FF:11903-125F4: Difference between revisions
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{{f5samples | {{f5samples | ||
|ancestors_in_anatomy_facet= | |DRA_sample_Accession=CAGE@SAMD00004873 | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL: | |accession_numbers=CAGE;DRX008570;DRR009442;DRZ000867;DRZ002252;DRZ012217;DRZ013602 | ||
|ancestors_in_anatomy_facet= | |||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000988,CL:0000548,CL:0002371,CL:0000219,CL:0000738,CL:0000990,CL:0000255,CL:0000451,CL:0000453 | |||
|ancestors_in_disease_facet= | |ancestors_in_disease_facet= | ||
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000001,FF:0011136 | |||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|data_phase=2 | |||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score= | |||
|fonse_cell_line= | |fonse_cell_line= | ||
|fonse_cell_line_closure= | |fonse_cell_line_closure= | ||
| Line 35: | Line 42: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/migratory%2520langerhans%2520cells%252c%2520donor3.CNhs13547.11903-125F4.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/migratory%2520langerhans%2520cells%252c%2520donor3.CNhs13547.11903-125F4.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/migratory%2520langerhans%2520cells%252c%2520donor3.CNhs13547.11903-125F4.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/migratory%2520langerhans%2520cells%252c%2520donor3.CNhs13547.11903-125F4.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/migratory%2520langerhans%2520cells%252c%2520donor3.CNhs13547.11903-125F4.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:11903-125F4 | |id=FF:11903-125F4 | ||
|is_a=EFO:0002091;;FF: | |is_a=EFO:0002091;;FF:0011136 | ||
|is_obsolete= | |||
|library_id=CNhs13547 | |||
|library_id_phase_based=2:CNhs13547 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11903 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11903 | |||
|name=migratory langerhans cells, donor3 | |name=migratory langerhans cells, donor3 | ||
|namespace= | |namespace= | ||
| Line 44: | Line 63: | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq= | |profile_srnaseq= | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
|repeat_enrich_byfamily=0,0,0.109302091325272,0,0,0.0657907963604995,0,0.0130711092803861,0.0657907963604995,-0.16435458767607,-0.220946698266812,0,0,0,0,0,0,0,0,0.0657907963604995,0.173389139366772,0.218604182650544,0,0,-0.153323010348428,0,0,0,0,0,-0.032167099907558,0,0,-0.132956589778862,0,0,0,0,0,0,0,0,0,0,0,0,-0.121957399857489,0,0,0,0,0,0,0,0,-0.0242150211128343,0,0,0,0.363334234799791,0,-0.0850640652071297,0,-0.0312015648821056,0,0,0.162208915592067,0,0,0,0,0,0,0,0,0,0,0.538257060157457,0,0,0.218604182650544,0,0,0,0,0.0328953981802498,0,0,0,0,0,-0.288364579825,0,0,0,-0.050394659450945,0.0473949703139959,0.109302091325272,0,0.165709372066816,0,0.0248783733825538,-0.105581802620645,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.033402677480121,0,0,0,-0.0883971725108981,-0.05581350573582,0,0,0,0,0,0 | |||
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| |||
|rna_box=125 | |rna_box=125 | ||
|rna_catalog_number= | |rna_catalog_number= | ||
| Line 57: | Line 79: | ||
|rna_weight_ug=1.1376 | |rna_weight_ug=1.1376 | ||
|sample_age= | |sample_age= | ||
|sample_category=primary cells | |||
|sample_cell_catalog= | |sample_cell_catalog= | ||
|sample_cell_line= | |sample_cell_line= | ||
| Line 69: | Line 92: | ||
|sample_ethnicity= | |sample_ethnicity= | ||
|sample_experimental_condition= | |sample_experimental_condition= | ||
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;3.78196403156067e-247!GO:0043227;membrane-bound organelle;4.89231462859659e-203!GO:0043231;intracellular membrane-bound organelle;1.07042663392571e-202!GO:0043226;organelle;1.52249762651566e-199!GO:0043229;intracellular organelle;6.84087249387403e-199!GO:0005737;cytoplasm;2.72618640950604e-164!GO:0044422;organelle part;4.87179330254724e-122!GO:0044446;intracellular organelle part;1.71465979598429e-120!GO:0044444;cytoplasmic part;4.90243928542924e-111!GO:0043170;macromolecule metabolic process;3.1447886983003e-99!GO:0044238;primary metabolic process;1.67757962391504e-98!GO:0044237;cellular metabolic process;1.3474437145944e-97!GO:0032991;macromolecular complex;4.77558854191208e-96!GO:0005634;nucleus;5.44628726052564e-93!GO:0030529;ribonucleoprotein complex;7.85236236296303e-79!GO:0044428;nuclear part;1.29777568807399e-71!GO:0043233;organelle lumen;3.89913920041236e-69!GO:0031974;membrane-enclosed lumen;3.89913920041236e-69!GO:0003723;RNA binding;1.58997292574545e-67!GO:0043283;biopolymer metabolic process;6.10826061766053e-64!GO:0005515;protein binding;2.65741835714115e-61!GO:0010467;gene expression;1.04612730730669e-58!GO:0005739;mitochondrion;3.56906885639191e-58!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;3.92084461177102e-54!GO:0033036;macromolecule localization;3.27419939234993e-52!GO:0015031;protein transport;1.48052095512867e-51!GO:0006396;RNA processing;1.02260489474201e-50!GO:0045184;establishment of protein localization;4.1213711889144e-49!GO:0043234;protein complex;4.1213711889144e-49!GO:0019538;protein metabolic process;1.27078997528864e-48!GO:0008104;protein localization;7.95527691109678e-48!GO:0006412;translation;8.73697332045504e-48!GO:0016071;mRNA metabolic process;7.05758701761603e-45!GO:0031981;nuclear lumen;4.93186583302185e-44!GO:0031090;organelle membrane;8.85039367627554e-44!GO:0044429;mitochondrial part;2.49830878741155e-43!GO:0044267;cellular protein metabolic process;2.67257751466726e-43!GO:0005840;ribosome;6.07279479484885e-43!GO:0044260;cellular macromolecule metabolic process;6.48302206904294e-43!GO:0008380;RNA splicing;3.30747806102906e-40!GO:0005829;cytosol;8.04263836848216e-39!GO:0006397;mRNA processing;9.69296759129661e-39!GO:0031967;organelle envelope;3.24504125623938e-38!GO:0031975;envelope;5.27562788706927e-38!GO:0046907;intracellular transport;1.40720896540989e-37!GO:0003735;structural constituent of ribosome;3.49458567085948e-37!GO:0016043;cellular component organization and biogenesis;5.21312650545617e-37!GO:0003676;nucleic acid binding;1.59712957513432e-36!GO:0009059;macromolecule biosynthetic process;3.13141569749263e-36!GO:0006886;intracellular protein transport;4.63616213287167e-34!GO:0009058;biosynthetic process;2.30081543275961e-33!GO:0044249;cellular biosynthetic process;3.64967854498324e-33!GO:0016070;RNA metabolic process;1.04374304477473e-32!GO:0033279;ribosomal subunit;2.01916117801842e-32!GO:0065003;macromolecular complex assembly;2.9097112897127e-30!GO:0005654;nucleoplasm;8.10940931415889e-29!GO:0005681;spliceosome;8.7609972747416e-29!GO:0022613;ribonucleoprotein complex biogenesis and assembly;2.30940118369726e-28!GO:0005740;mitochondrial envelope;3.35122735353131e-27!GO:0006996;organelle organization and biogenesis;5.12994158520501e-26!GO:0022607;cellular component assembly;7.07007960694492e-26!GO:0051649;establishment of cellular localization;1.17352369443657e-25!GO:0031966;mitochondrial membrane;1.23081649869561e-25!GO:0019866;organelle inner membrane;4.28374067978687e-25!GO:0051641;cellular localization;5.3086923121486e-25!GO:0006259;DNA metabolic process;1.13589756002905e-24!GO:0005830;cytosolic ribosome (sensu Eukaryota);2.09349435871869e-24!GO:0044445;cytosolic part;8.42663358667663e-24!GO:0000166;nucleotide binding;3.97609800283856e-23!GO:0044451;nucleoplasm part;5.48774647397202e-23!GO:0005743;mitochondrial inner membrane;6.94870909924571e-23!GO:0016462;pyrophosphatase activity;3.53731232009079e-22!