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(Created page with "{{f5samples |id=FF:11909-125G1 |name=CD4+CD25-CD45RA- naive conventional T cells, donor3 |sample_id=11909 |rna_tube_id= |rna_box=125 |rna_position=G1 |sample_cell_lot= ...")
 
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{{f5samples
{{f5samples
|id=FF:11909-125G1
|DRA_sample_Accession=CAGE@SAMD00004886
|name=CD4+CD25-CD45RA- naive conventional T cells, donor3
|accession_numbers=CAGE;DRX008194;DRR009066;DRZ000491;DRZ001876;DRZ011841;DRZ013226
|sample_id=11909
|ancestors_in_anatomy_facet=
|rna_tube_id=
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003
|rna_box=125
|rna_position=G1
|sample_cell_lot=
|sample_cell_catalog=
|sample_company=
|rna_lot_number=39-40
|rna_catalog_number=
|sample_species=Human (Homo sapiens)
|sample_strain=
|sample_dev_stage=
|sample_tissue=blood
|sample_donor(cell lot)=
|sample_sex=male
|sample_age=23
|sample_ethnicity=
|rna_rin=
|rna_od260/230=1.61000
|rna_od260/280=2.09000
|sample_cell_type=T cell
|sample_cell_line=
|sample_collaboration=Michael Rehli (University of Regensberg)
|sample_experimental_condition=
|sample_disease=
|rna_sample_type=total RNA
|rna_extraction_protocol=OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0
|rna_weight_ug=1.14220
|rna_concentration=0.11422
|sample_note=
|profile_hcage=CNhs13539,,,LIBRARY SCHEDULED
|profile_cagescan=,,,
|profile_srnaseq=,,,
|profile_rnaseq=,,,
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000004,CL:0000012,CL:0000034,CL:0000037,CL:0000048,CL:0000051,CL:0000063,CL:0000084,CL:0000134,CL:0000144,CL:0000219,CL:0000255,CL:0000542,CL:0000548,CL:0000566,CL:0000624,CL:0000723,CL:0000738,CL:0000789,CL:0000790,CL:0000791,CL:0000805,CL:0000806,CL:0000807,CL:0000808,CL:0000809,CL:0000810,CL:0000827,CL:0000837,CL:0000838,CL:0000893,CL:0000894,CL:0000895,CL:0000898,CL:0000988,CL:0002031,CL:0002032,CL:0002087,CL:0002320,CL:0002371,CL:0002419,CL:0002420,CL:0002425,CL:0002427,CL:0002428,CL:0002429,CL:0002431,CL:0002432,CL:0002433,CL:0002436,CL:0002489
|ancestors_in_anatomy_facet=UBERON:0000061,UBERON:0000062,UBERON:0000063,UBERON:0000064,UBERON:0000065,UBERON:0000072,UBERON:0000077,UBERON:0000078,UBERON:0000119,UBERON:0000465,UBERON:0000467,UBERON:0000468,UBERON:0000475,UBERON:0000479,UBERON:0000480,UBERON:0000481,UBERON:0000483,UBERON:0000490,UBERON:0000922,UBERON:0000923,UBERON:0000924,UBERON:0000925,UBERON:0000926,UBERON:0000949,UBERON:0000974,UBERON:0001004,UBERON:0001007,UBERON:0001041,UBERON:0001042,UBERON:0001048,UBERON:0001062,UBERON:0001555,UBERON:0001557,UBERON:0002050,UBERON:0002193,UBERON:0002342,UBERON:0002346,UBERON:0002368,UBERON:0002370,UBERON:0002384,UBERON:0002390,UBERON:0002405,UBERON:0002530,UBERON:0002532,UBERON:0003075,UBERON:0003104,UBERON:0003295,UBERON:0003351,UBERON:0003408,UBERON:0003929,UBERON:0004119,UBERON:0004120,UBERON:0004121,UBERON:0004177,UBERON:0004185,UBERON:0004807,UBERON:0004921,UBERON:0005057,UBERON:0005058,UBERON:0005291,UBERON:0005423,UBERON:0005428,UBERON:0005434,UBERON:0005562,UBERON:0005911,UBERON:0006562,UBERON:0006598,UBERON:0007026,UBERON:0007284,UBERON:0007690,UBERON:0009113,UBERON:0009142,UBERON:0009145
|ancestors_in_disease_facet=
|ancestors_in_disease_facet=
|sample_description=
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000001
 
|comment=Changed from previous label. TODO: full classification
|created_by=
|creation_date=
|data_phase=2
|datafreeze_phase=2
|def=
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|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000084;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000542;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000624;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000738;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000789;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000893;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000988
|fonse_cell_line=
|fonse_cell_line=
|fonse_cell_line_closure=
|fonse_cell_line_closure=
Line 67: Line 40:
|fonse_treatment=
|fonse_treatment=
|fonse_treatment_closure=
|fonse_treatment_closure=
|has_quality=
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|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/CD4%252bCD25-CD45RA-%2520memory%2520conventional%2520T%2520cells%252c%2520donor3.CNhs13539.11909-125G1.hg19.ctss.bed.gz
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/CD4%252bCD25-CD45RA-%2520memory%2520conventional%2520T%2520cells%252c%2520donor3.CNhs13539.11909-125G1.hg19.nobarcode.rdna.fa.gz
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/CD4%252bCD25-CD45RA-%2520memory%2520conventional%2520T%2520cells%252c%2520donor3.CNhs13539.11909-125G1.hg38.nobarcode.bam
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/CD4%252bCD25-CD45RA-%2520memory%2520conventional%2520T%2520cells%252c%2520donor3.CNhs13539.11909-125G1.hg38.nobarcode.ctss.bed.gz
|id=FF:11909-125G1
|is_a=EFO:0002091;;FF:0000002;;FF:0000210
|is_obsolete=
|library_id=CNhs13539
|library_id_phase_based=2:CNhs13539
|microRNAs=
|microRNAs_nn=
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11909
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11909
|name=CD4+CD25-CD45RA- memory conventional T cells, donor3
|namespace=
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|profile_cagescan=,,,
|profile_hcage=CNhs13539,LSID1029,release012,COMPLETED
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|rna_box=125
|rna_catalog_number=
|rna_concentration=0.11422
|rna_extraction_protocol=OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0
|rna_lot_number=39-40
|rna_od260/230=1.61
|rna_od260/280=2.09
|rna_position=G1
|rna_rin=
|rna_sample_type=total RNA
|rna_tube_id=125G1
|rna_weight_ug=1.1422
|sample_age=23
|sample_category=primary cells
|sample_cell_catalog=
|sample_cell_line=
|sample_cell_lot=
|sample_cell_type=T cell
|sample_collaboration=Michael Rehli (University of Regensberg)
|sample_company=
|sample_description=
|sample_dev_stage=
|sample_disease=
|sample_donor(cell lot)=
|sample_ethnicity=
|sample_experimental_condition=
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;1.33400899740963e-233!GO:0043227;membrane-bound organelle;4.2033419223237e-202!GO:0043231;intracellular membrane-bound organelle;9.63565849670759e-202!GO:0043226;organelle;2.12031314897486e-192!GO:0043229;intracellular organelle;1.07911674408436e-191!GO:0005737;cytoplasm;9.50691909294256e-129!GO:0005634;nucleus;7.08449222391474e-118!GO:0044422;organelle part;3.01572670065164e-116!GO:0044446;intracellular organelle part;9.7775524793744e-115!GO:0043170;macromolecule metabolic process;1.69692785820334e-104!GO:0044237;cellular metabolic process;2.69658353516111e-98!GO:0044238;primary metabolic process;8.15846080227631e-96!GO:0032991;macromolecular complex;9.75059689718615e-94!GO:0030529;ribonucleoprotein complex;5.99924504592141e-86!GO:0003723;RNA binding;5.99924504592141e-86!GO:0044428;nuclear part;2.8046847483449e-85!GO:0044444;cytoplasmic part;2.36876933113867e-83!GO:0043283;biopolymer metabolic process;1.92000930149579e-75!GO:0043233;organelle lumen;6.08047393496617e-70!GO:0031974;membrane-enclosed lumen;6.08047393496617e-70!GO:0010467;gene expression;8.96540315760224e-68!