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{{f5samples
{{f5samples
|DRA_sample_Accession=CAGE@SAMD00005868
|DRA_sample_Accession=CAGE@SAMD00005868
|accession_numbers=CAGE;DRX008385;DRR009257;DRZ000682;DRZ002067
|accession_numbers=CAGE;DRX008385;DRR009257;DRZ000682;DRZ002067;DRZ012032;DRZ013417
|ancestors_in_anatomy_facet=
|ancestors_in_anatomy_facet=
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000197,CL:0000003,CL:0000548,CL:0000075,CL:0000066,CL:0002371,CL:0000710,CL:0000255,CL:0002077,CL:0000098,CL:0002167
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000197,CL:0000003,CL:0000548,CL:0000075,CL:0000066,CL:0002371,CL:0000710,CL:0000255,CL:0002077,CL:0000098,CL:0002167
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|created_by=
|created_by=
|creation_date=
|creation_date=
|data_phase=1
|data_phase=2
|datafreeze_phase=1
|datafreeze_phase=2
|def=
|def=
|expression_enrichment_score=chr14:37131058..37131139,+!p1@PAX9!1.95!87.97!PAX9;;chr1:170632285..170632309,+!p1@PRRX1!1.77!64.41!PRRX1;;chr7:19157248..19157268,-!p1@TWIST1!1.73!141.67!TWIST1;;chr14:61116183..61116208,-!p1@SIX1!1.71!184.14!SIX1;;chr9:132427883..132427951,+!p2@PRRX2!1.69!48.53!PRRX2;;chr9:132427972..132428056,+!p1@PRRX2!1.62!52.99!PRRX2;;chr20:55204351..55204377,+!p1@TFAP2C!1.62!50.85!TFAP2C;;chr1:170633348..170633399,+!p2@PRRX1!1.52!43.18!PRRX1;;chrX:2418949..2419024,-!p1@DHRSX,p1@ZBED1!1.48!29.44!ZBED1;;chr2:223163706..223163730,-!p1@PAX3!1.47!28.55!PAX3;;chr6:10412600..10412637,-!p1@TFAP2A!1.44!43.36!TFAP2A;;chr15:57511609..57511651,+!p2@TCF12!1.37!37.29!TCF12;;chr1:170633262..170633285,+!p3@PRRX1!1.33!23.02!PRRX1;;chr2:239756671..239756732,+!p1@TWIST2!1.31!60.67!TWIST2;;chr11:46299199..46299233,+!p1@CREB3L1!1.29!92.60!CREB3L1;;chr6:10415276..10415341,-!p2@TFAP2A!1.24!19.81!TFAP2A;;chr15:42749722..42749739,-!p2@ZFP106!1.21!27.30!ZFP106;;chr1:170632959..170632987,+!p4@PRRX1!1.17!15.34!PRRX1;;chr7:44143925..44143970,+!p1@AEBP1!1.16!299.40!AEBP1;;chr11:46299539..46299620,+!p2@CREB3L1!1.16!22.48!CREB3L1;;chr8:99956662..99956684,+!p1@OSR2!1.16!20.52!OSR2;;chr1:170632723..170632739,+!p8@PRRX1!1.16!13.56!PRRX1;;chr11:44331576..44331650,-!p1@ALX4!1.15!13.03!ALX4;;chr19:13134772..13134822,+!p2@NFIX!1.14!18.74!NFIX;;chr1:170632683..170632696,+!p12@PRRX1!1.12!12.13!PRRX1;;chr3:128212033..128212051,-!p1@GATA2!1.11!11.95!GATA2;;chr3:128206762..128206781,-!p2@GATA2!1.10!72.26!GATA2;;chr16:86600426..86600441,+!p1@FOXC2!1.10!28.55!FOXC2;;chr6:10412392..10412409,-!p4@TFAP2A!1.10!13.20!TFAP2A;;chr5:321810..321877,+!p1@AHRR!1.09!35.86!AHRR;;chr2:239756739..239756755,+!p2@TWIST2!1.07!18.56!TWIST2;;chr1:170633058..170633084,+!p5@PRRX1