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;4.6369854389844e-22!GO:0016817;hydrolase activity, acting on acid anhydrides;5.04764072316069e-22!GO:0006512;ubiquitin cycle;6.64737161214498e-22!GO:0043228;non-membrane-bound organelle;9.45386185019834e-22!GO:0043232;intracellular non-membrane-bound organelle;9.45386185019834e-22!GO:0017111;nucleoside-triphosphatase activity;1.96790722514137e-21!GO:0048770;pigment granule;3.02388394425092e-21!GO:0042470;melanosome;3.02388394425092e-21!GO:0006119;oxidative phosphorylation;3.82249999298601e-21!GO:0044265;cellular macromolecule catabolic process;4.19466785702768e-21!GO:0008134;transcription factor binding;5.48819942447431e-20!GO:0012501;programmed cell death;6.56858805349083e-20!GO:0006915;apoptosis;7.98509783349611e-20!GO:0016874;ligase activity;1.07234367977275e-19!GO:0043285;biopolymer catabolic process;2.83876729878369e-19!GO:0051603;proteolysis involved in cellular protein catabolic process;3.63184801996772e-19!GO:0031980;mitochondrial lumen;4.28001115513472e-19!GO:0005759;mitochondrial matrix;4.28001115513472e-19!GO:0006511;ubiquitin-dependent protein catabolic process;4.85180414278189e-19!GO:0019941;modification-dependent protein catabolic process;5.32081576370999e-19!GO:0043632;modification-dependent macromolecule catabolic process;5.32081576370999e-19!GO:0022618;protein-RNA complex assembly;6.14417778919887e-19!GO:0008219;cell death;7.47559167891759e-19!GO:0016265;death;7.47559167891759e-19!GO:0009057;macromolecule catabolic process;1.0534681350607e-18!GO:0044257;cellular protein catabolic process;1.34546665926727e-18!GO:0044455;mitochondrial membrane part;6.08099412548464e-18!GO:0006457;protein folding;6.08099412548464e-18!GO:0032553;ribonucleotide binding;2.93933682904367e-17!GO:0032555;purine ribonucleotide binding;2.93933682904367e-17!GO:0044248;cellular catabolic process;3.82065355706993e-17!GO:0015934;large ribosomal subunit;6.87760245286494e-17!GO:0017076;purine nucleotide binding;1.61395189338241e-16!GO:0000502;proteasome complex (sensu Eukaryota);1.6951522886261e-16!GO:0005730;nucleolus;1.70490534230703e-16!GO:0016604;nuclear body;2.27999289232723e-16!GO:0030163;protein catabolic process;2.43701802470758e-16!GO:0012505;endomembrane system;2.95362725396188e-16!GO:0015935;small ribosomal subunit;3.41767362313964e-16!GO:0043412;biopolymer modification;7.74293280994843e-16!GO:0006974;response to DNA damage stimulus;1.37066159969233e-15!GO:0006605;protein targeting;2.09555492537421e-15!GO:0050794;regulation of cellular process;3.20288303876277e-15!GO:0008135;translation factor activity, nucleic acid binding;6.42324121954801e-15!GO:0005746;mitochondrial respiratory chain;7.18447199607653e-15!GO:0000398;nuclear mRNA splicing, via spliceosome;2.06917267235621e-14!GO:0000375;RNA splicing, via transesterification reactions;2.06917267235621e-14!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;2.06917267235621e-14!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;3.09120568311753e-14!GO:0051186;cofactor metabolic process;3.79149413719878e-14!GO:0048193;Golgi vesicle transport;5.97979005985873e-14!GO:0016607;nuclear speck;6.51518008015057e-14!GO:0006464;protein modification process;8.64753149922237e-14!GO:0005794;Golgi apparatus;8.76960968979307e-14!GO:0005524;ATP binding;8.78693440887375e-14!GO:0032559;adenyl ribonucleotide binding;1.33731382904884e-13!GO:0016887;ATPase activity;1.93792519439802e-13!GO:0003712;transcription cofactor activity;1.93896187956969e-13!GO:0050136;NADH dehydrogenase (quinone) activity;2.45053453549482e-13!GO:0003954;NADH dehydrogenase activity;2.45053453549482e-13!GO:0008137;NADH dehydrogenase (ubiquinone) activity;2.45053453549482e-13!GO:0006281;DNA repair;3.08853856476823e-13!GO:0042623;ATPase activity, coupled;3.41973209843646e-13!GO:0043687;post-translational protein modification;5.90769356360206e-13!GO:0030554;adenyl nucleotide binding;8.07244404932689e-13!GO:0008565;protein transporter activity;1.01077920321942e-12!GO:0042981;regulation of apoptosis;1.07156653900383e-12!GO:0043067;regulation of programmed cell death;1.40969733949926e-12!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);1.57225659912507e-12!GO:0006913;nucleocytoplasmic transport;1.93052474876627e-12!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);2.70463736414163e-12!GO:0051082;unfolded protein binding;3.0463890386568e-12!GO:0051169;nuclear transport;3.55452830175498e-12!GO:0042775;organelle ATP synthesis coupled electron transport;4.35332564818305e-12!GO:0042773;ATP synthesis coupled electron transport;4.35332564818305e-12!GO:0005761;mitochondrial ribosome;5.38677249332642e-12!GO:0000313;organellar ribosome;5.38677249332642e-12!GO:0005635;nuclear envelope;5.65984178185316e-12!GO:0019787;small conjugating protein ligase activity;7.9548773349906e-12!GO:0030964;NADH dehydrogenase complex (quinone);8.38715276954424e-12!GO:0045271;respiratory chain complex I;8.38715276954424e-12!GO:0005747;mitochondrial respiratory chain complex I;8.38715276954424e-12!GO:0003743;translation initiation factor activity;1.00792002647339e-11!GO:0008639;small protein conjugating enzyme activity;1.01115084419089e-11!GO:0006732;coenzyme metabolic process;1.30737578578587e-11!GO:0006413;translational initiation;1.5193261970891e-11!GO:0019222;regulation of metabolic process;1.61116177189254e-11!GO:0004842;ubiquitin-protein ligase activity;1.75792254142639e-11!GO:0016192;vesicle-mediated transport;2.25340238419079e-11!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;2.42814654692476e-11!GO:0004386;helicase activity;3.42593006822056e-11!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;3.88997188785681e-11!GO:0044453;nuclear membrane part;4.53163014743149e-11!GO:0007049;cell cycle;4.75907036602143e-11!GO:0050657;nucleic acid transport;5.22365866721932e-11!GO:0051236;establishment of RNA localization;5.22365866721932e-11!GO:0050658;RNA transport;5.22365866721932e-11!GO:0009056;catabolic process;5.40378477429694e-11!GO:0006325;establishment and/or maintenance of chromatin architecture;5.68355214779148e-11!GO:0006403;RNA localization;8.04691685335538e-11!GO:0051276;chromosome organization and biogenesis;9.07039028015625e-11!GO:0005773;vacuole;1.03853418512514e-10!GO:0006446;regulation of translational initiation;1.23267052372016e-10!GO:0009719;response to endogenous stimulus;1.50446144662556e-10!GO:0031965;nuclear membrane;1.71239788739116e-10!GO:0008026;ATP-dependent helicase activity;1.85234317654495e-10!GO:0006323;DNA packaging;2.34571440088308e-10!GO:0042254;ribosome biogenesis and assembly;2.40680302494648e-10!GO:0016881;acid-amino acid ligase activity;3.6715537294803e-10!GO:0016879;ligase activity, forming carbon-nitrogen bonds;4.33671976705518e-10!GO:0000323;lytic vacuole;4.70227202623086e-10!GO:0005764;lysosome;4.70227202623086e-10!GO:0005643;nuclear pore;5.30891687226386e-10!GO:0050789;regulation of biological process;6.70981323376353e-10!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;1.27069906406217e-09!GO:0043069;negative regulation of programmed cell death;1.58676436210231e-09!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;1.61923202915694e-09!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;2.0985510173648e-09!GO:0043066;negative regulation of apoptosis;2.50760307355194e-09!GO:0051028;mRNA transport;2.8104018578274e-09!GO:0031323;regulation of cellular metabolic process;2.96373353703953e-09!GO:0009259;ribonucleotide metabolic process;3.31343754062627e-09!GO:0065002;intracellular protein transport across a membrane;3.59000396138993e-09!GO:0006461;protein complex assembly;3.94812821103087e-09!GO:0007249;I-kappaB kinase/NF-kappaB cascade;4.15298035374793e-09!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;4.661734073196e-09!GO:0005783;endoplasmic reticulum;4.7533156660445e-09!GO:0006399;tRNA metabolic process;4.92187113713613e-09!GO:0006366;transcription from RNA polymerase II promoter;5.35979888188876e-09!GO:0005768;endosome;7.05358804112991e-09!GO:0006350;transcription;1.01166998842515e-08!GO:0006163;purine nucleotide metabolic process;1.04663970446288e-08!GO:0016787;hydrolase activity;1.11373029385009e-08!GO:0016568;chromatin modification;1.31979411666276e-08!GO:0009055;electron carrier activity;1.32658275683061e-08!