FF:11895-125E5: Difference between revisions
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{{f5samples | {{f5samples | ||
|ancestors_in_anatomy_facet= | |DRA_sample_Accession=CAGE@SAMD00005959 | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL: | |accession_numbers=CAGE;DRX007789;DRR008661;DRZ000086;DRZ001471;DRZ011436;DRZ012821 | ||
|ancestors_in_disease_facet=DOID: | |ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0001737,UBERON:0000064,UBERON:0004119,UBERON:0000062,UBERON:0000061,UBERON:0000465,UBERON:0000063,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0000072,UBERON:0010317,UBERON:0000065,UBERON:0001004,UBERON:0001557 | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000066,CL:0000255 | |||
|ancestors_in_disease_facet=DOID:4,DOID:162,DOID:14566,DOID:0050687,DOID:305 | |||
|ancestors_in_ff_facet=FF:0000102,FF:0000003,FF:0000210,FF:0000101,FF:0000001,FF:0000625,FF:0000350,FF:0000632,FF:0104978,FF:0000639,FF:0100297,FF:0101120,FF:0011134 | |||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|data_phase=2 | |||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score | |||
|fonse_cell_line=FF:0101120 | |fonse_cell_line=FF:0101120 | ||
|fonse_cell_line_closure=FF:0101120 | |fonse_cell_line_closure=FF:0101120 | ||
Line 35: | Line 41: | ||
|fonse_treatment_closure=FF:0000625,FF:0000632,FF:0000639,FF:0011134,FF:11895-125E5 | |fonse_treatment_closure=FF:0000625,FF:0000632,FF:0000639,FF:0011134,FF:11895-125E5 | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/Hep-2%2520cells%2520treated%2520with%2520Streptococci%2520strain%2520JRS4%252c%2520biol_rep2.CNhs13498.11895-125E5.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/Hep-2%2520cells%2520treated%2520with%2520Streptococci%2520strain%2520JRS4%252c%2520biol_rep2.CNhs13498.11895-125E5.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/Hep-2%2520cells%2520treated%2520with%2520Streptococci%2520strain%2520JRS4%252c%2520biol_rep2.CNhs13498.11895-125E5.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/Hep-2%2520cells%2520treated%2520with%2520Streptococci%2520strain%2520JRS4%252c%2520biol_rep2.CNhs13498.11895-125E5.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/Hep-2%2520cells%2520treated%2520with%2520Streptococci%2520strain%2520JRS4%252c%2520biol_rep2.CNhs13498.11895-125E5.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:11895-125E5 | |id=FF:11895-125E5 | ||
|is_a=EFO:0002091;;FF: | |is_a=EFO:0002091;;FF:0011134 | ||
|is_obsolete= | |||
|library_id=CNhs13498 | |||
|library_id_phase_based=2:CNhs13498 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11895 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11895 | |||
|name=Hep-2 cells treated with Streptococci strain JRS4, biol_rep2 | |name=Hep-2 cells treated with Streptococci strain JRS4, biol_rep2 | ||
|namespace= | |namespace= | ||
Line 42: | Line 60: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs13498,LSID1025,release012,COMPLETED | |profile_hcage=CNhs13498,LSID1025,release012,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=,,, | |profile_srnaseq=,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
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| |||
|rna_box=125 | |rna_box=125 | ||
|rna_catalog_number= | |rna_catalog_number= | ||
Line 54: | Line 75: | ||
|rna_rin=9.6 | |rna_rin=9.6 | ||
|rna_sample_type=total RNA | |rna_sample_type=total RNA | ||
|rna_tube_id= | |rna_tube_id=1.25E+07 | ||
|rna_weight_ug=10 | |rna_weight_ug=10 | ||
|sample_age=56 | |sample_age=56 | ||
|sample_category=cell lines | |||
|sample_cell_catalog= | |sample_cell_catalog= | ||
|sample_cell_line=Hep-2 | |sample_cell_line=Hep-2 | ||
Line 69: | Line 91: | ||
|sample_ethnicity= | |sample_ethnicity= | ||
|sample_experimental_condition= | |sample_experimental_condition= | ||
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;1.21500980204551e-257!GO:0005737;cytoplasm;6.44331926081463e-209!GO:0043226;organelle;9.92537395187044e-208!GO:0043229;intracellular organelle;4.71620236425475e-207!GO:0043227;membrane-bound organelle;2.11430863062446e-206!GO:0043231;intracellular membrane-bound organelle;2.59765194776688e-206!GO:0044422;organelle part;1.05446819556489e-177!GO:0044446;intracellular organelle part;1.43316776780998e-175!GO:0044444;cytoplasmic part;2.16609999184775e-154!GO:0032991;macromolecular complex;9.79555030543996e-124!GO:0030529;ribonucleoprotein complex;6.49318898369436e-103!GO:0005739;mitochondrion;2.84868439711974e-99!GO:0044237;cellular metabolic process;4.52290119484103e-94!GO:0044238;primary metabolic process;6.40784055815948e-90!GO:0044428;nuclear part;1.94830567243249e-88!GO:0043233;organelle lumen;4.86363224988645e-88!GO:0031974;membrane-enclosed lumen;4.86363224988645e-88!GO:0003723;RNA binding;4.7061540179871e-84!GO:0005634;nucleus;5.34934975393259e-77!GO:0043170;macromolecule metabolic process;9.47013843958962e-76!GO:0005515;protein binding;3.11702306908366e-67!GO:0044429;mitochondrial part;2.09464936404576e-64!GO:0043234;protein complex;4.95196228066079e-63!GO:0006396;RNA processing;7.60521158887833e-63!GO:0005840;ribosome;2.11603738636331e-61!GO:0031090;organelle membrane;4.20589539856255e-59!GO:0006412;translation;1.2761174719518e-58!GO:0031967;organelle envelope;6.28954631326811e-57!GO:0031975;envelope;9.79655565106852e-57!GO:0003735;structural constituent of ribosome;3.86738169260327e-53!GO:0044249;cellular biosynthetic process;1.74829918795979e-52!GO:0009058;biosynthetic process;3.13482758558025e-52!GO:0031981;nuclear lumen;2.26443020252223e-51!GO:0016043;cellular component organization and biogenesis;6.81260947210852e-49!GO:0033279;ribosomal subunit;1.08945507084473e-46!GO:0019538;protein metabolic process;4.20967811332307e-46!GO:0015031;protein transport;1.65266168947839e-44!GO:0006259;DNA metabolic process;2.67762866716344e-44!GO:0033036;macromolecule localization;1.13111801830816e-43!GO:0043228;non-membrane-bound organelle;1.13111801830816e-43!GO:0043232;intracellular non-membrane-bound organelle;1.13111801830816e-43!GO:0005829;cytosol;1.40132492862888e-43!GO:0016071;mRNA metabolic process;1.47000186824928e-42!GO:0009059;macromolecule biosynthetic process;5.00263734202889e-42!GO:0005740;mitochondrial envelope;1.99323041000655e-41!GO:0044260;cellular macromolecule metabolic process;8.68307171603211e-41!GO:0008380;RNA splicing;9.80147253485145e-41!GO:0044267;cellular protein metabolic process;2.43975754816529e-40!GO:0045184;establishment of protein localization;3.58292027584056e-40!GO:0008104;protein localization;1.25387184583616e-39!GO:0019866;organelle inner membrane;1.70880309701319e-39!GO:0006397;mRNA processing;4.28747588434235e-39!GO:0031966;mitochondrial membrane;4.45351047428151e-39!GO:0022613;ribonucleoprotein complex biogenesis and assembly;2.16820997007292e-38!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;8.13397348865677e-38!GO:0005743;mitochondrial inner membrane;1.54706852571342e-37!GO:0065003;macromolecular complex assembly;5.56302642461751e-37!GO:0043283;biopolymer metabolic process;8.97380885812841e-37!GO:0006996;organelle organization and biogenesis;6.95287778566032e-36!GO:0046907;intracellular transport;2.32245655683787e-35!GO:0007049;cell cycle;6.19986983874089e-34!GO:0010467;gene expression;1.88025060830523e-32!GO:0022607;cellular component assembly;4.02717893566985e-32!GO:0005830;cytosolic ribosome (sensu Eukaryota);2.48491105805983e-31!GO:0005681;spliceosome;4.7545395683604e-30!GO:0005654;nucleoplasm;1.25578717740416e-29!GO:0006886;intracellular protein transport;1.25578717740416e-29!GO:0000166;nucleotide binding;2.50274537888612e-29!GO:0031980;mitochondrial lumen;1.89495414741489e-28!GO:0005759;mitochondrial matrix;1.89495414741489e-28!GO:0006974;response to DNA damage stimulus;1.13778984375913e-27!