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{{f5samples
{{f5samples
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000922,UBERON:0001737,UBERON:0000926,UBERON:0000479,UBERON:0001007,UBERON:0000064,UBERON:0000077,UBERON:0000062,UBERON:0004120,UBERON:0004119,UBERON:0000061,UBERON:0000465,UBERON:0000063,UBERON:0000480,UBERON:0000923,UBERON:0002050,UBERON:0004921,UBERON:0005423,UBERON:0000477,UBERON:0000481,UBERON:0000467,UBERON:0001062,UBERON:0005291,UBERON:0000072,UBERON:0003104,UBERON:0001048,UBERON:0000925,UBERON:0006598,UBERON:0004185,UBERON:0002532,UBERON:0001555,UBERON:0000065,UBERON:0001004,UBERON:0007026,UBERON:0001041,UBERON:0001557,UBERON:0009142,UBERON:0008947,UBERON:0003258,UBERON:0006595,UBERON:0006603
|DRA_sample_Accession=CAGE@SAMD00005959
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000012,CL:0000063,CL:0000066,CL:0000004,CL:0000255
|accession_numbers=CAGE;DRX007789;DRR008661;DRZ000086;DRZ001471;DRZ011436;DRZ012821
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0001737,UBERON:0000064,UBERON:0004119,UBERON:0000062,UBERON:0000061,UBERON:0000465,UBERON:0000063,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0000072,UBERON:0010317,UBERON:0000065,UBERON:0001004,UBERON:0001557
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000066,CL:0000255
|ancestors_in_disease_facet=DOID:4,DOID:162,DOID:14566,DOID:0050687,DOID:305
|ancestors_in_disease_facet=DOID:4,DOID:162,DOID:14566,DOID:0050687,DOID:305
|ancestors_in_ff_facet=FF:0000102,FF:0000003,FF:0000210,FF:0000101,FF:0000001,FF:0000625,FF:0000350,FF:0000632,FF:0104978,FF:0000639,FF:0100297,FF:0101120,FF:0011134
|comment=
|comment=
|created_by=
|created_by=
|creation_date=
|creation_date=
|data_phase=2
|datafreeze_phase=2
|def=
|def=
|expression_enrichment_score=chr2:238592039..238592054,+!p4@LRRFIP1!1.57!36.10!LRRFIP1;;chr1:201979743..201979762,+!p1@ELF3!1.50!30.41!ELF3;;chr6:10415276..10415341,-!p2@TFAP2A!1.47!34.93!TFAP2A;;chr6:10415484..10415508,-!p3@TFAP2A!1.46!27.86!TFAP2A;;chr6:126240380..126240430,+!p2@NCOA7!1.41!62.40!NCOA7;;chr6:10412600..10412637,-!p1@TFAP2A!1.39!38.85!TFAP2A;;chr5:134369905..134369972,-!p1@PITX1!1.39!35.71!PITX1;;chr1:201979703..201979721,+!p2@ELF3!1.25!16.88!ELF3;;chr5:134369879..134369898,-!p2@PITX1!1.23!15.89!PITX1;;chr12:52445218..52445237,+!p1@NR4A1!1.20!183.66!NR4A1;;chr6:126240442..126240459,+!p4@NCOA7!1.20!19.03!NCOA7;;chr6:1312325..1312340,+!p1@FOXQ1!1.15!21.58!FOXQ1;;chr6:126240463..126240489,+!p6@NCOA7!1.13!13.93!NCOA7;;chr7:101917447..101917479,+!p4@CUX1!1.12!12.17!CUX1;;chr20:6748325..6748352,+!p1@BMP2!1.11!17.27!BMP2;;chr18:55102598..55102623,+!p1@ONECUT2!1.10!11.58!ONECUT2;;chr5:170736243..170736279,+!p1@TLX3!1.09!11.38!TLX3;;chr12:54380036..54380091,+!p4@HOXC10!1.01!9.22!HOXC10;;chr12:54380404..54380433,+!p3@HOXC10!1.00!9.03!HOXC10;;chrX:131624056..131624069,-!p2@MBNL3!0.99!11.97!MBNL3;;chr17:46682321..46682362,-!p1@HOXB6!0.98!8.63!HOXB6