FF:11905-125F6: Difference between revisions
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{{f5samples | {{f5samples | ||
|ancestors_in_anatomy_facet= | |DRA_sample_Accession=CAGE@SAMD00005294 | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003 | |accession_numbers=CAGE;DRX008544;DRR009416;DRZ000841;DRZ002226;DRZ012191;DRZ013576 | ||
|ancestors_in_anatomy_facet= | |||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000988,CL:0000548,CL:0002371,CL:0000219,CL:0000738,CL:0000990,CL:0000255,CL:0000451,CL:0000453,CL:0000840,CL:0001014,CL:0001016 | |||
|ancestors_in_disease_facet= | |ancestors_in_disease_facet= | ||
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000001,FF:0011135 | |||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|datafreeze_phase= | |data_phase=2 | ||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score=chr19:45971246..45971265,+!p1@FOSB!2.47!5021.97!FOSB;;chr11:47400078..47400106,-!p1@SPI1!2.42!264.64!SPI1;;chr17:80797886..80797906,-!p1@ZNF750!2.32!206.61!ZNF750;;chr9:102584159..102584174,+!p2@NR4A3!2.29!342.02!NR4A3;;chr1:209979467..209979494,-!p1@IRF6!2.28!213.57!IRF6;;chr12:52445218..52445237,+!p1@NR4A1!2.17!1745.70!NR4A1;;chr1:25291475..25291511,-!p2@RUNX3!2.17!148.57!RUNX3;;chr18:77155922..77155939,+!p1@NFATC1!2.16!372.20!NFATC1;;chr2:157189180..157189290,-!p1@NR4A2!2.12!640.71!NR4A2;;chr16:85932760..85932775,+!p1@IRF8!2.12!130.77!IRF8;;chr4:57547454..57547469,-!p1@HOPX!2.05!111.43!HOPX;;chr12:72056800..72056834,+!p1@THAP2!2.04!143.15!THAP2;;chr19:36391434..36391450,-!p1@NFKBID!2.03!200.41!NFKBID;;chr11:47400062..47400077,-!p2@SPI1!1.97!92.08!SPI1;;chr11:65554528..65554546,+!p1@OVOL1!1.94!85.89!OVOL1;;chr15:60884706..60884743,-!p1@RORA!1.93!414.76!RORA;;chr9:102584262..102584276,+!p1@NR4A3!1.92!177.20!NR4A3;;chr2:68592406..68592424,+!p1@PLEK!1.91!79.70!PLEK;;chr17:7493405..7493419,-!p1@SOX15!1.91!79.70!SOX15;;chr11:34642612..34642646,+!p1@EHF!1.89!77.38!EHF;;chr1:209979411..209979433,-!p2@IRF6!1.88!74.28!IRF6;;chr8:22550982..22550999,-!p1@EGR3!1.87!196.55!EGR3;;chr19:54058073..54058088,+!p1@ZNF331!1.85!69.64!ZNF331;;chr11:65554563..65554576,+!p2@OVOL1!1.82!65.00!OVOL1;;chr22:38597987..38598021,+!p2@MAFF!1.80!359.82!MAFF;;chr14:35873947..35873965,-!p1@NFKBIA!1.78!3523.12!NFKBIA;;chr7:64342913..64342935,+!p2@ZNF273!1.75!55.71!ZNF273;;chr1:212782094..212782109,+!p1@ATF3!1.72!1317.78!ATF3;;chr14:75745523..75745537,+!p1@FOS!1.69!5406.55!FOS;;chr11:65668011..65668020,-!p3@FOSL1!1.69!47.98!FOSL1;;chr2:122042770..122042785,-!p1@TFCP2L1!1.67!45.65!TFCP2L1;;chr20:55204351..55204377,+!p1@TFAP2C!1.66!56.49!TFAP2C;;chr20:50159198..50159299,-!p1@NFATC2!1.64!61.90!NFATC2;;chr12:72056749..72056767,+!p6@THAP2!1.63!46.43!THAP2;;chr10:104154415..104154434,+!p5@NFKB2!1.63!41.79!NFKB2;;chr1:37940170..37940190,+!p1@ZC3H12A!1.61!461.96!ZC3H12A;;chr3:39195037..39195069,-!p2@CSRNP1!1.61!238.33!CSRNP1;;chr6:106534192..106534224,+!p1@PRDM1!1.61!109.11!PRDM1;;chr12:54785074..54785122,-!p2@ZNF385A!1.61!59.58!ZNF385A;;chr2:61108878..61108891,+!p5@REL!1.61!39.46!REL;;chr14:75746722..75746777,+!p2@FOS!1.60!48.75!FOS;;chr9:110252035..110252057,-!p1@KLF4!1.59!578.03!KLF4;;chr2:10091815..10091864,+!p1@GRHL1!1.59!49.52!GRHL1;;chr2:61108695..61108753,+!p1@REL!1.58!240.65!REL;;chr9:102584128..102584144,+!p3@NR4A3!1.57!68.09!NR4A3;;chr15:101069113..101069169,-!p1@CERS3!1.57!36.37!CERS3;;chr9:102584241..102584261,+!p4@NR4A3!1.56!53.39!NR4A3;;chr12:54785054..54785072,-!p4@ZNF385A!1.55!38.69!ZNF385A;;chr3:39195075..39195088,-!p1@CSRNP1!1.54!201.96!CSRNP1;;chr12:72056773..72056796,+!p3@THAP2!1.53!42.56!THAP2;;chr2:61108808..61108821,+!p3@REL!1.52!40.24!REL;;chr6:391743..391759,+!p1@IRF4!1.50!30.95!IRF4;;chr14:35872926..35872951,-!p4@NFKBIA!1.49!41.79!NFKBIA;;chr2:70142232..70142251,+!p1@MXD1!1.48!158.63!MXD1;;chr2:73520667..73520683,-!p1@EGR4!1.47!28.63!EGR4;;chr10:104155480..104155534,+!p2@NFKB2!1.46!173.33!NFKB2;;chr2:208394817..208394834,+!p3@CREB1!1.46!109.88!CREB1;;chr4:103422499..103422632,+!p1@NFKB1!1.45!540.11!NFKB1;;chr7:28725715..28725727,+!p3@CREB5!1.45!31.73!CREB5;;chr19:6110474..6110551,-!p1@RFX2!1.44!155.53!RFX2;;chr14:35872453..35872485,-!p2@NFKBIA!1.44!63.45!NFKBIA;;chr8:81397820..81397836,+!p2@ZBTB10!1.44!33.27!ZBTB10;;chr9:102584278..102584285,+!p5@NR4A3!1.44!26.31!NR4A3;;chr7:50344251..50344288,+!p3@IKZF1!1.42!25.54!IKZF1;;chr11:47400032..47400043,-!p5@SPI1!1.42!25.54!SPI1;;chr19:54041669..54041697,+!p2@ZNF331!1.40!23.99!ZNF331;;chr11:65686802..65686818,+!p6@DRAP1!1.39!40.24!DRAP1;;chr19:36389729..36389751,-!p3@NFKBID!1.38!23.21!NFKBID;;chrX:56258900..56258917,+!p4@KLF8!1.38!23.21!KLF8;;chr1:24646263..24646277,+!p4@GRHL3!1.37!22.44!GRHL3;;chr11:120110863..120110908,+!p2@POU2F3!1.37!22.44!POU2F3;;chr11:47399996..47400014,-!p4@SPI1!1.37!22.44!SPI1;;chr7:64342942..64342975,+!p5@ZNF273!1.36!21.67!ZNF273;;chr3:101546827..101546847,+!p2@NFKBIZ!1.35!30.18!NFKBIZ;;chr8:81397876..81397898,+!p5@ZBTB10!1.34!24.76!ZBTB10;;chr7:50344289..50344323,+!p1@IKZF1!1.34!20.89!IKZF1;;chr6:44233252..44233296,-!p1@NFKBIE!1.33!196.55!NFKBIE;;chr14:35872962..35873025,-!p3@NFKBIA!1.33!51.07!NFKBIA;;chr3:101568349..101568365,+!p1@NFKBIZ!1.32!988.92!NFKBIZ;;chr17:26833339..26833378,+!p1@FOXN1!1.32!20.12!FOXN1;;chr11:120107344..120107351,+!p1@POU2F3!1.31!23.21!POU2F3;;chr17:53342311..53342400,+!p1@HLF!1.31!22.44!HLF;;chr7:96654133..96654150,-!p1@DLX5!1.31!19.35!DLX5;;chr19:9732460..9732472,-!p2@ZNF561!1.31!19.35!ZNF561;;chr1:157108130..157108173,-!p1@ETV3!1.30!133.09!ETV3;;chr19:33793430..33793447,-!p1@CEBPA!1.30!78.93!CEBPA;;chr19:45252008..45252024,+!p2@BCL3!1.29!60.36!BCL3;;chr7:104654690..104654704,+!p2@MLL5!1.29!36.37!MLL5;;chr11:47399947..47399961,-!p3@SPI1!1.29!18.57!SPI1;;chr12:54778471..54778528,-!p1@ZNF385A!1.29!18.57!ZNF385A;;chr16:31885093..31885165,+!p1@ZNF267!1.28!265.41!ZNF267;;chr7:28725740..28725778,+!p1@CREB5!1.28!157.08!CREB5;;chr3:37218023..37218069,-!p3@LRRFIP2!1.27!27.86!LRRFIP2;;chr2:238600998..238601013,+!p5@LRRFIP1!1.27!17.80!LRRFIP1;;chr9:129567282..129567353,+!p1@ZBTB43!1.26!222.08!ZBTB43;;chr10:104155659..104155676,+!p4@NFKB2!1.26!21.67!NFKB2;;chr10:3827371..3827386,-!p2@KLF6!1.25!136.96!KLF6;;chr6:126240380..126240430,+!p2@NCOA7!1.24!42.56!NCOA7;;chr6:106534230..106534254,+!p2@PRDM1!1.24!41.01!PRDM1;;chr15:60884747..60884774,-!p3@RORA!1.24!39.46!RORA;;chr17:38256799..38256815,-!p3@NR1D1!1.24!29.40!NR1D1;;chr2:61108771..61108789,+!p4@REL!1.24!24.76!REL;;chrX:56258844..56258882,+!p1@KLF8!1.24!22.44!KLF8;;chr8:102218439..102218455,-!p3@ZNF706!1.24!16.25!ZNF706;;chr8:81397846..81397860,+!p3@ZBTB10!1.23!20.12!ZBTB10;;chr3:5022272..5022321,+!p7@BHLHE40!1.22!15.48!BHLHE40;;chr16:67881534..67881549,-!p4@CENPT!1.22!15.48!CENPT;;chr11:47400045..47400060,-!p6@SPI1!1.22!15.48!SPI1;;chr1:209979375..209979386,-!p4@IRF6!1.22!15.48!IRF6;;chr10:8096631..8096660,+!p1@GATA3!1.20!17.80!GATA3;;chr13:41593392..41593403,-!p7@ELF1!1.20!14.70!ELF1;;chr1:24645921..24645973,+!p2@GRHL3!1.20!14.70!GRHL3;;chr1:24645832..24645853,+!p1@GRHL3!1.17!13.93!GRHL3;;chr2:157189317..157189325,-!p8@NR4A2!1.17!13.93!NR4A2;;chr19:45504688..45504782,+!p1@RELB!1.16!81.25!RELB;;chr13:41635512..41635539,-!p2@ELF1!1.16!74.28!ELF1;;chr14:103059006..103059017,+!p2@RCOR1!1.16!20.89!RCOR1;;chr1:38512457..38512474,-!p1@POU3F1!1.16!14.70!POU3F1;;chr6:12011943..12012015,+!p2@HIVEP1!1.15!42.56!HIVEP1;;chr1:25256756..25256774,-!p1@RUNX3!1.15!24.76!RUNX3;;chr11:129245526..129245553,+!p1@BARX2!1.15!13.15!BARX2;;chrX:106960285..106960299,-!p1@TSC22D3!1.14!339.70!TSC22D3;;chr1:91487806..91487826,-!p5@ZNF644!1.14!22.44!ZNF644;;chr10:104154246..104154347,+!p3@NFKB2!1.13!75.83!NFKB2;;chr3:5021268..5021282,+!p4@BHLHE40!1.13!25.54!BHLHE40;;chrX:56258929..56258941,+!p7@KLF8!1.13!12.38!KLF8;;chr3:63897742..63897797,+!p2@ATXN7!1.12!41.01!ATXN7;;chr19:45250948..45250998,+!p3@BCL3!1.12!30.95!BCL3;;chr7:106809470..106809481,+!p2@HBP1!1.12!17.02!HBP1;;chr5:131826457..131826514,-!p1@IRF1!1.11!458.86!IRF1;;chr1:91487774..91487802,-!p2@ZNF644!1.11!31.73!ZNF644;;chr2:157199008..157199023,-!p3@NR4A2!1.11!24.76!NR4A2;;chr17:46620898..46620927,-!p9@HOXB2!1.11!13.93!HOXB2;;chr14:35872494..35872511,-!p5@NFKBIA!1.10!15.48!NFKBIA;;chr12:52448151..52448200,+!p8@NR4A1!1.10!11.61!NR4A1;;chr14:35872542..35872553,-!p10@NFKBIA!1.10!11.61!NFKBIA;;chr17:48072574..48072597,-!p1@DLX3!1.10!11.61!DLX3;;chr8:102504979..102505010,+!p2@GRHL2!1.10!11.61!GRHL2;;chr2:68592394..68592405,+!p2@PLEK!1.10!11.61!PLEK;;chr19:12902289..12902307,+!p1@JUNB!1.09!2613.13!JUNB;;chr10:3827389..3827408,-!p1@KLF6!1.09!858.15!KLF6;;chr10:35416142..35416169,+!p3@CREM!1.09!30.18!CREM;;chrX:84498989..84499003,+!p1@ZNF711!1.09!15.48!ZNF711;;chr2:8822176..8822196,+!p1@ID2!1.08!1563.85!ID2;;chr1:156470515..156470542,-!p2@MEF2D!1.08!58.04!MEF2D;;chr1:91487836..91487854,-!p3@ZNF644!1.08!25.54!ZNF644;;chr13:41593425..41593480,-!p1@ELF1!1.07!68.87!ELF1;;chr3:37217736..37217753,-!p2@LRRFIP2!1.07!45.65!LRRFIP2;;chr12:52448420..52448460,+!p5@NR4A1!1.07!10.83!NR4A1;;chr14:75747250..75747267,+!p5@FOS!1.07!10.83!FOS;;chr6:28048343..28048354,+!p1@ZNF165!1.07!10.83!ZNF165;;chr10:64576105..64576133,-!p1@EGR2!1.06!21.67!EGR2;;chr3:150126904..150126958,+!p7@TSC22D2!1.06!18.57!TSC22D2;;chr5:43121586..43121601,+!p10@ZNF131!1.05!11.61!ZNF131;;chr6:91006518..91006570,-!p1@BACH2!1.04!23.21!BACH2;;chr11:65430535..65430549,-!p4@RELA!1.04!11.61!RELA;;chr10:135121763..135121783,+!p5@ZNF511!1.04!10.06!ZNF511;;chr7:50343634..50343717,+!p2@IKZF1!1.04!10.06!IKZF1;;chr19:45972203..45972226,+!p5@FOSB!1.04!10.06!FOSB;;chr1:201979743..201979762,+!p1@ELF3!1.04!10.06!ELF3;;chr1:25256439..25256476,-!p3@RUNX3!1.04!10.06!RUNX3;;chr1:25291461..25291472,-!p11@RUNX3!1.04!10.06!RUNX3;;chr9:139294614..139294633,-!p@chr9:139294614..139294633,-!1.03!62.68!SNAPC4;;chr7:17338324..17338341,+!p3@AHR!1.03