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;1.36304934144348e-08!GO:0009150;purine ribonucleotide metabolic process;1.48383089449978e-08!GO:0009260;ribonucleotide biosynthetic process;1.91100902231562e-08!GO:0006164;purine nucleotide biosynthetic process;1.96607709666001e-08!GO:0006888;ER to Golgi vesicle-mediated transport;2.05940626932359e-08!GO:0015986;ATP synthesis coupled proton transport;2.08364996131397e-08!GO:0015985;energy coupled proton transport, down electrochemical gradient;2.08364996131397e-08!GO:0017038;protein import;2.37990670082043e-08!GO:0009152;purine ribonucleotide biosynthetic process;2.63788057518054e-08!GO:0044432;endoplasmic reticulum part;3.22984862268146e-08!GO:0003713;transcription coactivator activity;3.41283735171198e-08!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;3.4597213711179e-08!GO:0051188;cofactor biosynthetic process;3.73651294779476e-08!GO:0006916;anti-apoptosis;4.07701256987908e-08!GO:0010468;regulation of gene expression;4.90651081114735e-08!GO:0005694;chromosome;5.05595894802953e-08!GO:0046930;pore complex;5.20741427413557e-08!GO:0009142;nucleoside triphosphate biosynthetic process;6.18238168484533e-08!GO:0009201;ribonucleoside triphosphate biosynthetic process;6.18238168484533e-08!GO:0030532;small nuclear ribonucleoprotein complex;6.44166526133407e-08!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;6.80632514527279e-08!GO:0009145;purine nucleoside triphosphate biosynthetic process;6.80632514527279e-08!GO:0019829;cation-transporting ATPase activity;7.42975045418451e-08!GO:0048475;coated membrane;8.50866571781727e-08!GO:0030117;membrane coat;8.50866571781727e-08!GO:0030120;vesicle coat;8.50866571781727e-08!GO:0030662;coated vesicle membrane;8.50866571781727e-08!GO:0051246;regulation of protein metabolic process;8.91866064617286e-08!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;1.01378772944697e-07!GO:0004812;aminoacyl-tRNA ligase activity;1.01378772944697e-07!GO:0016875;ligase activity, forming carbon-oxygen bonds;1.01378772944697e-07!GO:0009199;ribonucleoside triphosphate metabolic process;1.11687089183085e-07!GO:0005839;proteasome core complex (sensu Eukaryota);1.1775561143508e-07!GO:0015078;hydrogen ion transmembrane transporter activity;1.20595872821106e-07!GO:0009205;purine ribonucleoside triphosphate metabolic process;1.2562003472024e-07!GO:0009144;purine nucleoside triphosphate metabolic process;1.2562003472024e-07!GO:0043038;amino acid activation;1.3118663417739e-07!GO:0006418;tRNA aminoacylation for protein translation;1.3118663417739e-07!GO:0043039;tRNA aminoacylation;1.3118663417739e-07!GO:0003924;GTPase activity;1.87885092451571e-07!GO:0019219;regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;1.9106624386737e-07!GO:0022402;cell cycle process;2.18609347583415e-07!GO:0009141;nucleoside triphosphate metabolic process;2.92794956795165e-07!GO:0008270;zinc ion binding;3.04036551989955e-07!GO:0006754;ATP biosynthetic process;3.04036551989955e-07!GO:0006753;nucleoside phosphate metabolic process;3.04036551989955e-07!GO:0006793;phosphorus metabolic process;3.09874333346391e-07!GO:0006796;phosphate metabolic process;3.09874333346391e-07!GO:0007243;protein kinase cascade;3.60575910426889e-07!GO:0043566;structure-specific DNA binding;3.89433598516509e-07!GO:0000245;spliceosome assembly;4.25309971480897e-07!GO:0005770;late endosome;4.29405655656695e-07!GO:0007005;mitochondrion organization and biogenesis;4.57895756824709e-07!GO:0009060;aerobic respiration;4.64506716097872e-07!GO:0004298;threonine endopeptidase activity;4.82467290170593e-07!GO:0006364;rRNA processing;5.03971755577192e-07!GO:0051168;nuclear export;5.101553287109e-07!GO:0006333;chromatin assembly or disassembly;5.28894514825732e-07!GO:0032774;RNA biosynthetic process;5.48213585495441e-07!GO:0006351;transcription, DNA-dependent;6.48407270639527e-07!GO:0007264;small GTPase mediated signal transduction;7.69015681913122e-07!GO:0046034;ATP metabolic process;7.76514299563916e-07!GO:0048523;negative regulation of cellular process;7.87410877317843e-07!GO:0045333;cellular respiration;8.88762710910739e-07!GO:0016072;rRNA metabolic process;1.03117197372369e-06!GO:0009108;coenzyme biosynthetic process;1.04274372839903e-06!GO:0065004;protein-DNA complex assembly;1.08288001615019e-06!GO:0016469;proton-transporting two-sector ATPase complex;1.18791290739381e-06!GO:0031202;RNA splicing factor activity, transesterification mechanism;1.30632822799361e-06!GO:0003697;single-stranded DNA binding;1.41361219178981e-06!GO:0005798;Golgi-associated vesicle;1.46168372227529e-06!GO:0044431;Golgi apparatus part;1.65208136345125e-06!GO:0044427;chromosomal part;1.68194158706705e-06!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;1.76513144065943e-06!GO:0006260;DNA replication;1.97250162575324e-06!GO:0006752;group transfer coenzyme metabolic process;2.1046901846153e-06!GO:0051427;hormone receptor binding;2.1706163239668e-06!GO:0032446;protein modification by small protein conjugation;2.1706163239668e-06!GO:0016563;transcription activator activity;2.61908579947466e-06!GO:0051726;regulation of cell cycle;3.15769295593568e-06!GO:0031988;membrane-bound vesicle;3.44543398476939e-06!GO:0016564;transcription repressor activity;3.49915785655506e-06!GO:0000074;regulation of progression through cell cycle;3.52641968209289e-06!GO:0051170;nuclear import;3.59256428713283e-06!GO:0044440;endosomal part;3.59256428713283e-06!GO:0010008;endosome membrane;3.59256428713283e-06!GO:0003724;RNA helicase activity;3.76467747534175e-06!GO:0000785;chromatin;3.77873743906792e-06!GO:0042613;MHC class II protein complex;3.95939264884827e-06!GO:0000151;ubiquitin ligase complex;4.29313563978146e-06!GO:0035257;nuclear hormone receptor binding;4.78371717032306e-06!GO:0005525;GTP binding;4.97169193044956e-06!GO:0045449;regulation of transcription;4.97169193044956e-06!GO:0016567;protein ubiquitination;5.00526484740669e-06!GO:0002504;antigen processing and presentation of peptide or polysaccharide antigen via MHC class II;5.49372689487486e-06!GO:0005793;ER-Golgi intermediate compartment;5.71777569535173e-06!GO:0065007;biological regulation;6.25080274830992e-06!GO:0006099;tricarboxylic acid cycle;6.77695068857875e-06!GO:0046356;acetyl-CoA catabolic process;6.77695068857875e-06!GO:0016310;phosphorylation;7.9943374097729e-06!GO:0045259;proton-transporting ATP synthase complex;8.14568780211885e-06!GO:0003714;transcription corepressor activity;8.58069254483267e-06!GO:0006606;protein import into nucleus;9.09765907543395e-06!GO:0016023;cytoplasmic membrane-bound vesicle;9.83442003696539e-06!GO:0051187;cofactor catabolic process;9.96595170606601e-06!GO:0031982;vesicle;1.02217160315735e-05!GO:0048471;perinuclear region of cytoplasm;1.05228910661859e-05!GO:0006613;cotranslational protein targeting to membrane;1.06883151735181e-05!GO:0042175;nuclear envelope-endoplasmic reticulum network;1.14803538269181e-05!GO:0005789;endoplasmic reticulum membrane;1.26137373496918e-05!GO:0006084;acetyl-CoA metabolic process;1.29729796753046e-05!GO:0009117;nucleotide metabolic process;1.39994142211273e-05!GO:0015077;monovalent inorganic cation transmembrane transporter activity;1.40988170056999e-05!GO:0048519;negative regulation of biological process;1.55874542695974e-05!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;2.16403499646269e-05!GO:0015399;primary active transmembrane transporter activity;2.16403499646269e-05!GO:0006355;regulation of transcription, DNA-dependent;2.90983542328211e-05!GO:0005774;vacuolar membrane;2.917874721571e-05!GO:0046914;transition metal ion binding;3.15978468715204e-05!GO:0016779;nucleotidyltransferase activity;3.34165890443553e-05!GO:0009109;coenzyme catabolic process;3.42129852215738e-05!GO:0031324;negative regulation of cellular metabolic process;3.60898755013987e-05!GO:0031410;cytoplasmic vesicle;3.61351119452839e-05!GO:0031252;leading edge;4.5163849431251e-05!GO:0005852;eukaryotic translation initiation factor 3 complex;4.55346860914385e-05!GO:0007242;intracellular signaling cascade;4.75653686127892e-05!GO:0032561;guanyl ribonucleotide binding;4.86452626008705e-05!GO:0019001;guanyl nucleotide binding;4.86452626008705e-05!GO:0019899;enzyme binding;5.73803594776064e-05!GO:0045786;negative regulation of progression through cell cycle;6.75520577114525e-05!GO:0006402;mRNA catabolic process;7.06846915159906e-05!GO:0008234;cysteine-type peptidase activity;7.16466528090883e-05!GO:0005813;centrosome;7.4362489366562e-05!GO:0008186;RNA-dependent ATPase activity;9.3773905866528e-05!GO:0006612;protein targeting to membrane;9.61551204452631e-05!GO:0005765;lysosomal membrane;9.76602526529603e-05!