;;chr18:55102628..55102646,+!p2@ONECUT2!0.98!8.63!ONECUT2;;chr6:126240356..126240379,+!p7@NCOA7!0.96!10.01!NCOA7;;chr1:44513995..44514031,+!p1@KLF17!0.94!7.65!KLF17;;chr7:101917482..101917507,+!p6@CUX1!0.93!7.46!CUX1;;chr22:19748231..19748317,+!p1@TBX1!0.92!7.26!TBX1;;chr16:29818199..29818216,+!p11@MAZ!0.91!11.97!MAZ;;chr3:69915385..69915438,+!p3@MITF!0.91!7.06!MITF;;chr11:34663913..34663945,+!p6@EHF!0.90!6.87!EHF;;chr9:100615499..100615519,+!p1@FOXE1!0.88!6.67!FOXE1;;chr17:46687959..46688007,-!p2@HOXB7!0.87!9.03!HOXB7;;chr12:54378923..54378966,+!p1@HOXC10!0.87!6.48!HOXC10;;chr5:321810..321877,+!p1@AHRR!0.85!20.21!AHRR;;chr6:10412576..10412599,-!p5@TFAP2A!0.85!6.08!TFAP2A;;chr9:102584262..102584276,+!p1@NR4A3!0.84!13.74!NR4A3;;chr6:1389789..1389821,+!p1@FOXF2!0.84!8.24!FOXF2;;chr10:51572408..51572454,+!p3@NCOA4!0.82!35.32!NCOA4;;chr13:73633131..73633149,+!p1@KLF5!0.79!60.04!KLF5;;chrX:131623044..131623089,-!p1@MBNL3!0.79!23.15!MBNL3;;chr1:151804244..151804310,-!p1@RORC!0.79!5.10!RORC;;chr3:69915369..69915381,+!p4@MITF!0.79!5.10!MITF;;chr6:31126291..31126399,+!p1@TCF19!0.78!52.19!TCF19;;chr17:7492684..7492778,-!p2@SOX15!0.78!11.38!SOX15;;chr12:72056800..72056834,+!p1@THAP2!0.78!7.06!THAP2;;chr17:17726907..17726958,-!p2@SREBF1!0.77!33.16!SREBF1;;chrX:107019163..107019179,-!p7@TSC22D3!0.77!5.69!TSC22D3;;chr5:170736216..170736238,+!p2@TLX3!0.77!4.91!TLX3;;chr1:8938709..8938720,-!p3@ENO1!0.76!256.85!ENO1;;chr12:54332608..54332636,+!p1@HOXC13!0.76!4.71!HOXC13;;chr10:104155659..104155676,+!p4@NFKB2!0.75!5.89!NFKB2;;chr6:10412392..10412409,-!p4@TFAP2A!0.75!5.30!TFAP2A;;chr9:102584159..102584174,+!p2@NR4A3!0.74!8.63!NR4A3;;chr12:54379029..54379057,+!p2@HOXC10!0.74!4.51!HOXC10;;chr20:42295745..42295765,+!p1@MYBL2!0.73!80.25!MYBL2;;chr12:54393880..54393962,+!p1@HOXC9!0.73!4.32!HOXC9;;chr12:2986275..2986363,-!p1@FOXM1!0.69!44.54!FOXM1;;chr12:3068544..3068597,+!p1@TEAD4!0.69!26.49!TEAD4;;chr12:72056773..72056796,+!p3@THAP2!0.69!5.30!THAP2;;chr12:54379477..54379498,+!p5@HOXC5!0.69!3.92!HOXC5;;chr17:46806067..46806097,-!p1@HOXB13!0.69!3.92!HOXB13;;chr7:101917407..101917443,+!p3@CUX1!0.69!3.92!CUX1;;chr7:27224842..27224872,-!p1@HOXA11!0.69!3.92!HOXA11;;chr17:41277372..41277418,-!p1@BRCA1!0.68!15.31!BRCA1;;chrX:131622958..131622978,-!p3@MBNL3!0.68!4.91!MBNL3;;chrX:70503529..70503549,+!p2@NONO!0.67!22.37!NONO;;chr15:67418119..67418162,+!p5@SMAD3!0.67!4.12!SMAD3;;chr12:54410664..54410684,+!p1@HOXC4,p1@HOXC5,p1@HOXC6!0.67!3.73!HOXC5;;chr20:42295713..42295738,+!p2@MYBL2!0.66!24.14!MYBL2;;chr2:157189180..157189290,-!p1@NR4A2!0.66!21.19!NR4A2;;chr1:45805872..45805900,+!p2@TOE1!0.66!9.61!TOE1;;chr10:28034739..28034756,-!p1@MKX!0.66!3.53!MKX;;chr17:26697276..26697303,-!p2@SEBOX,p2@VTN!0.66!3.53!SEBOX;;chr17:8027418..8027432,-!p1@HES7!0.66!3.53!HES7;;chr19:3574157..3574180,+!p4@HMG20B!0.66!3.53!HMG20B;;chr2:45236540..45236577,-!p1@SIX2!0.66!3.53!SIX2;;chr12:80084737..80084763,-!p3@PAWR!0.65!14.72