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;3.9966733907976e-63!GO:0006396;RNA processing;4.28360710271884e-58!GO:0005515;protein binding;1.32619317833331e-55!GO:0031981;nuclear lumen;2.27895178523701e-53!GO:0003676;nucleic acid binding;1.36875198617203e-50!GO:0006412;translation;2.31310162889407e-50!GO:0033036;macromolecule localization;4.97953050449658e-50!GO:0016071;mRNA metabolic process;1.9899428436261e-49!GO:0019538;protein metabolic process;7.04565297794667e-48!GO:0015031;protein transport;5.84878183698342e-47!GO:0005739;mitochondrion;3.49380959532721e-46!GO:0008104;protein localization;1.14153635008321e-45!GO:0043234;protein complex;2.56696432139954e-45!GO:0044267;cellular protein metabolic process;2.80773141800758e-45!GO:0045184;establishment of protein localization;3.06732812707286e-45!GO:0005840;ribosome;9.38158684970387e-45!GO:0044260;cellular macromolecule metabolic process;1.92477091552383e-44!GO:0008380;RNA splicing;2.27454552762499e-43!GO:0006397;mRNA processing;1.14683621700013e-42!GO:0003735;structural constituent of ribosome;3.02643931649193e-39!GO:0016070;RNA metabolic process;4.22340209026301e-39!GO:0009059;macromolecule biosynthetic process;3.740156986145e-37!GO:0006259;DNA metabolic process;1.2002974791503e-35!GO:0031967;organelle envelope;1.6866991047124e-34!GO:0033279;ribosomal subunit;1.73576235563829e-34!GO:0046907;intracellular transport;2.81567947678629e-34!GO:0031090;organelle membrane;3.27038777944134e-34!GO:0031975;envelope;3.44063529252883e-34!GO:0005654;nucleoplasm;6.72843580076084e-34!GO:0044429;mitochondrial part;2.88991830695529e-33!GO:0006886;intracellular protein transport;2.88991830695529e-33!GO:0005829;cytosol;7.18872221747709e-33!GO:0016043;cellular component organization and biogenesis;2.58599779767072e-32!GO:0005681;spliceosome;5.78428490658495e-32!GO:0022613;ribonucleoprotein complex biogenesis and assembly;7.09923792920654e-32!GO:0065003;macromolecular complex assembly;8.90890279556804e-31!GO:0005830;cytosolic ribosome (sensu Eukaryota);3.10560596047064e-29!GO:0000166;nucleotide binding;1.45336644360689e-28!GO:0022607;cellular component assembly;2.59838807952647e-27!GO:0044451;nucleoplasm part;6.15190230788749e-27!GO:0044249;cellular biosynthetic process;4.19248928661369e-26!GO:0006996;organelle organization and biogenesis;1.65390133648343e-25!GO:0044445;cytosolic part;1.84724388367694e-25!GO:0009058;biosynthetic process;3.24015779866563e-25!GO:0006512;ubiquitin cycle;1.70087445679893e-24!GO:0051641;cellular localization;3.58451668509659e-24!GO:0051649;establishment of cellular localization;5.84301118074813e-24!GO:0043228;non-membrane-bound organelle;1.48739187591386e-21!GO:0043232;intracellular non-membrane-bound organelle;1.48739187591386e-21!GO:0005740;mitochondrial envelope;2.73751486130048e-21!GO:0022618;protein-RNA complex assembly;3.03108262305413e-21!GO:0031966;mitochondrial membrane;9.25732938514032e-21!GO:0016874;ligase activity;3.45251315962818e-20!GO:0019866;organelle inner membrane;4.20111491488581e-20!GO:0005730;nucleolus;4.20111491488581e-20!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;4.67596030846529e-20!GO:0016817;hydrolase activity, acting on acid anhydrides;5.74170397906875e-20!GO:0016462;pyrophosphatase activity;6.23533405762537e-20!GO:0017111;nucleoside-triphosphatase activity;7.16808505291616e-20!GO:0032553;ribonucleotide binding;1.00555756988339e-19!GO:0032555;purine ribonucleotide binding;1.00555756988339e-19!GO:0043412;biopolymer modification;3.16040584909234e-19!GO:0012501;programmed cell death;5.88120602746289e-19!GO:0017076;purine nucleotide binding;6.84185068455688e-19!GO:0006915;apoptosis;7.23363672133835e-19!GO:0006974;response to DNA damage stimulus;8.95024694646576e-19!GO:0016604;nuclear body;8.95024694646576e-19!GO:0006605;protein targeting;1.21779546736535e-18!GO:0008219;cell death;2.72094204048401e-18!GO:0016265;death;2.72094204048401e-18!GO:0005743;mitochondrial inner membrane;4.21628635833684e-18!GO:0051603;proteolysis involved in cellular protein catabolic process;4.83611149327722e-18!GO:0051276;chromosome organization and biogenesis;4.94022830624301e-18!GO:0015935;small ribosomal subunit;4.96877974934411e-18!GO:0019941;modification-dependent protein catabolic process;5.0333574342089e-18!GO:0043632;modification-dependent macromolecule catabolic process;5.0333574342089e-18!GO:0044265;cellular macromolecule catabolic process;5.3103520554819e-18!GO:0006511;ubiquitin-dependent protein catabolic process;7.31181347623287e-18!GO:0006119;oxidative phosphorylation;1.34089962079273e-17!GO:0044257;cellular protein catabolic process;1.40099116308677e-17!GO:0006325;establishment and/or maintenance of chromatin architecture;1.4676157113892e-17!GO:0008135;translation factor activity, nucleic acid binding;1.47389658719016e-17!GO:0015934;large ribosomal subunit;2.81523229308047e-17!GO:0006913;nucleocytoplasmic transport;3.20408665232869e-17!GO:0051169;nuclear transport;5.71183466508916e-17!GO:0008134;transcription factor binding;5.71514556992882e-17!GO:0006323;DNA packaging;7.27233860524515e-17!GO:0006464;protein modification process;1.06916955924333e-16!GO:0006281;DNA repair;1.08989868182666e-16!GO:0005524;ATP binding;1.37574635000764e-16!GO:0043285;biopolymer catabolic process;1.81802516282065e-16!GO:0032559;adenyl ribonucleotide binding;3.65174712013639e-16!GO:0043687;post-translational protein modification;7.06478653076228e-16!GO:0016607;nuclear speck;7.4922380921703e-16!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);1.19372252480888e-15!GO:0050794;regulation of cellular process;1.37007013974863e-15!GO:0044455;mitochondrial membrane part;1.50951446360242e-15!GO:0006457;protein folding;2.03117399325988e-15!GO:0030554;adenyl nucleotide binding;3.0586051956305e-15!GO:0000398;nuclear mRNA splicing, via spliceosome;4.59696532171831e-15!GO:0000375;RNA splicing, via transesterification reactions;4.59696532171831e-15!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;4.59696532171831e-15!GO:0031980;mitochondrial lumen;5.91789454892525e-15!GO:0005759;mitochondrial matrix;5.91789454892525e-15!GO:0042623;ATPase activity, coupled;5.91789454892525e-15!GO:0016887;ATPase activity;6.30302838020371e-15!GO:0004386;helicase activity;1.13977692267195e-14!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);1.77436160888805e-14!GO:0007049;cell cycle;1.83602896160394e-14!GO:0000502;proteasome complex (sensu Eukaryota);3.06347680078895e-14!GO:0019222;regulation of metabolic process;4.54512108082812e-14!GO:0005635;nuclear envelope;5.44868443401525e-14!GO:0009057;macromolecule catabolic process;5.60183560353492e-14!GO:0005694;chromosome;7.56699367128414e-14!GO:0006413;translational initiation;8.39766793892669e-14!GO:0003743;translation initiation factor activity;1.12956004424351e-13!GO:0031965;nuclear membrane;2.89345225225272e-13!GO:0042981;regulation of apoptosis;3.11445254749367e-13!GO:0012505;endomembrane system;3.34023581708544e-13!GO:0043067;regulation of programmed cell death;4.9261153431982e-13!GO:0030163;protein catabolic process;5.60422429362538e-13!GO:0044453;nuclear membrane part;1.19887665474825e-12!GO:0005746;mitochondrial respiratory chain;1.62887741458247e-12!GO:0008026;ATP-dependent helicase activity;1.99657991178336e-12!GO:0016568;chromatin modification;3.18603292947486e-12!GO:0017038;protein import;3.5830204024219e-12!GO:0031323;regulation of cellular metabolic process;4.83178349778001e-12!GO:0006333;chromatin assembly or disassembly;9.41433367192356e-12!GO:0050136;NADH dehydrogenase (quinone) activity;9.41433367192356e-12!GO:0003954;NADH dehydrogenase activity;9.41433367192356e-12!GO:0008137;NADH dehydrogenase (ubiquinone) activity;9.41433367192356e-12!GO:0042254;ribosome biogenesis and assembly;1.29252348029559e-11!GO:0044427;chromosomal part;1.39514115402964e-11!GO:0050657;nucleic acid transport;1.45668043763322e-11!GO:0051236;establishment of RNA localization;1.45668043763322e-11!GO:0050658;RNA transport;1.45668043763322e-11!GO:0009719;response to endogenous stimulus;1.47327166033306e-11!GO:0006403;RNA localization;1.66795740480213e-11!GO:0006446;regulation of translational initiation;2.27525213664711e-11!GO:0006350;transcription;2.29992229687896e-11!GO:0065004;protein-DNA complex assembly;2.50041866436893e-11!