!33.27!AHR;;chr5:43121711..43121753,+!p2@ZNF131!1.03!28.63!ZNF131;;chr12:24715376..24715432,-!p1@SOX5!1.03!12.38!SOX5;;chr11:65667846..65667868,-!p1@FOSL1!1.02!253.03!FOSL1;;chr12:48298765..48298783,-!p2@VDR!1.02!20.12!VDR;;chr7:104654718..104654741,+!p3@MLL5!1.02!13.93!MLL5;;chr3:5021113..5021180,+!p1@BHLHE40!1.01!652.32!BHLHE40;;chr22:38598086..38598105,+!p1@MAFF!1.01!99.82!MAFF;;chr17:38498594..38498661,+!p2@RARA!1.01!31.73!RARA;;chr17:40429090..40429125,-!p3@STAT5B!1.01!9.29!STAT5B;;chr12:52448213..52448262,+!p6@NR4A1!1.01!9.29!NR4A1;;chr12:72056706..72056717,+!p10@THAP2!1.01!9.29!THAP2;;chr13:41593405..41593416,-!p9@ELF1!1.01!9.29!ELF1;;chr19:45251395..45251432,+!p8@BCL3!1.01!9.29!BCL3;;chr1:209979449..209979460,-!p3@IRF6!1.01!9.29!IRF6;;chr2:10091922..10091935,+!p3@GRHL1!1.01!9.29!GRHL1;;chr2:157186630..157186686,-!p6@NR4A2!1.01!9.29!NR4A2;;chr3:169490834..169490863,+!p4@MYNN!1.01!9.29!MYNN;;chr3:189507432..189507459,+!p1@TP63!1.01!9.29!TP63;;chr4:106066730..106066754,+!p6@TET2!1.01!9.29!TET2;;chr4:83822294..83822306,+!p8@THAP9!1.01!9.29!THAP9;;chr11:13299319..13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| |expression_enrichment_score=chr19:45971246..45971265,+!p1@FOSB!2.47!5021.97!FOSB;;chr11:47400078..47400106,-!p1@SPI1!2.42!264.64!SPI1;;chr17:80797886..80797906,-!p1@ZNF750!2.32!206.61!ZNF750;;chr9:102584159..102584174,+!p2@NR4A3!2.29!342.02!NR4A3;;chr1:209979467..209979494,-!p1@IRF6!2.28!213.57!IRF6;;chr12:52445218..52445237,+!p1@NR4A1!2.17!1745.70!NR4A1;;chr1:25291475..25291511,-!p2@RUNX3!2.17!148.57!RUNX3;;chr18:77155922..77155939,+!p1@NFATC1!2.16!372.20!NFATC1;;chr2:157189180..157189290,-!p1@NR4A2!2.12!640.71!NR4A2;;chr16:85932760..85932775,+!p1@IRF8!2.12!130.77!IRF8;;chr4:57547454..57547469,-!p1@HOPX!2.05!111.43!HOPX;;chr12:72056800..72056834,+!p1@THAP2!2.04!143.15!THAP2;;chr19:36391434..36391450,-!p1@NFKBID!2.03!200.41!NFKBID;;chr11:47400062..47400077,-!p2@SPI1!1.97!92.08!SPI1;;chr11:65554528..65554546,+!p1@OVOL1!1.94!85.89!OVOL1;;chr15:60884706..60884743,-!p1@RORA!1.93!414.76!RORA;;chr9:102584262..102584276,+!p1@NR4A3!1.92!177.20!NR4A3;;chr2:68592406..68592424,+!p1@PLEK!1.91!79.70!PLEK;;chr17:7493405..7493419,-!p1@SOX15!1.91!79.70!SOX15;;chr11:34642612..34642646,+!p1@EHF!1.89!77.38!EHF;;chr1:209979411..209979433,-!p2@IRF6!1.88!74.28!IRF6;;chr8:22550982..22550999,-!p1@EGR3!1.87!196.55!EGR3;;chr19:54058073..54058088,+!p1@ZNF331!1.85!69.64!ZNF331;;chr11:65554563..65554576,+!p2@OVOL1!1.82!65.00!OVOL1;;chr22:38597987..38598021,+!p2@MAFF!1.80!359.82!MAFF;;chr14:35873947..35873965,-!p1@NFKBIA!1.78!3523.12!NFKBIA;;chr7:64342913..64342935,+!p2@ZNF273!1.75!55.71!ZNF273;;chr1:212782094..212782109,+!p1@ATF3!1.72!1317.78!ATF3;;chr14:75745523..75745537,+!p1@FOS!1.69!5406.55!FOS;;chr11:65668011..65668020,-!p3@FOSL1!1.69!47.98!FOSL1;;chr2:122042770..122042785,-!p1@TFCP2L1!1.67!45.65!TFCP2L1;;chr20:55204351..55204377,+!p1@TFAP2C!1.66!56.49!TFAP2C;;chr20:50159198..50159299,-!p1@NFATC2!1.64!61.90!NFATC2;;chr12:72056749..72056767,+!p6@THAP2!1.63!46.43!THAP2;;chr10:104154415..104154434,+!p5@NFKB2!1.63!41.79!NFKB2;;chr1:37940170..37940190,+!p1@ZC3H12A!1.61!461.96!ZC3H12A;;chr3:39195037..39195069,-!p2@CSRNP1!1.61!238.33!CSRNP1;;chr6:106534192..106534224,+!p1@PRDM1!1.61!109.11!PRDM1;;chr12:54785074..54785122,-!p2@ZNF385A!1.61!59.58!ZNF385A;;chr2:61108878..61108891,+!p5@REL!1.61!39.46!REL;;chr14:75746722..75746777,+!p2@FOS!1.60!48.75!FOS;;chr9:110252035..110252057,-!p1@KLF4!1.59!578.03!KLF4;;chr2:10091815..10091864,+!p1@GRHL1!1.59!49.52!GRHL1;;chr2:61108695..61108753,+!p1@REL!1.58!240.65!REL;;chr9:102584128..102584144,+!p3@NR4A3!1.57!68.09!NR4A3;;chr15:101069113..101069169,-!p1@CERS3!1.57!36.37!CERS3;;chr9:102584241..102584261,+!p4@NR4A3!1.56!53.39!NR4A3;;chr12:54785054..54785072,-!p4@ZNF385A!1.55!38.69!ZNF385A;;chr3:39195075..39195088,-!p1@CSRNP1!1.54!201.96!CSRNP1;;chr12:72056773..72056796,+!p3@THAP2!1.53!42.56!THAP2;;chr2:61108808..61108821,+!p3@REL!1.52!40.24!REL;;chr6:391743..391759,+!p1@IRF4!1.50!30.95!IRF4;;chr14:35872926..35872951,-!p4@NFKBIA!1.49!41.79!NFKBIA;;chr2:70142232..70142251,+!p1@MXD1!1.48!158.63!MXD1;;chr2:73520667..73520683,-!p1@EGR4!1.47!28.63!EGR4;;chr10:104155480..104155534,+!p2@NFKB2!1.46!173.33!NFKB2;;chr2:208394817..208394834,+!p3@CREB1!1.46!109.88!CREB1;;chr4:103422499..103422632,+!p1@NFKB1!1.45!540.11!NFKB1;;chr7:28725715..28725727,+!p3@CREB5!1.45!31.73!CREB5;;chr19:6110474..6110551,-!p1@RFX2!1.44!155.53!RFX2;;chr14:35872453..35872485,-!p2@NFKBIA!1.44!63.45!NFKBIA;;chr8:81397820..81397836,+!p2@ZBTB10!1.44!33.27!ZBTB10;;chr9:102584278..102584285,+!p5@NR4A3!1.44!26.31!NR4A3;;chr7:50344251..50344288,+!p3@IKZF1!1.42!25.54!IKZF1;;chr11:47400032..47400043,-!p5@SPI1!1.42!25.54!SPI1;;chr19:54041669..54041697,+!p2@ZNF331!1.40!23.99!ZNF331;;chr11:65686802..65686818,+!p6@DRAP1!1.39!40.24!DRAP1;;chr19:36389729..36389751,-!p3@NFKBID!1.38!23.21!NFKBID;;chrX:56258900..56258