!PAWR;;chr17:46688334..46688385,-!p1@HOXB7!0.65!5.30!HOXB7;;chr15:90294062..90294079,-!p2@MESP1!0.64!3.34!MESP1;;chrX:131623026..131623039,-!p5@MBNL3!0.64!3.34!MBNL3;;chr21:38071430..38071456,+!p1@SIM2!0.64!3.34!SIM2;;chr11:34664014..34664045,+!p4@EHF!0.64!3.34!EHF;;chr11:3400340..3400422,-!p1@ZNF195!0.63!61.61!ZNF195;;chr12:7079780..7079791,-!p2@PHB2!0.63!19.82!PHB2;;chr22:42229210..42229229,+!p3@SREBF2!0.63!8.63!SREBF2;;chr14:37131058..37131139,+!p1@PAX9!0.62!3.14!PAX9;;chr8:55370487..55370503,+!p1@SOX17!0.62!3.14!SOX17;;chrX:107018969..107019024,-!p6@TSC22D3!0.61!4.51!TSC22D3;;chr9:99180617..99180658,-!p1@ZNF367!0.60!7.46!ZNF367;;chr6:126240490..126240501,+!p11@NCOA7!0.60!2.94!NCOA7;;chr6:1389989..1390019,+!p2@FOXF2!0.60!2.94!FOXF2;;chr7:27224795..27224840,-!p2@HOXA11!0.60!2.94!HOXA11;;chr3:138665937..138665968,-!p1@FOXL2!0.60!2.94!FOXL2;;chr12:54379915..54379935,+!p8@HOXC10!0.60!2.94!HOXC10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Line 35: Line 41:
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|name=Hep-2 cells treated with Streptococci strain JRS4, biol_rep2
|name=Hep-2 cells treated with Streptococci strain JRS4, biol_rep2
|namespace=
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Line 42: Line 60:
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|rna_box=125
|rna_catalog_number=
|rna_catalog_number=
Line 54: Line 75:
|rna_rin=9.6
|rna_rin=9.6
|rna_sample_type=total RNA
|rna_sample_type=total RNA
|rna_tube_id=125E5
|rna_tube_id=1.25E+07
|rna_weight_ug=10
|rna_weight_ug=10
|sample_age=56
|sample_age=56
|sample_category=cell lines
|sample_cell_catalog=
|sample_cell_catalog=
|sample_cell_line=Hep-2
|sample_cell_line=Hep-2
Line 77: Line 99:
|sample_tissue=
|sample_tissue=
|top_motifs=ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:1.93863431116;FOXQ1:1.83406428976;RXR{A,B,G}_{NR1H2,PPAR}dimers:1.64374431802;ESRRA:1.58693221729;HES1:1.49625989357;E2F1..5:1.4605221382;NR5A1,2:1.33146511516;FOXM1:1.28164814401;ELK1,4_GABP{A,B1}:1.21108766329;PPARG:1.1281208334;FOXN1:0.935027121916;POU1F1:0.867649183496;NRF1:0.850058831291;HOX{A6,A7,B6,B7}:0.831935157207;NR6A1:0.816204910173;bHLH_family:0.810061216071;YY1:0.809133031221;HIF1A:0.765658768011;MYB:0.669239651724;NFY{A,B,C}:0.638776594063;ZNF143:0.604000047633;HNF4A_NR2F1,2:0.592493648697;NKX3-2:0.572704583538;PAX5:0.534835713345;SNAI1..3:0.527436640539;NKX3-1:0.519836797272;ZEB1:0.51631734217;IKZF1:0.459343737889;TEAD1:0.445567328295;TBX4,5:0.443846049009;IRF7:0.403593280364;PAX1,9:0.373926653035;NFE2L1:0.359406630368;TP53:0.350426819477;ZBTB16:0.346831961975;GCM1,2:0.314372163729;CREB1:0.286543202068;EP300:0.272720130753;ZNF148:0.251623841064;ARID5B:0.238341428286;TEF:0.227217826067;STAT5{A,B}:0.187683224939;GFI1:0.187395728583;FOXD3:0.182182262609;LEF1_TCF7_TCF7L1,2:0.173303766761;ZNF423:0.165157797389;MYOD1:0.161319865552;EN1,2:0.155788804132;HOX{A5,B5}:0.153817492113;POU3F1..4:0.152914961