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;2.67089373882092e-11!GO:0051082;unfolded protein binding;3.69585323919371e-11!GO:0003712;transcription cofactor activity;3.8227356578306e-11!GO:0005643;nuclear pore;5.23038623758864e-11!GO:0022402;cell cycle process;6.75301244338972e-11!GO:0048770;pigment granule;7.4145095573933e-11!GO:0042470;melanosome;7.4145095573933e-11!GO:0048193;Golgi vesicle transport;8.4141239521929e-11!GO:0044248;cellular catabolic process;8.76040597687974e-11!GO:0008270;zinc ion binding;1.04475188159078e-10!GO:0008639;small protein conjugating enzyme activity;1.40836673170504e-10!GO:0042775;organelle ATP synthesis coupled electron transport;1.92996424956634e-10!GO:0042773;ATP synthesis coupled electron transport;1.92996424956634e-10!GO:0004842;ubiquitin-protein ligase activity;2.08753913794844e-10!GO:0019787;small conjugating protein ligase activity;2.64905963645107e-10!GO:0010468;regulation of gene expression;3.15064479237366e-10!GO:0050789;regulation of biological process;3.86751206783044e-10!GO:0043566;structure-specific DNA binding;4.09880586177674e-10!GO:0030964;NADH dehydrogenase complex (quinone);4.47282655134745e-10!GO:0045271;respiratory chain complex I;4.47282655134745e-10!GO:0005747;mitochondrial respiratory chain complex I;4.47282655134745e-10!GO:0051028;mRNA transport;9.32265282691826e-10!GO:0051726;regulation of cell cycle;1.01477028964282e-09!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;1.01533104997321e-09!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;1.0401431745121e-09!GO:0000074;regulation of progression through cell cycle;1.58311922113596e-09!GO:0019219;regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;1.62155165345044e-09!GO:0005761;mitochondrial ribosome;1.63862499867148e-09!GO:0000313;organellar ribosome;1.63862499867148e-09!GO:0000785;chromatin;1.72149129143552e-09!GO:0051170;nuclear import;2.5107005560008e-09!GO:0008565;protein transporter activity;2.51958465053225e-09!GO:0016879;ligase activity, forming carbon-nitrogen bonds;3.19709759282853e-09!GO:0006399;tRNA metabolic process;3.52508378373354e-09!GO:0006606;protein import into nucleus;4.46840797658159e-09!GO:0007243;protein kinase cascade;4.63949274733101e-09!GO:0005794;Golgi apparatus;6.06103347699448e-09!GO:0032774;RNA biosynthetic process;6.07264312098042e-09!GO:0046930;pore complex;7.88637008848523e-09!GO:0006351;transcription, DNA-dependent;8.08300721233017e-09!GO:0006793;phosphorus metabolic process;8.95729980455287e-09!GO:0006796;phosphate metabolic process;8.95729980455287e-09!GO:0003697;single-stranded DNA binding;9.27339457528189e-09!GO:0065002;intracellular protein transport across a membrane;1.05908708740366e-08!GO:0003713;transcription coactivator activity;1.0621326343712e-08!GO:0007249;I-kappaB kinase/NF-kappaB cascade;1.46537117942576e-08!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;1.51473675720982e-08!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;1.54149717138499e-08!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;1.93581671746597e-08!GO:0019829;cation-transporting ATPase activity;1.98464606328989e-08!GO:0051186;cofactor metabolic process;2.10830606207419e-08!GO:0016881;acid-amino acid ligase activity;2.69524375645875e-08!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;2.76688558851284e-08!GO:0030532;small nuclear ribonucleoprotein complex;2.99134272554201e-08!GO:0016192;vesicle-mediated transport;3.04009604174447e-08!GO:0006366;transcription from RNA polymerase II promoter;3.82410997831345e-08!GO:0045449;regulation of transcription;4.22363376493034e-08!GO:0016072;rRNA metabolic process;4.81867955265137e-08!GO:0006364;rRNA processing;5.95333597311062e-08!GO:0016787;hydrolase activity;6.28252608666407e-08!GO:0009259;ribonucleotide metabolic process;8.27027005062814e-08!GO:0016563;transcription activator activity;8.81961810443901e-08!GO:0006334;nucleosome assembly;1.1189347861679e-07!GO:0031497;chromatin assembly;1.13900784316901e-07!GO:0048523;negative regulation of cellular process;1.32637958162503e-07!GO:0016310;phosphorylation;1.35030535311754e-07!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;1.3533305659542e-07!GO:0005768;endosome;1.53658772747815e-07!GO:0032446;protein modification by small protein conjugation;1.56042444540965e-07!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;1.75333786232149e-07!GO:0009260;ribonucleotide biosynthetic process;1.96311407857325e-07!GO:0006260;DNA replication;2.14104965688157e-07!GO:0003677;DNA binding;2.40110793654989e-07!GO:0005839;proteasome core complex (sensu Eukaryota);2.64620334992828e-07!GO:0046914;transition metal ion binding;2.70205243909989e-07!GO:0006164;purine nucleotide biosynthetic process;2.79147138694107e-07!GO:0051246;regulation of protein metabolic process;3.06463154525588e-07!GO:0006916;anti-apoptosis;3.47681982823736e-07!GO:0006163;purine nucleotide metabolic process;4.03396160403226e-07!GO:0016567;protein ubiquitination;4.67236701325171e-07!GO:0006355;regulation of transcription, DNA-dependent;4.70014055701507e-07!GO:0000245;spliceosome assembly;4.75779831809549e-07!GO:0051168;nuclear export;5.01039096863933e-07!GO:0009060;aerobic respiration;5.04247776928509e-07!GO:0016779;nucleotidyltransferase activity;5.62947705434266e-07!GO:0004298;threonine endopeptidase activity;5.95228746660587e-07!GO:0009152;purine ribonucleotide biosynthetic process;5.96299709148792e-07!GO:0031202;RNA splicing factor activity, transesterification mechanism;6.89115596763263e-07!GO:0003724;RNA helicase activity;6.99997235501308e-07!GO:0009150;purine ribonucleotide metabolic process;8.96796549513419e-07!GO:0006732;coenzyme metabolic process;9.12900841509668e-07!GO:0043069;negative regulation of programmed cell death;9.19338049079469e-07!GO:0000151;ubiquitin ligase complex;9.23175341640701e-07!GO:0015986;ATP synthesis coupled proton transport;9.52988086852504e-07!GO:0015985;energy coupled proton transport, down electrochemical gradient;9.52988086852504e-07!GO:0065009;regulation of a molecular function;1.01202883648762e-06!GO:0031324;negative regulation of cellular metabolic process;1.02662752979542e-06!GO:0016363;nuclear matrix;1.03630058620082e-06!GO:0006888;ER to Golgi vesicle-mediated transport;1.17589681840759e-06!GO:0044432;endoplasmic reticulum part;1.25782631884436e-06!GO:0043066;negative regulation of apoptosis;1.30225696759957e-06!