917,+!p4@KLF8!1.38!23.21!KLF8;;chr1:24646263..24646277,+!p4@GRHL3!1.37!22.44!GRHL3;;chr11:120110863..120110908,+!p2@POU2F3!1.37!22.44!POU2F3;;chr11:47399996..47400014,-!p4@SPI1!1.37!22.44!SPI1;;chr7:64342942..64342975,+!p5@ZNF273!1.36!21.67!ZNF273;;chr3:101546827..101546847,+!p2@NFKBIZ!1.35!30.18!NFKBIZ;;chr8:81397876..81397898,+!p5@ZBTB10!1.34!24.76!ZBTB10;;chr7:50344289..50344323,+!p1@IKZF1!1.34!20.89!IKZF1;;chr6:44233252..44233296,-!p1@NFKBIE!1.33!196.55!NFKBIE;;chr14:35872962..35873025,-!p3@NFKBIA!1.33!51.07!NFKBIA;;chr3:101568349..101568365,+!p1@NFKBIZ!1.32!988.92!NFKBIZ;;chr17:26833339..26833378,+!p1@FOXN1!1.32!20.12!FOXN1;;chr11:120107344..120107351,+!p1@POU2F3!1.31!23.21!POU2F3;;chr17:53342311..53342400,+!p1@HLF!1.31!22.44!HLF;;chr7:96654133..96654150,-!p1@DLX5!1.31!19.35!DLX5;;chr19:9732460..9732472,-!p2@ZNF561!1.31!19.35!ZNF561;;chr1:157108130..157108173,-!p1@ETV3!1.30!133.09!ETV3;;chr19:33793430..33793447,-!p1@CEBPA!1.30!78.93!CEBPA;;chr19:45252008..45252024,+!p2@BCL3!1.29!60.36!BCL3;;chr7:104654690..104654704,+!p2@MLL5!1.29!36.37!MLL5;;chr11:47399947..47399961,-!p3@SPI1!1.29!18.57!SPI1;;chr12:54778471..54778528,-!p1@ZNF385A!1.29!18.57!ZNF385A;;chr16:31885093..31885165,+!p1@ZNF267!1.28!265.41!ZNF267;;chr7:28725740..28725778,+!p1@CREB5!1.28!157.08!CREB5;;chr3:37218023..37218069,-!p3@LRRFIP2!1.27!27.86!LRRFIP2;;chr2:238600998..238601013,+!p5@LRRFIP1!1.27!17.80!LRRFIP1;;chr9:129567282..129567353,+!p1@ZBTB43!1.26!222.08!ZBTB43;;chr10:104155659..104155676,+!p4@NFKB2!1.26!21.67!NFKB2;;chr10:3827371..3827386,-!p2@KLF6!1.25!136.96!KLF6;;chr6:126240380..126240430,+!p2@NCOA7!1.24!42.56!NCOA7;;chr6:106534230..106534254,+!p2@PRDM1!1.24!41.01!PRDM1;;chr15:60884747..60884774,-!p3@RORA!1.24!39.46!RORA;;chr17:38256799..38256815,-!p3@NR1D1!1.24!29.40!NR1D1;;chr2:61108771..61108789,+!p4@REL!1.24!24.76!REL;;chrX:56258844..56258882,+!p1@KLF8!1.24!22.44!KLF8;;chr8:102218439..102218455,-!p3@ZNF706!1.24!16.25!ZNF706;;chr8:81397846..81397860,+!p3@ZBTB10!1.23!20.12!ZBTB10;;chr3:5022272..5022321,+!p7@BHLHE40!1.22!15.48!BHLHE40;;chr16:67881534..67881549,-!p4@CENPT!1.22!15.48!CENPT;;chr11:47400045..47400060,-!p6@SPI1!1.22!15.48!SPI1;;chr1:209979375..209979386,-!p4@IRF6!1.22!15.48!IRF6;;chr10:8096631..8096660,+!p1@GATA3!1.20!17.80!GATA3;;chr13:41593392..41593403,-!p7@ELF1!1.20!14.70!ELF1;;chr1:24645921..24645973,+!p2@GRHL3!1.20!14.70!GRHL3;;chr1:24645832..24645853,+!p1@GRHL3!1.17!13.93!GRHL3;;chr2:157189317..157189325,-!p8@NR4A2!1.17!13.93!NR4A2;;chr19:45504688..45504782,+!p1@RELB!1.16!81.25!RELB;;chr13:41635512..41635539,-!p2@ELF1!1.16!74.28!ELF1;;chr14:103059006..103059017,+!p2@RCOR1!1.16!20.89!RCOR1;;chr1:38512457..38512474,-!p1@POU3F1!1.16!14.70!POU3F1;;chr6:12011943..12012015,+!p2@HIVEP1!1.15!42.56!HIVEP1;;chr1:25256756..25256774,-!p1@RUNX3!1.15!24.76!RUNX3;;chr11:129245526..129245553,+!p1@BARX2!1.15!13.15!BARX2;;chrX:106960285..106960299,-!p1@TSC22D3!1.14!339.70!TSC22D3;;chr1:91487806..91487826,-!p5@ZNF644!1.14!22.44!ZNF644;;chr10:104154246..104154347,+!p3@NFKB2!1.13!75.83!NFKB2;;chr3:5021268..5021282,+!p4@BHLHE40!1.13!25.54!BHLHE40;;chrX:56258929..56258941,+!p7@KLF8!1.13!12.38!KLF8;;chr3:63897742..63897797,+!p2@ATXN7!1.12!41.01!ATXN7;;chr19:45250948..45250998,+!p3@BCL3!1.12!30.95!BCL3;;chr7:106809470..106809481,+!p2@HBP1!1.12!17.02!HBP1;;chr5:131826457..131826514,-!p1@IRF1!1.11!458.86!IRF1;;chr1:91487774..91487802,-!p2@ZNF644!1.11!31.73!ZNF644;;chr2:157199008..157199023,-!p3@NR4A2!1.11!24.76!NR4A2;;chr17:46620898..46620927,-!p9@HOXB2!1.11!13.93!HOXB2;;chr14:35872494..35872511,-!p5@NFKBIA!1.10!15.48!NFKBIA;;chr12:52448151..52448200,+!p8@NR4A1!1.10!11.61!NR4A1;;chr14:35872542..35872553,-!p10@NFKBIA!1.10!11.61!NFKBIA;;chr17:48072574..48072597,-!p1@DLX3!1.10!11.61!DLX3;;chr8:102504979..102505010,+!p2@GRHL2!1.10!11.61!GRHL2;;chr2:68592394..68592405,+!p2@PLEK!1.10!11.61!PLEK;;chr19:12902289..12902307,+!p1@JUNB!1.09!2613.13!JUNB;;chr10:3827389..3827408,-!p1@KLF6!1.09!858.15!KLF6;;chr10:35416142..35416169,+!p3@CREM!1.09!30.18!CREM;;chrX:84498989..84499003,+!p1@ZNF711!1.09!15.48!ZNF711;;chr2:8822176..8822196,+!p1@ID2!1.08!1563.85!ID2;;chr1:156470515..156470542,-!p2@MEF2D!1.08!58.04!MEF2D;;chr1:91487836..91487854,-!p3@ZNF644!1.08!25.54!ZNF644;;chr13:41593425..41593480,-!p1@ELF1!1.07!68.87!ELF1;;chr3:37217736..37217753,-!p2@LRRFIP2!1.07!45.65!LRRFIP2;;chr12:52448420..52448460,+!p5@NR4A1!1.07!10.83!NR4A1;;chr14:75747250..75747267,+!p5@FOS!1.07!10.83!FOS;;chr6:28048343..28048354,+!p1@ZNF165!1.07!10.83!ZNF165;;chr10:64576105..64576133,-!p1@EGR2!1.06!21.67!EGR2;;chr3:150126904..150126958,+!p7@TSC22D2!1.06!18.57!TSC22D2;;chr5:43121586..43121601,+!p10@ZNF131!1.05!11.61!ZNF131;;chr6:91006518..91006570,-!p1@BACH2!1.04!23.21!BACH2;;chr11:65430535..65430549,-!p4@RELA!1.04!11.61!RELA;;chr10:135121763..135121783,+!p5@ZNF511!1.04!10.06!ZNF511;;chr7:50343634..50343717,+!p2@IKZF1!1.04!10.06!IKZF1;;chr19:45972203..45972