!1.07!10.88!PRRX1;;chr7:44143978..44143989,+!p2@AEBP1!1.05!18.74!AEBP1;;chr6:1389789..1389821,+!p1@FOXF2!1.04!13.92!FOXF2;;chr19:13136241..13136258,+!p7@NFIX!1.04!13.56!NFIX;;chr2:46612334..46612349,+!p6@EPAS1!1.02!12.67!EPAS1;;chr1:110613238..110613272,-!p1@ALX3!1.02!9.46!ALX3;;chr2:46602901..46602926,+!p7@EPAS1!1.01!12.49!EPAS1;;chr11:46333934..46333963,+!p5@CREB3L1!1.00!9.10!CREB3L1;;chr12:85673977..85674015,+!p1@ALX1!1.00!9.10!ALX1;;chr16:31076332..31076388,-!p3@ZNF668!1.00!8.92!ZNF668;;chr7:44143997..44144008,+!p3@AEBP1!0.99!11.24!AEBP1;;chr6:126240380..126240430,+!p2@NCOA7!0.98!22.66!NCOA7;;chr6:10412576..10412599,-!p5@TFAP2A!0.98!8.56!TFAP2A;;chr10:63809106..63809127,+!p1@ARID5B!0.97!114.91!ARID5B;;chr12:85674018..85674039,+!p3@ALX1!0.97!8.39!ALX1;;chr15:96869255..96869291,+!p6@NR2F2!0.96!14.99!NR2F2;;chr14:61116168..61116180,-!p2@SIX1!0.96!9.28!SIX1;;chr1:170632250..170632277,+!p7@PRRX1!0.96!8.21!PRRX1;;chr12:115121962..115121987,-!p1@TBX3!0.95!69.23!TBX3;;chr16:86600870..86600921,+!p2@FOXC2!0.95!7.85!FOXC2;;chr14:62203595..62203676,+!p4@HIF1A!0.92!13.92!HIF1A;;chr11:46333979..46333991,+!p7@CREB3L1!0.92!7.32!CREB3L1;;chr10:63809013..63809041,+!p3@ARID5B!0.91!41.04!ARID5B;;chr14:24837368..24837401,+!p1@NFATC4!0.91!17.49!NFATC4;;chr2:46524537..46524553,+!p1@EPAS1!0.90!714.96!EPAS1;;chr14:73360799..73360817,-!p1@DPF3!0.90!25.16!DPF3;;chr9:102584262..102584276,+!p1@NR4A3!0.89!15.52!NR4A3;;chr2:46602879..46602899,+!p8@EPAS1!0.89!8.39!EPAS1;;chr15:96873984..96873999,+!p3@NR2F2!0.88!50.67!NR2F2;;chr10:63853436..63853442,+!p4@ARID5B!0.88!37.29!ARID5B;;chr8:77593474..77593612,+!p1@ZFHX4!0.88!29.08!ZFHX4;;chr2:8822176..8822196,+!p1@ID2!0.86!938.36!ID2;;chr16:86544113..86544145,+!p1@FOXF1!0.86!7.85!FOXF1;;chr8:93074803..93074845,-!p1@RUNX1T1!0.86!6.25!RUNX1T1;;chr11:46333883..46333900,+!p8@CREB3L1!0.86!6.25!CREB3L1;;chr2:208030647..208030689,-!p1@KLF7!0.85!54.06!KLF7;;chr1:8934931..8934947,-!p4@ENO1!0.85!21.05!ENO1;;chr10:63809077..63809089,+!p5@ARID5B!0.85!13.74!ARID5B;;chr6:126240442..126240459,+!p4@NCOA7!0.84!7.67!NCOA7;;chr14:37126765..37126799,+!p2@PAX9!0.84!5.89!PAX9;;chr1:170632137..170632172,+!p10@PRRX1!0.84!5.89!PRRX1;;chr11:65686802..65686818,+!p6@DRAP1!0.83!10.35!DRAP1;;chr7:19157043..19157088,-!p2@TWIST1!0.82!14.99!TWIST1;;chr3:141121847..141121868,+!p5@ZBTB38!0.82!8.74!ZBTB38;;chr8:72756667..72756736,-!p2@MSC!0.81!8.74!MSC;;chr1:54204818..54204870,-!p@chr1:54204818..54204870,-!0.81!5.89!GLIS1;;chr16:4366053..4366076,+!p@chr16:4366053..4366076,+!0.80!57.99!GLIS2;;chr6:45390025..45390076,+!p2@RUNX2!0.80!13.38!RUNX2;;chr12:80085061..80085119,-!p6@PAWR!0.80!8.74!PAWR;;chr8:72756063..72756125,-!p1@MSC!0.