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;1.3460858236624e-06!GO:0004812;aminoacyl-tRNA ligase activity;1.3460858236624e-06!GO:0016875;ligase activity, forming carbon-oxygen bonds;1.3460858236624e-06!GO:0016740;transferase activity;2.0266742054256e-06!GO:0015078;hydrogen ion transmembrane transporter activity;2.11978599143545e-06!GO:0043038;amino acid activation;2.22374524181807e-06!GO:0006418;tRNA aminoacylation for protein translation;2.22374524181807e-06!GO:0043039;tRNA aminoacylation;2.22374524181807e-06!GO:0065007;biological regulation;2.30628907219856e-06!GO:0016564;transcription repressor activity;2.33937565711236e-06!GO:0019899;enzyme binding;2.73516098419093e-06!GO:0045786;negative regulation of progression through cell cycle;2.81253826999019e-06!GO:0009615;response to virus;3.4770721952773e-06!GO:0045333;cellular respiration;3.63718106102551e-06!GO:0016772;transferase activity, transferring phosphorus-containing groups;4.23991493204016e-06!GO:0048519;negative regulation of biological process;4.36383164887723e-06!GO:0006310;DNA recombination;4.68108934624887e-06!GO:0006917;induction of apoptosis;4.87854801655561e-06!GO:0000278;mitotic cell cycle;4.91125927471e-06!GO:0005813;centrosome;5.19843456621508e-06!GO:0043065;positive regulation of apoptosis;5.19843456621508e-06!GO:0048475;coated membrane;5.63786461282081e-06!GO:0030117;membrane coat;5.63786461282081e-06!GO:0006461;protein complex assembly;6.04068165336892e-06!GO:0006754;ATP biosynthetic process;6.67592908507939e-06!GO:0006753;nucleoside phosphate metabolic process;6.67592908507939e-06!GO:0005783;endoplasmic reticulum;6.97043228919171e-06!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;7.4665370061674e-06!GO:0012502;induction of programmed cell death;7.54912236819464e-06!GO:0016469;proton-transporting two-sector ATPase complex;7.55339989157296e-06!GO:0043068;positive regulation of programmed cell death;7.59337677112612e-06!GO:0042175;nuclear envelope-endoplasmic reticulum network;7.61621103352674e-06!GO:0006401;RNA catabolic process;8.58957452955527e-06!GO:0009892;negative regulation of metabolic process;8.67455344430934e-06!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;8.98911183244602e-06!GO:0015399;primary active transmembrane transporter activity;8.98911183244602e-06!GO:0006613;cotranslational protein targeting to membrane;9.1079210492944e-06!GO:0007242;intracellular signaling cascade;1.06325252888844e-05!GO:0003690;double-stranded DNA binding;1.09018138753435e-05!GO:0030120;vesicle coat;1.19907080817045e-05!GO:0030662;coated vesicle membrane;1.19907080817045e-05!GO:0005789;endoplasmic reticulum membrane;1.30431717529335e-05!GO:0009142;nucleoside triphosphate biosynthetic process;1.70400965145102e-05!GO:0009201;ribonucleoside triphosphate biosynthetic process;1.70400965145102e-05!GO:0045259;proton-transporting ATP synthase complex;1.70852952865127e-05!GO:0005815;microtubule organizing center;1.7723127080668e-05!GO:0009056;catabolic process;1.79241769489358e-05!GO:0046034;ATP metabolic process;1.8025449249972e-05!GO:0006402;mRNA catabolic process;2.09701824376017e-05!GO:0006099;tricarboxylic acid cycle;2.10349747054254e-05!GO:0046356;acetyl-CoA catabolic process;2.10349747054254e-05!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;2.35389516500789e-05!GO:0009145;purine nucleoside triphosphate biosynthetic process;2.35389516500789e-05!GO:0051188;cofactor biosynthetic process;2.37324125395255e-05!GO:0008234;cysteine-type peptidase activity;2.43057109516592e-05!GO:0005525;GTP binding;2.45728532879824e-05!GO:0008186;RNA-dependent ATPase activity;2.46285775994881e-05!GO:0016481;negative regulation of transcription;2.5396953979969e-05!GO:0009199;ribonucleoside triphosphate metabolic process;2.72178078332439e-05!GO:0009141;nucleoside triphosphate metabolic process;3.59189940455964e-05!GO:0009205;purine ribonucleoside triphosphate metabolic process;3.71765149146991e-05!GO:0009144;purine nucleoside triphosphate metabolic process;3.71765149146991e-05!GO:0006084;acetyl-CoA metabolic process;4.93459233924838e-05!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;5.57386333559895e-05!GO:0004674;protein serine/threonine kinase activity;6.30190424951334e-05!GO:0009055;electron carrier activity;6.77920659746835e-05!GO:0015077;monovalent inorganic cation transmembrane transporter activity;7.04984200996522e-05!GO:0006612;protein targeting to membrane;7.4851140138817e-05!GO:0006417;regulation of translation;7.57881279134923e-05!GO:0007005;mitochondrion organization and biogenesis;7.89082624598832e-05!GO:0005793;ER-Golgi intermediate compartment;8.14348249928085e-05!GO:0004004;ATP-dependent RNA helicase activity;8.15579965169871e-05!GO:0043623;cellular protein complex assembly;9.8552759095293e-05!GO:0003924;GTPase activity;0.000100011353163854!GO:0016251;general RNA polymerase II transcription factor activity;0.000100895939936281!GO:0005852;eukaryotic translation initiation factor 3 complex;0.000105958860382443!GO:0009108;coenzyme biosynthetic process;0.000117550890127746!GO:0005667;transcription factor complex;0.000121384833156477!GO:0008632;apoptotic program;0.000153746361903112!GO:0009109;coenzyme catabolic process;0.000156777330804682!GO:0043492;ATPase activity, coupled to movement of substances;0.000157510701453947!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.000177002002053899!GO:0003729;mRNA binding;0.000187549012263908!GO:0006352;transcription initiation;0.000197596528794561!GO:0051187;cofactor catabolic process;0.000204585568319213!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.000218832845589718!GO:0003899;DNA-directed RNA polymerase activity;0.000233245761254635!GO:0005885;Arp2/3 protein complex;0.00023375330915045!GO:0051427;hormone receptor binding;0.000237633792144263!GO:0006752;group transfer coenzyme metabolic process;0.000241149807002789!GO:0030384;phosphoinositide metabolic process;0.000242778340313051!GO:0031326;regulation of cellular biosynthetic process;0.000255074712136873!GO:0043021;ribonucleoprotein binding;0.000267969921405867!GO:0044440;endosomal part;0.000272420164050632!GO:0010008;endosome membrane;0.000272420164050632!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.000287805011312199!GO:0005769;early endosome;0.000305169286338626!GO:0006261;DNA-dependent DNA replication;0.000305169286338626!GO:0044431;Golgi apparatus part;0.000306198997015248!GO:0006891;intra-Golgi vesicle-mediated transport;0.000358697520202483!GO:0032561;guanyl ribonucleotide binding;0.000365684500321885!GO:0019001;guanyl nucleotide binding;0.000365684500321885!GO:0000786;nucleosome;0.00036881964626045!GO:0015630;microtubule cytoskeleton;0.000402033276774803!GO:0000087;M phase of mitotic cell cycle;0.000422252969103015!GO:0050790;regulation of catalytic activity;0.000440821760959171!GO:0035257;nuclear hormone receptor binding;0.00044688234962163!GO:0022403;cell cycle phase;0.000450921345539015!GO:0060090;molecular adaptor activity;0.000452150875949884!GO:0005770;late endosome;0.000469412785336645!GO:0019783;small conjugating protein-specific protease activity;0.000484405266442454!GO:0051301;cell division;0.000502291049769542!GO:0006611;protein export from nucleus;0.00060921495200042!GO:0008033;tRNA processing;0.000616109198513506!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.000635759553250859!GO:0006383;transcription from RNA polymerase III promoter;0.000658035836223852!GO:0004843;ubiquitin-specific protease activity;0.000671979896344675!GO:0009967;positive regulation of signal transduction;0.000671979896344675!GO:0008654;phospholipid biosynthetic process;0.000687516175761898!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;0.000697163628978316!GO:0048471;perinuclear region of cytoplasm;0.000698888771321981!GO:0007067;mitosis;0.000704743643136872!GO:0005798;Golgi-associated vesicle;0.00073214487483533!GO:0006607;NLS-bearing substrate import into nucleus;0.000750186562439175!GO:0048522;positive regulation of cellular process;0.000775772523916436!GO:0046489;phosphoinositide biosynthetic process;0.000881172389497828!GO:0016197;endosome transport;0.000918304300673664!GO:0003714;transcription corepressor activity;0.000925391654503384!