226,+!p5@FOSB!1.04!10.06!FOSB;;chr1:201979743..201979762,+!p1@ELF3!1.04!10.06!ELF3;;chr1:25256439..25256476,-!p3@RUNX3!1.04!10.06!RUNX3;;chr1:25291461..25291472,-!p11@RUNX3!1.04!10.06!RUNX3;;chr9:139294614..139294633,-!p@chr9:139294614..139294633,-!1.03!62.68!SNAPC4;;chr7:17338324..17338341,+!p3@AHR!1.03!33.27!AHR;;chr5:43121711..43121753,+!p2@ZNF131!1.03!28.63!ZNF131;;chr12:24715376..24715432,-!p1@SOX5!1.03!12.38!SOX5;;chr11:65667846..65667868,-!p1@FOSL1!1.02!253.03!FOSL1;;chr12:48298765..48298783,-!p2@VDR!1.02!20.12!VDR;;chr7:104654718..104654741,+!p3@MLL5!1.02!13.93!MLL5;;chr3:5021113..5021180,+!p1@BHLHE40!1.01!652.32!BHLHE40;;chr22:38598086..38598105,+!p1@MAFF!1.01!99.82!MAFF;;chr17:38498594..38498661,+!p2@RARA!1.01!31.73!RARA;;chr17:40429090..40429125,-!p3@STAT5B!1.01!9.29!STAT5B;;chr12:52448213..52448262,+!p6@NR4A1!1.01!9.29!NR4A1;;chr12:72056706..72056717,+!p10@THAP2!1.01!9.29!THAP2;;chr13:41593405..41593416,-!p9@ELF1!1.01!9.29!ELF1;;chr19:45251395..45251432,+!p8@BCL3!1.01!9.29!BCL3;;chr1:209979449..209979460,-!p3@IRF6!1.01!9.29!IRF6;;chr2:10091922..10091935,+!p3@GRHL1!1.01!9.29!GRHL1;;chr2:157186630..157186686,-!p6@NR4A2!1.01!9.29!NR4A2;;chr3:169490834..169490863,+!p4@MYNN!1.01!9.29!MYNN;;chr3:189507432..189507459,+!p1@TP63!1.01!9.29!TP63;;chr4:106066730..106066754,+!p6@TET2!1.01!9.29!TET2;;chr4:83822294..83822306,+!p8@THAP9!1.01!9.29!THAP9;;chr11:13299319..13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| ||
|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000222;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000234;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000451;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000453;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000738;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000763;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000840;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000988;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000990;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0001014;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002193;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002390;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002405 | |||
|ffid_belonging_in_development=CL:0000049,CL:0000134 | |||
|fonse_cell_line= | |fonse_cell_line= | ||
|fonse_cell_line_closure= | |fonse_cell_line_closure= | ||
| Line 36: | Line 42: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/immature%2520langerhans%2520cells%252c%2520donor2.CNhs13480.11905-125F6.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/immature%2520langerhans%2520cells%252c%2520donor2.CNhs13480.11905-125F6.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/immature%2520langerhans%2520cells%252c%2520donor2.CNhs13480.11905-125F6.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/immature%2520langerhans%2520cells%252c%2520donor2.CNhs13480.11905-125F6.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/immature%2520langerhans%2520cells%252c%2520donor2.CNhs13480.11905-125F6.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:11905-125F6 | |id=FF:11905-125F6 | ||
|is_a=EFO:0002091;;FF:0011135 | |is_a=EFO:0002091;;FF:0011135 | ||
|is_obsolete= | |is_obsolete= | ||
|library_id=CNhs13480 | |||
|library_id_phase_based=2:CNhs13480 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11905 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11905 | |||
|name=immature langerhans cells, donor2 | |name=immature langerhans cells, donor2 | ||
|namespace= | |namespace= | ||
| Line 44: | Line 61: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs13480,LSID1024,release012,COMPLETED | |profile_hcage=CNhs13480,LSID1024,release012,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=,,, | |profile_srnaseq=,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
|repeat_enrich_byfamily=0,0,0,0,0,0,0,0.0885870990260118,0,0.386712890608072,0.750584609750413,0,0,0,0,0,0,0,0,0,0,0,0.406131906607941,0,0.534117635888656,0,0,0,0,0,1.05294072421208,0,0,0.879274031456327,0,0,0,0,0,0,0,0,0,0,0,0,0.534200119483689,0.751495560257985,0,0,0,0,0,0,0,0.236445952907992,0,0,0,0,0,-0.0436114919460079,0,1.4664280837426,0,0,-0.097343627213097,0,0,0,0,0,0,0,0,0,0,0.94141301182329,0,0,0.521321948041652,0,0,0,0,0,0,0,0,0,0,-0.296581042988321,0,0,0,-0.1059637768299,0.401078542966189,0.203065953303971,0,0.684981181553665,0,0.150869777874691,0.656124558264734,0,0,0,0,0,0.99500338243566,0.406131906607941,0,0,0,0,0,0,0,0,0,0,-0.096373593922461,0,0,0,0.415850286917383,0.455886343701895,0,0,0.605693066191207,0,0,0 | |||
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| |||
|rna_box=125 | |rna_box=125 | ||
|rna_catalog_number= | |rna_catalog_number= | ||
| Line 59: | Line 79: | ||
|rna_weight_ug=2.3359 | |rna_weight_ug=2.3359 | ||
|sample_age= | |sample_age= | ||
|sample_category=primary cells | |||