79!11.06!MSC;;chr8:72756637..72756664,-!p3@MSC!0.79!5.89!MSC;;chr1:110613276..110613299,-!p2@ALX3!0.79!5.17!ALX3;;chr1:170632647..170632659,+!p17@PRRX1!0.79!5.17!PRRX1;;chr5:72744594..72744609,-!p1@FOXD1!0.78!24.98!FOXD1;;chr1:170632477..170632506,+!p6@PRRX1!0.78!5.00!PRRX1;;chr10:114710098..114710130,+!p2@TCF7L2!0.77!40.32!TCF7L2;;chr8:49833948..49833973,-!p2@SNAI2!0.77!34.26!SNAI2;;chr11:12696071..12696086,+!p3@TEAD1!0.77!6.60!TEAD1;;chr7:17369649..17369664,+!p4@AHR!0.77!6.07!AHR;;chr12:53625846..53625861,-!p6@RARG!0.76!4.82!RARG;;chr17:46132044..46132080,+!p4@NFE2L1!0.76!4.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|expression_enrichment_score=chr14:37131058..37131139,+!p1@PAX9!1.95!87.97!PAX9;;chr1:170632285..170632309,+!p1@PRRX1!1.77!64.41!PRRX1;;chr7:19157248..19157268,-!p1@TWIST1!1.73!141.67!TWIST1;;chr14:61116183..61116208,-!p1@SIX1!1.71!184.14!SIX1;;chr9:132427883..132427951,+!p2@PRRX2!1.69!48.53!PRRX2;;chr9:132427972..132428056,+!p1@PRRX2!1.62!52.99!PRRX2;;chr20:55204351..55204377,+!p1@TFAP2C!1.62!50.85!TFAP2C;;chr1:170633348..170633399,+!p2@PRRX1!1.52!43.18!PRRX1;;chrX:2418949..2419024,-!p1@DHRSX,p1@ZBED1!1.48!29.44!ZBED1;;chr2:223163706..223163730,-!p1@PAX3!1.47!28.55!PAX3;;chr6:10412600..10412637,-!p1@TFAP2A!1.44!43.36!TFAP2A;;chr15:57511609..57511651,+!p2@TCF12!1.37!37.29!TCF12;;chr1:170633262..170633285,+!p3@PRRX1!1.33!23.02!PRRX1;;chr2:239756671..239756732,+!p1@TWIST2!1.31!60.67!TWIST2;;chr11:46299199..46299233,+!p1@CREB3L1!1.29!92.60!CREB3L1;;chr6:10415276..10415341,-!p2@TFAP2A!1.24!19.81!TFAP2A;;chr15:42749722..42749739,-!p2@ZFP106!1.21!27.30!ZFP106;;chr1:170632959..170632987,+!p4@PRRX1!1.17!15.34!PRRX1;;chr7:44143925..44143970,+!p1@AEBP1!1.16!299.40!AEBP1;;chr11:46299539..46299620,+!p2@CREB3L1!1.16!22.48!CREB3L1;;chr8:99956662..99956684,+!p1@OSR2!1.16!20.52!OSR2;;chr1:170632723..170632739,+!p8@PRRX1!1.16!13.56!PRRX1;;chr11:44331576..44331650,-!p1@ALX4!1.15!13.03!ALX4;;chr19:13134772..13134822,+!p2@NFIX!1.14!18.74!NFIX;;chr1:170632683..170632696,+!p12@PRRX1!1.12!12.13!PRRX1;;chr3:128212033..128212051,-!p1@GATA2!1.11!11.95!GATA2;;chr3:128206762..128206781,-!p2@GATA2!1.10!72.26!GATA2;;chr16:86600426..86600441,+!p1@FOXC2!1.10!28.55!FOXC2;;chr6:10412392..10412409,-!p4@TFAP2A!1.10!13.20!TFAP2A;;chr5:321810..321877,+!p1@AHRR!1.09!35.86!AHRR;;chr2:239756739..239756755,+!p2@TWIST2!1.07!18.56!TWIST2;;chr1:170633058..170633084,+!p5@PRRX1!1.07!10.88!PRRX1;;chr7:44143978..44143989,+!p2@AEBP1!1.05!18.74!AEBP1;;chr6:1389789..1389821,+!p1@FOXF2!1.04!13.92!FOXF2;;chr19:13136241..13136258,+!p7@NFIX!1.04!13.56!NFIX;;chr2:46612334..46612349,+!p6@EPAS1!1.02!12.67!EPAS1;;chr1:110613238..110613272,-!p1