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.000965596642135702!GO:0006357;regulation of transcription from RNA polymerase II promoter;0.00106971248009219!GO:0004221;ubiquitin thiolesterase activity;0.00111668755792142!GO:0006302;double-strand break repair;0.00129456501593562!GO:0006650;glycerophospholipid metabolic process;0.00129515202956325!GO:0051252;regulation of RNA metabolic process;0.0013076576367762!GO:0031072;heat shock protein binding;0.00132354610839168!GO:0006405;RNA export from nucleus;0.0015619858254399!GO:0051251;positive regulation of lymphocyte activation;0.00162874672013349!GO:0008047;enzyme activator activity;0.0017030860466268!GO:0005773;vacuole;0.0017030860466268!GO:0044452;nucleolar part;0.00173043667896847!GO:0005762;mitochondrial large ribosomal subunit;0.00177031873748233!GO:0000315;organellar large ribosomal subunit;0.00177031873748233!GO:0009889;regulation of biosynthetic process;0.00178132523302253!GO:0048500;signal recognition particle;0.00178974884656655!GO:0003678;DNA helicase activity;0.00180434844349036!GO:0008168;methyltransferase activity;0.00193111802095244!GO:0006414;translational elongation;0.00213584954125455!GO:0016741;transferase activity, transferring one-carbon groups;0.00220499754301326!GO:0019843;rRNA binding;0.00225988615332855!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.00229907714635469!GO:0045892;negative regulation of transcription, DNA-dependent;0.0023267710646399!GO:0007264;small GTPase mediated signal transduction;0.00261543324473287!GO:0008312;7S RNA binding;0.00263217645298453!GO:0030518;steroid hormone receptor signaling pathway;0.00271147426115014!GO:0015992;proton transport;0.00280546071201153!GO:0006818;hydrogen transport;0.00281291531516611!GO:0004518;nuclease activity;0.00286254950227802!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;0.00293403871433979!GO:0000184;mRNA catabolic process, nonsense-mediated decay;0.00294910620092452!GO:0007265;Ras protein signal transduction;0.00297218659936701!GO:0032259;methylation;0.00303620525238242!GO:0047485;protein N-terminus binding;0.00309105659074486!GO:0042110;T cell activation;0.00310141124139536!GO:0005684;U2-dependent spliceosome;0.00318693744339366!GO:0043681;protein import into mitochondrion;0.00322108778778781!GO:0019867;outer membrane;0.00322108778778781!GO:0043414;biopolymer methylation;0.00330656645064998!GO:0051087;chaperone binding;0.00330656645064998!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.00335778693147783!GO:0045047;protein targeting to ER;0.00335778693147783!GO:0030695;GTPase regulator activity;0.00343038201261119!GO:0051789;response to protein stimulus;0.00343038201261119!GO:0006986;response to unfolded protein;0.00343038201261119!GO:0005657;replication fork;0.00343038201261119!GO:0003725;double-stranded RNA binding;0.00345051669595684!GO:0046474;glycerophospholipid biosynthetic process;0.00349087742959326!GO:0004527;exonuclease activity;0.00362281189482097!GO:0003746;translation elongation factor activity;0.00364324311697527!GO:0003684;damaged DNA binding;0.00365088070620466!GO:0000323;lytic vacuole;0.00369273895542736!GO:0005764;lysosome;0.00369273895542736!GO:0015631;tubulin binding;0.00386888322861782!GO:0016859;cis-trans isomerase activity;0.00391014840291543!GO:0000209;protein polyubiquitination;0.00392114611583829!GO:0031968;organelle outer membrane;0.00394472521474321!GO:0000139;Golgi membrane;0.00406289677162176!GO:0022415;viral reproductive process;0.00406289677162176!GO:0003711;transcription elongation regulator activity;0.00409754178121855!GO:0006367;transcription initiation from RNA polymerase II promoter;0.00417214832300275!GO:0005637;nuclear inner membrane;0.00421375590968697!GO:0042802;identical protein binding;0.00440221461757651!GO:0006338;chromatin remodeling;0.00446848532395076!GO:0001772;immunological synapse;0.00448378147528022!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00449359001706908!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00449359001706908!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00449359001706908!GO:0030118;clathrin coat;0.00464734720881662!GO:0030658;transport vesicle membrane;0.0046607811612605!GO:0042101;T cell receptor complex;0.0046607811612605!GO:0006289;nucleotide-excision repair;0.0046607811612605!GO:0016584;nucleosome positioning;0.0046990607473845!GO:0000314;organellar small ribosomal subunit;0.00481167097879243!GO:0005763;mitochondrial small ribosomal subunit;0.00481167097879243!GO:0005741;mitochondrial outer membrane;0.00482239599974332!GO:0030521;androgen receptor signaling pathway;0.00485143436877462!GO:0008022;protein C-terminus binding;0.00500449555356377!GO:0005669;transcription factor TFIID complex;0.00502773472657433!GO:0002474;antigen processing and presentation of peptide antigen via MHC class I;0.00522220886337832!GO:0031625;ubiquitin protein ligase binding;0.00524587612793428!GO:0043488;regulation of mRNA stability;0.00531056800961274!GO:0043487;regulation of RNA stability;0.00531056800961274!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.00532436167558722!GO:0009117;nucleotide metabolic process;0.0057020732370178!GO:0003682;chromatin binding;0.00580182056047858!GO:0016790;thiolester hydrolase activity;0.00590901888169813!GO:0000279;M phase;0.00634368737337091!GO:0016281;eukaryotic translation initiation factor 4F complex;0.0070514918992112!GO:0031252;leading edge;0.00719510876891158!GO:0046822;regulation of nucleocytoplasmic transport;0.00732017826439371!GO:0008017;microtubule binding;0.00774769266888843!GO:0007050;cell cycle arrest;0.00776398257093844!GO:0051336;regulation of hydrolase activity;0.00797225350573838!GO:0006376;mRNA splice site selection;0.00817233118316837!GO:0000389;nuclear mRNA 3'-splice site recognition;0.00817233118316837!GO:0005083;small GTPase regulator activity;0.00837832354707168!GO:0030522;intracellular receptor-mediated signaling pathway;0.00841972062065146!GO:0005048;signal sequence binding;0.00848684061354102!GO:0000049;tRNA binding;0.0085094319098718!GO:0051092;activation of NF-kappaB transcription factor;0.00852185724329379!GO:0046966;thyroid hormone receptor binding;0.00866299532606355!GO:0040029;regulation of gene expression, epigenetic;0.0088052148676579!GO:0005070;SH3/SH2 adaptor activity;0.00905258078716392!GO:0046649;lymphocyte activation;0.00916552134734458!GO:0005819;spindle;0.0096140538438136!GO:0000776;kinetochore;0.0096140538438136!GO:0043087;regulation of GTPase activity;0.00966114614806505!GO:0051539;4 iron, 4 sulfur cluster binding;0.00966114614806505!GO:0007034;vacuolar transport;0.00966114614806505!GO:0004177;aminopeptidase activity;0.0104935099215278!GO:0007006;mitochondrial membrane organization and biogenesis;0.0107998417983311!GO:0009966;regulation of signal transduction;0.0111759863629748!GO:0030660;Golgi-associated vesicle membrane;0.0111938804411265!GO:0032200;telomere organization and biogenesis;0.011421144982821!GO:0000723;telomere maintenance;0.011421144982821!GO:0030258;lipid modification;0.0116514954142415!GO:0004437;inositol or phosphatidylinositol phosphatase activity;0.0118616559511254!