042;CUX2:0.148340575813;UFEwm:0.140694042014;PAX2:0.134710119763;LHX3,4:0.104029778427;NANOG:0.0966560733707;ATF5_CREB3:0.0861383316395;NFE2:0.0723545554117;MYBL2:0.0700595334703;HLF:0.0685867781967;BACH2:0.0656838624163;NFE2L2:0.0520774470355;PAX8:0.0517930888958;FOX{I1,J2}:0.0517297265247;RORA:0.0418913157277;GTF2A1,2:0.0364264730878;PRRX1,2:0.0320313368631;HNF1A:0.0171868639594;VSX1,2:0.0150571062115;FOX{F1,F2,J1}:0.00703491613899;CDC5L:0.00519842872453;GFI1B:-0.000993170498428;HOXA9_MEIS1:-0.00970649716955;GZF1:-0.0133388443809;TFDP1:-0.0314678055766;CDX1,2,4:-0.0552295329521;MEF2{A,B,C,D}:-0.0586617218473;RFX2..5_RFXANK_RFXAP:-0.0633274479806;OCT4_SOX2{dimer}:-0.0669931029591;HAND1,2:-0.0685171279021;ALX4:-0.0697217302099;GLI1..3:-0.070961642101;FOS_FOS{B,L1}_JUN{B,D}:-0.0740663996699;SREBF1,2:-0.0750587504447;BREu{core}:-0.0784770699541;AHR_ARNT_ARNT2:-0.0834882197306;RXR{A,B,G}:-0.0859086466178;SOX{8,9,10}:-0.0905432415779;PITX1..3:-0.121135738148;IKZF2:-0.123131560435;ZNF384:-0.126067012837;NR3C1:-0.128558287784;PAX3,7:-0.139995086751;CEBPA,B_DDIT3:-0.164928314394;DBP:-0.169760916191;LMO2:-0.177560906786;HOX{A4,D4}:-0.182155081488;MTF1:-0.187923517841;MAFB:-0.20152379055;PDX1:-0.203191841914;STAT2,4,6:-0.217013809516;HBP1_HMGB_SSRP1_UBTF:-0.233376749166;HSF1,2:-0.23820292904;NFKB1_REL_RELA:-0.267243458444;ATF6:-0.271630722629;ZBTB6:-0.275261660673;JUN:-0.275268111327;PBX1:-0.275882075719;NR1H4:-0.276480762374;ALX1:-0.283203173204;ELF1,2,4:-0.288713843783;TLX1..3_NFIC{dimer}:-0.294129979407;ONECUT1,2:-0.306944480966;TBP:-0.31580466131;ATF4:-0.327785795673;ESR1:-0.334341230501;PAX6:-0.33480427429;FOSL2:-0.339936201126;TFCP2:-0.340365842959;KLF4:-0.365467310853;FOXL1:-0.373055946835;PAX4:-0.375578347505;GATA6:-0.397978281075;AIRE:-0.413458019536;EBF1:-0.416162325928;IRF1,2:-0.41810173904;CRX:-0.431550927468;RFX1:-0.440729256247;FOXP3:-0.44296872975;NKX2-2,8:-0.459274275093;BPTF:-0.4660032501;SPIB:-0.496058087521;NFIL3:-0.509033266552;AR:-0.520157767315;RBPJ:-0.526321835724;NKX2-1,4:-0.530987117363;SOX17:-0.551502261429;FOXA2:-0.551504251688;T:-0.555013748764;POU2F1..3:-0.566021714713;GTF2I:-0.567073765687;ADNP_IRX_SIX_ZHX:-0.570934955613;TFAP2{A,C}:-0.58853289625;HIC1:-0.593094910547;RXRA_VDR{dimer}:-0.594044651232;NKX2-3_NKX2-5:-0.597190234482;FOXP1:-0.598705153171;EVI1:-0.601871919987;RUNX1..3:-0.632351038819;NHLH1,2:-0.642712804227;NKX6-1,2:-0.655566263757;SPI1:-0.664537129427;HMGA1,2:-0.6902769083;SRF:-0.691878874638;TFAP2B:-0.694266213991;SOX2:-0.743937339359;SP1:-0.745161463489;NFATC1..3:-0.747256891901;POU5F1:-0.74875889895;ETS1,2:-0.759063713296;SOX5:-0.765225159435;REST:-0.766214100461;ZFP161:-0.767033636011;POU6F1:-0.773088280862;MED-1{core}:-0.774967051711;DMAP1_NCOR{1,2}_SMARC:-0.78148173638;FOX{D1,D2}:-0.821970379864;FOXO1,3,4:-0.823986084308;TFAP4:-0.847571565463;XBP1:-0.860067775438;ZIC1..3:-0.918914004702;SMAD1..7,9:-0.925330121356;TAL1_TCF{3,4,12}