AR:0.0408536310782;FOXP1:0.037926897055;FOSL2:0.0207661957311;RREB1:0.0138593872907;EP300:0.00550394331337;NANOG{mouse}:0.00372066432241;ATF2:-0.00692146324814;TBX4,5:-0.0156768050761;RFX1:-0.0231951327174;REST:-0.038128464438;MED-1{core}:-0.0418615939026;HNF1A:-0.0619339309856;HOX{A6,A7,B6,B7}:-0.0793363405929;HIC1:-0.0830229335992;PAX2:-0.107680058021;NFKB1_REL_RELA:-0.108278946283;PITX1..3:-0.11336588736;TLX2:-0.126362056915;SOX2:-0.160785221345;SOX5:-0.161190522936;RUNX1..3:-0.169020647918;STAT2,4,6:-0.169059643655;ZNF148:-0.178457686318;AHR_ARNT_ARNT2:-0.197526448964;LEF1_TCF7_TCF7L1,2:-0.199055254974;FOX{D1,D2}:-0.20415486005;JUN:-0.208354021735;NFIX:-0.209246400922;CREB1:-0.222655948578;HNF4A_NR2F1,2:-0.228885228563;MEF2{A,B,C,D}:-0.254535346047;PAX3,7:-0.262345253515;FOX{I1,J2}:-0.274082965481;DBP:-0.302369300403;CRX:-0.309500014288;DMAP1_NCOR{1,2}_SMARC:-0.315610800839;EGR1..3:-0.338810698355;ETS1,2:-0.340535126839;MTF1:-0.341045172694;BPTF:-0.352839027046;CDX1,2,4:-0.357046842064;CEBPA,B_DDIT3:-0.38331707299;MYOD1:-0.389863761048;OCT4_SOX2{dimer}:-0.414095527931;POU2F1..3:-0.444573323756;NR1H4:-0.476559280849;NKX2-3_NKX2-5:-0.489546488685;CUX2:-0.491439506048;ZEB1:-0.491847261635;FOXA2:-0.502744907016;ADNP_IRX_SIX_ZHX:-0.516531888562;NR5A1,2:-0.518438651771;MYB:-0.523813848045;LMO2:-0.525676674861;STAT5{A,B}:-0.530823387376;ATF4:-0.557820669246;POU5F1:-0.586080842955;ARID5B:-0.590866119809;NFIL3:-0.600707083441;SPIB:-0.603849827864;ZNF143:-0.634580521847;IRF7:-0.636362582812;SPI1:-0.640776193043;FOXO1,3,4:-0.664759304271;NRF1:-0.679951195485;ATF5_CREB3:-0.683619321137;PRRX1,2:-0.689566043867;T:-0.707683255604;SNAI1..3:-0.708417072354;ELK1,4_GABP{A,B1}:-0.712557752679;YY1:-0.724427109506;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.734567814782;TGIF1:-0.744645046316;ELF1,2,4:-0.74777811087;PAX5:-0.789047669896;GATA6:-0.792715030555;RFX2..5_RFXANK_RFXAP:-0.815610503818;FOXM1:-0.824777450788;SOX{8,9,10}:-0.864680034163;GFI1:-0.867217712173;E2F1..5:-0.885143372069;IKZF2:-0.91289128356;PAX6:-0.930247004777;FOXQ1:-0.970597380085;PDX1:-1.02464606483;FOXN1:-1.02586457271;STAT1,3:-1.02693953928;RXR{A,B,G}_{NR1H2,PPAR}dimers:-1.11291892841;RBPJ:-1.12134092211;VSX1,2:-1.1333322853;RORA:-1.13732071006;NFY{A,B,C}:-1.17766028512;ESRRA:-1.18120514259;FOXP3:-1.27285552892;BREu{core}:-1.28694506941;PBX1:-1.38940193435;NANOG:-1.47107864883;FOX{F1,F2,J1}:-1.74117366573
|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11835-124G8;search_select_hide=table117:FF:11835-124G8
}}
}}

Latest revision as of 18:22, 4 June 2020

Name:mesenchymal precursor cell - ovarian cancer metastasis, donor2
Species:Human (Homo sapiens)
Library ID:CNhs13093
Sample type:primary cells
Genomic View: UCSC
RefEX:Specific genes
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissueovary
dev stageNA
sexNA
ageNA
cell typemesenchymal precursor cell
cell lineNA
companyNA
collaborationClaudio Schneider LNCIB
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot numberNA
catalog numberNA
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-TRIzol-ethanol-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00005040
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs13093 CAGE DRX008560 DRR009432
Accession ID Hg19

Library idBAMCTSS
CNhs13093 DRZ000857 DRZ002242
Accession ID Hg38

Library idBAMCTSS
CNhs13093 DRZ012207 DRZ013592
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis0.153
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma-0.284
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0.49
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19-0.0771
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle0.276
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0.714
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed0.0088
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte-0.0336
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus-0.54
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0.616
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0.31
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0.182
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD80
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth0.504
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small-0.445
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0.182
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0.31
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0.523
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0.409
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0.829
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0.616
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0.756
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs13093