@ALX3!1.02!9.46!ALX3;;chr2:46602901..46602926,+!p7@EPAS1!1.01!12.49!EPAS1;;chr11:46333934..46333963,+!p5@CREB3L1!1.00!9.10!CREB3L1;;chr12:85673977..85674015,+!p1@ALX1!1.00!9.10!ALX1;;chr16:31076332..31076388,-!p3@ZNF668!1.00!8.92!ZNF668;;chr7:44143997..44144008,+!p3@AEBP1!0.99!11.24!AEBP1;;chr6:126240380..126240430,+!p2@NCOA7!0.98!22.66!NCOA7;;chr6:10412576..10412599,-!p5@TFAP2A!0.98!8.56!TFAP2A;;chr10:63809106..63809127,+!p1@ARID5B!0.97!114.91!ARID5B;;chr12:85674018..85674039,+!p3@ALX1!0.97!8.39!ALX1;;chr15:96869255..96869291,+!p6@NR2F2!0.96!14.99!NR2F2;;chr14:61116168..61116180,-!p2@SIX1!0.96!9.28!SIX1;;chr1:170632250..170632277,+!p7@PRRX1!0.96!8.21!PRRX1;;chr12:115121962..115121987,-!p1@TBX3!0.95!69.23!TBX3;;chr16:86600870..86600921,+!p2@FOXC2!0.95!7.85!FOXC2;;chr14:62203595..62203676,+!p4@HIF1A!0.92!13.92!HIF1A;;chr11:46333979..46333991,+!p7@CREB3L1!0.92!7.32!CREB3L1;;chr10:63809013..63809041,+!p3@ARID5B!0.91!41.04!ARID5B;;chr14:24837368..24837401,+!p1@NFATC4!0.91!17.49!NFATC4;;chr2:46524537..46524553,+!p1@EPAS1!0.90!714.96!EPAS1;;chr14:73360799..73360817,-!p1@DPF3!0.90!25.16!DPF3;;chr9:102584262..102584276,+!p1@NR4A3!0.89!15.52!NR4A3;;chr2:46602879..46602899,+!p8@EPAS1!0.89!8.39!EPAS1;;chr15:96873984..96873999,+!p3@NR2F2!0.88!50.67!NR2F2;;chr10:63853436..63853442,+!p4@ARID5B!0.88!37.29!ARID5B;;chr8:77593474..77593612,+!p1@ZFHX4!0.88!29.08!ZFHX4;;chr2:8822176..8822196,+!p1@ID2!0.86!938.36!ID2;;chr16:86544113..86544145,+!p1@FOXF1!0.86!7.85!FOXF1;;chr8:93074803..93074845,-!p1@RUNX1T1!0.86!6.25!RUNX1T1;;chr11:46333883..46333900,+!p8@CREB3L1!0.86!6.25!CREB3L1;;chr2:208030647..208030689,-!p1@KLF7!0.85!54.06!KLF7;;chr1:8934931..8934947,-!p4@ENO1!0.85!21.05!ENO1;;chr10:63809077..63809089,+!p5@ARID5B!0.85!13.74!ARID5B;;chr6:126240442..126240459,+!p4@NCOA7!0.84!7.67!NCOA7;;chr14:37126765..37126799,+!p2@PAX9!0.84!5.89!PAX9;;chr1:170632137..170632172,+!p10@PRRX1!0.84!5.89!PRRX1;;chr11:65686802..65686818,+!p6@DRAP1!0.83!10.35!DRAP1;;chr7:19157043..19157088,-!p2@TWIST1!0.82!14.99!TWIST1;;chr3:141121847..141121868,+!p5@ZBTB38!0.82!8.74!ZBTB38;;chr8:72756667..72756736,-!p2@MSC!0.81!8.74!MSC;;chr1:54204818..54204870,-!p@chr1:54204818..54204870,-!0.81!5.89!GLIS1;;chr16:4366053..4366076,+!p@chr16:4366053..4366076,+!0.80!57.99!GLIS2;;chr6:45390025..45390076,+!p2@RUNX2!0.80!13.38!RUNX2;;chr12:80085061..80085119,-!p6@PAWR!0.80!8.74!PAWR;;chr8:72756063..72756125,-!p1@MSC!0.79!11.06!MSC;;chr8:72756637..72756664,-!p3@MSC!0.79!5.89!MSC;;chr1:110613276..110613299,-!p2@ALX3!0.79!5.17!ALX3;;chr1:170632647..170632659,+!p17@PRRX1!0.79!5.17!PRRX1;;chr5:72744594..72744609,-!p1@FOXD1!0.78!24.98!FOXD1;;chr1:170632477..170632506,+!p6@PRRX1!0.78!5.00!PRRX1;;chr10:114710098..114710130,+!p2@TCF7L2!0.77!40.32!TCF7L2;;chr8:49833948..49833973,-!p2@SNAI2!0.77!34.26!SNAI2;;chr11:12696071..12696086,+!p3@TEAD1!0.77!6.60!TEAD1;;chr7:17369649..17369664,+!p4@AHR!0.77!6.07!AHR;;chr12:53625846..53625861,-!p6@RARG!0.76!4.82!RARG;;chr17:46132044..46132080,+!p4@NFE2L1!0.76!4.