:-0.932039734429;XCPE1{core}:-0.939517912282;TOPORS:-0.959571583085;RREB1:-0.960551665723;MYFfamily:-0.963034521566;NFIX:-1.00698432491;STAT1,3:-1.02325742752;ZNF238:-1.03279003908;MAZ:-1.03779296761;EGR1..3:-1.07139677652;MTE{core}:-1.0814983659;GATA4:-1.08197567028;ATF2:-1.08443717444;PRDM1:-1.10915474316;TGIF1:-1.11347627686;HMX1:-1.18474720802;MZF1:-1.19262050227;TLX2:-1.38534135449;PATZ1:-1.39461902279;NANOG{mouse}:-1.57440301963;SPZ1:-1.91628952248
|top_motifs=ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:1.93863431116;FOXQ1:1.83406428976;RXR{A,B,G}_{NR1H2,PPAR}dimers:1.64374431802;ESRRA:1.58693221729;HES1:1.49625989357;E2F1..5:1.4605221382;NR5A1,2:1.33146511516;FOXM1:1.28164814401;ELK1,4_GABP{A,B1}:1.21108766329;PPARG:1.1281208334;FOXN1:0.935027121916;POU1F1:0.867649183496;NRF1:0.850058831291;HOX{A6,A7,B6,B7}:0.831935157207;NR6A1:0.816204910173;bHLH_family:0.810061216071;YY1:0.809133031221;HIF1A:0.765658768011;MYB:0.669239651724;NFY{A,B,C}:0.638776594063;ZNF143:0.604000047633;HNF4A_NR2F1,2:0.592493648697;NKX3-2:0.572704583538;PAX5:0.534835713345;SNAI1..3:0.527436640539;NKX3-1:0.519836797272;ZEB1:0.51631734217;IKZF1:0.459343737889;TEAD1:0.445567328295;TBX4,5:0.443846049009;IRF7:0.403593280364;PAX1,9:0.373926653035;NFE2L1:0.359406630368;TP53:0.350426819477;ZBTB16:0.346831961975;GCM1,2:0.314372163729;CREB1:0.286543202068;EP300:0.272720130753;ZNF148:0.251623841064;ARID5B:0.238341428286;TEF:0.227217826067;STAT5{A,B}:0.187683224939;GFI1:0.187395728583;FOXD3:0.182182262609;LEF1_TCF7_TCF7L1,2:0.173303766761;ZNF423:0.165157797389;MYOD1:0.161319865552;EN1,2:0.155788804132;HOX{A5,B5}:0.153817492113;POU3F1..4:0.152914961042;CUX2:0.148340575813;UFEwm:0.140694042014;PAX2:0.134710119763;LHX3,4:0.104029778427;NANOG:0.0966560733707;ATF5_CREB3:0.0861383316395;NFE2:0.0723545554117;MYBL2:0.0700595334703;HLF:0.0685867781967;BACH2:0.0656838624163;NFE2L2:0.0520774470355;PAX8:0.0517930888958;FOX{I1,J2}:0.0517297265247;RORA:0.0418913157277;GTF2A1,2:0.0364264730878;PRRX1,2:0.0320313368631;HNF1A:0.0171868639594;VSX1,2:0.0150571062115;FOX{F1,F2,J1}:0.00703491613899;CDC5L:0.00519842872453;GFI1B:-0.000993170498428;HOXA9_MEIS1:-0.00970649716955;GZF1:-0.0133388443809;TFDP1:-0.0314678055766;CDX1,2,4:-0.0552295329521;MEF2{A,B,C,D}:-0.0586617218473;RFX2..5_RFXANK_RFXAP:-0.0633274479806;OCT4_SOX2{dimer}:-0.0669931029591;HAND1,2:-0.0685171279021;ALX4:-0.0697217302099;GLI1..3:-0.070961642101;FOS_FOS{B,L1}_JUN{B,D}:-0.0740663996699;SREBF1,2:-0.0750587504447;BREu{core}:-0.0784770699541;AHR_ARNT_ARNT2:-0.0834882197306;RXR{A,B,G}:-0.0859086466178;SOX{8,9,10}:-0.0905432415779;PITX1..3:-0.121135738148;IKZF2:-0.123131560435;ZNF384:-0.126067012837;NR3C1:-0.128558287784;PAX3,7:-0.139995086751;CEBPA,B_DDIT3:-0.164928314394;DBP:-0.169760916191;LMO2:-0.177560906786;HOX{A4,D4}:-0.182155081488;MTF1:-0.187923517841;MAFB:-0.20152379055;PDX1:-0.203191841914;STAT2,4,6:-0.217013809516;HBP1_HMGB_SSRP1_UBTF:-0.233