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.000104562275530291!GO:0016740;transferase activity;0.000121635638976006!GO:0044437;vacuolar part;0.00012285581831026!GO:0003729;mRNA binding;0.000138736968628918!GO:0043021;ribonucleoprotein binding;0.000144599656611082!GO:0016772;transferase activity, transferring phosphorus-containing groups;0.000157093611929358!GO:0005885;Arp2/3 protein complex;0.000162391204197689!GO:0007265;Ras protein signal transduction;0.000165066582275861!GO:0003677;DNA binding;0.000165066582275861!GO:0009892;negative regulation of metabolic process;0.000189719839807791!GO:0006401;RNA catabolic process;0.000189876321722491!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;0.000202861474590955!GO:0031072;heat shock protein binding;0.000217345320855103!GO:0005815;microtubule organizing center;0.000218941584059022!GO:0005762;mitochondrial large ribosomal subunit;0.000236301271387701!GO:0000315;organellar large ribosomal subunit;0.000236301271387701!GO:0048522;positive regulation of cellular process;0.000243336206703689!GO:0000139;Golgi membrane;0.000257069840910397!GO:0000278;mitotic cell cycle;0.000276892251399665!GO:0006891;intra-Golgi vesicle-mediated transport;0.00028315132486367!GO:0004004;ATP-dependent RNA helicase activity;0.000289322335367123!GO:0030521;androgen receptor signaling pathway;0.000296846742702194!GO:0048468;cell development;0.00030975302560301!GO:0016481;negative regulation of transcription;0.000323287573973622!GO:0009165;nucleotide biosynthetic process;0.000334433206757635!GO:0043623;cellular protein complex assembly;0.000370198247596831!GO:0065009;regulation of a molecular function;0.000385069195398057!GO:0015630;microtubule cytoskeleton;0.000392739718366085!GO:0006417;regulation of translation;0.000403026699757645!GO:0016197;endosome transport;0.000405956064383269!GO:0043492;ATPase activity, coupled to movement of substances;0.00041018558285759!GO:0009967;positive regulation of signal transduction;0.000421704973430371!GO:0003899;DNA-directed RNA polymerase activity;0.00045093775719575!GO:0032395;MHC class II receptor activity;0.000483513468948822!GO:0008654;phospholipid biosynthetic process;0.000491845264105305!GO:0043065;positive regulation of apoptosis;0.00050087025779845!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.000506107592881831!GO:0030658;transport vesicle membrane;0.000538772876874561!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.000542886738956924!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.000558702818340418!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.000577788119115076!GO:0006334;nucleosome assembly;0.00058183964408302!GO:0016363;nuclear matrix;0.000582152432940931!GO:0043068;positive regulation of programmed cell death;0.00066600646234401!GO:0005083;small GTPase regulator activity;0.000681087167420375!GO:0003690;double-stranded DNA binding;0.000682074953617857!GO:0005048;signal sequence binding;0.000682471629046927!GO:0000209;protein polyubiquitination;0.000682471629046927!GO:0051789;response to protein stimulus;0.000682471629046927!GO:0006986;response to unfolded protein;0.000682471629046927!GO:0046966;thyroid hormone receptor binding;0.000701660658050079!GO:0031902;late endosome membrane;0.000701755768213659!GO:0006357;regulation of transcription from RNA polymerase II promoter;0.000737291816829585!GO:0035258;steroid hormone receptor binding;0.000777772558523593!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.000787227617125905!GO:0005741;mitochondrial outer membrane;0.000889984732894383!GO:0031497;chromatin assembly;0.000890011331498975!GO:0006302;double-strand break repair;0.000929470631985024!GO:0006917;induction of apoptosis;0.000940055381334337!GO:0006261;DNA-dependent DNA replication;0.000940893916627053!GO:0016251;general RNA polymerase II transcription factor activity;0.000942241591001244!GO:0006818;hydrogen transport;0.00094950358255663!GO:0006611;protein export from nucleus;0.00101433078130389!GO:0015992;proton transport;0.00113865230560866!GO:0001726;ruffle;0.00115200870379814!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.00115200870379814!GO:0005788;endoplasmic reticulum lumen;0.0012880713311479!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;0.00131674139864622!GO:0012502;induction of programmed cell death;0.0013425708035726!GO:0030663;COPI coated vesicle membrane;0.00138083016769452!GO:0030126;COPI vesicle coat;0.00138083016769452!GO:0006091;generation of precursor metabolites and energy;0.00138408432940795!GO:0006310;DNA recombination;0.00142976903703311!GO:0016859;cis-trans isomerase activity;0.00146324224816039!GO:0008637;apoptotic mitochondrial changes;0.00146324224816039!GO:0043087;regulation of GTPase activity;0.00155105876209769!GO:0045454;cell redox homeostasis;0.0015523447208024!GO:0004674;protein serine/threonine kinase activity;0.00166024726015977!GO:0015980;energy derivation by oxidation of organic compounds;0.00167297524681628!GO:0030118;clathrin coat;0.00167402780724701!GO:0030659;cytoplasmic vesicle membrane;0.0017152739609947!GO:0006352;transcription initiation;0.00174141962221916!GO:0012506;vesicle membrane;0.00179166684157434!GO:0006289;nucleotide-excision repair;0.00179881566757993!GO:0030137;COPI-coated vesicle;0.00181805565353972!GO:0005667;transcription factor complex;0.00183436299531433!GO:0030660;Golgi-associated vesicle membrane;0.00183436299531433!GO:0030384;phosphoinositide metabolic process;0.00183436299531433!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00190975865529506!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00190975865529506!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00190975865529506!GO:0000314;organellar small ribosomal subunit;0.00195415695055378!GO:0005763;mitochondrial small ribosomal subunit;0.00195415695055378!GO:0030518;steroid hormone receptor signaling pathway;0.00199037589789967!GO:0051252;regulation of RNA metabolic process;0.00204511417370462!GO:0051052;regulation of DNA metabolic process;0.00207888457767559!GO:0003678;DNA helicase activity;0.00209123595529961!GO:0006383;transcription from RNA polymerase III promoter;0.00211694641231834!GO:0006405;RNA export from nucleus;0.00213341438242019!GO:0043681;protein import into mitochondrion;0.00215147641328706!GO:0042802;identical protein binding;0.00216127491807389!GO:0046489;phosphoinositide biosynthetic process;0.00222088791897441!GO:0031968;organelle outer membrane;0.0022679087373804!GO:0006626;protein targeting to mitochondrion;0.00227230023073372!GO:0048500;signal recognition particle;0.00227581393803996!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.0022808745932966!GO:0005769;early endosome;0.00232210631842651!GO:0006650;glycerophospholipid metabolic process;0.00234331668803877!GO:0007034;vacuolar transport;0.00239882451318914!GO:0015631;tubulin binding;0.00244051854805767!GO:0005099;Ras GTPase activator activity;0.00251295874131528!GO:0031326;regulation of cellular biosynthetic process;0.00253758114857696!GO:0051087;chaperone binding;0.00260478332698641!GO:0022403;cell cycle phase;0.00270611397552911!GO:0016853;isomerase activity;0.00280211889020269!GO:0003682;chromatin binding;0.00282541266545436!GO:0046483;heterocycle metabolic process;0.00283530765285473!GO:0005637;nuclear inner membrane;0.00284673710203834!GO:0016491;oxidoreductase activity;0.00285857543506267!GO:0045045;secretory pathway;0.00297099777670911!GO:0006414;translational elongation;0.00315998006237845!GO:0016272;prefoldin complex;0.00322570333895434!GO:0019867;outer membrane;0.0033532409364296!GO:0045892;negative regulation of transcription, DNA-dependent;0.00335983236089718!GO:0030134;ER to Golgi transport vesicle;0.00362845023812765!GO:0030880;RNA polymerase complex;0.00363828673469638!GO:0003711;transcription elongation regulator activity;0.0037670115627946!GO:0022406;membrane docking;0.0038576731509201!GO:0048278;vesicle docking;0.0038576731509201!GO:0000059;protein import into nucleus, docking;0.00394280661922781!