|sample_cell_catalog= | |sample_cell_catalog= | ||
|sample_cell_line= | |sample_cell_line= | ||
| Line 75: | Line 96: | ||
|sample_note= | |sample_note= | ||
|sample_sex= | |sample_sex= | ||
|sample_species= | |sample_species=Human (Homo sapiens) | ||
|sample_strain= | |sample_strain= | ||
|sample_tissue= | |sample_tissue= | ||
|top_motifs=ATF4:3.95509228109;CREB1:3.44622223278;ATF5_CREB3:3.41062198395;FOXN1:3.2485157992;NFKB1_REL_RELA:3.20387209803;TBX4,5:2.83983602183;PAX2:2.57572350892;JUN:2.55945164305;TLX2:2.46746446579;VSX1,2:1.91291854938;HSF1,2:1.84444684215;GLI1..3:1.81906439092;HIF1A:1.78247135509;FOS_FOS{B,L1}_JUN{B,D}:1.74831905445;TBP:1.69009481055;SP1:1.66304707109;FOSL2:1.61184093895;BACH2:1.56113142745;ZEB1:1.51524659291;POU2F1..3:1.43482783943;ATF2:1.39183317115;EGR1..3:1.35703701773;SPI1:1.32722991093;FOX{F1,F2,J1}:1.31199571964;TGIF1:1.29653960187;SPIB:1.24755712476;BPTF:1.22568198572;NFE2:1.18395986275;NFIL3:1.1691167152;MAFB:1.13543580439;FOX{D1,D2}:1.11544942238;RUNX1..3:1.05312736532;FOXQ1:0.984597814924;RFX2..5_RFXANK_RFXAP:0.917486009367;ETS1,2:0.823064678367;NANOG{mouse}:0.819731453464;NFE2L1:0.805307553375;SREBF1,2:0.767807973936;ATF6:0.73482945388;SNAI1..3:0.695866412864;EP300:0.603965931396;NANOG:0.599108111631;DMAP1_NCOR{1,2}_SMARC:0.481961868161;TP53:0.469400893014;XCPE1{core}:0.460884354354;RORA:0.417653878041;TFAP2{A,C}:0.411635034595;HMX1:0.382709071626;STAT5{A,B}:0.366550191658;IKZF1:0.343608949394;NKX2-1,4:0.307964611121;MED-1{core}:0.292508294893;FOXL1:0.282494679309;XBP1:0.262329687171;AHR_ARNT_ARNT2:0.25560407455;RFX1:0.242272563816;PITX1..3:0.228869630041;CEBPA,B_DDIT3:0.222417957745;FOXP1:0.213464986052;SRF:0.179185861715;MEF2{A,B,C,D}:0.13433626957;IRF1,2:0.123715355444;TFDP1:0.115633263464;NFE2L2:0.0958601051059;PAX4:0.0895911271672;PAX6:0.0810576069048;ZNF148:0.0702206170145;NFY{A,B,C}:0.0590877092833;ELF1,2,4:0.0150656214135;CDC5L:0.0025181913639;NFIX:-0.00145002754484;bHLH_family:-0.00228953472778;LMO2:-0.0522461350411;ESR1:-0.0563760370903;MYOD1:-0.0889885385707;FOXP3:-0.101255847834;SOX{8,9,10}:-0.119824452672;STAT1,3:-0.137434701281;POU5F1:-0.195676694509;E2F1..5:-0.221239316292;ZFP161:-0.227538195506;IRF7:-0.235964331271;POU1F1:-0.238456819154;POU6F1:-0.244612796524;NFATC1..3:-0.273402797279;MAZ:-0.278829005247;ESRRA:-0.280562092761;FOXM1:-0.288683938915;NR5A1,2:-0.303018869339;SOX2:-0.303098283757;GFI1:-0.30365872533;HLF:-0.305324267419;PAX5:-0.33530814056;CDX1,2,4:-0.338079776566;TFCP2:-0.349487303776;EN1,2:-0.354239293256;HOXA9_MEIS1:-0.368487240957;ELK1,4_GABP{A,B1}:-0.43610205506;MYB:-0.464886495144;PAX3,7:-0.469749210916;SOX17:-0.482760508569;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.497363103661;HES1:-0.508368547072;SMAD1..7,9:-0.512428531138;HIC1:-0.529227951054;ALX4:-0.534347776208;PPARG:-0.544325757231;POU3F1..4:-0.585959600244;HNF4A_NR2F1,2:-0.593190258413;MYFfamily:-0.639457973338;BREu{core}:-0.658096040518;NKX2-2,8:-0.673175501443;NKX6-1,2:-0.678031320314;MTE{core}:-0.691080280407;OCT4_SOX2{dimer}:-0.728052076882;RXRA_VDR{dimer}:-0.730308762072;GATA6:-0.740125454189;ZBTB16:-0.750333857239;STAT2,4,6:-0.756948777247;HBP1_HMGB_SSRP1_UBTF:-0.790138254811;PAX8:-0.800475079374;TFAP2B:-0.800493431172;ZBTB6:-0.809314376334;LEF1_TCF7_TCF7L1,2:-0.822279255645;HNF1A:-0.835079337744;TEAD1:-0.835391566591;GTF2A1,2:-0.846757767619;MYBL2:-0.852283850201;ZNF238:-0.860092138203;ONECUT1,2:-0.878018068128;TEF:-0.879296356306;TOPORS:-0.882142838429;NR3C1:-0.886708146214;NKX3-2:-0.890740124918;GCM1,2:-0.920716924851;ARID5B:-0.939644081698;SOX5:-0.958553624573;ZIC1..3:-0.961883156714;MZF1:-0.968679136662;NKX3-1:-0.989149178051;PDX1:-0.994780647216;IKZF2:-1.01208304909;RBPJ:-1.01233028482;AR:-1.01942322168;GTF2I:-1.04567644612;CUX2:-1.05362580696;PAX1,9:-1.06638813331;MTF1:-1.06926235675;PATZ1:-1.0806954265;HOX{A6,A7,B6,B7}:-1.08547754647;TLX1..3_NFIC{dimer}:-1.10003062063;FOXO1,3,4:-1.1043582733;PBX1:-1.13246512673;HOX{A5,B5}:-1.13980573577;LHX3,4:-1.15034319833;HOX{A4,D4}:-1.18901556303;NHLH1,2:-1.2024782326;NRF1:-1.20504991199;AIRE:-1.21227647127;TAL1_TCF{3,4,12}:-1.22601546114;EBF1:-1.23714796531;FOXA2:-1.25125710534;ZNF143:-1.25898313834;GFI1B:-1.31986710901;PRRX1,2:-1.34005306012;YY1:-1.34694819793;NKX2-3_NKX2-5:-1.42370231759;DBP:-1.43290757022;ALX1:-1.48322686087;NR6A1:-1.51396345277;FOX{I1,J2}:-1.53438691491;ZNF384:-1.53485262952;REST:-1.59114106289;SPZ1:-1.61353368106;NR1H4:-1.62057124014;TFAP4:-1.65862826008;UFEwm:-1.66780407856;RXR{A,B,G}_{NR1H2,PPAR}dimers:-1.74048253144;RREB1:-1.81134657287;CRX:-1.81181737856;ADNP_IRX_SIX_ZHX:-1.82271386171;EVI1:-1.85087036052;GZF1:-1.92532968128;FOXD3:-1.99244803221;ZNF423:-2.04031065738;HAND1,2:-2.16779547365;GATA4:-2.20944439537;KLF4:-2.2215426193;PRDM1:-2.24759169045;T:-2.75429996883;RXR{A,B,G}:-2.81274278414;HMGA1,2:-2.99370595067 | |top_motifs=ATF4:3.95509228109;CREB1:3.44622223278;ATF5_CREB3:3.41062198395;FOXN1:3.2485157992;NFKB1_REL_RELA:3.20387209803;TBX4,5:2.83983602183;PAX2:2.57572350892;JUN:2.55945164305;TLX2:2.46746446579;VSX1,2:1.91291854938;HSF1,2:1.84444684215;GLI1..3:1.81906439092;HIF1A:1.78247135509;FOS_FOS{B,L1}_JUN{B,D}:1.74831905445;TBP:1.69009481055;SP1:1.66304707109;FOSL2:1.61184093895;BACH2:1.56113142745;ZEB1:1.51524659291;POU2F1..3:1.43482783943;ATF2:1.39183317115;EGR1..3:1.35703701773;SPI1:1.32722991093;FOX{F1,F2,J1}:1.31199571964;TGIF1:1.29653960187;SPIB:1.24755712476;BPTF:1.22568198572;NFE2:1.18395986275;NFIL3:1.1691167152;MAFB:1.13543580439;FOX{D1,D2}:1.11544942238;RUNX1..3:1.05312736532;FOXQ1:0.984597814924;RFX2..5_RFXANK_RFXAP:0.917486009367;ETS1,2:0.823064678367;NANOG{mouse}:0.819731453464;NFE2L1:0.805307553375;SREBF1,2:0.767807973936;ATF6:0.73482945388;SNAI1..3:0.695866412864;EP300:0.603965931396;NANOG:0.599108111631;DMAP1_NCOR{1,2}_SMARC:0.481961868161;TP53:0.469400893014;XCPE1{core}:0.460884354354;RORA:0.417653878041;TFAP2{A,C}:0.411635034595;HMX1:0.382709071626;STAT5{A,B}:0.366550191658;IKZF1:0.343608949394;NKX2-1,4:0.307964611121;MED-1{core}:0.292508294893;FOXL1:0.282494679309;XBP1:0.262329687171;AHR_ARNT_ARNT2:0.25560407455;RFX1:0.242272563816;PITX1..3:0.228869630041;CEBPA,B_DDIT3:0.222417957745;FOXP1:0.213464986052;SRF:0.179185861715;MEF2{A,B,C,D}:0.13433626957;IRF1,2:0.123715355444;TFDP1:0.115633263464;NFE2L2:0.0958601051059;PAX4:0.0895911271672;PAX6:0.0810576069048;ZNF148:0.0702206170145;NFY{A,B,C}:0.0590877092833;ELF1,2,4:0.0150656214135;CDC5L:0.0025181913639;NFIX:-0.00145002754484;bHLH_family:-0.00228953472778;LMO2:-0.0522461350411;ESR1:-0.0563760370903;MYOD1:-0.0889885385707;FOXP3:-0.101255847834;SOX{8,9,10}:-0.119824452672;STAT1,3:-0.137434701281;POU5F1:-0.195676694509;E2F1..5:-0.221239316292;ZFP161:-0.227538195506;IRF7:-0.235964331271;POU1F1:-0.238456819154;POU6F1:-0.244612796524;NFATC1..3:-0.273402797279;MAZ:-0.278829005247;ESRRA:-0.280562092761;FOXM1:-0.288683938915;NR5A1,2:-0.303018869339;SOX2:-0.303098283757;GFI1:-0.30365872533;HLF:-0.305324267419;PAX5:-0.33530814056;CDX1,2,4:-0.338079776566;TFCP2:-0.349487303776;EN1,2:-0.354239293256;HOXA9_MEIS1:-0.368487240957;ELK1,4_GABP{A,B1}:-0.43610205506;MYB:-0.464886495144;PAX3,7:-0.469749210916;SOX17:-0.482760508569;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.497363103661;HES1:-0.508368547072;SMAD1..7,9:-0.512428531138;HIC1:-0.529227951054;ALX4:-0.534347776208;PPARG:-0.544325757231;POU3F1..4:-0.585959600244;HNF4A_NR2F1,2:-0.593190258413;MYFfamily:-0.639457973338;BREu{core}:-0.658096040518;NKX2-2,8:-0.673175501443;NKX6-1,2:-0.678031320314;MTE{core}:-0.691080280407;OCT4_SOX2{dimer}:-0.728052076882;RXRA_VDR{dimer}:-0.730308762072;GATA6:-0.740125454189;ZBTB16:-0.750333857239;STAT2,4,6:-0.756948777247;HBP1_HMGB_SSRP1_UBTF:-0.790138254811;PAX8:-0.800475079374;TFAP2B:-0.800493431172;ZBTB6:-0.809314376334;LEF1_TCF7_TCF7L1,2:-0.822279255645;HNF1A:-0.835079337744;TEAD1:-0.835391566591;GTF2A1,2:-0.846757767619;MYBL2:-0.852283850201;ZNF238:-0.860092138203;ONECUT1,2:-0.878018068128;TEF:-0.879296356306;TOPORS:-0.882142838429;NR3C1:-0.886708146214;NKX3-2:-0.890740124918;GCM1,2:-0.920716924851;ARID5B:-0.939644081698;SOX5:-0.958553624573;ZIC1..3:-0.961883156714;MZF1:-0.968679136662;NKX3-1:-0.989149178051;PDX1:-0.994780647216;IKZF2:-1.01208304909;RBPJ:-1.01233028482;AR:-1.01942322168;GTF2I:-1.04567644612;CUX2:-1.05362580696;PAX1,9:-1.06638813331;MTF1:-1.06926235675;PATZ1:-1.0806954265;HOX{A6,A7,B6,B7}:-1.08547754647;TLX1..3_NFIC{dimer}:-1.10003062063;FOXO1,3,4:-1.1043582733;PBX1:-1.13246512673;HOX{A5,B5}:-1.13980573577;LHX3,4:-1.15034319833;HOX{A4,D4}:-1.18901556303;NHLH1,2:-1.2024782326;NRF1:-1.20504991199;AIRE:-1.21227647127;TAL1_TCF{3,4,12}:-1.22601546114;EBF1:-1.23714796531;FOXA2:-1.25125710534;ZNF143:-1.25898313834;GFI1B:-1.31986710901;PRRX1,2:-1.34005306012;YY1:-1.34694819793;NKX2-3_NKX2-5:-1.42370231759;DBP:-1.43290757022;ALX1:-1.48322686087;NR6A1:-1.51396345277;FOX{I1,J2}:-1.53438691491;ZNF384:-1.53485262952;REST:-1.59114106289;SPZ1:-1.61353368106;NR1H4:-1.62057124014;TFAP4:-1.65862826008;UFEwm:-1.66780407856;RXR{A,B,G}_{NR1H2,PPAR}dimers:-1.74048253144;RREB1:-1.81134657287;CRX:-1.81181737856;ADNP_IRX_SIX_ZHX:-1.82271386171;EVI1:-1.85087036052;GZF1:-1.92532968128;FOXD3:-1.99244803221;ZNF423:-2.04031065738;HAND1,2:-2.16779547365;GATA4:-2.20944439537;KLF4:-2.2215426193;PRDM1:-2.24759169045;T:-2.75429996883;RXR{A,B,G}:-2.81274278414;HMGA1,2:-2.99370595067 | ||
|xref= | |xref= | ||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11905-125F6;search_select_hide=table117:FF:11905-125F6 | |||
}} | }} | ||
Latest revision as of 18:28, 4 June 2020
| Name: | immature langerhans cells, donor2 |
|---|---|
| Species: | Human (Homo sapiens) |
| Library ID: | CNhs13480 |
| Sample type: | primary cells |
| Genomic View: | UCSC |
| RefEX: | Specific genes |