376749166;HSF1,2:-0.23820292904;NFKB1_REL_RELA:-0.267243458444;ATF6:-0.271630722629;ZBTB6:-0.275261660673;JUN:-0.275268111327;PBX1:-0.275882075719;NR1H4:-0.276480762374;ALX1:-0.283203173204;ELF1,2,4:-0.288713843783;TLX1..3_NFIC{dimer}:-0.294129979407;ONECUT1,2:-0.306944480966;TBP:-0.31580466131;ATF4:-0.327785795673;ESR1:-0.334341230501;PAX6:-0.33480427429;FOSL2:-0.339936201126;TFCP2:-0.340365842959;KLF4:-0.365467310853;FOXL1:-0.373055946835;PAX4:-0.375578347505;GATA6:-0.397978281075;AIRE:-0.413458019536;EBF1:-0.416162325928;IRF1,2:-0.41810173904;CRX:-0.431550927468;RFX1:-0.440729256247;FOXP3:-0.44296872975;NKX2-2,8:-0.459274275093;BPTF:-0.4660032501;SPIB:-0.496058087521;NFIL3:-0.509033266552;AR:-0.520157767315;RBPJ:-0.526321835724;NKX2-1,4:-0.530987117363;SOX17:-0.551502261429;FOXA2:-0.551504251688;T:-0.555013748764;POU2F1..3:-0.566021714713;GTF2I:-0.567073765687;ADNP_IRX_SIX_ZHX:-0.570934955613;TFAP2{A,C}:-0.58853289625;HIC1:-0.593094910547;RXRA_VDR{dimer}:-0.594044651232;NKX2-3_NKX2-5:-0.597190234482;FOXP1:-0.598705153171;EVI1:-0.601871919987;RUNX1..3:-0.632351038819;NHLH1,2:-0.642712804227;NKX6-1,2:-0.655566263757;SPI1:-0.664537129427;HMGA1,2:-0.6902769083;SRF:-0.691878874638;TFAP2B:-0.694266213991;SOX2:-0.743937339359;SP1:-0.745161463489;NFATC1..3:-0.747256891901;POU5F1:-0.74875889895;ETS1,2:-0.759063713296;SOX5:-0.765225159435;REST:-0.766214100461;ZFP161:-0.767033636011;POU6F1:-0.773088280862;MED-1{core}:-0.774967051711;DMAP1_NCOR{1,2}_SMARC:-0.78148173638;FOX{D1,D2}:-0.821970379864;FOXO1,3,4:-0.823986084308;TFAP4:-0.847571565463;XBP1:-0.860067775438;ZIC1..3:-0.918914004702;SMAD1..7,9:-0.925330121356;TAL1_TCF{3,4,12}:-0.932039734429;XCPE1{core}:-0.939517912282;TOPORS:-0.959571583085;RREB1:-0.960551665723;MYFfamily:-0.963034521566;NFIX:-1.00698432491;STAT1,3:-1.02325742752;ZNF238:-1.03279003908;MAZ:-1.03779296761;EGR1..3:-1.07139677652;MTE{core}:-1.0814983659;GATA4:-1.08197567028;ATF2:-1.08443717444;PRDM1:-1.10915474316;TGIF1:-1.11347627686;HMX1:-1.18474720802;MZF1:-1.19262050227;TLX2:-1.38534135449;PATZ1:-1.39461902279;NANOG{mouse}:-1.57440301963;SPZ1:-1.91628952248
|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11895-125E5;search_select_hide=table117:FF:11895-125E5
}}
}}

Latest revision as of 18:27, 4 June 2020

Name:Hep-2 cells treated with Streptococci strain JRS4, biol_rep2
Species:Human (Homo sapiens)
Library ID:CNhs13498
Sample type:cell lines
Genomic View: UCSC
RefEX:Specific genes
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissueNA
dev stageNA
sexmale
age56
cell typeunclassifiable
cell lineHep-2
companyNA
collaborationChristine Wells (University of Queensland)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot number2b
catalog numberNA
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00005959
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs13498 CAGE DRX007789 DRR008661
Accession ID Hg19

Library idBAMCTSS
CNhs13498 DRZ000086 DRZ001471