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.0121342484490224!GO:0016853;isomerase activity;0.0125284299348013!GO:0051090;regulation of transcription factor activity;0.0125284299348013!GO:0008408;3'-5' exonuclease activity;0.0125284299348013!GO:0003950;NAD+ ADP-ribosyltransferase activity;0.0125754734896287!GO:0016272;prefoldin complex;0.0132447187715532!GO:0019901;protein kinase binding;0.0138544043472275!GO:0004532;exoribonuclease activity;0.0138984775149521!GO:0016896;exoribonuclease activity, producing 5'-phosphomonoesters;0.0138984775149521!GO:0016605;PML body;0.0141812852093688!GO:0008624;induction of apoptosis by extracellular signals;0.0143784816203069!GO:0051052;regulation of DNA metabolic process;0.0144198621477983!GO:0000059;protein import into nucleus, docking;0.0144445961492051!GO:0048518;positive regulation of biological process;0.0146706768499878!GO:0032508;DNA duplex unwinding;0.0148592613675837!GO:0032392;DNA geometric change;0.0148592613675837!GO:0046983;protein dimerization activity;0.0151469592880893!GO:0022411;cellular component disassembly;0.0151717470218826!GO:0006497;protein amino acid lipidation;0.0152222509640612!GO:0022890;inorganic cation transmembrane transporter activity;0.0154177465054166!GO:0016763;transferase activity, transferring pentosyl groups;0.015446744327178!GO:0050870;positive regulation of T cell activation;0.015608348254016!GO:0004197;cysteine-type endopeptidase activity;0.0156712496832334!GO:0008094;DNA-dependent ATPase activity;0.0158865170120695!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.0158865170120695!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.0158865170120695!GO:0048487;beta-tubulin binding;0.015904545658793!GO:0000119;mediator complex;0.0160406813981334!GO:0001667;ameboidal cell migration;0.0160406813981334!GO:0032027;myosin light chain binding;0.0160406813981334!GO:0005774;vacuolar membrane;0.0160406813981334!GO:0050865;regulation of cell activation;0.0162526492143941!GO:0006506;GPI anchor biosynthetic process;0.0163639737149623!GO:0015980;energy derivation by oxidation of organic compounds;0.0163639737149623!GO:0008139;nuclear localization sequence binding;0.0163639737149623!GO:0022406;membrane docking;0.0164530665176983!GO:0048278;vesicle docking;0.0164530665176983!GO:0007004;telomere maintenance via telomerase;0.0164837810808379!GO:0030663;COPI coated vesicle membrane;0.0165764429402793!GO:0030126;COPI vesicle coat;0.0165764429402793!GO:0016585;chromatin remodeling complex;0.0166168025200835!GO:0044438;microbody part;0.0166193442107648!GO:0044439;peroxisomal part;0.0166193442107648!GO:0008097;5S rRNA binding;0.016962318086155!GO:0050852;T cell receptor signaling pathway;0.0172539257882636!GO:0030137;COPI-coated vesicle;0.0178466293637447!GO:0031124;mRNA 3'-end processing;0.0178658197513352!GO:0008276;protein methyltransferase activity;0.0180895976335957!GO:0046467;membrane lipid biosynthetic process;0.0183688271043028!GO:0006626;protein targeting to mitochondrion;0.0188261595259254!GO:0000738;DNA catabolic process, exonucleolytic;0.0190201258001673!GO:0051098;regulation of binding;0.0193018499029542!GO:0051249;regulation of lymphocyte activation;0.0194333651263859!GO:0006904;vesicle docking during exocytosis;0.0199666585458334!GO:0006505;GPI anchor metabolic process;0.0199666761625949!GO:0032940;secretion by cell;0.0206241436738031!GO:0045893;positive regulation of transcription, DNA-dependent;0.0206559389520707!GO:0043621;protein self-association;0.020951799466689!GO:0005096;GTPase activator activity;0.021079018589065!GO:0006984;ER-nuclear signaling pathway;0.0213799212391953!GO:0051223;regulation of protein transport;0.0220110928837235!GO:0031123;RNA 3'-end processing;0.0220816737891711!GO:0030119;AP-type membrane coat adaptor complex;0.0222486929278214!GO:0016301;kinase activity;0.02351725811655!GO:0005521;lamin binding;0.0235429284683204!GO:0035258;steroid hormone receptor binding;0.0237837208413393!GO:0051540;metal cluster binding;0.0238432824410321!GO:0051536;iron-sulfur cluster binding;0.0238432824410321!GO:0045603;positive regulation of endothelial cell differentiation;0.024018072248043!GO:0050811;GABA receptor binding;0.0243748950612624!GO:0008287;protein serine/threonine phosphatase complex;0.024407741492736!GO:0005869;dynactin complex;0.0244390550592376!GO:0030127;COPII vesicle coat;0.0246297533469382!GO:0012507;ER to Golgi transport vesicle membrane;0.0246297533469382!GO:0042393;histone binding;0.0249734220918677!GO:0000781;chromosome, telomeric region;0.025372141023801!GO:0050863;regulation of T cell activation;0.0264041946374618!GO:0004722;protein serine/threonine phosphatase activity;0.0264041946374618!GO:0031902;late endosome membrane;0.0264041946374618!GO:0006839;mitochondrial transport;0.0265427844188535!GO:0005062;hematopoietin/interferon-class (D200-domain) cytokine receptor signal transducer activity;0.0265427844188535!GO:0002763;positive regulation of myeloid leukocyte differentiation;0.0266700712475842!GO:0016311;dephosphorylation;0.0268317762041173!GO:0008180;signalosome;0.0268317762041173!GO:0008757;S-adenosylmethionine-dependent methyltransferase activity;0.0268550797176903!GO:0043022;ribosome binding;0.0268879180378281!GO:0031903;microbody membrane;0.0269137696327969!GO:0005778;peroxisomal membrane;0.0269137696327969!GO:0009112;nucleobase metabolic process;0.0274788644358373!GO:0009116;nucleoside metabolic process;0.027483523603474!GO:0004428;inositol or phosphatidylinositol kinase activity;0.027921611858685!GO:0005765;lysosomal membrane;0.027921611858685!GO:0006914;autophagy;0.0279905352669054!GO:0030131;clathrin adaptor complex;0.0285709907713708!GO:0051920;peroxiredoxin activity;0.0285886003564521!GO:0016791;phosphoric monoester hydrolase activity;0.0286988178870924!GO:0000090;mitotic anaphase;0.0288693860099231!GO:0051322;anaphase;0.0288693860099231!GO:0030134;ER to Golgi transport vesicle;0.0289495551173749!GO:0000339;RNA cap binding;0.0289683160034155!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.0292240188794793!GO:0015002;heme-copper terminal oxidase activity;0.0292240188794793!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.0292240188794793!GO:0004129;cytochrome-c oxidase activity;0.0292240188794793!GO:0030833;regulation of actin filament polymerization;0.0293664642501517!GO:0000075;cell cycle checkpoint;0.0301058481558298!GO:0004402;histone acetyltransferase activity;0.0301282174677468!GO:0004468;lysine N-acetyltransferase activity;0.0301282174677468!GO:0045935;positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.0301282174677468!GO:0051235;maintenance of localization;0.0302842599223987!GO:0042608;T cell receptor binding;0.0303759103949475!GO:0044437;vacuolar part;0.0305129688597478!GO:0045941;positive regulation of transcription;0.0306520364908483!GO:0045045;secretory pathway;0.0309326541172002!GO:0016569;covalent chromatin modification;0.0309591219099014!GO:0006595;polyamine metabolic process;0.0309591219099014!GO:0046854;phosphoinositide phosphorylation;0.0316379838907952!GO:0006919;caspase activation;0.0318326315555842!GO:0046834;lipid phosphorylation;0.0319017075779034!GO:0002378;immunoglobulin biosynthetic process;0.0319017075779034!GO:0001911;negative regulation of leukocyte mediated cytotoxicity;0.0319017075779034!GO:0001915;negative regulation of T cell mediated cytotoxicity;0.0319017075779034!GO:0033116;ER-Golgi intermediate compartment membrane;0.0319222991228768!GO:0006284;base-excision repair;0.0320594914310195!GO:0051329;interphase of mitotic cell cycle;0.0320907142762825!GO:0006406;mRNA export from nucleus;0.0327116667006159!GO:0030374;ligand-dependent nuclear receptor transcription coactivator activity;0.0333190705695808!GO:0008320;protein transmembrane transporter activity;0.03334510969665!GO:0031461;cullin-RING ubiquitin ligase complex;0.0336778306535827!GO:0016788;hydrolase activity, acting on ester bonds;0.0337075965705098!GO:0030880;RNA polymerase complex;0.0342333480491321!GO:0007259;JAK-STAT cascade;0.0342333480491321!GO:0005095;GTPase inhibitor