| FANTOM CAT: | 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13 |
| CAGEd-oPOSSUM: | link |
| ZENBU report : | link |
| Additional information | ||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Sample information
RNA information
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| CAGE Accession numbers | ||||||||||||||||||||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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| Download raw sequence, BAM & CTSS | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs13480
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs13480
| Novel motif | Logo | P-value |
|---|---|---|
| 1 | 1 | 0.918 |
| 10 | 10 | 0.492 |
| 100 | 100 | 0.944 |
| 101 | 101 | 0.0877 |
| 102 | 102 | 0.425 |
| 103 | 103 | 0.757 |
| 104 | 104 | 0.838 |
| 105 | 105 | 0.213 |
| 106 | 106 | 0.00378 |
| 107 | 107 | 0.987 |
| 108 | 108 | 0.786 |
| 109 | 109 | 0.574 |
| 11 | 11 | 0.527 |
| 110 | 110 | 0.938 |
| 111 | 111 | 0.403 |
| 112 | 112 | 0.371 |
| 113 | 113 | 0.744 |
| 114 | 114 | 0.258 |
| 115 | 115 | 0.238 |
| 116 | 116 | 0.244 |
| 117 | 117 | 0.15 |
| 118 | 118 | 0.312 |
| 119 | 119 | 0.367 |
| 12 | 12 | 0.132 |
| 120 | 120 | 0.662 |
| 121 | 121 | 0.282 |
| 122 | 122 | 0.226 |
| 123 | 123 | 0.588 |
| 124 | 124 | 0.00245 |
| 125 | 125 | 0.661 |
| 126 | 126 | 0.107 |
| 127 | 127 | 0.951 |
| 128 | 128 | 0.905 |
| 129 | 129 | 0.334 |
| 13 | 13 | 0.0103 |
| 130 | 130 | 0.645 |
| 131 | 131 | 0.369 |
| 132 | 132 | 0.144 |
| 133 | 133 | 0.124 |
| 134 | 134 | 0.637 |
| 135 | 135 | 0.039 |
| 136 | 136 | 0.0349 |
| 137 | 137 | 0.139 |
| 138 | 138 | 0.499 |
| 139 | 139 | 0.416 |
| 14 | 14 | 0.89 |
| 140 | 140 | 0.723 |
| 141 | 141 | 0.838 |
| 142 | 142 | 0.99 |
| 143 | 143 | 0.339 |
| 144 | 144 | 0.257 |
| 145 | 145 | 0.303 |
| 146 | 146 | 0.751 |
| 147 | 147 | 0.278 |
| 148 | 148 | 0.302 |
| 149 | 149 | 0.182 |
| 15 | 15 | 0.827 |
| 150 | 150 | 0.657 |
| 151 | 151 | 0.684 |
| 152 | 152 | 0.0407 |
| 153 | 153 | 0.506 |
| 154 | 154 | 0.585 |
| 155 | 155 | 0.184 |
| 156 | 156 | 0.722 |
| 157 | 157 | 0.533 |
| 158 | 158 | 0.773 |
| 159 | 159 | 0.0603 |
| 16 | 16 | 0.399 |
| 160 | 160 | 0.0439 |
| 161 | 161 | 0.252 |
| 162 | 162 | 0.132 |
| 163 | 163 | 0.0497 |
| 164 | 164 | 0.178 |
| 165 | 165 | 0.201 |
| 166 | 166 | 0.273 |
| 167 | 167 | 0.301 |
| 168 | 168 | 0.163 |
| 169 | 169 | 0.937 |
| 17 | 17 | 0.636 |
| 18 | 18 | 0.363 |
| 19 | 19 | 0.0179 |
| 2 | 2 | 0.105 |
| 20 | 20 | 0.0609 |
| 21 | 21 | 0.154 |
| 22 | 22 | 0.584 |
| 23 | 23 | 0.845 |
| 24 | 24 | 0.418 |
| 25 | 25 | 0.781 |
| 26 | 26 | 0.827 |
| 27 | 27 | 0.0419 |
| 28 | 28 | 0.548 |
| 29 | 29 | 0.23 |
| 3 | 3 | 0.862 |
| 30 | 30 | 0.927 |
| 31 | 31 | 0.417 |
| 32 | 32 | 4.71566e-4 |
| 33 | 33 | 0.123 |
| 34 | 34 | 0.48 |
| 35 | 35 | 0.321 |
| 36 | 36 | 0.511 |
| 37 | 37 | 0.597 |
| 38 | 38 | 0.864 |
| 39 | 39 | 0.874 |
| 4 | 4 | 0.781 |
| 40 | 40 | 0.459 |
| 41 | 41 | 0.721 |
| 42 | 42 | 0.966 |
| 43 | 43 | 0.992 |
| 44 | 44 | 0.337 |
| 45 | 45 | 0.828 |
| 46 | 46 | 0.631 |
| 47 | 47 | 0.766 |
| 48 | 48 | 0.595 |
| 49 | 49 | 0.4 |
| 5 | 5 | 0.969 |
| 50 | 50 | 0.826 |
| 51 | 51 | 0.92 |
| 52 | 52 | 0.346 |
| 53 | 53 | 0.988 |
| 54 | 54 | 0.758 |
| 55 | 55 | 0.583 |
| 56 | 56 | 0.514 |
| 57 | 57 | 0.354 |
| 58 | 58 | 0.686 |
| 59 | 59 | 0.56 |
| 6 | 6 | 0.942 |
| 60 | 60 | 0.362 |
| 61 | 61 | 0.504 |
| 62 | 62 | 0.841 |
| 63 | 63 | 0.989 |
| 64 | 64 | 0.426 |
| 65 | 65 | 0.991 |
| 66 | 66 | 0.558 |
| 67 | 67 | 0.742 |
| 68 | 68 | 0.71 |
| 69 | 69 | 0.0773 |
| 7 | 7 | 0.689 |
| 70 | 70 | 0.587 |
| 71 | 71 | 0.594 |
| 72 | 72 | 0.182 |
| 73 | 73 | 0.0706 |
| 74 | 74 | 0.0106 |
| 75 | 75 | 0.493 |
| 76 | 76 | 0.452 |
| 77 | 77 | 0.235 |
| 78 | 78 | 0.0645 |
| 79 | 79 | 0.102 |
| 8 | 8 | 0.0945 |
| 80 | 80 | 0.927 |
| 81 | 81 | 0.434 |
| 82 | 82 | 0.128 |
| 83 | 83 | 0.689 |
| 84 | 84 | 0.0185 |
| 85 | 85 | 0.742 |
| 86 | 86 | 0.187 |
| 87 | 87 | 0.0879 |
| 88 | 88 | 0.268 |
| 89 | 89 | 0.0851 |
| 9 | 9 | 0.857 |
| 90 | 90 | 0.761 |
| 91 | 91 | 0.948 |
| 92 | 92 | 0.12 |
| 93 | 93 | 0.41 |
| 94 | 94 | 0.819 |
| 95 | 95 | 0.112 |
| 96 | 96 | 0.983 |
| 97 | 97 | 0.433 |
| 98 | 98 | 0.763 |
| 99 | 99 | 3.01782e-4 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs13480
FANTOM5 (FF) ontology
Direct parent terms
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000988 (hematopoietic cell)
0000548 (animal cell)
0002371 (somatic cell)
0000219 (motile cell)
0000738 (leukocyte)
0000990 (conventional dendritic cell)
0000255 (eukaryotic cell)
0000451 (dendritic cell)
0000453 (Langerhans cell)
0000840 (immature conventional dendritic cell)
0001014 (CD1a-positive Langerhans cell)
0001016 (immature CD1a-positive Langerhans cell)
FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0011135 (human immature langerhans cells sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000049 (common myeloid progenitor)
CL:0000134 (mesenchymal cell)