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;2.4650937653837e-27!GO:0016462;pyrophosphatase activity;2.75806894235311e-27!GO:0016817;hydrolase activity, acting on acid anhydrides;3.45524837949955e-27!GO:0006119;oxidative phosphorylation;2.03249603694419e-26!GO:0044445;cytosolic part;2.11132869570786e-26!GO:0017111;nucleoside-triphosphatase activity;3.37054685956299e-26!GO:0044455;mitochondrial membrane part;5.55863062036821e-26!GO:0015934;large ribosomal subunit;2.69016147781811e-25!GO:0022402;cell cycle process;3.16430170526294e-25!GO:0000278;mitotic cell cycle;3.16430170526294e-25!GO:0005730;nucleolus;5.22797010876408e-25!GO:0005694;chromosome;1.91380536486904e-23!GO:0006281;DNA repair;2.13547501469224e-23!GO:0044451;nucleoplasm part;4.7008214264076e-23!GO:0051186;cofactor metabolic process;6.75529333453507e-23!GO:0051649;establishment of cellular localization;8.00706391490241e-23!GO:0051641;cellular localization;8.14343288300564e-23!GO:0015935;small ribosomal subunit;1.29047643708104e-22!GO:0006457;protein folding;4.41344770817004e-22!GO:0044427;chromosomal part;1.28897479480237e-21!GO:0012505;endomembrane system;1.28897479480237e-21!GO:0009719;response to endogenous stimulus;7.31625077881721e-21!GO:0006260;DNA replication;7.96141382983606e-21!GO:0016874;ligase activity;9.08573740720818e-21!GO:0005783;endoplasmic reticulum;1.06368146690037e-20!GO:0005746;mitochondrial respiratory chain;3.4041285458572e-20!GO:0022403;cell cycle phase;3.6519357519832e-20!GO:0032553;ribonucleotide binding;4.15441917614129e-20!GO:0032555;purine ribonucleotide binding;4.15441917614129e-20!GO:0022618;protein-RNA complex assembly;5.02113098379078e-20!GO:0017076;purine nucleotide binding;5.0585786243753e-20!GO:0005761;mitochondrial ribosome;2.79025813568625e-19!GO:0000313;organellar ribosome;2.79025813568625e-19!GO:0000087;M phase of mitotic cell cycle;3.58323006113146e-19!GO:0042254;ribosome biogenesis and assembly;4.48287250600374e-19!GO:0003676;nucleic acid binding;4.97325029479136e-19!GO:0007067;mitosis;7.17819642788569e-19!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;1.20667017106166e-18!GO:0006732;coenzyme metabolic process;1.57967309781606e-18!GO:0005524;ATP binding;8.54553845536769e-18!GO:0044432;endoplasmic reticulum part;8.59126036003815e-18!GO:0050136;NADH dehydrogenase (quinone) activity;9.29853462509755e-18!GO:0003954;NADH dehydrogenase activity;9.29853462509755e-18!GO:0008137;NADH dehydrogenase (ubiquinone) activity;9.29853462509755e-18!GO:0044248;cellular catabolic process;9.50055567523812e-18!GO:0032559;adenyl ribonucleotide binding;1.09605975178256e-17!GO:0000502;proteasome complex (sensu Eukaryota);1.23135889171661e-17!GO:0016887;ATPase activity;1.37458038755282e-17!GO:0042623;ATPase activity, coupled;1.70410782189827e-17!GO:0030554;adenyl nucleotide binding;2.27413735853496e-17!GO:0008135;translation factor activity, nucleic acid binding;2.50321265134458e-17!GO:0044265;cellular macromolecule catabolic process;2.65224295642017e-17!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);8.03462701085719e-17!GO:0051301;cell division;8.52936727559427e-17!GO:0006512;ubiquitin cycle;9.98724386783139e-17!GO:0000279;M phase;1.65040111801057e-16!GO:0051276;chromosome organization and biogenesis;3.00432142989924e-16!GO:0042775;organelle ATP synthesis coupled electron transport;3.89865550283378e-16!GO:0042773;ATP synthesis coupled electron transport;3.89865550283378e-16!GO:0005635;nuclear envelope;4.93949471769109e-16!GO:0044453;nuclear membrane part;5.6785882463047e-16!GO:0030964;NADH dehydrogenase complex (quinone);8.752569364299e-16!GO:0045271;respiratory chain complex I;8.752569364299e-16!GO:0005747;mitochondrial respiratory chain complex I;8.752569364299e-16!GO:0006605;protein targeting;9.84630350424683e-16!GO:0006399;tRNA metabolic process;1.14969794942299e-15!GO:0051603;proteolysis involved in cellular protein catabolic process;1.4792043902e-15!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;2.70086431105474e-15!GO:0019941;modification-dependent protein catabolic process;2.70086431105474e-15!GO:0043632;modification-dependent macromolecule catabolic process;2.70086431105474e-15!GO:0051082;unfolded protein binding;2.72264930584609e-15!GO:0031965;nuclear membrane;3.53038127657358e-15!GO:0000398;nuclear mRNA splicing, via spliceosome;3.89328276591761e-15!GO:0000375;RNA splicing, via transesterification reactions;3.89328276591761e-15!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;3.89328276591761e-15!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);4.25830544230625e-15!GO:0044257;cellular protein catabolic process;4.25830544230625e-15!GO:0048770;pigment granule;4.36143960323229e-15!GO:0042470;melanosome;4.36143960323229e-15!GO:0006511;ubiquitin-dependent protein catabolic process;6.46639656543038e-15!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;1.63991429964224e-14!GO:0009057;macromolecule catabolic process;2.00494723212461e-14!GO:0043285;biopolymer catabolic process;2.76149711257701e-14!GO:0009055;electron carrier activity;3.3867062982918e-14!GO:0042175;nuclear envelope-endoplasmic reticulum network;3.46490647932677e-14!GO:0005643;nuclear pore;7.05658562412013e-14!GO:0005789;endoplasmic reticulum membrane;9.30462967217837e-14!GO:0003743;translation initiation factor activity;1.87096460248982e-13!GO:0051726;regulation of cell cycle;2.40883724313228e-13!GO:0000074;regulation of progression through cell cycle;2.74598385039992e-13!GO:0006364;rRNA processing;3.65643701630681e-13!GO:0008134;transcription factor binding;4.655808721019e-13!GO:0048193;Golgi vesicle transport;4.655808721019e-13!GO:0006413;translational initiation;5.93076798003072e-13!GO:0051188;cofactor biosynthetic process;5.94682334236779e-13!GO:0009259;ribonucleotide metabolic process;7.31069412678122e-13!GO:0016072;rRNA metabolic process;8.0225290134051e-13!GO:0006325;establishment and/or maintenance of chromatin architecture;1.07979200142595e-12!GO:0065002;intracellular protein transport across a membrane;1.54698889723447e-12!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;1.63706822067261e-12!GO:0006913;nucleocytoplasmic transport;1.74891579027886e-12!GO:0006163;purine nucleotide metabolic process;1.76355325902746e-12!GO:0004386;helicase activity;1.86391352624673e-12!GO:0006323;DNA packaging;3.4266788773602e-12!GO:0000785;chromatin;3.6098088104985e-12!GO:0050657;nucleic acid transport;4.40406520752159e-12!GO:0051236;establishment of RNA localization;4.40406520752159e-12!GO:0050658;RNA transport;4.40406520752159e-12!GO:0006403;RNA localization;4.80593229902753e-12!GO:0051169;nuclear transport;5.96710368219798e-12!GO:0016192;vesicle-mediated transport;6.79717568148326e-12!GO:0030163;protein catabolic process;7.33489734555068e-12!GO:0046930;pore complex;7.68968272264499e-12!GO:0008026;ATP-dependent helicase activity;1.06204089337929e-11!GO:0016604;nuclear body;1.70935361682859e-11!GO:0009150;purine ribonucleotide metabolic process;2.16397275756757e-11!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;2.5085275022859e-11!GO:0009260;ribonucleotide biosynthetic process;3.05655561374258e-11!GO:0016879;ligase activity, forming carbon-nitrogen bonds;3.18576570592636e-11!GO:0006164;purine nucleotide biosynthetic process;3.66629812025827e-11!GO:0012501;programmed cell death;3.87340840179229e-11!GO:0009117;nucleotide metabolic process;3.87418461772276e-11!GO:0006461;protein complex assembly;4.35319547085106e-11!GO:0016491;oxidoreductase activity;4.67608577800794e-11!GO:0006915;apoptosis;5.66604956245421e-11!GO:0009108;coenzyme biosynthetic process;7.26485728687841e-11!GO:0008565;protein transporter activity;7.28576382830439e-11!GO:0005794;Golgi apparatus;9.3056855563478e-11!GO:0006333;chromatin assembly or disassembly;9.46831039966069e-11!GO:0016070;RNA metabolic process;1.27053144946513e-10!GO:0006446;regulation of translational initiation;1.29957714631635e-10!GO:0009060;aerobic respiration;1.69755127013274e-10!GO:0065004;protein-DNA complex assembly;2.00879482381131e-10!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;2.03288504646028e-10!GO:0016787;hydrolase activity;2.37944562522157e-10!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;2.5693232981282e-10!GO:0006261;DNA-dependent DNA replication;2.93958613982801e-10!GO:0051028;mRNA transport;3.0538492994465e-10!GO:0009056;catabolic process;3.16960158866771e-10!GO:0009199;ribonucleoside triphosphate metabolic process;3.16960158866771e-10!GO:0007005;mitochondrion organization and biogenesis;3.16960158866771e-10!GO:0016779;nucleotidyltransferase activity;3.74745729148056e-10!GO:0009141;nucleoside triphosphate metabolic process;3.84875209302399e-10!GO:0009152;purine ribonucleotide biosynthetic process;4.28221622779399e-10!GO:0045333;cellular respiration;5.28348296972783e-10!GO:0008639;small protein conjugating enzyme activity;5.58332896906028e-10!GO:0008219;cell death;5.58332896906028e-10!GO:0016265;death;5.58332896906028e-10!GO:0043412;biopolymer modification;5.75871008011287e-10!GO:0009205;purine ribonucleoside triphosphate metabolic process;7.69641646548461e-10!GO:0009144;purine nucleoside triphosphate metabolic process;7.69641646548461e-10!GO:0030532;small nuclear ribonucleoprotein complex;9.54345406248809e-10!GO:0015986;ATP synthesis coupled proton transport;1.31567538386482e-09!GO:0015985;energy coupled proton transport, down electrochemical gradient;1.31567538386482e-09!