activity;0.0343231837391826!GO:0000287;magnesium ion binding;0.034421403763968!GO:0000288;mRNA catabolic process, deadenylation-dependent decay;0.034492884597825!GO:0019900;kinase binding;0.0347918479772812!GO:0019904;protein domain specific binding;0.034924526515464!GO:0043596;nuclear replication fork;0.0354369106332501!GO:0016773;phosphotransferase activity, alcohol group as acceptor;0.0354669417114228!GO:0009165;nucleotide biosynthetic process;0.0357296745030428!GO:0000726;non-recombinational repair;0.0361817807163516!GO:0051059;NF-kappaB binding;0.0367498944149116!GO:0005832;chaperonin-containing T-complex;0.0367957244844104!GO:0045454;cell redox homeostasis;0.0373615198251473!GO:0006268;DNA unwinding during replication;0.037791399186484!GO:0009161;ribonucleoside monophosphate metabolic process;0.0381250203969564!GO:0009156;ribonucleoside monophosphate biosynthetic process;0.0381250203969564!GO:0051325;interphase;0.0388665639748385!GO:0007030;Golgi organization and biogenesis;0.0388956976508796!GO:0042158;lipoprotein biosynthetic process;0.0390290367965773!GO:0030867;rough endoplasmic reticulum membrane;0.0390290367965773!GO:0000178;exosome (RNase complex);0.0390429771534411!GO:0016570;histone modification;0.0393267192367561!GO:0004659;prenyltransferase activity;0.0404061772281214!GO:0004003;ATP-dependent DNA helicase activity;0.0404950631134874!GO:0031988;membrane-bound vesicle;0.0411521303590919!GO:0001784;phosphotyrosine binding;0.0411521303590919!GO:0003702;RNA polymerase II transcription factor activity;0.041371183155026!GO:0000303;response to superoxide;0.0419137975112206!GO:0022884;macromolecule transmembrane transporter activity;0.0420335983320672!GO:0015450;P-P-bond-hydrolysis-driven protein transmembrane transporter activity;0.0420335983320672!GO:0000118;histone deacetylase complex;0.0427734045387499!GO:0046588;negative regulation of calcium-dependent cell-cell adhesion;0.0427734045387499!GO:0046586;regulation of calcium-dependent cell-cell adhesion;0.0427734045387499!GO:0031901;early endosome membrane;0.0427734045387499!GO:0005777;peroxisome;0.0427734045387499!GO:0042579;microbody;0.0427734045387499!GO:0031982;vesicle;0.0432901811111488!GO:0015923;mannosidase activity;0.0433457461869032!GO:0019058;viral infectious cycle;0.0438566395863318!GO:0045815;positive regulation of gene expression, epigenetic;0.0439973215970245!GO:0046426;negative regulation of JAK-STAT cascade;0.0443540740620138!GO:0030125;clathrin vesicle coat;0.0444085645153262!GO:0030665;clathrin coated vesicle membrane;0.0444085645153262!GO:0045309;protein phosphorylated amino acid binding;0.0444097155906764!GO:0030968;unfolded protein response;0.0445977788019845!GO:0000079;regulation of cyclin-dependent protein kinase activity;0.0452797098966145!GO:0004721;phosphoprotein phosphatase activity;0.0454818437437892!GO:0004576;oligosaccharyl transferase activity;0.0457174205640651!GO:0043281;regulation of caspase activity;0.0459770348389935!GO:0030041;actin filament polymerization;0.046038283175271!GO:0000123;histone acetyltransferase complex;0.0466336305961644!GO:0033673;negative regulation of kinase activity;0.0469603178307229!GO:0006469;negative regulation of protein kinase activity;0.0469603178307229!GO:0051219;phosphoprotein binding;0.0469603178307229!GO:0008637;apoptotic mitochondrial changes;0.0471586750379728!GO:0017091;AU-rich element binding;0.0480471449784506!GO:0050779;RNA destabilization;0.0480471449784506!GO:0000289;poly(A) tail shortening;0.0480471449784506!GO:0032984;macromolecular complex disassembly;0.0480471449784506!GO:0006144;purine base metabolic process;0.048720788674417!GO:0000018;regulation of DNA recombination;0.0488293792765005!GO:0006378;mRNA polyadenylation;0.0489035961499445!GO:0050681;androgen receptor binding;0.0490545737315863!GO:0006661;phosphatidylinositol biosynthetic process;0.0491968924416487
|sample_id=11909
|sample_note=
|sample_sex=male
|sample_species=Human (Homo sapiens)
|sample_strain=
|sample_tissue=blood
|top_motifs=PAX3,7:3.46237997903;RUNX1..3:3.17427973149;CDX1,2,4:2.96700205598;CREB1:2.92963056442;BPTF:2.81995109378;FOX{D1,D2}:2.79492114221;ELF1,2,4:2.73362284238;FOX{F1,F2,J1}:2.55221773373;RFX2..5_RFXANK_RFXAP:2.4831228154;T:2.3814474236;ATF5_CREB3:2.31430050652;RORA:2.27112965759;FOXO1,3,4:2.17120149928;HMX1:2.13064615707;ATF4:2.0548891404;DMAP1_NCOR{1,2}_SMARC:2.01572285518;RFX1:2.0113766268;ETS1,2:1.95439931704;TLX2:1.79273715636;PDX1:1.77511773078;FOX{I1,J2}:1.77059054919;PAX4:1.62779640038;ZBTB16:1.62466349878;FOXN1:1.56067595983;LEF1_TCF7_TCF7L1,2:1.48669310707;IRF1,2:1.46649569355;SPI1:1.39325458136;PAX2:1.35595089685;GATA6:1.2886239924;ATF2:1.19092291502;ELK1,4_GABP{A,B1}:1.12137464961;TGIF1:1.09489660568;PBX1:1.08745628199;JUN:1.04931608892;SPIB:1.02718341162;BREu{core}:0.966967313076;NKX6-1,2:0.951685060399;NKX2-1,4:0.926944645246;ATF6:0.883477119467;PAX6:0.796766092276;IRF7:0.786907646034;POU1F1:0.723119626178;NFATC1..3:0.719343378999;IKZF2:0.712279319091;TBX4,5:0.696661455506;ALX1:0.658789951141;SOX2:0.630611326332;FOXA2:0.571270397973;NFKB1_REL_RELA:0.569087824606;AHR_ARNT_ARNT2:0.518212560338;NFIL3:0.483891539758;PITX1..3:0.46296132186;YY1:0.454244596403;SNAI1..3:0.44345613775;HIF1A:0.430989437292;CUX2:0.40821379351;CRX:0.362054132148;MAFB:0.342079431908;NFIX:0.324700659899;FOXQ1:0.286540754664;ZEB1:0.286278665291;MYB:0.232900281478;NFE2L1:0.207166028881;STAT1,3:0.199052789083;HOX{A6,A7,B6,B7}:0.189678477737;SPZ1:0.184723847392;FOXP1:0.169711200842;MYOD1:0.148050012294;NANOG{mouse}:0.116577009399;NKX2-2,8:0.113635625739;FOXD3:0.107820134098;EVI1:0.0781172185896;NRF1:0.0760728609961;SOX5:0.0356639230675;NKX3-1:0.0239487188282;LMO2:-0.0126916833097;POU2F1..3:-0.0508944789449;STAT5{A,B}:-0.057946391804;HMGA1,2:-0.061109460871;TAL1_TCF{3,4,12}:-0.0846657516464;VSX1,2:-0.0875218838284;ZNF384:-0.114119927411;FOSL2:-0.123901318435;E2F1..5:-0.147098206468;SREBF1,2:-0.156138477918;AR:-0.17008872252;RBPJ:-0.251795835138;STAT2,4,6:-0.292538040489;NANOG:-0.314968011445;EP300:-0.319072773803;SMAD1..7,9:-0.329365821215;NFY{A,B,C}:-0.333525293471;HBP1_HMGB_SSRP1_UBTF:-0.348927259998;OCT4_SOX2{dimer}:-0.370577313839;PAX8:-0.37952167074;FOXP3:-0.38976151239;AIRE:-0.410333063533;PRRX1,2:-0.425983019499;MYFfamily:-0.432443377886;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.440111171605;FOXM1:-0.446946945543;HNF4A_NR2F1,2:-0.454556744725;ZNF143:-0.460843485224;NR5A1,2:-0.469075584216;ALX4:-0.471460600413;HLF:-0.476047989634;RXRA_VDR{dimer}:-0.482898181988;BACH2:-0.482926857135;HAND1,2:-0.498916822595;HOXA9_MEIS1:-0.512258293217;NFE2L2:-0.523648707926;LHX3,4:-0.525557710383;HNF1A:-0.535739065671;CEBPA,B_DDIT3:-0.543750239098;DBP:-0.56549935808;FOS_FOS{B,L1}_JUN{B,D}:-0.570269107635;POU3F1..4:-0.598069422429;RREB1:-0.652136732747;NFE2:-0.654742405235;HES1:-0.65926320989;GFI1:-0.702735831887;TOPORS:-0.79397750731;MED-1{core}:-0.800087654691;SRF:-0.815210868264;PAX5:-0.816355064615;EGR1..3:-0.839758322942;GCM1,2:-0.851054331623;MEF2{A,B,C,D}:-0.855021336129;GLI1..3:-0.862886900366;NHLH1,2:-0.863471034905;ZBTB6:-0.912287515225;MZF1:-0.934473108211;TFAP4:-0.966992442558;ZNF148:-0.985919699157;GFI1B:-1.00107458617;SOX{8,9,10}:-1.01218307326;PRDM1:-1.01841648422;ZFP161:-1.0421685864;GATA4:-1.06135274684;HOX{A5,B5}:-1.08236564745;UFEwm:-1.08282022863;MYBL2:-1.08737625859;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-1.08893421276;REST:-1.0951654436;ARID5B:-1.09755333246;ADNP_IRX_SIX_ZHX:-1.117532627;NR1H4:-1.14748138426;SOX17:-1.1516807115;TFDP1:-1.18520958864;MTF1:-1.20676694543;MAZ:-1.22351570581;bHLH_family:-1.23728521585;ZIC1..3:-1.24267961594;ZNF238:-1.24443913868;ZNF423:-1.24694864533;NKX2-3_NKX2-5:-1.26683501392;PPARG:-1.27110205953;PATZ1:-1.30013425635;MTE{core}:-1.35549683503;HSF1,2:-1.38836910755;NR6A1:-1.39042046524;TP53:-1.53833384281;KLF4:-1.54124409426;GTF2I:-1.54649198672;POU5F1:-1.58307073359;ESRRA:-1.60713892373;HOX{A4,D4}:-1.63033756559;TFCP2:-1.63253257801;XBP1:-1.64397828309;TLX1..3_NFIC{dimer}:-1.67229619146;ONECUT1,2:-1.67381864193;TEAD1:-1.68313843257;CDC5L:-1.69794224958;NKX3-2:-1.76796038867;TFAP2B:-1.78291015937;GZF1:-1.80018349768;FOXL1:-1.81211297425;NR3C1:-1.81507531927;TEF:-1.83327888564;POU6F1:-1.87096392229;ESR1:-1.87406315173;HIC1:-1.8962502056;PAX1,9:-1.91005672482;GTF2A1,2:-1.93339510219;TBP:-1.97560760149;EBF1:-2.01519924901;TFAP2{A,C}:-2.10635984705;RXR{A,B,G}:-2.11064351634;EN1,2:-2.12068508441;XCPE1{core}:-2.15728993096;SP1:-2.16259514118;IKZF1:-2.87682411062