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|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000066;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000133;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000221;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000710;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002077;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002167
|ffid_belonging_in_development=CL:0000133,CL:0000221
|ffid_belonging_in_development=CL:0000133,CL:0000221
|fonse_cell_line=
|fonse_cell_line=
Line 41: Line 42:
|fonse_treatment_closure=
|fonse_treatment_closure=
|has_quality=
|has_quality=
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Olfactory%2520epithelial%2520cells%252c%2520donor2.CNhs13817.11934-125I8.hg19.nobarcode.bam
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Olfactory%2520epithelial%2520cells%252c%2520donor2.CNhs13817.11934-125I8.hg19.ctss.bed.gz
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Olfactory%2520epithelial%2520cells%252c%2520donor2.CNhs13817.11934-125I8.hg19.nobarcode.rdna.fa.gz
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Olfactory%2520epithelial%2520cells%252c%2520donor2.CNhs13817.11934-125I8.hg38.nobarcode.bam
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Olfactory%2520epithelial%2520cells%252c%2520donor2.CNhs13817.11934-125I8.hg38.nobarcode.ctss.bed.gz
|id=FF:11934-125I8
|id=FF:11934-125I8
|is_a=FF:0000002;;FF:0000210;;FF:0200002
|is_a=FF:0000002;;FF:0000210;;FF:0200002
|is_obsolete=
|is_obsolete=
|library_id=CNhs13817
|library_id=CNhs13817
|library_id_phase_based=1:CNhs13817
|library_id_phase_based=2:CNhs13817
|microRNAs=
|microRNAs_nn=
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11934
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11934
|name=Olfactory epithelial cells, donor2
|name=Olfactory epithelial cells, donor2
|namespace=
|namespace=
Line 53: Line 63:
|profile_rnaseq=
|profile_rnaseq=
|profile_srnaseq=
|profile_srnaseq=
|refex=http://refex.dbcls.jp/genelist.php?lang
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Line 90: Line 101:
|top_motifs=UFEwm:3.45576589677;ALX4:3.44084096562;NKX2-2,8:3.29312062069;HMGA1,2:3.29050626169;EVI1:3.13805424835;TAL1_TCF{3,4,12}:2.57451948664;KLF4:2.34771133235;GLI1..3:2.3284872242;FOXL1:2.32389508032;NR3C1:2.23016755176;AIRE:2.18109441132;ESR1:2.13354365148;GATA4:1.85324745425;PRDM1:1.85070301798;ZIC1..3:1.82730215118;FOXD3:1.80443099375;TOPORS:1.70737718026;HES1:1.6199016451;NFE2L1:1.56741113579;ZNF384:1.46408163546;MYBL2:1.45292592858;TEAD1:1.39831979109;RXR{A,B,G}:1.39706326227;HIF1A:1.37032720376;NKX3-1:1.35822484835;NR6A1:1.31224560131;RXRA_VDR{dimer}:1.30467729591;ZBTB16:1.28489630155;HMX1:1.24929018109;NKX2-1,4:1.1496249486;GZF1:1.14927929783;HSF1,2:1.14279297858;LHX3,4:1.09755260571;HOX{A4,D4}:0.943967968125;TLX1..3_NFIC{dimer}:0.859780034477;MAFB:0.810179127591;NKX3-2:0.80650696901;SRF:0.794183018035;ARID5B:0.784046440476;TBX4,5:0.774885674936;TP53:0.763958233319;ZBTB6:0.751643542081;NANOG{mouse}:0.727320772197;IKZF1:0.701817511949;HOX{A5,B5}:0.681262363729;ZNF423:0.680248960207;ZNF238:0.657013161886;TFCP2:0.639917181324;TFAP2{A,C}:0.619532645787;HAND1,2:0.602314867681;PAX1,9:0.58851094671;PITX1..3:0.587857552603;PAX4:0.57313500725;ATF6:0.561180550498;XBP1:0.559505166416;EBF1:0.521552784961;GTF2I:0.521379471319;PPARG:0.456704383278;PATZ1:0.43680295441;NKX6-1,2:0.424374267185;SPZ1:0.420269537082;CDX1,2,4:0.384902655318;FOXP1:0.379886402036;NFATC1..3:0.348111805907;GCM1,2:0.331411433795;SOX17:0.301657702915;PAX5:0.299521746809;IRF1,2:0.298927397029;RREB1:0.290208726173;EN1,2:0.286202178637;BPTF:0.284333497651;TFAP4:0.269173903087;CDC5L:0.267047961292;HIC1:0.25398313425;MAZ:0.233038950989;TFAP2B:0.224712330463;MTE{core}:0.218673076012;FOXO1,3,4:0.214450477359;FOXM1:0.158901535456;SMAD1..7,9:0.145929763849;XCPE1{core}:0.129302172517;IKZF2:0.113619243665;MTF1:0.0925247924988;YY1:0.083361083052;T:0.0707488678451;ALX1:0.0366128648945;TEF:0.0349778657848;GTF2A1,2:0.0186151265916;ONECUT1,2:0.0133618978516;PAX8:0.00879583704973;HLF:0.00834689001276;DMAP1_NCOR{1,2}_SMARC:0.0021088809745;SOX5:-0.00620281862978;BACH2:-0.0202653901257;NFE2L2:-0.0342448766744;POU5F1:-0.0457787516821;MYB:-0.0574070602301;MYFfamily:-0.0841350990287;AHR_ARNT_ARNT2:-0.13910136713;DBP:-0.155397415385;MZF1:-0.167450354101;FOXP3:-0.167578724991;NFE2:-0.172953302516;STAT2,4,6:-0.188965832525;PAX2:-0.190248675678;FOXA2:-0.226961659327;TBP:-0.271193170443;ZFP161:-0.287232279701;NR1H4:-0.301769902337;STAT5{A,B}:-0.337318135652;EGR1..3:-0.33966749917;FOS_FOS{B,L1}_JUN{B,D}:-0.349875348771;REST:-0.355685623397;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.379839439584;SNAI1..3:-0.393839124258;FOX{I1,J2}:-0.410468183431;CEBPA,B_DDIT3:-0.413270183678;ZNF148:-0.413358983447;SP1:-0.426327662162;AR:-0.435058035472;POU6F1:-0.437769017714;NFKB1_REL_RELA:-0.451570288711;HNF4A_NR2F1,2:-0.45307772912;ZNF143:-0.464813880868;NR5A1,2:-0.468392323262;TFDP