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;1.56436527279141e-09!GO:0004812;aminoacyl-tRNA ligase activity;1.56436527279141e-09!GO:0016875;ligase activity, forming carbon-oxygen bonds;1.56436527279141e-09!GO:0004842;ubiquitin-protein ligase activity;1.59398099966148e-09!GO:0019787;small conjugating protein ligase activity;1.90158714591133e-09!GO:0009142;nucleoside triphosphate biosynthetic process;2.20250110414783e-09!GO:0009201;ribonucleoside triphosphate biosynthetic process;2.20250110414783e-09!GO:0003697;single-stranded DNA binding;3.00472556734659e-09!GO:0046034;ATP metabolic process;3.00610134753906e-09!GO:0017038;protein import;3.29418613428823e-09!GO:0043038;amino acid activation;3.29954065117186e-09!GO:0006418;tRNA aminoacylation for protein translation;3.29954065117186e-09!GO:0043039;tRNA aminoacylation;3.29954065117186e-09!GO:0016607;nuclear speck;5.25869108630943e-09!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;5.56592766072734e-09!GO:0009145;purine nucleoside triphosphate biosynthetic process;5.56592766072734e-09!GO:0019829;cation-transporting ATPase activity;5.92790474181404e-09!GO:0043566;structure-specific DNA binding;6.28055269405127e-09!GO:0006366;transcription from RNA polymerase II promoter;6.32795643513365e-09!GO:0006099;tricarboxylic acid cycle;1.02956703423609e-08!GO:0046356;acetyl-CoA catabolic process;1.02956703423609e-08!GO:0016740;transferase activity;1.3068851617623e-08!GO:0006084;acetyl-CoA metabolic process;1.50652421596673e-08!GO:0016881;acid-amino acid ligase activity;1.53249770419034e-08!GO:0006754;ATP biosynthetic process;1.72874542878107e-08!GO:0006753;nucleoside phosphate metabolic process;1.72874542878107e-08!GO:0015078;hydrogen ion transmembrane transporter activity;2.15429612173274e-08!GO:0006091;generation of precursor metabolites and energy;2.18490000499969e-08!GO:0006334;nucleosome assembly;2.59839440495952e-08!GO:0006752;group transfer coenzyme metabolic process;2.97022710028259e-08!GO:0005819;spindle;3.21020382960597e-08!GO:0031497;chromatin assembly;3.21063220038985e-08!GO:0016469;proton-transporting two-sector ATPase complex;3.55878355831518e-08!GO:0005793;ER-Golgi intermediate compartment;4.01434222580572e-08!GO:0000775;chromosome, pericentric region;4.76148028186781e-08!GO:0051329;interphase of mitotic cell cycle;7.06738672492481e-08!GO:0005657;replication fork;7.28953297292255e-08!GO:0006464;protein modification process;7.49965079777941e-08!GO:0003712;transcription cofactor activity;1.0990432052576e-07!GO:0051325;interphase;1.25587798822744e-07!GO:0008033;tRNA processing;1.36724064032763e-07!GO:0051187;cofactor catabolic process;1.39058839079598e-07!GO:0008094;DNA-dependent ATPase activity;1.4746561761047e-07!GO:0005768;endosome;1.5215112751876e-07!GO:0009109;coenzyme catabolic process;2.37109147953368e-07!GO:0042981;regulation of apoptosis;2.42834099595448e-07!GO:0043067;regulation of programmed cell death;2.62542554729808e-07!GO:0006888;ER to Golgi vesicle-mediated transport;2.65390741096977e-07!GO:0045259;proton-transporting ATP synthase complex;2.69815334979528e-07!GO:0003899;DNA-directed RNA polymerase activity;2.95268646388314e-07!GO:0005762;mitochondrial large ribosomal subunit;2.97243878831602e-07!GO:0000315;organellar large ribosomal subunit;2.97243878831602e-07!GO:0000075;cell cycle checkpoint;3.28164351327456e-07!GO:0015630;microtubule cytoskeleton;3.36294854955639e-07!GO:0043623;cellular protein complex assembly;3.53453813221373e-07!GO:0030120;vesicle coat;3.99042545820323e-07!GO:0030662;coated vesicle membrane;3.99042545820323e-07!GO:0005839;proteasome core complex (sensu Eukaryota);4.97198044352009e-07!GO:0008654;phospholipid biosynthetic process;5.0612324894505e-07!GO:0043687;post-translational protein modification;6.00162196438313e-07!GO:0016853;isomerase activity;6.18328473347615e-07!GO:0000245;spliceosome assembly;6.3129611475242e-07!GO:0016568;chromatin modification;6.4241370861004e-07!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;8.19972279338697e-07!GO:0009165;nucleotide biosynthetic process;9.62807221715709e-07!GO:0005667;transcription factor complex;9.74775770136579e-07!GO:0048475;coated membrane;1.05566950178651e-06!GO:0030117;membrane coat;1.05566950178651e-06!GO:0007051;spindle organization and biogenesis;1.07806239527197e-06!GO:0003724;RNA helicase activity;1.30755496069278e-06!GO:0031202;RNA splicing factor activity, transesterification mechanism;1.34914065381325e-06!GO:0032446;protein modification by small protein conjugation;1.72227628752489e-06!GO:0000079;regulation of cyclin-dependent protein kinase activity;1.96671946881933e-06!GO:0051427;hormone receptor binding;2.05218257224136e-06!GO:0004298;threonine endopeptidase activity;2.54054405909153e-06!GO:0051170;nuclear import;2.57468188728356e-06!GO:0016567;protein ubiquitination;2.96118200760599e-06!GO:0000314;organellar small ribosomal subunit;3.31454860749956e-06!GO:0005763;mitochondrial small ribosomal subunit;3.31454860749956e-06!GO:0003924;GTPase activity;3.84838569178451e-06!GO:0006916;anti-apoptosis;4.07113110118895e-06!GO:0015077;monovalent inorganic cation transmembrane transporter activity;4.14119663131615e-06!GO:0000151;ubiquitin ligase complex;4.14119663131615e-06!GO:0051168;nuclear export;4.34585730987707e-06!GO:0035257;nuclear hormone receptor binding;5.01783895450779e-06!GO:0006302;double-strand break repair;5.352953557674e-06!GO:0043069;negative regulation of programmed cell death;5.45123237901955e-06!GO:0006613;cotranslational protein targeting to membrane;6.14370253604813e-06!GO:0051246;regulation of protein metabolic process;6.53077810502721e-06!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;6.61300508549804e-06!GO:0006082;organic acid metabolic process;7.59546979402161e-06!GO:0005813;centrosome;7.93381923329864e-06!GO:0019752;carboxylic acid metabolic process;8.00848969730015e-06!GO:0043066;negative regulation of apoptosis;8.00848969730015e-06!GO:0006606;protein import into nucleus;9.68289896104126e-06!GO:0006414;translational elongation;1.00563686327454e-05!GO:0046474;glycerophospholipid biosynthetic process;1.01829406820023e-05!GO:0044452;nucleolar part;1.03384754845668e-05!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;1.04802459841395e-05!GO:0015399;primary active transmembrane transporter activity;1.04802459841395e-05!GO:0046483;heterocycle metabolic process;1.10816415594365e-05!GO:0048523;negative regulation of cellular process;1.32616488870726e-05!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;1.3972727344222e-05!GO:0005815;microtubule organizing center;1.43488477195699e-05!GO:0007249;I-kappaB kinase/NF-kappaB cascade;1.43909727779367e-05!GO:0045454;cell redox homeostasis;1.68761859147785e-05!GO:0007088;regulation of mitosis;1.96712986884861e-05!GO:0005788;endoplasmic reticulum lumen;2.02075380577855e-05!GO:0015980;energy derivation by oxidation of organic compounds;2.06627483519666e-05!GO:0044440;endosomal part;2.07849035743792e-05!GO:0010008;endosome membrane;2.07849035743792e-05!GO:0005773;vacuole;2.09406105952847e-05!GO:0051052;regulation of DNA metabolic process;2.17672288400036e-05!GO:0006626;protein targeting to mitochondrion;2.30553988668657e-05!GO:0005770;late endosome;2.30687817830319e-05!GO:0016772;transferase activity, transferring phosphorus-containing groups;2.69754238359132e-05!GO:0003682;chromatin binding;2.70305463309256e-05!GO:0008168;methyltransferase activity;2.7408264183509e-05!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;3.13617690655029e-05!GO:0031324;negative regulation of cellular metabolic process;3.42440799122316e-05!GO:0016126;sterol biosynthetic process;3.44507111520064e-05!GO:0016741;transferase activity, transferring one-carbon groups;3.49445363650345e-05!GO:0016627;oxidoreductase activity, acting on the CH-CH group of donors;3.71859493753932e-05!GO:0050662;coenzyme binding;3.95999023226946e-05!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;4.03387781938078e-05!GO:0016859;cis-trans isomerase activity;4.17085692020751e-05!GO:0043021;ribonucleoprotein binding;4.44631683846973e-05!GO:0000786;nucleosome;4.63016726893588e-05!GO:0006839;mitochondrial transport;5.13673580619789e-05!GO:0008186;RNA-dependent ATPase activity;5.20376042457469e-05!GO:0006310;DNA recombination;5.2472751027536e-05!GO:0046489;phosphoinositide biosynthetic process;5.78364796729966e-05!GO:0030867;rough endoplasmic reticulum membrane;6.66728636453506e-05!GO:0000776;kinetochore;6.78104871876971e-05!GO:0005753;mitochondrial proton-transporting ATP synthase complex;6.95158566889735e-05!GO:0043681;protein import into mitochondrion;7.15393588807877e-05!GO:0003713;transcription coactivator activity;7.31988567971752e-05!GO:0004527;exonuclease activity;7.34064774646153e-05!GO:0003684;damaged DNA binding;7.34064774646153e-05!