Accession ID Hg38

Library idBAMCTSS
CNhs13498 DRZ011436 DRZ012821
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis-0.014
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0.785
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma0.471
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural-0.0396
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19-0.201
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle-0.118
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed0.0543
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte0.0601
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0.0778
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0.726
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus0.187
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory-0.0413
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0.799
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD80
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth0.515
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small0.478
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0.144
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs13498

Jaspar motifP-value
MA0002.20.199
MA0003.10.762
MA0004.10.0585
MA0006.10.547
MA0007.10.527
MA0009.10.554
MA0014.10.383
MA0017.10.135
MA0018.20.772
MA0019.10.797
MA0024.16.50421e-8
MA0025.10.027
MA0027.10.844
MA0028.11.87786e-5
MA0029.10.454
MA0030.10.276
MA0031.10.287
MA0035.20.696
MA0038.10.847
MA0039.20.0608
MA0040.10.484
MA0041.10.33
MA0042.10.394
MA0043.10.134
MA0046.10.765
MA0047.20.735
MA0048.10.117
MA0050.10.0726
MA0051.10.794
MA0052.10.0588
MA0055.19.89264e-5
MA0057.10.238
MA0058.10.0103
MA0059.10.00427
MA0060.10.153
MA0061.10.447
MA0062.20.00785
MA0065.20.00567
MA0066.10.475
MA0067.10.496
MA0068.13.20424e-4
MA0069.10.28
MA0070.10.644
MA0071.10.00788
MA0072.10.561
MA0073.10.225
MA0074.10.394
MA0076.15.36283e-5
MA0077.10.9
MA0078.10.322
MA0079.20.339
MA0080.21.27419e-7
MA0081.10.323
MA0083.10.0072
MA0084.10.282
MA0087.10.459
MA0088.10.0337
MA0090.10.00499
MA0091.10.545
MA0092.10.704
MA0093.10.0295
MA0099.20.633
MA0100.10.267
MA0101.10.404
MA0102.20.523
MA0103.10.00887
MA0104.27.68932e-4
MA0105.10.394
MA0106.10.504
MA0107.10.161
MA0108.20.0512
MA0111.10.608
MA0112.20.00493
MA0113.10.779
MA0114.10.0056
MA0115.10.0477
MA0116.10.167
MA0117.10.83
MA0119.10.625
MA0122.10.86
MA0124.10.984
MA0125.10.524
MA0131.10.54
MA0135.10.832
MA0136.10.0018
MA0137.20.0394
MA0138.20.0851
MA0139.10.63
MA0140.10.711
MA0141.17.53259e-4
MA0142.10.862
MA0143.10.171
MA0144.10.433
MA0145.10.63
MA0146.10.182
MA0147.13.52608e-4
MA0148.10.137
MA0149.10.0269
MA0150.10.633
MA0152.10.678
MA0153.10.0212
MA0154.10.779
MA0155.10.445
MA0156.10.14
MA0157.10.262
MA0159.10.071
MA0160.10.00166
MA0162.10.109
MA0163.10.00474
MA0164.10.272
MA0258.10.3
MA0259.10.0404



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs13498

Novel motifP-value
10.0301