1:-0.48404877044;MEF2{A,B,C,D}:-0.48517082984;ELK1,4_GABP{A,B1}:-0.48670207766;HNF1A:-0.487326143076;IRF7:-0.487511968145;RFX1:-0.491096773221;TLX2:-0.49191553425;FOSL2:-0.510958516428;POU1F1:-0.525494540806;RFX2..5_RFXANK_RFXAP:-0.528418471587;RBPJ:-0.546452648486;POU3F1..4:-0.548528568143;GFI1B:-0.557727981577;RUNX1..3:-0.559140375116;FOX{D1,D2}:-0.574923195095;GFI1:-0.576126232664;MED-1{core}:-0.580492616909;NRF1:-0.581319860082;LMO2:-0.585149075186;ADNP_IRX_SIX_ZHX:-0.598370677434;PDX1:-0.623692775334;bHLH_family:-0.637453786541;ATF4:-0.68377111266;SPI1:-0.706204756944;NFIX:-0.716894259953;E2F1..5:-0.742679242523;SPIB:-0.777848784846;ETS1,2:-0.778463889282;CREB1:-0.798402295379;HOX{A6,A7,B6,B7}:-0.816795607738;ATF5_CREB3:-0.844158991109;BREu{core}:-0.84506545911;NFIL3:-0.87413441287;FOXN1:-0.885219222103;ZEB1:-0.887697843783;PAX6:-0.892697130097;OCT4_SOX2{dimer}:-0.910568805364;SREBF1,2:-0.931774141249;ELF1,2,4:-0.936050403518;LEF1_TCF7_TCF7L1,2:-0.937653372275;NHLH1,2:-0.951650456329;ATF2:-0.961863569469;SOX2:-0.984564108433;PAX3,7:-1.04517938547;CUX2:-1.12449172286;NKX2-3_NKX2-5:-1.1397751285;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-1.15390435371;HOXA9_MEIS1:-1.23255868742;NFY{A,B,C}:-1.23888702592;TGIF1:-1.24279121128;STAT1,3:-1.25104815452;EP300:-1.32183789619;POU2F1..3:-1.349571558;MYOD1:-1.3836703195;JUN:-1.45537176292;PRRX1,2:-1.48412274992;ESRRA:-1.51967948993;RORA:-1.55852894079;SOX{8,9,10}:-1.56036800076;FOXQ1:-1.56914128863;HBP1_HMGB_SSRP1_UBTF:-1.57028336548;GATA6:-1.57219723847;FOX{F1,F2,J1}:-1.61854335132;VSX1,2:-1.6768573339;CRX:-1.68832120894;PBX1:-1.72964260891;NANOG:-1.95886553551
|top_motifs=UFEwm:3.45576589677;ALX4:3.44084096562;NKX2-2,8:3.29312062069;HMGA1,2:3.29050626169;EVI1:3.13805424835;TAL1_TCF{3,4,12}:2.57451948664;KLF4:2.34771133235;GLI1..3:2.3284872242;FOXL1:2.32389508032;NR3C1:2.23016755176;AIRE:2.18109441132;ESR1:2.13354365148;GATA4:1.85324745425;PRDM1:1.85070301798;ZIC1..3:1.82730215118;FOXD3:1.80443099375;TOPORS:1.70737718026;HES1:1.6199016451;NFE2L1:1.56741113579;ZNF384:1.46408163546;MYBL2:1.45292592858;TEAD1:1.39831979109;RXR{A,B,G}:1.39706326227;HIF1A:1.37032720376;NKX3-1:1.35822484835;NR6A1:1.31224560131;RXRA_VDR{dimer}:1.30467729591;ZBTB16:1.28489630155;HMX1:1.24929018109;NKX2-1,4:1.1496249486;GZF1:1.14927929783;HSF1,2:1.14279297858;LHX3,4:1.09755260571;HOX{A4,D4}:0.943967968125;TLX1..3_NFIC{dimer}:0.859780034477;MAFB:0.810179127591;NKX3-2:0.80650696901;SRF:0.794183018035;ARID5B:0.784046440476;TBX4,5:0.774885674936;TP53:0.763958233319;ZBTB6:0.751643542081;NANOG{mouse}:0.727320772197;IKZF1:0.701817511949;HOX{A5,B5}:0.681262363729;ZNF423:0.680248960207;ZNF238