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;7.39845878212731e-05!GO:0005525;GTP binding;7.82336155598202e-05!GO:0045786;negative regulation of progression through cell cycle;8.39873986252931e-05!GO:0005852;eukaryotic translation initiation factor 3 complex;8.43278059869081e-05!GO:0019867;outer membrane;8.43540871629076e-05!GO:0000323;lytic vacuole;8.63070064205419e-05!GO:0005764;lysosome;8.63070064205419e-05!GO:0003690;double-stranded DNA binding;8.78071368847849e-05!GO:0006793;phosphorus metabolic process;8.93840217402551e-05!GO:0006796;phosphate metabolic process;8.93840217402551e-05!GO:0008610;lipid biosynthetic process;0.000115534320930228!GO:0006695;cholesterol biosynthetic process;0.000116810395553865!GO:0031968;organelle outer membrane;0.00011915769537212!GO:0004518;nuclease activity;0.000135322693046296!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;0.000143130599205496!GO:0004004;ATP-dependent RNA helicase activity;0.000145431900873386!GO:0051789;response to protein stimulus;0.000147322812830903!GO:0006986;response to unfolded protein;0.000147322812830903!GO:0009892;negative regulation of metabolic process;0.000149304134419519!GO:0006612;protein targeting to membrane;0.000159636813294527!GO:0000059;protein import into nucleus, docking;0.000179333551719905!GO:0006650;glycerophospholipid metabolic process;0.000183278423961802!GO:0003678;DNA helicase activity;0.000191527700041783!GO:0007059;chromosome segregation;0.000196652510917407!GO:0006383;transcription from RNA polymerase III promoter;0.000210693005715815!GO:0048037;cofactor binding;0.000217725934651293!GO:0048471;perinuclear region of cytoplasm;0.000218572361096495!GO:0005798;Golgi-associated vesicle;0.000225482143942757!GO:0043284;biopolymer biosynthetic process;0.00023029997222437!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.000261739038394823!GO:0042802;identical protein binding;0.000275453297800016!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.000275453297800016!GO:0048519;negative regulation of biological process;0.000313491445809885!GO:0016310;phosphorylation;0.000337537404979211!GO:0006275;regulation of DNA replication;0.000338419644294501!GO:0033116;ER-Golgi intermediate compartment membrane;0.000346522521107728!GO:0043596;nuclear replication fork;0.000355933881285079!GO:0009112;nucleobase metabolic process;0.000367434604292836!GO:0043492;ATPase activity, coupled to movement of substances;0.00039247397256917!GO:0044431;Golgi apparatus part;0.000397663921292603!GO:0005048;signal sequence binding;0.000398738538910197!GO:0006357;regulation of transcription from RNA polymerase II promoter;0.000399412256586988!GO:0006950;response to stress;0.000405177258475318!GO:0016363;nuclear matrix;0.000430025791165971!GO:0003729;mRNA binding;0.000439913983982502!GO:0019843;rRNA binding;0.00044157990172146!GO:0006118;electron transport;0.000444387778534175!GO:0031988;membrane-bound vesicle;0.000451415432807373!GO:0005791;rough endoplasmic reticulum;0.000452663154599569!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.000453224688715376!GO:0051920;peroxiredoxin activity;0.000471004634345147!GO:0031072;heat shock protein binding;0.000481305267235436!GO:0005741;mitochondrial outer membrane;0.000498412895008451!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.000518894704415854!GO:0051287;NAD binding;0.00052589541778896!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.000557667962848251!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.000587055955450729!GO:0000226;microtubule cytoskeleton organization and biogenesis;0.000589717751753616!GO:0005684;U2-dependent spliceosome;0.000592009479304007!GO:0051540;metal cluster binding;0.000636636330897161!GO:0051536;iron-sulfur cluster binding;0.000636636330897161!GO:0015992;proton transport;0.00064864196713277!GO:0044262;cellular carbohydrate metabolic process;0.000668773250707704!GO:0006506;GPI anchor biosynthetic process;0.000677142228649028!GO:0006767;water-soluble vitamin metabolic process;0.000700505853090066!GO:0016563;transcription activator activity;0.000730812027090481!GO:0005885;Arp2/3 protein complex;0.000734371633057642!GO:0016023;cytoplasmic membrane-bound vesicle;0.000740193624593083!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.000752045389712407!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.000752045389712407!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.000752045389712407!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.000757914699365333!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.000757914699365333!GO:0032561;guanyl ribonucleotide binding;0.000770332179482926!GO:0019001;guanyl nucleotide binding;0.000770332179482926!GO:0032508;DNA duplex unwinding;0.000787729974476242!GO:0032392;DNA geometric change;0.000787729974476242!GO:0009116;nucleoside metabolic process;0.000810494195022459!GO:0006520;amino acid metabolic process;0.000810494195022459!GO:0006818;hydrogen transport;0.000816864492081823!GO:0065009;regulation of a molecular function;0.000821529151506873!GO:0046467;membrane lipid biosynthetic process;0.00082445797236573!GO:0016796;exonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters;0.00082487479987014!GO:0030880;RNA polymerase complex;0.000849896218429926!GO:0007006;mitochondrial membrane organization and biogenesis;0.000884958454029878!GO:0030176;integral to endoplasmic reticulum membrane;0.000958975264095687!GO:0007052;mitotic spindle organization and biogenesis;0.000969385972898375!GO:0007093;mitotic cell cycle checkpoint;0.00100112995206173!GO:0006270;DNA replication initiation;0.00103489303679519!GO:0016891;endoribonuclease activity, producing 5'-phosphomonoesters;0.0010359852996727!GO:0006505;GPI anchor metabolic process;0.0010371753800843!GO:0006405;RNA export from nucleus;0.00105634844998739!GO:0051087;chaperone binding;0.0010600436705715!GO:0006284;base-excision repair;0.001061546315555!GO:0030384;phosphoinositide metabolic process;0.00112767592547308!GO:0008361;regulation of cell size;0.00114529281612809!GO:0035258;steroid hormone receptor binding;0.00119246433636683!GO:0003711;transcription elongation regulator activity;0.00121617410413409!GO:0005905;coated pit;0.00123970993660477!GO:0016564;transcription repressor activity;0.0012483884964356!GO:0001558;regulation of cell growth;0.00126024008201178!GO:0016049;cell growth;0.00127357741166752!GO:0030132;clathrin coat of coated pit;0.00127429812993109!GO:0006733;oxidoreduction coenzyme metabolic process;0.00135097062288824!GO:0031252;leading edge;0.00140441577671525!GO:0048500;signal recognition particle;0.00140728670413797!GO:0016628;oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor;0.00144643516158222!GO:0000287;magnesium ion binding;0.00145149385935935!GO:0008312;7S RNA binding;0.0014684378325677!GO:0008408;3'-5' exonuclease activity;0.00148285504827694!GO:0030663;COPI coated vesicle membrane;0.00160073042858009!GO:0030126;COPI vesicle coat;0.00160073042858009!GO:0016893;endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters;0.00163552831496937!GO:0031982;vesicle;0.00164240242835971!GO:0016272;prefoldin complex;0.00164362157849681!GO:0006007;glucose catabolic process;0.00167230794534837!GO:0005769;early endosome;0.00167562842694765!GO:0048487;beta-tubulin binding;0.00172282027877445!GO:0006497;protein amino acid lipidation;0.00173023861577636!GO:0042770;DNA damage response, signal transduction;0.00175670367678029!GO:0000049;tRNA binding;0.00187371570149667!GO:0008180;signalosome;0.00189311100367106!GO:0006268;DNA unwinding during replication;0.00190767846774947!GO:0043601;nuclear replisome;0.00190767846774947!GO:0030894;replisome;0.00190767846774947!GO:0016044;membrane organization and biogenesis;0.00195726049944374!GO:0005876;spindle microtubule;0.00196768786357541!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.00203166340219465!GO:0000428;DNA-directed RNA polymerase complex;0.00203166340219465!GO:0006611;protein export from nucleus;0.00212002304344933!GO:0003746;translation elongation factor activity;0.00237401415339314!GO:0000086;G2/M transition of mitotic cell cycle;0.00244520244092199!GO:0006352;transcription initiation;0.00248188337714692!GO:0000178;exosome (RNase complex);0.00248729260961474!GO:0008632;apoptotic program;0.00249715138429736!GO:0000082;G1/S transition of mitotic cell cycle;0.00257012741725835!GO:0030118;clathrin coat;0.00268951194093522!GO:0004532;exoribonuclease activity;0.00268951194093522!GO:0016896;exoribonuclease activity, producing 5'-phosphomonoesters;0.00268951194093522!GO:0006891;intra-Golgi vesicle-mediated transport;0.00273371033122593!GO:0031410;cytoplasmic vesicle;0.00285982586935291!GO:0000139;Golgi membrane;0.00287242583489723!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.00307179445725767!GO:0015002;heme-copper terminal oxidase activity;0.00307179445725767!