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.00395611115408235!GO:0045047;protein targeting to ER;0.00395611115408235!GO:0030133;transport vesicle;0.00395760751649974!GO:0005684;U2-dependent spliceosome;0.00410675392255843!GO:0008033;tRNA processing;0.00416987868563508!GO:0008139;nuclear localization sequence binding;0.00421425368287206!GO:0030127;COPII vesicle coat;0.00432925977023675!GO:0012507;ER to Golgi transport vesicle membrane;0.00432925977023675!GO:0008320;protein transmembrane transporter activity;0.00448273520537195!GO:0008632;apoptotic program;0.00473263456654561!GO:0005665;DNA-directed RNA polymerase II, core complex;0.00477240119537219!GO:0007006;mitochondrial membrane organization and biogenesis;0.00478393028369812!GO:0044433;cytoplasmic vesicle part;0.00479938579530016!GO:0019783;small conjugating protein-specific protease activity;0.00529855245806523!GO:0006839;mitochondrial transport;0.00537282127442798!GO:0004843;ubiquitin-specific protease activity;0.00557655557188845!GO:0050681;androgen receptor binding;0.00565819306396138!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.00574360728445847!GO:0008312;7S RNA binding;0.00587853602908473!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.00602120016534551!GO:0006338;chromatin remodeling;0.00605446075201542!GO:0006904;vesicle docking during exocytosis;0.00608659652445768!GO:0051920;peroxiredoxin activity;0.00620767877399219!GO:0030119;AP-type membrane coat adaptor complex;0.00625248085539074!GO:0007021;tubulin folding;0.00627177167612933!GO:0030867;rough endoplasmic reticulum membrane;0.00646013467430762!GO:0030695;GTPase regulator activity;0.00656277594375713!GO:0007050;cell cycle arrest;0.00664757956894278!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.00680997592436825!GO:0000428;DNA-directed RNA polymerase complex;0.00680997592436825!GO:0046474;glycerophospholipid biosynthetic process;0.00705997455091732!GO:0044262;cellular carbohydrate metabolic process;0.00743114144361768!GO:0008287;protein serine/threonine phosphatase complex;0.00747532389784147!GO:0005777;peroxisome;0.00783836270059082!GO:0042579;microbody;0.00783836270059082!GO:0004221;ubiquitin thiolesterase activity;0.00790310624949755!GO:0030131;clathrin adaptor complex;0.00790310624949755!GO:0006376;mRNA splice site selection;0.00795535895151441!GO:0000389;nuclear mRNA 3'-splice site recognition;0.00795535895151441!GO:0008047;enzyme activator activity;0.00797086636231612!GO:0032940;secretion by cell;0.00831672391117383!GO:0000087;M phase of mitotic cell cycle;0.00836974212338277!GO:0008094;DNA-dependent ATPase activity;0.00845244323451764!GO:0004003;ATP-dependent DNA helicase activity;0.00880820574298141!GO:0002474;antigen processing and presentation of peptide antigen via MHC class I;0.00954793148230216!GO:0000184;mRNA catabolic process, nonsense-mediated decay;0.00957801962620859!GO:0004527;exonuclease activity;0.00966007889768339!GO:0044452;nucleolar part;0.00966007889768339!GO:0030036;actin cytoskeleton organization and biogenesis;0.00966007889768339!GO:0048487;beta-tubulin binding;0.0100959759463553!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.010332346851854!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.010332346851854!GO:0042611;MHC protein complex;0.0104778534705696!GO:0007040;lysosome organization and biogenesis;0.0104803795110821!GO:0031625;ubiquitin protein ligase binding;0.010682381307161!GO:0032318;regulation of Ras GTPase activity;0.010712021318704!GO:0007067;mitosis;0.0108360932776037!GO:0043488;regulation of mRNA stability;0.0109893726564538!GO:0043487;regulation of RNA stability;0.0109893726564538!GO:0008250;oligosaccharyl transferase complex;0.0110725875075422!GO:0016281;eukaryotic translation initiation factor 4F complex;0.011214125996391!GO:0030258;lipid modification;0.0112752107059287!GO:0016584;nucleosome positioning;0.0115446344856814!GO:0009889;regulation of biosynthetic process;0.0121559459907422!GO:0008022;protein C-terminus binding;0.0124815064973108!GO:0046578;regulation of Ras protein signal transduction;0.0125616227291335!GO:0032200;telomere organization and biogenesis;0.012568638100814!GO:0000723;telomere maintenance;0.012568638100814!GO:0004177;aminopeptidase activity;0.0128285323043435!GO:0044438;microbody part;0.0130913002683082!GO:0044439;peroxisomal part;0.0130913002683082!GO:0007041;lysosomal transport;0.0132506906907143!GO:0005869;dynactin complex;0.0132922273726989!GO:0006607;NLS-bearing substrate import into nucleus;0.0134513659888392!GO:0048518;positive regulation of biological process;0.0135171827364567!GO:0030041;actin filament polymerization;0.0135427954166145!GO:0051101;regulation of DNA binding;0.0137053042537039!GO:0004518;nuclease activity;0.0137671934363007!GO:0004197;cysteine-type endopeptidase activity;0.013886914653648!GO:0006740;NADPH regeneration;0.013886914653648!GO:0006098;pentose-phosphate shunt;0.013886914653648!GO:0050790;regulation of catalytic activity;0.0139704098358951!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.0144052046228042!GO:0016311;dephosphorylation;0.0148175487541831!GO:0000287;magnesium ion binding;0.014903606945678!GO:0016791;phosphoric monoester hydrolase activity;0.0150215486559449!GO:0006635;fatty acid beta-oxidation;0.0151751317478451!GO:0004860;protein kinase inhibitor activity;0.0152471033451235!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.0152498626290791!GO:0015002;heme-copper terminal oxidase activity;0.0152498626290791!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.0152498626290791!GO:0004129;cytochrome-c oxidase activity;0.0152498626290791!GO:0016044;membrane organization and biogenesis;0.0160278214355565!GO:0006007;glucose catabolic process;0.0161540298515196!GO:0046467;membrane lipid biosynthetic process;0.0161625987889349!GO:0031124;mRNA 3'-end processing;0.0162342407144785!GO:0004576;oligosaccharyl transferase activity;0.0164177133492145!GO:0030522;intracellular receptor-mediated signaling pathway;0.0165559944650106!GO:0030125;clathrin vesicle coat;0.0168073775176114!GO:0030665;clathrin coated vesicle membrane;0.0168073775176114!GO:0006672;ceramide metabolic process;0.017313749865768!GO:0043022;ribosome binding;0.0173977781342044!GO:0051301;cell division;0.0175412687518045!GO:0018193;peptidyl-amino acid modification;0.0176841549768742!GO:0016790;thiolester hydrolase activity;0.0178004697925768!GO:0006769;nicotinamide metabolic process;0.0178546064204564!GO:0033116;ER-Golgi intermediate compartment membrane;0.0178728141156445!GO:0008017;microtubule binding;0.0179338274888682!GO:0045935;positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.0185534005477977!GO:0030029;actin filament-based process;0.0187190796154723!GO:0031903;microbody membrane;0.0193878989720455!GO:0005778;peroxisomal membrane;0.0193878989720455!GO:0006778;porphyrin metabolic process;0.0197688594977863!GO:0033013;tetrapyrrole metabolic process;0.0197688594977863!GO:0042158;lipoprotein biosynthetic process;0.0198994786463049!GO:0019318;hexose metabolic process;0.0199902413948769!GO:0045893;positive regulation of transcription, DNA-dependent;0.0200344935980228!GO:0022890;inorganic cation transmembrane transporter activity;0.0204771445672151!GO:0001891;phagocytic cup;0.0204852478219732!GO:0051059;NF-kappaB binding;0.0205674770457325!GO:0009966;regulation of signal transduction;0.0205954354160936!GO:0006367;transcription initiation from RNA polymerase II promoter;0.0207475125517557!GO:0046365;monosaccharide catabolic process;0.0208138420074331!GO:0051098;regulation of binding;0.021017739077621!GO:0007033;vacuole organization and biogenesis;0.0211492090947436!GO:0001836;release of cytochrome c from mitochondria;0.0214467188502521!GO:0046519;sphingoid metabolic process;0.0214812685632153!GO:0042440;pigment metabolic process;0.02157713443115!GO:0019362;pyridine nucleotide metabolic process;0.0219266759025006!GO:0000726;non-recombinational repair;0.0220855458969458!GO:0005996;monosaccharide metabolic process;0.0222055698662708!GO:0042168;heme metabolic process;0.0223463827285149!GO:0003746;translation elongation factor activity;0.0232451574195047!GO:0000049;tRNA binding;0.0232451574195047!GO:0030330;DNA damage response, signal transduction by p53 class mediator;0.0232451574195047!GO:0042585;germinal vesicle;0.0232653691291584!GO:0000075;cell cycle checkpoint;0.0234192549838041!GO:0018196;peptidyl-asparagine modification;0.0236163069209284!