|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11909-125G1;search_select_hide=table117:FF:11909-125G1
}}
}}

Latest revision as of 18:28, 4 June 2020

Name:CD4+CD25-CD45RA- memory conventional T cells, donor3
Species:Human (Homo sapiens)
Library ID:CNhs13539
Sample type:primary cells
Genomic View: UCSC
RefEX:Specific genes
FANTOM CAT:1, 2, 3, 4, 5, 6, 7
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissueblood
dev stageNA
sexmale
age23
cell typeT cell
cell lineNA
companyNA
collaborationMichael Rehli (University of Regensberg)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot number39-40
catalog numberNA
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00004886
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs13539 CAGE DRX008194 DRR009066
Accession ID Hg19

Library idBAMCTSS
CNhs13539 DRZ000491 DRZ001876
Accession ID Hg38

Library idBAMCTSS
CNhs13539 DRZ011841 DRZ013226
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0.515
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis-0.131
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma-0.194
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190.239
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0.481
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40.0105
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0.178
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0.401
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural0.681
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD190.475
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0.88
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle-0.0351
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0.098
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed0.00892
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0.245
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190.632
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte-0.0526
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140.724
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0.548
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus-0.0246
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory0.46
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0.624
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40.245
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD80.697
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40.178
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth0.75
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0.703
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0.0687
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40.751
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small-0.549
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0.529
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0.812
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0.0327
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0.515
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0.934
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0.355
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340.178
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0.401
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs13539

Jaspar motifP-value
MA0002.26.85667e-7
MA0003.10.47
MA0004.10.719
MA0006.10.135
MA0007.10.726
MA0009.10.0929
MA0014.10.993
MA0017.10.926
MA0018.23.47563e-6
MA0019.10.75
MA0024.10.725
MA0025.10.473
MA0027.10.859
MA0028.12.48867e-4
MA0029.10.149
MA0030.10.00465
MA0031.11.41627e-4
MA0035.20.226
MA0038.10.0377
MA0039.20.469
MA0040.10.623
MA0041.10.59
MA0042.10.739
MA0043.10.0377
MA0046.10.102
MA0047.20.0505
MA0048.10.756
MA0050.11.93587e-8
MA0051.10.00131
MA0052.10.00503
MA0055.10.693
MA0057.10.615
MA0058.10.711
MA0059.10.66
MA0060.10.0266
MA0061.10.00139
MA0062.22.87872e-15
MA0065.20.314
MA0066.10.212
MA0067.10.0285
MA0068.10.202
MA0069.10.903
MA0070.10.432
MA0071.10.699
MA0072.10.166
MA0073.10.942
MA0074.10.729
MA0076.13.72409e-6
MA0077.10.00719
MA0078.10.78
MA0079.20.327
MA0080.23.14537e-11
MA0081.10.0159
MA0083.10.0399
MA0084.10.358
MA0087.10.626
MA0088.10.397
MA0090.13.53184e-4
MA0091.10.652
MA0092.10.982
MA0093.10.597
MA0099.20.00285
MA0100.10.421
MA0101.10.286
MA0102.20.958
MA0103.10.346
MA0104.20.154
MA0105.12.4241e-6
MA0106.10.198
MA0107.10.403
MA0108.21.52826e-9
MA0111.10.3
MA0112.20.671
MA0113.10.65
MA0114.10.96
MA0115.10.454
MA0116.15.05178e-4
MA0117.10.0659
MA0119.10.672
MA0122.10.546
MA0124.10.406
MA0125.10.151
MA0131.10.139
MA0135.10.102
MA0136.11.27146e-22
MA0137.20.991
MA0138.20.292
MA0139.10.0437
MA0140.10.127
MA0141.10.326
MA0142.10.368
MA0143.10.35
MA0144.10.921
MA0145.10.194
MA0146.10.958
MA0147.10.114
MA0148.10.173
MA0149.10.242
MA0150.10.665
MA0152.10.0149
MA0153.10.219
MA0154.10.111
MA0155.10.271
MA0156.13.41286e-20
MA0157.10.00101
MA0159.10.427
MA0160.10.714
MA0162.10.635
MA0163.14.75593e-6
MA0164.10.966
MA0258.10.665
MA0259.10.262



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs13539

Novel motifP-value
10.22
100.00832
1000.822
1010.137
1020.889
1030.295
1040.961
1050.551
1060.713
1070.0147
1080.597
1090.343
110.256
1100.939
1110.688
1120.638
1130.214
1140.431
1150.313
1160.333
1170.00446
1180.28
1190.588
120.829
1200.672
1210.873
1220.92
1230.0081
1240.64
1250.861
1260.474
1270.9
1280.733
1290.969
130.456
1300.335
1310.725
1320.269
1330.985
1340.62
1350.629
1360.758
1370.0397
1380.34
1390.044
140.601
1400.0945
1410.405
1420.644
1430.00272
1440.819
1450.684
1460.851
1470.0224
1480.0854
1490.468
150.112
1500.668
1510.751
1520.19
1530.49
1540.38
1550.0609
1560.982
1570.267
1580.00916
1590.617
160.743
1600.387
1610.874
1620.0826
1630.518
1640.0933
1650.212
1660.599
1670.133
1680.483
1690.461
170.67
180.984
190.162
20.494
200.449
210.766
220.422
230.58
240.766
250.0635
260.654
270.512
280.483
290.0109
30.169
300.12
310.742
320.0726
330.247
340.324
350.127
360.0374
370.28
380.828
390.247
40.773
400.836
410.212
420.0915
430.478
440.64
450.279
460.374
470.221
480.428
490.136
50.31
500.402
510.817
520.321
530.543
540.905
550.56
560.996
570.679
580.121
590.835
60.921
600.634
610.144
620.0972
630.898
640.507
650.701
660.56
670.971
680.896
690.813
70.303
700.0589
710.0372
720.1
730.972
740.514
750.0238
760.113
770.0272
780.594
790.958
80.917
800.0152
810.396
820.16
830.95
840.885
850.795
860.175
870.341
880.873
890.12
90.786
900.0211
910.526
920.477
930.371
940.146
950.266
960.174
970.39
980.22
998.87521e-5



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs13539


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
NA

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