Jaspar motifP-value
MA0002.20.578
MA0003.10.494
MA0004.10.253
MA0006.10.0847
MA0007.10.627
MA0009.10.903
MA0014.10.511
MA0017.10.661
MA0018.22.03108e-4
MA0019.10.474
MA0024.13.22273e-8
MA0025.10.0207
MA0027.10.36
MA0028.11.5489e-4
MA0029.10.63
MA0030.10.0115
MA0031.10.00808
MA0035.20.0598
MA0038.10.00391
MA0039.20.0823
MA0040.10.844
MA0041.10.344
MA0042.10.477
MA0043.12.13607e-4
MA0046.10.0432
MA0047.20.111
MA0048.10.674
MA0050.10.0953
MA0051.10.335
MA0052.10.301
MA0055.10.699
MA0057.10.695
MA0058.10.0426
MA0059.10.724
MA0060.15.96023e-15
MA0061.10.768
MA0062.22.67195e-12
MA0065.20.437
MA0066.10.124
MA0067.10.00592
MA0068.10.775
MA0069.10.05
MA0070.10.429
MA0071.10.611
MA0072.10.21
MA0073.10.418
MA0074.10.224
MA0076.12.9253e-7
MA0077.10.856
MA0078.10.813
MA0079.20.0291
MA0080.22.13838e-8
MA0081.10.00203
MA0083.18.59233e-8
MA0084.10.81
MA0087.10.356
MA0088.10.216
MA0090.10.0123
MA0091.10.0251
MA0092.10.113
MA0093.10.279
MA0099.20.0762
MA0100.10.139
MA0101.10.744
MA0102.20.217
MA0103.10.0487
MA0104.20.00822
MA0105.10.251
MA0106.10.139
MA0107.10.837
MA0108.25.72201e-4
MA0111.10.855
MA0112.20.0048
MA0113.10.619
MA0114.10.636
MA0115.10.0774
MA0116.10.881
MA0117.10.21
MA0119.10.0955
MA0122.10.882
MA0124.10.257
MA0125.10.153
MA0131.10.129
MA0135.10.13
MA0136.15.00458e-12
MA0137.20.00173
MA0138.20.949
MA0139.10.776
MA0140.10.144
MA0141.10.306
MA0142.10.0857
MA0143.10.966
MA0144.10.576
MA0145.10.204
MA0146.10.79
MA0147.10.0325
MA0148.10.116
MA0149.10.761
MA0150.10.993
MA0152.10.0738
MA0153.10.27
MA0154.10.494
MA0155.10.133
MA0156.14.50367e-9
MA0157.10.115
MA0159.10.362
MA0160.10.123
MA0162.10.0248
MA0163.10.0637
MA0164.10.505
MA0258.10.123
MA0259.10.316



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs13093

Novel motifP-value
10.812
100.954
1000.846
1010.832
1020.536
1030.592
1040.823
1050.106
1069.29043e-4
1070.016
1080.0504
1090.779
110.68
1100.458
1110.849
1120.132
1130.809
1140.235
1150.203
1160.0898
1170.816
1180.852
1190.627
120.594
1200.176
1210.757
1220.00433
1230.423
1240.34
1250.274
1260.848
1270.574
1280.231
1290.291
130.51
1300.0606
1310.614
1320.376
1330.764
1340.542
1350.564
1360.645
1370.113
1380.475
1390.679
140.134
1400.283
1410.672
1420.397
1430.313
1440.501
1450.237
1460.445
1470.111
1480.683
1490.121
150.952
1500.227
1510.629
1520.0253
1530.233
1540.797
1550.136
1560.791
1570.87
1580.255
1590.874
160.122
1600.421
1610.667
1620.113
1630.155
1640.0719
1650.618
1660.0526
1670.653
1680.863
1690.0411
170.211
180.101
190.0441
20.36
200.363
210.128
220.553
230.0453
240.395
250.0271
260.48
270.476
280.163
290.43
30.6
300.66
310.813
328.55417e-11
330.83
340.763
350.604
360.0979
370.0493
380.441
390.186
40.76
400.675
410.632
420.243
430.817
440.491
450.973
460.226
470.879
480.71
490.98
50.74
500.435
510.892
520.601
530.302
540.671
550.128
560.867
570.43
580.387
590.298
60.551
600.595
610.619
620.939
630.291
640.615
650.631
660.0281
670.508
680.972
690.986
70.0645
700.0641
710.293
720.326
730.023
740.165
750.821
760.871
770.0633
780.859
791.89779e-4
80.218
800.48
810.743
820.522
830.197
840.617
850.0321
860.986
870.583
880.709
890.193
90.718
900.858
910.695
920.279
930.889
940.362
950.608
960.734
970.513
980.696
990.0129



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs13093


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000723 (somatic stem cell)
0000048 (multi fate stem cell)
0000548 (animal cell)
0002320 (connective tissue cell)
0002371 (somatic cell)
0000219 (motile cell)
0000134 (mesenchymal cell)
0000255 (eukaryotic cell)
0000034 (stem cell)

DOID: Disease
4 (disease)
0050686 (organ system cancer)
162 (cancer)
14566 (disease of cellular proliferation)
193 (reproductive organ cancer)
2394 (ovarian cancer)
120 (female reproductive organ cancer)

UBERON: Anatomy
0002384 (connective tissue)
0000479 (tissue)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0001062 (anatomical entity)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000272 (human ovarian cancer mesenchymal precursor cell sample)
0000274 (human mesenchymal precursor cell- ovarian cancer-metastasis sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000134 (mesenchymal cell)

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