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.0236163069209284!GO:0006497;protein amino acid lipidation;0.0236642169158332!GO:0005096;GTPase activator activity;0.0238386818056439!GO:0000119;mediator complex;0.0239403689946465!GO:0045941;positive regulation of transcription;0.0241119475270759!GO:0051325;interphase;0.0241119475270759!GO:0000279;M phase;0.0244916317604643!GO:0004300;enoyl-CoA hydratase activity;0.0245828541169503!GO:0033673;negative regulation of kinase activity;0.0250707395679021!GO:0006469;negative regulation of protein kinase activity;0.0250707395679021!GO:0000018;regulation of DNA recombination;0.025091615314022!GO:0009615;response to virus;0.025091615314022!GO:0000738;DNA catabolic process, exonucleolytic;0.0253540945766437!GO:0008092;cytoskeletal protein binding;0.0255380849214368!GO:0050662;coenzyme binding;0.0258358222112927!GO:0031123;RNA 3'-end processing;0.0260049640671328!GO:0022884;macromolecule transmembrane transporter activity;0.0263442823089519!GO:0015450;P-P-bond-hydrolysis-driven protein transmembrane transporter activity;0.0263442823089519!GO:0007004;telomere maintenance via telomerase;0.0264083841001817!GO:0006661;phosphatidylinositol biosynthetic process;0.0264785140102961!GO:0016407;acetyltransferase activity;0.0267804451668776!GO:0016788;hydrolase activity, acting on ester bonds;0.0267804451668776!GO:0030176;integral to endoplasmic reticulum membrane;0.0269858372474957!GO:0000122;negative regulation of transcription from RNA polymerase II promoter;0.0272630442682381!GO:0030433;ER-associated protein catabolic process;0.0272630442682381!GO:0006515;misfolded or incompletely synthesized protein catabolic process;0.0272630442682381!GO:0003684;damaged DNA binding;0.0272959918712159!GO:0032984;macromolecular complex disassembly;0.0274673602793886!GO:0005669;transcription factor TFIID complex;0.0275217594486479!GO:0051539;4 iron, 4 sulfur cluster binding;0.0276967954579826!GO:0047485;protein N-terminus binding;0.0279462906328979!GO:0051329;interphase of mitotic cell cycle;0.0279462906328979!GO:0050811;GABA receptor binding;0.0283959534345127!GO:0043414;biopolymer methylation;0.029359543691563!GO:0051336;regulation of hydrolase activity;0.0293756942578314!GO:0031371;ubiquitin conjugating enzyme complex;0.0297945758430126!GO:0006368;RNA elongation from RNA polymerase II promoter;0.0297945758430126!GO:0019377;glycolipid catabolic process;0.0299567395364785!GO:0005097;Rab GTPase activator activity;0.0300859099203463!GO:0005850;eukaryotic translation initiation factor 2 complex;0.03065919015124!GO:0046164;alcohol catabolic process;0.0306977835837572!GO:0019320;hexose catabolic process;0.0308247408048829!GO:0046426;negative regulation of JAK-STAT cascade;0.0312343131032843!GO:0005657;replication fork;0.031365197645456!GO:0042771;DNA damage response, signal transduction by p53 class mediator resulting in induction of apoptosis;0.0314302045954906!GO:0019210;kinase inhibitor activity;0.0314753459585191!GO:0016627;oxidoreductase activity, acting on the CH-CH group of donors;0.0320041120396043!GO:0019752;carboxylic acid metabolic process;0.0322828794384235!GO:0042809;vitamin D receptor binding;0.032560617891167!GO:0016741;transferase activity, transferring one-carbon groups;0.0325935473402291!GO:0003725;double-stranded RNA binding;0.0328315979602064!GO:0043130;ubiquitin binding;0.033156178573716!GO:0032182;small conjugating protein binding;0.033156178573716!GO:0008168;methyltransferase activity;0.033156178573716!GO:0008629;induction of apoptosis by intracellular signals;0.0333273596080377!GO:0022411;cellular component disassembly;0.0333514764960993!GO:0005819;spindle;0.0336437978590837!GO:0030374;ligand-dependent nuclear receptor transcription coactivator activity;0.0340883467607042!GO:0005832;chaperonin-containing T-complex;0.0341042254916518!GO:0006643;membrane lipid metabolic process;0.0341419543736333!GO:0006733;oxidoreduction coenzyme metabolic process;0.0345663337611699!GO:0006406;mRNA export from nucleus;0.0348234214835915!GO:0016601;Rac protein signal transduction;0.0350462488728723!GO:0040029;regulation of gene expression, epigenetic;0.0350462488728723!GO:0004437;inositol or phosphatidylinositol phosphatase activity;0.035297055579162!GO:0006082;organic acid metabolic process;0.035499746325387!GO:0051287;NAD binding;0.0363966550248852!GO:0005784;translocon complex;0.0366630755869264!GO:0008180;signalosome;0.0367754802669135!GO:0000118;histone deacetylase complex;0.0375344597714529!GO:0051056;regulation of small GTPase mediated signal transduction;0.0377366765620841!GO:0045767;regulation of anti-apoptosis;0.0382129640302748!GO:0043071;positive regulation of non-apoptotic programmed cell death;0.038246499858276!GO:0006739;NADP metabolic process;0.0383012978850331!GO:0009112;nucleobase metabolic process;0.0385237700195214!GO:0033367;protein localization in mast cell secretory granule;0.0386282356985123!GO:0033365;protein localization in organelle;0.0386282356985123!GO:0033371;T cell secretory granule organization and biogenesis;0.0386282356985123!GO:0033373;maintenance of protease localization in mast cell secretory granule;0.0386282356985123!GO:0033375;protease localization in T cell secretory granule;0.0386282356985123!GO:0042629;mast cell granule;0.0386282356985123!GO:0033377;maintenance of protein localization in T cell secretory granule;0.0386282356985123!GO:0033364;mast cell secretory granule organization and biogenesis;0.0386282356985123!GO:0033380;granzyme B localization in T cell secretory granule;0.0386282356985123!GO:0033379;maintenance of protease localization in T cell secretory granule;0.0386282356985123!GO:0033370;maintenance of protein localization in mast cell secretory granule;0.0386282356985123!GO:0033368;protease localization in mast cell secretory granule;0.0386282356985123!GO:0033366;protein localization in secretory granule;0.0386282356985123!GO:0033382;maintenance of granzyme B localization in T cell secretory granule;0.0386282356985123!GO:0033374;protein localization in T cell secretory granule;0.0386282356985123!GO:0032981;mitochondrial respiratory chain complex I assembly;0.0386499126643407!GO:0010257;NADH dehydrogenase complex assembly;0.0386499126643407!GO:0033108;mitochondrial respiratory chain complex assembly;0.0386499126643407!GO:0015923;mannosidase activity;0.0390137185689103!GO:0031529;ruffle organization and biogenesis;0.0391554058678724!GO:0006378;mRNA polyadenylation;0.0395843537037233!GO:0051348;negative regulation of transferase activity;0.0396173260530805!GO:0008538;proteasome activator activity;0.0398211380134688!GO:0003857;3-hydroxyacyl-CoA dehydrogenase activity;0.0402007537664218!GO:0000781;chromosome, telomeric region;0.0402294557754705!GO:0032313;regulation of Rab GTPase activity;0.0406731298821804!GO:0032483;regulation of Rab protein signal