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.00307179445725767!GO:0004129;cytochrome-c oxidase activity;0.00307179445725767!GO:0022890;inorganic cation transmembrane transporter activity;0.00308444068112899!GO:0006144;purine base metabolic process;0.00318700525995205!GO:0051252;regulation of RNA metabolic process;0.00320629237338498!GO:0006595;polyamine metabolic process;0.00324600087342012!GO:0009451;RNA modification;0.00328916897164047!GO:0042393;histone binding;0.00340400173951303!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.00340400173951303!GO:0045047;protein targeting to ER;0.00340400173951303!GO:0016281;eukaryotic translation initiation factor 4F complex;0.00344264343754254!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.00370711244923643!GO:0006401;RNA catabolic process;0.00418569923918107!GO:0008320;protein transmembrane transporter activity;0.00418569923918107!GO:0016481;negative regulation of transcription;0.00429543946804896!GO:0000096;sulfur amino acid metabolic process;0.00440637383722796!GO:0030137;COPI-coated vesicle;0.00448613773321936!GO:0000228;nuclear chromosome;0.00461673633718136!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.0046263920637637!GO:0016125;sterol metabolic process;0.00465811528066297!GO:0051539;4 iron, 4 sulfur cluster binding;0.00491843741625547!GO:0004003;ATP-dependent DNA helicase activity;0.00521448649230408!GO:0008629;induction of apoptosis by intracellular signals;0.00523387827674239!GO:0006519;amino acid and derivative metabolic process;0.00527035774846443!GO:0008022;protein C-terminus binding;0.00531870073395828!GO:0006289;nucleotide-excision repair;0.0053545628548229!GO:0048522;positive regulation of cellular process;0.0057351303360894!GO:0031570;DNA integrity checkpoint;0.00576916876789493!GO:0003714;transcription corepressor activity;0.00596346815559872!GO:0015631;tubulin binding;0.00614152844273871!GO:0005637;nuclear inner membrane;0.00617322366774578!GO:0007243;protein kinase cascade;0.00625961709300904!GO:0016408;C-acyltransferase activity;0.0063206886348216!GO:0003725;double-stranded RNA binding;0.0063206886348216!GO:0042158;lipoprotein biosynthetic process;0.00659719573753358!GO:0006509;membrane protein ectodomain proteolysis;0.00662720037941328!GO:0033619;membrane protein proteolysis;0.00662720037941328!GO:0008757;S-adenosylmethionine-dependent methyltransferase activity;0.00664214969840435!GO:0044255;cellular lipid metabolic process;0.00666033217375579!GO:0045792;negative regulation of cell size;0.00667187621252456!GO:0009124;nucleoside monophosphate biosynthetic process;0.00676606918910239!GO:0009123;nucleoside monophosphate metabolic process;0.00676606918910239!GO:0016251;general RNA polymerase II transcription factor activity;0.00688365205168841!GO:0006400;tRNA modification;0.00700269048341091!GO:0006778;porphyrin metabolic process;0.00700680470647715!GO:0033013;tetrapyrrole metabolic process;0.00700680470647715!GO:0046982;protein heterodimerization activity;0.00700680470647715!GO:0030659;cytoplasmic vesicle membrane;0.00701998145752595!GO:0000922;spindle pole;0.00705227147055729!GO:0030658;transport vesicle membrane;0.00706277547631059!GO:0008139;nuclear localization sequence binding;0.00708351148164297!GO:0005758;mitochondrial intermembrane space;0.00729511465130199!GO:0022884;macromolecule transmembrane transporter activity;0.0073114131492024!GO:0015450;P-P-bond-hydrolysis-driven protein transmembrane transporter activity;0.0073114131492024!GO:0016407;acetyltransferase activity;0.00732348791997119!GO:0007010;cytoskeleton organization and biogenesis;0.00737842216472663!GO:0046983;protein dimerization activity;0.00748660968498833!GO:0030308;negative regulation of cell growth;0.0077346740120991!GO:0031124;mRNA 3'-end processing;0.00785537465871206!GO:0000339;RNA cap binding;0.00794849015123988!GO:0016616;oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor;0.00795031288606623!GO:0050790;regulation of catalytic activity;0.00795031288606623!GO:0031902;late endosome membrane;0.0082109496967508!GO:0000725;recombinational repair;0.00822357016999491!GO:0000724;double-strand break repair via homologous recombination;0.00822357016999491!GO:0008637;apoptotic mitochondrial changes;0.00850486780702354!GO:0005832;chaperonin-containing T-complex;0.00885782117373419!GO:0040008;regulation of growth;0.00901267750782552!GO:0006402;mRNA catabolic process;0.0091180818006042!GO:0000175;3'-5'-exoribonuclease activity;0.00923410515071802!GO:0043154;negative regulation of caspase activity;0.00923410515071802!GO:0006338;chromatin remodeling;0.0093799502494242!GO:0051338;regulation of transferase activity;0.00947478693327256!GO:0006100;tricarboxylic acid cycle intermediate metabolic process;0.00952537771599855!GO:0016614;oxidoreductase activity, acting on CH-OH group of donors;0.00962576497054793!GO:0006066;alcohol metabolic process;0.00976324055811751!GO:0007007;inner mitochondrial membrane organization and biogenesis;0.0100544044869595!GO:0043022;ribosome binding;0.0100696359531033!GO:0006979;response to oxidative stress;0.0103017575543498!GO:0030119;AP-type membrane coat adaptor complex;0.0103017575543498!GO:0009119;ribonucleoside metabolic process;0.0103553284097426!GO:0045045;secretory pathway;0.0103766849506881!GO:0004549;tRNA-specific ribonuclease activity;0.0104557185728695!GO:0012506;vesicle membrane;0.0108527600227869!GO:0032259;methylation;0.011231541724724!GO:0043414;biopolymer methylation;0.0112399070672603!GO:0004526;ribonuclease P activity;0.0112780286566675!GO:0043065;positive regulation of apoptosis;0.011571633986998!GO:0030521;androgen receptor signaling pathway;0.0115849278609659!GO:0009303;rRNA transcription;0.0116472050041095!GO:0044438;microbody part;0.0116621653263181!GO:0044439;peroxisomal part;0.0116621653263181!GO:0006807;nitrogen compound metabolic process;0.0116651547849953!GO:0000307;cyclin-dependent protein kinase holoenzyme complex;0.0118306059576694!GO:0008234;cysteine-type peptidase activity;0.0119204658090917!GO:0046966;thyroid hormone receptor binding;0.0119233840978658!GO:0019899;enzyme binding;0.0119233840978658!GO:0030125;clathrin vesicle coat;0.0120907966949044!GO:0030665;clathrin coated vesicle membrane;0.0120907966949044!GO:0006096;glycolysis;0.0121376080452048!GO:0007034;vacuolar transport;0.0122358221989437!GO:0006769;nicotinamide metabolic process;0.0122436369173477!GO:0005774;vacuolar membrane;0.0122878720925504!GO:0030660;Golgi-associated vesicle membrane;0.0123637004821708!GO:0005874;microtubule;0.012372338000991!GO:0008652;amino acid biosynthetic process;0.0128096171745659!GO:0043549;regulation of kinase activity;0.0129493416194358!GO:0000070;mitotic sister chromatid segregation;0.0131474501897873!GO:0007017;microtubule-based process;0.0133340402043568!GO:0030131;clathrin adaptor complex;0.0134302654458441!GO:0050681;androgen receptor binding;0.0135910759728698!GO:0043068;positive regulation of programmed cell death;0.0136119267231953!GO:0004540;ribonuclease activity;0.013681877892335!GO:0016197;endosome transport;0.0137400908194605!GO:0007021;tubulin folding;0.013871059262636!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.0138962331433821!GO:0006740;NADPH regeneration;0.0140425020655513!GO:0006098;pentose-phosphate shunt;0.0140425020655513!GO:0043161;proteasomal ubiquitin-dependent protein catabolic process;0.014095362598629!GO:0004523;ribonuclease H activity;0.0141954675829451!GO:0050178;phenylpyruvate tautomerase activity;0.0145104246947703!GO:0009161;ribonucleoside monophosphate metabolic process;0.0145929768341677!GO:0009156;ribonucleoside monophosphate biosynthetic process;0.0145929768341677!GO:0005862;muscle thin filament tropomyosin;0.0146892235535507!GO:0000819;sister chromatid segregation;0.0149015540582668!GO:0006378;mRNA polyadenylation;0.0149890251115473!GO:0007050;cell cycle arrest;0.015117971942551!GO:0005869;dynactin complex;0.0152641736791349!GO:0044433;cytoplasmic vesicle part;0.015780505641113!GO:0006779;porphyrin biosynthetic process;0.0159384439370505!GO:0033014;tetrapyrrole biosynthetic process;0.0159384439370505!GO:0051053;negative regulation of DNA metabolic process;0.0159878317947865!GO:0005663;DNA replication factor C complex;0.0162727637233665!GO:0031903;microbody membrane;0.0166713543615213!GO:0005778;peroxisomal membrane;0.0166713543615213!GO:0043624;cellular protein complex disassembly;0.0171542249301776!GO:0009003;signal peptidase activity;0.0171774732643647!GO:0016780;phosphotransferase activity, for other substituted phosphate groups;0.0173902894233103!GO:0006417;regulation of translation;0.0174810931717261!GO:0048146;positive