100.0523
1000.0159
1010.203
1020.968
1030.839
1040.743
1050.258
1060.0473
1070.18
1080.645
1099.27522e-4
110.57
1100.213
1110.359
1120.281
1130.00525
1140.465
1150.999
1160.186
1170.149
1180.0502
1190.305
120.702
1200.0849
1210.499
1220.108
1230.315
1240.833
1250.646
1260.749
1270.123
1287.53661e-4
1290.468
131.14885e-4
1300.554
1310.408
1320.877
1330.0979
1340.805
1350.159
1360.0115
1370.167
1380.462
1390.0911
140.555
1400.461
1410.21
1420.674
1430.249
1440.455
1450.336
1460.863
1470.474
1480.415
1490.455
150.358
1500.726
1510.76
1520.671
1530.796
1540.332
1550.617
1560.105
1570.0842
1580.184
1590.139
160.53
1600.243
1610.383
1620.356
1630.196
1640.00924
1650.298
1660.0362
1670.196
1680.182
1690.132
170.862
180.259
190.98
20.555
200.15
210.194
220.902
230.0216
240.427
250.124
260.645
270.867
280.871
290.012
30.801
300.447
310.678
320.167
330.111
340.237
350.876
360.0534
370.261
380.518
390.991
40.149
400.00541
410.166
420.785
430.77
440.0462
450.277
460.748
470.142
480.244
490.385
50.497
500.842
510.722
520.306
530.171
540.6
550.0531
560.902
570.408
580.912
590.995
60.491
600.528
610.0685
620.559
630.34
640.574
650.611
660.614
670.898
680.596
690.875
70.0168
700.874
710.0137
720.991
730.332
740.175
750.115
760.124
770.337
780.0986
790.649
80.0578
800.0802
810.281
820.247
830.84
840.484
850.0574
860.961
870.0044
880.902
890.645
90.606
900.0618
910.0245
920.116
930.204
940.763
950.0234
960.442
970.928
980.465
990.309



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs13498


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000066 (epithelial cell)
0000255 (eukaryotic cell)

DOID: Disease
4 (disease)
162 (cancer)
14566 (disease of cellular proliferation)
0050687 (cell type cancer)
305 (carcinoma)

UBERON: Anatomy
0000468 (multi-cellular organism)
0001737 (larynx)
0000064 (organ part)
0004119 (endoderm-derived structure)
0000062 (organ)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000063 (organ segment)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0000072 (segment of respiratory tract)
0010317 (germ layer / neural crest derived structure)
0000065 (respiratory tract)
0001004 (respiratory system)
0001557 (upper respiratory tract)

FF: FANTOM5
0000102 (sample by type)
0000003 (cell line sample)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0000625 (experimental infection sample)
0000350 (experimentally modified sample)
0000632 (group A streptococci treatment sample)
0104978 (HEp-2 cell sample)
0000639 (Streptococcus strain JRS4 treatment sample)
0100297 (carcinoma cell line sample)
0101120 (epithelial cell line sample)
0011134 (human Hep-2 cells treated with Streptococci strain JRS4 sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
UBERON:0008947 (respiratory primordium)
UBERON:0002532 (epiblast (generic))
UBERON:0006595 (presumptive endoderm)
UBERON:0010316 (germ layer / neural crest)

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