transduction;0.0406731298821804!GO:0032482;Rab protein signal transduction;0.0406731298821804!GO:0019843;rRNA binding;0.0411393993091364!GO:0008408;3'-5' exonuclease activity;0.0430485202773005!GO:0042824;MHC class I peptide loading complex;0.0430905090997222!GO:0008601;protein phosphatase type 2A regulator activity;0.0430905090997222!GO:0042770;DNA damage response, signal transduction;0.0439428836997744!GO:0004721;phosphoprotein phosphatase activity;0.0452024563896087!GO:0000792;heterochromatin;0.0459226667779831!GO:0006506;GPI anchor biosynthetic process;0.0468869113964693!GO:0005905;coated pit;0.0472693482748698!GO:0046979;TAP2 binding;0.0472742470121758!GO:0046977;TAP binding;0.0472742470121758!GO:0046978;TAP1 binding;0.0472742470121758!GO:0000152;nuclear ubiquitin ligase complex;0.0474535266413364!GO:0045815;positive regulation of gene expression, epigenetic;0.0476075754348136!GO:0045736;negative regulation of cyclin-dependent protein kinase activity;0.0476075754348136!GO:0030911;TPR domain binding;0.0478818589466134!GO:0000776;kinetochore;0.048170411447624!GO:0051235;maintenance of localization;0.0482047898733575!GO:0008097;5S rRNA binding;0.0482632657466584!GO:0016780;phosphotransferase activity, for other substituted phosphate groups;0.0495624894487868!GO:0017134;fibroblast growth factor binding;0.0495624894487868!GO:0006595;polyamine metabolic process;0.0495980661482721!GO:0043241;protein complex disassembly;0.049760964288244 | |||
|sample_id=11903 | |sample_id=11903 | ||
|sample_note= | |sample_note= | ||
|sample_sex= | |sample_sex= | ||
|sample_species= | |sample_species=Human (Homo sapiens) | ||
|sample_strain= | |sample_strain= | ||
|sample_tissue= | |sample_tissue= | ||
|top_motifs=FOX{F1,F2,J1}:1.91657510577;NFKB1_REL_RELA:1.42446032232;HSF1,2:1.38955999835;TLX2:1.34596255299;STAT1,3:1.155895852;PAX6:1.0990246427;SREBF1,2:1.02175520244;FOXN1:0.989940937341;IRF1,2:0.949954312726;NKX6-1,2:0.846754221928;NFIX:0.84166429436;FOXA2:0.748619632296;PRRX1,2:0.735496758168;ATF5_CREB3:0.702537974536;EVI1:0.669863795346;FOXQ1:0.667216998405;RORA:0.615501979383;STAT5{A,B}:0.591427165471;CDX1,2,4:0.568433365502;HOX{A6,A7,B6,B7}:0.564823941778;SPI1:0.556717700982;RUNX1..3:0.556110185437;ESRRA:0.520531149927;RFX2..5_RFXANK_RFXAP:0.512730068261;FOXP3:0.491407475324;OCT4_SOX2{dimer}:0.488684320193;SPZ1:0.488224739777;BPTF:0.471547760711;ELF1,2,4:0.441951707508;ZBTB16:0.426630995777;NANOG{mouse}:0.411880442005;NKX2-2,8:0.411450480796;ATF2:0.401677898102;NANOG:0.392210918177;SPIB:0.337796629289;LMO2:0.327148965366;AHR_ARNT_ARNT2:0.323044936063;PDX1:0.322962797159;POU1F1:0.320323128874;JUN:0.293871161345;ELK1,4_GABP{A,B1}:0.267354374068;RXRA_VDR{dimer}:0.2599701772;ALX1:0.254736592866;SOX2:0.228404107775;CUX2:0.227157910674;GLI1..3:0.212865684712;NKX2-3_NKX2-5:0.197479461744;FOX{D1,D2}:0.194165261208;FOSL2:0.180471112316;HMX1:0.17813498283;ESR1:0.17637810714;IKZF2:0.175938550639;YY1:0.162438581394;CRX:0.160370164963;DMAP1_NCOR{1,2}_SMARC:0.155548134391;ZEB1:0.149253848145;HOXA9_MEIS1:0.144189371598;NR5A1,2:0.143880699634;ZNF148:0.127052923521;ETS1,2:0.125233479474;HNF4A_NR2F1,2:0.117731175164;POU2F1..3:0.100097793259;IRF7:0.0939260644198;TGIF1:0.0786446556309;NFE2:0.0630468094117;ALX4:0.0586980634334;HMGA1,2:0.0438258017739;SNAI1..3:0.03059560824;PBX1:0.0280262260442;PAX2:0.0179911627642;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.0124136253724;NFE2L1:0.00799688582549;MYB:0.00189934981788;CREB1:-0.000752245879971;ARID5B:-0.0233314266428;ZFP161:-0.051705835757;ATF4:-0.0634893217625;BACH2:-0.0731941704699;TAL1_TCF{3,4,12}:-0.0771017157299;NFE2L2:-0.0783714278928;TFCP2:-0.0858139845313;LHX3,4:-0.0973243992469;NKX3-1:-0.0998743855918;SRF:-0.135707427866;FOXM1:-0.165248845639;NRF1:-0.167319621459;HNF1A:-0.1674142706;PAX8:-0.190950629171;MYFfamily:-0.195734867611;GATA6:-0.19941451988;HAND1,2:-0.21801589118;EP300:-0.253748801872;NFY{A,B,C}:-0.258128066459;FOXP1:-0.260881828199;STAT2,4,6:-0.264007885081;SP1:-0.274045331186;NFIL3:-0.280951376048;ZNF143:-0.292862979455;MYOD1:-0.309852504636;TP53:-0.316960744333;ONECUT1,2:-0.319247686648;SOX5:-0.328354309669;MTF1:-0.336015702236;FOS_FOS{B,L1}_JUN{B,D}:-0.337778473427;SOX17:-0.342338777554;ATF6:-0.361000778029;MEF2{A,B,C,D}:-0.390935927662;HES1:-0.418599387752;PAX4:-0.445177451958;ZNF238:-0.44579109613;POU3F1..4:-0.45175695895;HOX{A4,D4}:-0.465876213907;AIRE:-0.467063577691;GFI1B:-0.46881508662;XBP1:-0.469253399157;MAZ:-0.476640408426;BREu{core}:-0.491222434287;MYBL2:-0.497045372061;TFAP2{A,C}:-0.516281469989;SMAD1..7,9:-0.535854032859;E2F1..5:-0.540135364332;LEF1_TCF7_TCF7L1,2:-0.540424996284;NFATC1..3:-0.545229737597;TOPORS:-0.550148625828;RFX1:-0.551072265405;NR6A1:-0.556869447367;NHLH1,2:-0.570569225892;VSX1,2:-0.573890171659;TBX4,5:-0.596291618006;POU5F1:-0.597678105186;FOXO1,3,4:-0.60900008162;TBP:-0.611744558458;HLF:-0.613633171816;MAFB:-0.634328817859;MED-1{core}:-0.636257991123;HBP1_HMGB_SSRP1_UBTF:-0.636463399431;GZF1:-0.638654868873;MTE{core}:-0.646599531841;HOX{A5,B5}:-0.651573846841;NR1H4:-0.657847206642;TFAP4:-0.677038397978;TLX1..3_NFIC{dimer}:-0.679403183523;AR:-0.682183792269;FOX{I1,J2}:-0.719927534776;PITX1..3:-0.722913631883;PAX5:-0.728283970321;CEBPA,B_DDIT3:-0.728385568084;EN1,2:-0.729551841268;XCPE1{core}:-0.786639708548;SOX{8,9,10}:-0.797186045995;CDC5L:-0.802239583426;NKX3-2:-0.80288489336;NKX2-1,4:-0.818249568172;PPARG:-0.824343351952;RBPJ:-0.873018532029;UFEwm:-0.879327752225;ZIC1..3:-0.8989321394;EBF1:-0.911631323069;IKZF1:-0.950680332504;TEAD1:-0.965721661108;TFDP1:-0.978453588553;GFI1:-0.989558266378;HIF1A:-0.992542155753;EGR1..3:-0.993077477023;MZF1:-0.99625219558;KLF4:-1.00031235838;ZBTB6:-1.00550073254;PAX3,7:-1.00582234046;HIC1:-1.01542580668;ZNF423:-1.01834592364;REST:-1.02027450059;GATA4:-1.06436269861;GTF2A1,2:-1.0788607899;PRDM1:-1.08046567421;PATZ1:-1.08877395712;RREB1:-1.11565278651;TFAP2B:-1.1708278462;GTF2I:-1.17173991605;ZNF384:-1.17830922073;NR3C1:-1.19963264749;TEF:-1.27802732197;ADNP_IRX_SIX_ZHX:-1.28018530764;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-1.30069758978;POU6F1:-1.34768516057;bHLH_family:-1.44901061743;PAX1,9:-1.47951745745;GCM1,2:-1.55842376228;RXR{A,B,G}:-1.66638308472;FOXD3:-1.66938338515;FOXL1:-1.82278870491;DBP:-2.28991727149;T:-2.31719032177 | |top_motifs=FOX{F1,F2,J1}:1.91657510577;NFKB1_REL_RELA:1.42446032232;HSF1,2:1.38955999835;TLX2:1.34596255299;STAT1,3:1.155895852;PAX6:1.0990246427;SREBF1,2:1.02175520244;FOXN1:0.989940937341;IRF1,2:0.949954312726;NKX6-1,2:0.846754221928;NFIX:0.84166429436;FOXA2:0.748619632296;PRRX1,2:0.735496758168;ATF5_CREB3:0.702537974536;EVI1:0.669863795346;FOXQ1:0.667216998405;RORA:0.615501979383;STAT5{A,B}:0.591427165471;CDX1,2,4:0.568433365502;HOX{A6,A7,B6,B7}:0.564823941778;SPI1:0.556717700982;RUNX1..3:0.556110185437;ESRRA:0.520531149927;RFX2..5_RFXANK_RFXAP:0.512730068261;FOXP3:0.491407475324;OCT4_SOX2{dimer}:0.488684320193;SPZ1:0.488224739777;BPTF:0.471547760711;ELF1,2,4:0.441951707508;ZBTB16:0.426630995777;NANOG{mouse}:0.411880442005;NKX2-2,8:0.411450480796;ATF2:0.401677898102;NANOG:0.392210918177;SPIB:0.337796629289;LMO2:0.327148965366;AHR_ARNT_ARNT2:0.323044936063;PDX1:0.322962797159;POU1F1:0.320323128874;JUN:0.293871161345;ELK1,4_GABP{A,B1}:0.267354374068;RXRA_VDR{dimer}:0.2599701772;ALX1:0.254736592866;SOX2:0.228404107775;CUX2:0.227157910674;GLI1..3:0.212865684712;NKX2-3_NKX2-5:0.197479461744;FOX{D1,D2}:0.194165261208;FOSL2:0.180471112316;HMX1:0.17813498283;ESR1:0.17637810714;IKZF2:0.175938550639;YY1:0.162438581394;CRX:0.160370164963;DMAP1_NCOR{1,2}_SMARC:0.155548134391;ZEB1:0.149253848145;HOXA9_MEIS1:0.144189371598;NR5A1,2:0.143880699634;ZNF148:0.127052923521;ETS1,2:0.125233479474;HNF4A_NR2F1,2:0.117731175164;POU2F1..3:0.100097793259;IRF7:0.0939260644198;TGIF1:0.0786446556309;NFE2:0.0630468094117;ALX4:0.0586980634334;HMGA1,2:0.0438258017739;SNAI1..3:0.03059560824;PBX1:0.0280262260442;PAX2:0.0179911627642;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.0124136