regulation of fibroblast proliferation;0.0180416349350279!GO:0005996;monosaccharide metabolic process;0.0182859729740175!GO:0048144;fibroblast proliferation;0.0185363951410234!GO:0048145;regulation of fibroblast proliferation;0.0185363951410234!GO:0032981;mitochondrial respiratory chain complex I assembly;0.0189917132716113!GO:0010257;NADH dehydrogenase complex assembly;0.0189917132716113!GO:0033108;mitochondrial respiratory chain complex assembly;0.0189917132716113!GO:0042719;mitochondrial intermembrane space protein transporter complex;0.0192447737165351!GO:0045039;protein import into mitochondrial inner membrane;0.0192447737165351!GO:0030133;transport vesicle;0.0195983593762047!GO:0046365;monosaccharide catabolic process;0.0198488728190616!GO:0045859;regulation of protein kinase activity;0.0199487745175971!GO:0008538;proteasome activator activity;0.0199487745175971!GO:0019318;hexose metabolic process;0.0200406694549404!GO:0043488;regulation of mRNA stability;0.0201635281202701!GO:0043487;regulation of RNA stability;0.0201635281202701!GO:0005853;eukaryotic translation elongation factor 1 complex;0.0203663897974768!GO:0042168;heme metabolic process;0.0204066769267181!GO:0042364;water-soluble vitamin biosynthetic process;0.0206491486397588!GO:0030508;thiol-disulfide exchange intermediate activity;0.0207418844560471!GO:0009308;amine metabolic process;0.0208370764115542!GO:0006643;membrane lipid metabolic process;0.0210578340648914!GO:0019362;pyridine nucleotide metabolic process;0.0214512976457673!GO:0000726;non-recombinational repair;0.0221118579349845!GO:0031123;RNA 3'-end processing;0.0223790092147894!GO:0043433;negative regulation of transcription factor activity;0.0226006048644583!GO:0016788;hydrolase activity, acting on ester bonds;0.0226742876987884!GO:0046519;sphingoid metabolic process;0.0230659600217097!GO:0006360;transcription from RNA polymerase I promoter;0.0237882302224399!GO:0000077;DNA damage checkpoint;0.0238773725027237!GO:0004576;oligosaccharyl transferase activity;0.0238773725027237!GO:0006354;RNA elongation;0.0241785377994636!GO:0008250;oligosaccharyl transferase complex;0.0241785377994636!GO:0000030;mannosyltransferase activity;0.0241785377994636!GO:0031970;organelle envelope lumen;0.0241939830523471!GO:0008299;isoprenoid biosynthetic process;0.0247050415042863!GO:0044437;vacuolar part;0.0251934670298408!GO:0006213;pyrimidine nucleoside metabolic process;0.0253149730718932!GO:0006730;one-carbon compound metabolic process;0.0255515521074785!GO:0006376;mRNA splice site selection;0.0255515521074785!GO:0000389;nuclear mRNA 3'-splice site recognition;0.0255515521074785!GO:0006006;glucose metabolic process;0.0257322885549358!GO:0051059;NF-kappaB binding;0.025750570938256!GO:0003923;GPI-anchor transamidase activity;0.025750570938256!GO:0016255;attachment of GPI anchor to protein;0.025750570938256!GO:0042765;GPI-anchor transamidase complex;0.025750570938256!GO:0006672;ceramide metabolic process;0.0260285414049823!GO:0045926;negative regulation of growth;0.0260689047964281!GO:0005744;mitochondrial inner membrane presequence translocase complex;0.0261122404613587!GO:0022406;membrane docking;0.0263122025434804!GO:0048278;vesicle docking;0.0263122025434804!GO:0043189;H4/H2A histone acetyltransferase complex;0.0264230391131959!GO:0008203;cholesterol metabolic process;0.0268407713712267!GO:0016903;oxidoreductase activity, acting on the aldehyde or oxo group of donors;0.0270177934160719!GO:0046164;alcohol catabolic process;0.0272091940386326!GO:0009081;branched chain family amino acid metabolic process;0.0272999395155723!GO:0044454;nuclear chromosome part;0.0275622391238108!GO:0032984;macromolecular complex disassembly;0.0279521792393021!GO:0000152;nuclear ubiquitin ligase complex;0.0279966523347942!GO:0005658;alpha DNA polymerase:primase complex;0.0281503023158775!GO:0019205;nucleobase, nucleoside, nucleotide kinase activity;0.0281513196999204!GO:0030134;ER to Golgi transport vesicle;0.0284400498775349!GO:0051716;cellular response to stimulus;0.0291023759683641!GO:0016667;oxidoreductase activity, acting on sulfur group of donors;0.0292231411474126!GO:0031406;carboxylic acid binding;0.0293426223947858!GO:0006644;phospholipid metabolic process;0.0293440062030551!GO:0031529;ruffle organization and biogenesis;0.0294907549764235!GO:0050811;GABA receptor binding;0.0302056910844642!GO:0031326;regulation of cellular biosynthetic process;0.0302065704619454!GO:0004659;prenyltransferase activity;0.0302536450523713!GO:0017166;vinculin binding;0.0306473275701825!GO:0005669;transcription factor TFIID complex;0.0307764864628913!GO:0005850;eukaryotic translation initiation factor 2 complex;0.0308941202858637!GO:0005777;peroxisome;0.0310371815465847!GO:0042579;microbody;0.0310371815465847!GO:0009889;regulation of biosynthetic process;0.0310950133795649!GO:0019320;hexose catabolic process;0.0311874207371751!GO:0004860;protein kinase inhibitor activity;0.0314216640551088!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.0316249929923279!GO:0016790;thiolester hydrolase activity;0.0316362497224812!GO:0046128;purine ribonucleoside metabolic process;0.0316558928983256!GO:0042278;purine nucleoside metabolic process;0.0316558928983256!GO:0005665;DNA-directed RNA polymerase II, core complex;0.0321837511413034!GO:0007040;lysosome organization and biogenesis;0.032333598349042!GO:0006596;polyamine biosynthetic process;0.0324032677671842!GO:0015036;disulfide oxidoreductase activity;0.032457468022696!GO:0005732;small nucleolar ribonucleoprotein complex;0.032482392041222!GO:0003857;3-hydroxyacyl-CoA dehydrogenase activity;0.0329766257025758!GO:0004448;isocitrate dehydrogenase activity;0.0330238068733216!GO:0008017;microtubule binding;0.0333589862813199!GO:0006541;glutamine metabolic process;0.0339224096193421!GO:0008092;cytoskeletal protein binding;0.0339470521299722!GO:0030127;COPII vesicle coat;0.0340016384738012!GO:0012507;ER to Golgi transport vesicle membrane;0.0340016384738012!GO:0006368;RNA elongation from RNA polymerase II promoter;0.0343805553100852!GO:0006739;NADP metabolic process;0.0344587920961234!GO:0007041;lysosomal transport;0.0345286340578786!GO:0035267;NuA4 histone acetyltransferase complex;0.0352704544081189!GO:0005784;translocon complex;0.035443386053256!GO:0045893;positive regulation of transcription, DNA-dependent;0.035443386053256!GO:0019783;small conjugating protein-specific protease activity;0.0354642518604229!GO:0006220;pyrimidine nucleotide metabolic process;0.0354759810825305!GO:0004748;ribonucleoside-diphosphate reductase activity;0.0355370546886881!GO:0016728;oxidoreductase activity, acting on CH or CH2 groups, disulfide as acceptor;0.0355370546886881!GO:0006904;vesicle docking during exocytosis;0.0360698114008442!GO:0007346;regulation of progression through mitotic cell cycle;0.0361792293299036!GO:0003702;RNA polymerase II transcription factor activity;0.0362087658702108!GO:0031577;spindle checkpoint;0.0363717820037245!GO:0008536;Ran GTPase binding;0.0364001753739013!GO:0046112;nucleobase biosynthetic process;0.0364157856809717!GO:0000910;cytokinesis;0.0370076591159182!GO:0006629;lipid metabolic process;0.0370076591159182!GO:0016417;S-acyltransferase activity;0.0370451972637335!GO:0042769;DNA damage response, detection of DNA damage;0.0372120627296932!GO:0001836;release of cytochrome c from mitochondria;0.0372120627296932!GO:0040029;regulation of gene expression, epigenetic;0.0375888352751645!GO:0006356;regulation of transcription from RNA polymerase I promoter;0.0376017129751111!GO:0003985;acetyl-CoA C-acetyltransferase activity;0.0383923855804337!GO:0032200;telomere organization and biogenesis;0.0384883265144045!GO:0000723;telomere maintenance;0.0384883265144045!GO:0004861;cyclin-dependent protein kinase inhibitor activity;0.0385849306505599!GO:0008156;negative regulation of DNA replication;0.0386859350835422!GO:0022411;cellular component disassembly;0.0386859350835422!GO:0006749;glutathione metabolic process;0.0390198037614399!GO:0031227;intrinsic to endoplasmic reticulum membrane;0.0393429983371947!GO:0043241;protein complex disassembly;0.0393429983371947!GO:0009225;nucleotide-sugar metabolic process;0.040101810713587!GO:0019206;nucleoside kinase activity;0.0404837399156882!GO:0004536;deoxyribonuclease activity;0.0407640034487226!GO:0006308;DNA catabolic process;0.0410900493338962!GO:0005765;lysosomal membrane;0.0413993765509181!GO:0005971;ribonucleoside-diphosphate reductase complex;0.0419755094428415!GO:0009066;aspartate family amino acid metabolic process;0.0420730339604221!GO:0006518;peptide metabolic process;0.0421678783937267!GO:0004843;ubiquitin-specific protease activity;0.0423609559782873!GO:0031625;ubiquitin protein ligase binding;0.0425362432623409!GO:0009967;positive regulation of signal transduction;0.0425430478972004!GO:0003887;DNA-directed DNA polymerase activity;0.0429329236480988!GO:0007004;telomere maintenance via telomerase;0.0429494338346107!GO:0030503;regulation of cell redox homeostasis;0.0430657863534418!GO:0030032;lamellipodium biogenesis;0.0433767494179437!GO:0005754;mitochondrial proton-transporting ATP synthase, catalytic core;0.0433767494179437!GO:0000275;mitochondrial proton-transporting ATP synthase complex, catalytic core F(1);0.0433767494179437!GO:0045267;proton-transporting ATP synthase, catalytic core;0.0433767494179437!GO:0031371;ubiquitin conjugating enzyme complex;0.0433798935229056!GO:0003756;protein disulfide isomerase activity;0.0437292365955039!GO:0016864;intramolecular oxidoreductase activity, transposing S-S bonds;0.0437292365955039!GO:0008601;protein phosphatase type 2A regulator activity;0.0439714828221152!GO:0006406;mRNA export from nucleus;0.0454590851098451!GO:0006783;heme biosynthetic process;0.0454590851098451!GO:0016453;C-acetyltransferase activity;0.0460140412730888!GO:0000123;histone acetyltransferase complex;0.0462182815416647!GO:0004674;protein serine/threonine kinase activity;0.046473696447757!GO:0016791;phosphoric monoester hydrolase activity;0.0466360691597994!GO:0008426;protein kinase C inhibitor activity;0.0469183646138109!GO:0030911;TPR domain binding;0.0473786903025953!GO:0030027;lamellipodium;0.0479483793903171!GO:0007033;vacuole organization and biogenesis;0.0479483793903171!GO:0030677;ribonuclease P complex;0.048405344577635!GO:0030036;actin cytoskeleton organization and biogenesis;0.0487538253924855!GO:0030433;ER-associated protein catabolic process;0.0487538253924855!GO:0006515;misfolded or incompletely synthesized protein catabolic process;0.0487538253924855!GO:0008287;protein serine/threonine phosphatase complex;0.0488877413560584!GO:0030330;DNA damage response, signal transduction by p53 class mediator;0.0490555572022279!GO:0009396;folic acid and derivative biosynthetic process;0.0490555572022279!GO:0016706;oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors;0.0494345859018101!GO:0016620;oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor;0.0499079455942914 | |||
|sample_id=11895 | |sample_id=11895 | ||
|sample_note= | |sample_note= | ||
Line 76: | Line 99: | ||
|sample_tissue= | |sample_tissue= | ||
|top_motifs=ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:1.93863431116;FOXQ1:1.83406428976;RXR{A,B,G}_{NR1H2,PPAR}dimers:1.64374431802;ESRRA:1.58693221729;HES1:1.49625989357;E2F1..5:1.4605221382;NR5A1,2:1.33146511516;FOXM1:1.28164814401;ELK1,4_GABP{A,B1}:1.21108766329;PPARG:1.1281208334;FOXN1:0.935027121916;POU1F1:0.867649183496;NRF1:0.850058831291;HOX{A6,A7,B6,B7}:0.831935157207;NR6A1:0.816204910173;bHLH_family:0.810061216071;YY1:0.809133031221;HIF1A:0.765658768011;MYB:0.669239651724;NFY{A,B,C}:0.638776594063;ZNF143:0.604000047633;HNF4A_NR2F1,2:0.592493648697;NKX3-2:0.572704583538;PAX5:0.534835713345;SNAI1..3:0.527436640539;NKX3-1:0.519836797272;ZEB1:0.51631734217;IKZF1:0.459343737889;TEAD1:0.445567328295;TBX4,5:0.443846049009;IRF7:0.403593280364;PAX1,9:0.373926653035;NFE2L1:0.359406630368;TP53:0.350426819477;ZBTB16:0.346831961975;GCM1,2:0.314372163729;CREB1:0.286543202068;EP300:0.272720130753;ZNF148:0.251623841064;ARID5B:0.238341428286;TEF:0.227217826067;STAT5{A,B}:0.187683224939;GFI1:0.187395728583;FOXD3:0.182182262609;LEF1_TCF7_TCF7L1,2:0.173303766761;ZNF423:0.165157797389;MYOD1:0.161319865552;EN1,2:0.155788804132;HOX{A5,B5}:0.153817492113;POU3F1..4:0.152914961042;CUX2:0.148340575813;UFEwm:0.140694042014;PAX2:0.134710119763;LHX3,4:0.104029778427;NANOG:0.0966560733707;ATF5_CREB3:0.0861383316395;NFE2:0.0723545554117;MYBL2:0.0700595334703;HLF:0.0685867781967;BACH2:0.0656838624163;NFE2L2:0.0520774470355;PAX8:0.0517930888958;FOX{I1,J2}:0.0517297265247;RORA:0.0418913157277;GTF2A1,2:0.0364264730878;PRRX1,2:0.0320313368631;HNF1A:0.0171868639594;VSX1,2:0.0150571062115;FOX{F1,F2,J1}:0.00703491613899;CDC5L:0.00519842872453;GFI1B:-0.000993170498428;HOXA9_MEIS1:-0.00970649716955;GZF1:-0.0133388443809;TFDP1:-0.0314678055766;CDX1,2,4:-0.0552295329521;MEF2{A,B,C,D}:-0.0586617218473;RFX2..5_RFXANK_RFXAP:-0.0633274479806;OCT4_SOX2{dimer}:-0.0669931029591;HAND1,2:-0.0685171279021;ALX4:-0.0697217302099;GLI1..3:-0.070961642101;FOS_FOS{B,L1}_JUN{B,D}:-0.0740663996699;SREBF1,2:-0.0750587504447;BREu{core}:-0.0784770699541;AHR_ARNT_ARNT2:-0.0834882197306;RXR{A,B,G}:-0.0859086466178;SOX{8,9,10}:-0.0905432415779;PITX1..3:-0.121135738148;IKZF2:-0.123131560435;ZNF384:-0.126067012837;NR3C1:-0.128558287784;PAX3,7:-0.139995086751;CEBPA,B_DDIT3:-0.164928314394;DBP:-0.169760916191;LMO2:-0.177560906786;HOX{A4,D4}:-0.182155081488;MTF1:-0.187923517841;MAFB:-0.20152379055;PDX1:-0.203191841914;STAT2,4,6:-0.217013809516;HBP1_HMGB_SSRP1_UBTF:-0.233376749166;HSF1,2:-0.23820292904;NFKB1_REL_RELA:-0.267243458444;ATF6:-0.271630722629;ZBTB6:-0.275261660673;JUN:-0.275268111327;PBX1:-0.275882075719;NR1H4:-0.276480762374;ALX1:-0.283203173204;ELF1,2,4:-0.288713843783;TLX1..3_NFIC{dimer}:-0.294129979407;ONECUT1,2:-0.306944480966;TBP:-0.31580466131;ATF4:-0.327785795673;ESR1:-0.334341230501;PAX6:-0.33480427429;FOSL2:-0.339936201126;TFCP2:-0.340365842959;KLF4:-0.365467310853;FOXL1:-0.373055946835;PAX4:-0.375578347505;GATA6:-0.397978281075;AIRE:-0.413458019536;EBF1:-0.416162325928;IRF1,2:-0.41810173904;CRX:-0.431550927468;RFX1:-0.440729256247;FOXP3:-0.44296872975;NKX2-2,8:-0.459274275093;BPTF:-0.4660032501;SPIB:-0.496058087521;NFIL3:-0.509033266552;AR:-0.520157767315;RBPJ:-0.526321835724;NKX2-1,4:-0.530987117363;SOX17:-0.551502261429;FOXA2:-0.551504251688;T:-0.555013748764;POU2F1..3:-0.566021714713;GTF2I:-0.567073765687;ADNP_IRX_SIX_ZHX:-0.570934955613;TFAP2{A,C}:-0.58853289625;HIC1:-0.593094910547;RXRA_VDR{dimer}:-0.594044651232;NKX2-3_NKX2-5:-0.597190234482;FOXP1:-0.598705153171;EVI1:-0.601871919987;RUNX1..3:-0.632351038819;NHLH1,2:-0.642712804227;NKX6-1,2:-0.655566263757;SPI1:-0.664537129427;HMGA1,2:-0.6902769083;SRF:-0.691878874638;TFAP2B:-0.694266213991;SOX2:-0.743937339359;SP1:-0.745161463489;NFATC1..3:-0.747256891901;POU5F1:-0.74875889895;ETS1,2:-0.759063713296;SOX5:-0.765225159435;REST:-0.766214100461;ZFP161:-0.767033636011;POU6F1:-0.773088280862;MED-1{core}:-0.774967051711;DMAP1_NCOR{1,2}_SMARC:-0.78148173638;FOX{D1,D2}:-0.821970379864;FOXO1,3,4:-0.823986084308;TFAP4:-0.847571565463;XBP1:-0.860067775438;ZIC1..3:-0.918914004702;SMAD1..7,9:-0.925330121356;TAL1_TCF{3,4,12}:-0.932039734429;XCPE1{core}:-0.939517912282;TOPORS:-0.959571583085;RREB1:-0.960551665723;MYFfamily:-0.963034521566;NFIX:-1.00698432491;STAT1,3:-1.02325742752;ZNF238:-1.03279003908;MAZ:-1.03779296761;EGR1..3:-1.07139677652;MTE{core}:-1.0814983659;GATA4:-1.08197567028;ATF2:-1.08443717444;PRDM1:-1.10915474316;TGIF1:-1.11347627686;HMX1:-1.18474720802;MZF1:-1.19262050227;TLX2:-1.38534135449;PATZ1:-1.39461902279;NANOG{mouse}:-1.57440301963;SPZ1:-1.91628952248 | |top_motifs=ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:1.93863431116;FOXQ1:1.83406428976;RXR{A,B,G}_{NR1H2,PPAR}dimers:1.64374431802;ESRRA:1.58693221729;HES1:1.49625989357;E2F1..5:1.4605221382;NR5A1,2:1.33146511516;FOXM1:1.28164814401;ELK1,4_GABP{A,B1}:1.21108766329;PPARG:1.1281208334;FOXN1:0.935027121916;POU1F1:0.867649183496;NRF1:0.850058831291;HOX{A6,A7,B6,B7}:0.831935157207;NR6A1:0.816204910173;bHLH_family:0.810061216071;YY1:0.809133031221;HIF1A:0.765658768011;MYB:0.669239651724;NFY{A,B,C}:0.638776594063;ZNF143:0.604000047633;HNF4A_NR2F1,2:0.592493648697;NKX3-2:0.572704583538;PAX5:0.534835713345;SNAI1..3:0.527436640539;NKX3-1:0.519836797272;ZEB1:0.51631734217;IKZF1:0.459343737889;TEAD1:0.445567328295;TBX4,5:0.443846049009;IRF7:0.403593280364;PAX1,9:0.373926653035;NFE2L1:0.359406630368;TP53:0.350426819477;ZBTB16:0.346831961975;GCM1,2:0.314372163729;CREB1:0.286543202068;EP300:0.272720130753;ZNF148:0.251623841064;ARID5B:0.238341428286;TEF:0.227217826067;STAT5{A,B}:0.187683224939;GFI1:0.187395728583;FOXD3:0.182182262609;LEF1_TCF7_TCF7L1,2:0.173303766761;ZNF423:0.165157797389;MYOD1:0.161319865552;EN1,2:0.155788804132;HOX{A5,B5}:0.153817492113;POU3F1..4:0.152914961042;CUX2:0.148340575813;UFEwm:0.140694042014;PAX2:0.134710119763;LHX3,4:0.104029778427;NANOG:0.0966560733707;ATF5_CREB3:0.0861383316395;NFE2:0.0723545554117;MYBL2:0.0700595334703;HLF:0.0685867781967;BACH2:0.0656838624163;NFE2L2:0.0520774470355;PAX8:0.0517930888958;FOX{I1,J2}:0.0517297265247;RORA:0.0418913157277;GTF2A1,2:0.0364264730878;PRRX1,2:0.0320313368631;HNF1A:0.0171868639594;VSX1,2:0.0150571062115;FOX{F1,F2,J1}:0.00703491613899;CDC5L:0.00519842872453;GFI1B:-0.000993170498428;HOXA9