253724;NFE2L1:0.00799688582549;MYB:0.00189934981788;CREB1:-0.000752245879971;ARID5B:-0.0233314266428;ZFP161:-0.051705835757;ATF4:-0.0634893217625;BACH2:-0.0731941704699;TAL1_TCF{3,4,12}:-0.0771017157299;NFE2L2:-0.0783714278928;TFCP2:-0.0858139845313;LHX3,4:-0.0973243992469;NKX3-1:-0.0998743855918;SRF:-0.135707427866;FOXM1:-0.165248845639;NRF1:-0.167319621459;HNF1A:-0.1674142706;PAX8:-0.190950629171;MYFfamily:-0.195734867611;GATA6:-0.19941451988;HAND1,2:-0.21801589118;EP300:-0.253748801872;NFY{A,B,C}:-0.258128066459;FOXP1:-0.260881828199;STAT2,4,6:-0.264007885081;SP1:-0.274045331186;NFIL3:-0.280951376048;ZNF143:-0.292862979455;MYOD1:-0.309852504636;TP53:-0.316960744333;ONECUT1,2:-0.319247686648;SOX5:-0.328354309669;MTF1:-0.336015702236;FOS_FOS{B,L1}_JUN{B,D}:-0.337778473427;SOX17:-0.342338777554;ATF6:-0.361000778029;MEF2{A,B,C,D}:-0.390935927662;HES1:-0.418599387752;PAX4:-0.445177451958;ZNF238:-0.44579109613;POU3F1..4:-0.45175695895;HOX{A4,D4}:-0.465876213907;AIRE:-0.467063577691;GFI1B:-0.46881508662;XBP1:-0.469253399157;MAZ:-0.476640408426;BREu{core}:-0.491222434287;MYBL2:-0.497045372061;TFAP2{A,C}:-0.516281469989;SMAD1..7,9:-0.535854032859;E2F1..5:-0.540135364332;LEF1_TCF7_TCF7L1,2:-0.540424996284;NFATC1..3:-0.545229737597;TOPORS:-0.550148625828;RFX1:-0.551072265405;NR6A1:-0.556869447367;NHLH1,2:-0.570569225892;VSX1,2:-0.573890171659;TBX4,5:-0.596291618006;POU5F1:-0.597678105186;FOXO1,3,4:-0.60900008162;TBP:-0.611744558458;HLF:-0.613633171816;MAFB:-0.634328817859;MED-1{core}:-0.636257991123;HBP1_HMGB_SSRP1_UBTF:-0.636463399431;GZF1:-0.638654868873;MTE{core}:-0.646599531841;HOX{A5,B5}:-0.651573846841;NR1H4:-0.657847206642;TFAP4:-0.677038397978;TLX1..3_NFIC{dimer}:-0.679403183523;AR:-0.682183792269;FOX{I1,J2}:-0.719927534776;PITX1..3:-0.722913631883;PAX5:-0.728283970321;CEBPA,B_DDIT3:-0.728385568084;EN1,2:-0.729551841268;XCPE1{core}:-0.786639708548;SOX{8,9,10}:-0.797186045995;CDC5L:-0.802239583426;NKX3-2:-0.80288489336;NKX2-1,4:-0.818249568172;PPARG:-0.824343351952;RBPJ:-0.873018532029;UFEwm:-0.879327752225;ZIC1..3:-0.8989321394;EBF1:-0.911631323069;IKZF1:-0.950680332504;TEAD1:-0.965721661108;TFDP1:-0.978453588553;GFI1:-0.989558266378;HIF1A:-0.992542155753;EGR1..3:-0.993077477023;MZF1:-0.99625219558;KLF4:-1.00031235838;ZBTB6:-1.00550073254;PAX3,7:-1.00582234046;HIC1:-1.01542580668;ZNF423:-1.01834592364;REST:-1.02027450059;GATA4:-1.06436269861;GTF2A1,2:-1.0788607899;PRDM1:-1.08046567421;PATZ1:-1.08877395712;RREB1:-1.11565278651;TFAP2B:-1.1708278462;GTF2I:-1.17173991605;ZNF384:-1.17830922073;NR3C1:-1.19963264749;TEF:-1.27802732197;ADNP_IRX_SIX_ZHX:-1.28018530764;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-1.30069758978;POU6F1:-1.34768516057;bHLH_family:-1.44901061743;PAX1,9:-1.47951745745;GCM1,2:-1.55842376228;RXR{A,B,G}:-1.66638308472;FOXD3:-1.66938338515;FOXL1:-1.82278870491;DBP:-2.28991727149;T:-2.31719032177 | ||
|xref= | |||
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Latest revision as of 18:28, 4 June 2020
| Name: | migratory langerhans cells, donor3 |
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| Species: | Human (Homo sapiens) |
| Library ID: | CNhs13547 |
| Sample type: | primary cells |
| Genomic View: | UCSC |
| RefEX: | Specific genes |
| FANTOM CAT: | 1, 2, 3, 4, 5, 6, 7 |
| CAGEd-oPOSSUM: | link |
| ZENBU report : | link |
| Additional information | ||||||||||||||||||||||||||||
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Sample information
RNA information
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| Download raw sequence, BAM & CTSS | ||||||||||||||
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs13547
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs13547
| Novel motif | Logo | P-value |
|---|---|---|
| 1 | 1 | 0.0583 |
| 10 | 10 | 0.0366 |
| 100 | 100 | 0.841 |
| 101 | 101 | 0.174 |
| 102 | 102 | 0.375 |
| 103 | 103 | 0.0198 |
| 104 | 104 | 0.329 |
| 105 | 105 | 0.121 |
| 106 | 106 | 0.0703 |
| 107 | 107 | 0.563 |
| 108 | 108 | 0.843 |
| 109 | 109 | 0.0425 |
| 11 | 11 | 0.271 |
| 110 | 110 | 0.366 |
| 111 | 111 | 0.0419 |
| 112 | 112 | 0.0228 |
| 113 | 113 | 0.877 |
| 114 | 114 | 0.00674 |
| 115 | 115 | 0.0255 |
| 116 | 116 | 0.77 |
| 117 | 117 | 0.0184 |
| 118 | 118 | 0.16 |
| 119 | 119 | 0.0272 |
| 12 | 12 | 0.662 |
| 120 | 120 | 0.694 |
| 121 | 121 | 0.825 |
| 122 | 122 | 0.789 |
| 123 | 123 | 0.79 |
| 124 | 124 | 0.172 |
| 125 | 125 | 0.94 |
| 126 | 126 | 0.0252 |
| 127 | 127 | 0.15 |
| 128 | 128 | 0.0238 |
| 129 | 129 | 0.237 |
| 13 | 13 | 0.0384 |
| 130 | 130 | 0.74 |
| 131 | 131 | 0.865 |
| 132 | 132 | 0.497 |
| 133 | 133 | 0.975 |
| 134 | 134 | 0.831 |
| 135 | 135 | 0.422 |
| 136 | 136 | 0.336 |
| 137 | 137 | 0.0359 |
| 138 | 138 | 0.744 |
| 139 | 139 | 0.115 |
| 14 | 14 | 0.318 |
| 140 | 140 | 0.0238 |
| 141 | 141 | 0.889 |
| 142 | 142 | 0.339 |
| 143 | 143 | 0.332 |
| 144 | 144 | 0.718 |
| 145 | 145 | 0.587 |
| 146 | 146 | 0.728 |
| 147 | 147 | 0.208 |
| 148 | 148 | 0.0609 |
| 149 | 149 | 0.457 |
| 15 | 15 | 0.0581 |
| 150 | 150 | 0.501 |
| 151 | 151 | 0.463 |
| 152 | 152 | 0.643 |
| 153 | 153 | 0.841 |
| 154 | 154 | 0.62 |
| 155 | 155 | 0.023 |
| 156 | 156 | 0.591 |
| 157 | 157 | 0.399 |
| 158 | 158 | 0.152 |
| 159 | 159 | 0.709 |
| 16 | 16 | 0.309 |
| 160 | 160 | 0.839 |
| 161 | 161 | 0.13 |
| 162 | 162 | 0.302 |
| 163 | 163 | 0.635 |
| 164 | 164 | 0.379 |
| 165 | 165 | 0.128 |
| 166 | 166 | 0.957 |
| 167 | 167 | 0.686 |
| 168 | 168 | 0.532 |
| 169 | 169 | 0.145 |
| 17 | 17 | 0.782 |
| 18 | 18 | 0.669 |
| 19 | 19 | 0.856 |
| 2 | 2 | 0.957 |
| 20 | 20 | 0.178 |
| 21 | 21 | 0.266 |
| 22 | 22 | 0.686 |
| 23 | 23 | 0.341 |
| 24 | 24 | 0.864 |
| 25 | 25 | 0.225 |
| 26 | 26 | 0.449 |
| 27 | 27 | 0.765 |
| 28 | 28 | 0.335 |
| 29 | 29 | 0.0662 |
| 3 | 3 | 0.0806 |
| 30 | 30 | 0.671 |
| 31 | 31 | 0.707 |
| 32 | 32 | 0.312 |
| 33 | 33 | 0.186 |
| 34 | 34 | 0.864 |
| 35 | 35 | 0.378 |
| 36 | 36 | 0.057 |
| 37 | 37 | 0.0931 |
| 38 | 38 | 0.279 |
| 39 | 39 | 0.989 |
| 4 | 4 | 0.357 |
| 40 | 40 | 0.0584 |
| 41 | 41 | 0.268 |
| 42 | 42 | 0.188 |
| 43 | 43 | 0.111 |
| 44 | 44 | 0.0241 |
| 45 | 45 | 0.886 |
| 46 | 46 | 0.18 |
| 47 | 47 | 0.178 |
| 48 | 48 | 0.251 |
| 49 | 49 | 0.0708 |
| 5 | 5 | 0.478 |
| 50 | 50 | 0.984 |
| 51 | 51 | 0.328 |
| 52 | 52 | 0.137 |
| 53 | 53 | 0.484 |
| 54 | 54 | 0.393 |
| 55 | 55 | 0.651 |
| 56 | 56 | 0.754 |
| 57 | 57 | 0.245 |
| 58 | 58 | 0.0528 |
| 59 | 59 | 0.368 |
| 6 | 6 | 0.984 |
| 60 | 60 | 0.0555 |
| 61 | 61 | 0.264 |
| 62 | 62 | 0.029 |
| 63 | 63 | 0.49 |
| 64 | 64 | 0.341 |
| 65 | 65 | 0.322 |
| 66 | 66 | 0.443 |
| 67 | 67 | 0.224 |
| 68 | 68 | 0.586 |
| 69 | 69 | 0.374 |
| 7 | 7 | 0.0864 |
| 70 | 70 | 0.0885 |
| 71 | 71 | 0.147 |
| 72 | 72 | 0.179 |
| 73 | 73 | 0.546 |
| 74 | 74 | 0.692 |
| 75 | 75 | 0.111 |
| 76 | 76 | 0.278 |
| 77 | 77 | 0.964 |
| 78 | 78 | 0.088 |
| 79 | 79 | 0.809 |
| 8 | 8 | 0.709 |
| 80 | 80 | 0.806 |
| 81 | 81 | 0.517 |
| 82 | 82 | 0.275 |
| 83 | 83 | 0.419 |
| 84 | 84 | 0.174 |
| 85 | 85 | 0.401 |
| 86 | 86 | 0.44 |
| 87 | 87 | 0.128 |
| 88 | 88 | 0.232 |
| 89 | 89 | 0.41 |
| 9 | 9 | 0.651 |
| 90 | 90 | 0.00795 |
| 91 | 91 | 0.821 |
| 92 | 92 | 0.554 |
| 93 | 93 | 0.482 |
| 94 | 94 | 0.0416 |
| 95 | 95 | 0.0226 |
| 96 | 96 | 0.0322 |
| 97 | 97 | 0.902 |
| 98 | 98 | 0.0919 |
| 99 | 99 | 0.772 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs13547
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
EFO:0002091 biological replicate
FF:0011136 human migratory langerhans cells sample
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000988 (hematopoietic cell)
0000548 (animal cell)
0002371 (somatic cell)
0000219 (motile cell)
0000738 (leukocyte)
0000990 (conventional dendritic cell)
0000255 (eukaryotic cell)
0000451 (dendritic cell)
0000453 (Langerhans cell)
FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0011136 (human migratory langerhans cells sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000049 (common myeloid progenitor)
CL:0000134 (mesenchymal cell)