_MEIS1:-0.00970649716955;GZF1:-0.0133388443809;TFDP1:-0.0314678055766;CDX1,2,4:-0.0552295329521;MEF2{A,B,C,D}:-0.0586617218473;RFX2..5_RFXANK_RFXAP:-0.0633274479806;OCT4_SOX2{dimer}:-0.0669931029591;HAND1,2:-0.0685171279021;ALX4:-0.0697217302099;GLI1..3:-0.070961642101;FOS_FOS{B,L1}_JUN{B,D}:-0.0740663996699;SREBF1,2:-0.0750587504447;BREu{core}:-0.0784770699541;AHR_ARNT_ARNT2:-0.0834882197306;RXR{A,B,G}:-0.0859086466178;SOX{8,9,10}:-0.0905432415779;PITX1..3:-0.121135738148;IKZF2:-0.123131560435;ZNF384:-0.126067012837;NR3C1:-0.128558287784;PAX3,7:-0.139995086751;CEBPA,B_DDIT3:-0.164928314394;DBP:-0.169760916191;LMO2:-0.177560906786;HOX{A4,D4}:-0.182155081488;MTF1:-0.187923517841;MAFB:-0.20152379055;PDX1:-0.203191841914;STAT2,4,6:-0.217013809516;HBP1_HMGB_SSRP1_UBTF:-0.233376749166;HSF1,2:-0.23820292904;NFKB1_REL_RELA:-0.267243458444;ATF6:-0.271630722629;ZBTB6:-0.275261660673;JUN:-0.275268111327;PBX1:-0.275882075719;NR1H4:-0.276480762374;ALX1:-0.283203173204;ELF1,2,4:-0.288713843783;TLX1..3_NFIC{dimer}:-0.294129979407;ONECUT1,2:-0.306944480966;TBP:-0.31580466131;ATF4:-0.327785795673;ESR1:-0.334341230501;PAX6:-0.33480427429;FOSL2:-0.339936201126;TFCP2:-0.340365842959;KLF4:-0.365467310853;FOXL1:-0.373055946835;PAX4:-0.375578347505;GATA6:-0.397978281075;AIRE:-0.413458019536;EBF1:-0.416162325928;IRF1,2:-0.41810173904;CRX:-0.431550927468;RFX1:-0.440729256247;FOXP3:-0.44296872975;NKX2-2,8:-0.459274275093;BPTF:-0.4660032501;SPIB:-0.496058087521;NFIL3:-0.509033266552;AR:-0.520157767315;RBPJ:-0.526321835724;NKX2-1,4:-0.530987117363;SOX17:-0.551502261429;FOXA2:-0.551504251688;T:-0.555013748764;POU2F1..3:-0.566021714713;GTF2I:-0.567073765687;ADNP_IRX_SIX_ZHX:-0.570934955613;TFAP2{A,C}:-0.58853289625;HIC1:-0.593094910547;RXRA_VDR{dimer}:-0.594044651232;NKX2-3_NKX2-5:-0.597190234482;FOXP1:-0.598705153171;EVI1:-0.601871919987;RUNX1..3:-0.632351038819;NHLH1,2:-0.642712804227;NKX6-1,2:-0.655566263757;SPI1:-0.664537129427;HMGA1,2:-0.6902769083;SRF:-0.691878874638;TFAP2B:-0.694266213991;SOX2:-0.743937339359;SP1:-0.745161463489;NFATC1..3:-0.747256891901;POU5F1:-0.74875889895;ETS1,2:-0.759063713296;SOX5:-0.765225159435;REST:-0.766214100461;ZFP161:-0.767033636011;POU6F1:-0.773088280862;MED-1{core}:-0.774967051711;DMAP1_NCOR{1,2}_SMARC:-0.78148173638;FOX{D1,D2}:-0.821970379864;FOXO1,3,4:-0.823986084308;TFAP4:-0.847571565463;XBP1:-0.860067775438;ZIC1..3:-0.918914004702;SMAD1..7,9:-0.925330121356;TAL1_TCF{3,4,12}:-0.932039734429;XCPE1{core}:-0.939517912282;TOPORS:-0.959571583085;RREB1:-0.960551665723;MYFfamily:-0.963034521566;NFIX:-1.00698432491;STAT1,3:-1.02325742752;ZNF238:-1.03279003908;MAZ:-1.03779296761;EGR1..3:-1.07139677652;MTE{core}:-1.0814983659;GATA4:-1.08197567028;ATF2:-1.08443717444;PRDM1:-1.10915474316;TGIF1:-1.11347627686;HMX1:-1.18474720802;MZF1:-1.19262050227;TLX2:-1.38534135449;PATZ1:-1.39461902279;NANOG{mouse}:-1.57440301963;SPZ1:-1.91628952248 | ||
|xref= | |||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11895-125E5;search_select_hide=table117:FF:11895-125E5 | |||
}} | }} |
Latest revision as of 18:27, 4 June 2020
Name: | Hep-2 cells treated with Streptococci strain JRS4, biol_rep2 |
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Species: | Human (Homo sapiens) |
Library ID: | CNhs13498 |
Sample type: | cell lines |
Genomic View: | UCSC |
RefEX: | Specific genes |
CAGEd-oPOSSUM: | link |
ZENBU report : | link |
Additional information | ||||||||||||||||||||||||||||
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Sample information
RNA information
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CAGE Accession numbers | ||||||||||||||||||||||||||||||||||||||||||||||
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Download raw sequence, BAM & CTSS | ||||||||||||||
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs13498
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs13498
Novel motif | Logo | P-value |
---|---|---|
1 | 1 | 0.0301 |
10 | 10 | 0.0523 |
100 | 100 | 0.0159 |
101 | 101 | 0.203 |
102 | 102 | 0.968 |
103 | 103 | 0.839 |
104 | 104 | 0.743 |
105 | 105 | 0.258 |
106 | 106 | 0.0473 |
107 | 107 | 0.18 |
108 | 108 | 0.645 |
109 | 109 | 9.27522e-4 |
11 | 11 | 0.57 |
110 | 110 | 0.213 |
111 | 111 | 0.359 |
112 | 112 | 0.281 |
113 | 113 | 0.00525 |
114 | 114 | 0.465 |
115 | 115 | 0.999 |
116 | 116 | 0.186 |
117 | 117 | 0.149 |
118 | 118 | 0.0502 |
119 | 119 | 0.305 |
12 | 12 | 0.702 |
120 | 120 | 0.0849 |
121 | 121 | 0.499 |
122 | 122 | 0.108 |
123 | 123 | 0.315 |
124 | 124 | 0.833 |
125 | 125 | 0.646 |
126 | 126 | 0.749 |
127 | 127 | 0.123 |
128 | 128 | 7.53661e-4 |
129 | 129 | 0.468 |
13 | 13 | 1.14885e-4 |
130 | 130 | 0.554 |
131 | 131 | 0.408 |
132 | 132 | 0.877 |
133 | 133 | 0.0979 |
134 | 134 | 0.805 |
135 | 135 | 0.159 |
136 | 136 | 0.0115 |
137 | 137 | 0.167 |
138 | 138 | 0.462 |
139 | 139 | 0.0911 |
14 | 14 | 0.555 |
140 | 140 | 0.461 |
141 | 141 | 0.21 |
142 | 142 | 0.674 |
143 | 143 | 0.249 |
144 | 144 | 0.455 |
145 | 145 | 0.336 |
146 | 146 | 0.863 |
147 | 147 | 0.474 |
148 | 148 | 0.415 |
149 | 149 | 0.455 |
15 | 15 | 0.358 |
150 | 150 | 0.726 |
151 | 151 | 0.76 |
152 | 152 | 0.671 |
153 | 153 | 0.796 |
154 | 154 | 0.332 |
155 | 155 | 0.617 |
156 | 156 | 0.105 |
157 | 157 | 0.0842 |
158 | 158 | 0.184 |
159 | 159 | 0.139 |
16 | 16 | 0.53 |
160 | 160 | 0.243 |
161 | 161 | 0.383 |
162 | 162 | 0.356 |
163 | 163 | 0.196 |
164 | 164 | 0.00924 |
165 | 165 | 0.298 |
166 | 166 | 0.0362 |
167 | 167 | 0.196 |
168 | 168 | 0.182 |
169 | 169 | 0.132 |
17 | 17 | 0.862 |
18 | 18 | 0.259 |
19 | 19 | 0.98 |
2 | 2 | 0.555 |
20 | 20 | 0.15 |
21 | 21 | 0.194 |
22 | 22 | 0.902 |
23 | 23 | 0.0216 |
24 | 24 | 0.427 |
25 | 25 | 0.124 |
26 | 26 | 0.645 |
27 | 27 | 0.867 |
28 | 28 | 0.871 |
29 | 29 | 0.012 |
3 | 3 | 0.801 |
30 | 30 | 0.447 |
31 | 31 | 0.678 |
32 | 32 | 0.167 |
33 | 33 | 0.111 |
34 | 34 | 0.237 |
35 | 35 | 0.876 |
36 | 36 | 0.0534 |
37 | 37 | 0.261 |
38 | 38 | 0.518 |
39 | 39 | 0.991 |
4 | 4 | 0.149 |
40 | 40 | 0.00541 |
41 | 41 | 0.166 |
42 | 42 | 0.785 |
43 | 43 | 0.77 |
44 | 44 | 0.0462 |
45 | 45 | 0.277 |
46 | 46 | 0.748 |
47 | 47 | 0.142 |
48 | 48 | 0.244 |
49 | 49 | 0.385 |
5 | 5 | 0.497 |
50 | 50 | 0.842 |
51 | 51 | 0.722 |
52 | 52 | 0.306 |
53 | 53 | 0.171 |
54 | 54 | 0.6 |
55 | 55 | 0.0531 |
56 | 56 | 0.902 |
57 | 57 | 0.408 |
58 | 58 | 0.912 |
59 | 59 | 0.995 |
6 | 6 | 0.491 |
60 | 60 | 0.528 |
61 | 61 | 0.0685 |
62 | 62 | 0.559 |
63 | 63 | 0.34 |
64 | 64 | 0.574 |
65 | 65 | 0.611 |
66 | 66 | 0.614 |
67 | 67 | 0.898 |
68 | 68 | 0.596 |
69 | 69 | 0.875 |
7 | 7 | 0.0168 |
70 | 70 | 0.874 |
71 | 71 | 0.0137 |
72 | 72 | 0.991 |
73 | 73 | 0.332 |
74 | 74 | 0.175 |
75 | 75 | 0.115 |
76 | 76 | 0.124 |
77 | 77 | 0.337 |
78 | 78 | 0.0986 |
79 | 79 | 0.649 |
8 | 8 | 0.0578 |
80 | 80 | 0.0802 |
81 | 81 | 0.281 |
82 | 82 | 0.247 |
83 | 83 | 0.84 |
84 | 84 | 0.484 |
85 | 85 | 0.0574 |
86 | 86 | 0.961 |
87 | 87 | 0.0044 |
88 | 88 | 0.902 |
89 | 89 | 0.645 |
9 | 9 | 0.606 |
90 | 90 | 0.0618 |
91 | 91 | 0.0245 |
92 | 92 | 0.116 |
93 | 93 | 0.204 |
94 | 94 | 0.763 |
95 | 95 | 0.0234 |
96 | 96 | 0.442 |
97 | 97 | 0.928 |
98 | 98 | 0.465 |
99 | 99 | 0.309 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs13498
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
EFO:0002091 biological replicate
FF:0011134 human Hep-2 cells treated with Streptococci strain JRS4 sample
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000066 (epithelial cell)
0000255 (eukaryotic cell)
DOID: Disease
4 (disease)
162 (cancer)
14566 (disease of cellular proliferation)
0050687 (cell type cancer)
305 (carcinoma)
UBERON: Anatomy
0000468 (multi-cellular organism)
0001737 (larynx)
0000064 (organ part)
0004119 (endoderm-derived structure)
0000062 (organ)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000063 (organ segment)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0000072 (segment of respiratory tract)
0010317 (germ layer / neural crest derived structure)
0000065 (respiratory tract)
0001004 (respiratory system)
0001557 (upper respiratory tract)
FF: FANTOM5
0000102 (sample by type)
0000003 (cell line sample)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0000625 (experimental infection sample)
0000350 (experimentally modified sample)
0000632 (group A streptococci treatment sample)
0104978 (HEp-2 cell sample)
0000639 (Streptococcus strain JRS4 treatment sample)
0100297 (carcinoma cell line sample)
0101120 (epithelial cell line sample)
0011134 (human Hep-2 cells treated with Streptococci strain JRS4 sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
UBERON:0008947 (respiratory primordium)
UBERON:0002532 (epiblast (generic))
UBERON:0006595 (presumptive endoderm)
UBERON:0010316 (germ layer / neural crest)