:0.657013161886;TFCP2:0.639917181324;TFAP2{A,C}:0.619532645787;HAND1,2:0.602314867681;PAX1,9:0.58851094671;PITX1..3:0.587857552603;PAX4:0.57313500725;ATF6:0.561180550498;XBP1:0.559505166416;EBF1:0.521552784961;GTF2I:0.521379471319;PPARG:0.456704383278;PATZ1:0.43680295441;NKX6-1,2:0.424374267185;SPZ1:0.420269537082;CDX1,2,4:0.384902655318;FOXP1:0.379886402036;NFATC1..3:0.348111805907;GCM1,2:0.331411433795;SOX17:0.301657702915;PAX5:0.299521746809;IRF1,2:0.298927397029;RREB1:0.290208726173;EN1,2:0.286202178637;BPTF:0.284333497651;TFAP4:0.269173903087;CDC5L:0.267047961292;HIC1:0.25398313425;MAZ:0.233038950989;TFAP2B:0.224712330463;MTE{core}:0.218673076012;FOXO1,3,4:0.214450477359;FOXM1:0.158901535456;SMAD1..7,9:0.145929763849;XCPE1{core}:0.129302172517;IKZF2:0.113619243665;MTF1:0.0925247924988;YY1:0.083361083052;T:0.0707488678451;ALX1:0.0366128648945;TEF:0.0349778657848;GTF2A1,2:0.0186151265916;ONECUT1,2:0.0133618978516;PAX8:0.00879583704973;HLF:0.00834689001276;DMAP1_NCOR{1,2}_SMARC:0.0021088809745;SOX5:-0.00620281862978;BACH2:-0.0202653901257;NFE2L2:-0.0342448766744;POU5F1:-0.0457787516821;MYB:-0.0574070602301;MYFfamily:-0.0841350990287;AHR_ARNT_ARNT2:-0.13910136713;DBP:-0.155397415385;MZF1:-0.167450354101;FOXP3:-0.167578724991;NFE2:-0.172953302516;STAT2,4,6:-0.188965832525;PAX2:-0.190248675678;FOXA2:-0.226961659327;TBP:-0.271193170443;ZFP161:-0.287232279701;NR1H4:-0.301769902337;STAT5{A,B}:-0.337318135652;EGR1..3:-0.33966749917;FOS_FOS{B,L1}_JUN{B,D}:-0.349875348771;REST:-0.355685623397;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.379839439584;SNAI1..3:-0.393839124258;FOX{I1,J2}:-0.410468183431;CEBPA,B_DDIT3:-0.413270183678;ZNF148:-0.413358983447;SP1:-0.426327662162;AR:-0.435058035472;POU6F1:-0.437769017714;NFKB1_REL_RELA:-0.451570288711;HNF4A_NR2F1,2:-0.45307772912;ZNF143:-0.464813880868;NR5A1,2:-0.468392323262;TFDP1:-0.48404877044;MEF2{A,B,C,D}:-0.48517082984;ELK1,4_GABP{A,B1}:-0.48670207766;HNF1A:-0.487326143076;IRF7:-0.487511968145;RFX1:-0.491096773221;TLX2:-0.49191553425;FOSL2:-0.510958516428;POU1F1:-0.525494540806;RFX2..5_RFXANK_RFXAP:-0.528418471587;RBPJ:-0.546452648486;POU3F1..4:-0.548528568143;GFI1B:-0.557727981577;RUNX1..3:-0.559140375116;FOX{D1,D2}:-0.574923195095;GFI1:-0.576126232664;MED-1{core}:-0.580492616909;NRF1:-0.581319860082;LMO2:-0.585149075186;ADNP_IRX_SIX_ZHX:-0.598370677434;PDX1:-0.623692775334;bHLH_family:-0.637453786541;ATF4:-0.68377111266;SPI1:-0.706204756944;NFIX:-0.716894259953;E2F1..5:-0.742679242523;SPIB:-0.777848784846;ETS1,2:-0.778463889282;CREB1:-0.798402295379;HOX{A6,A7,B6,B7}:-0.816795607738;ATF5_CREB3:-0.844158991109;BREu{core}:-0.84506545911;NFIL3:-0.87413441287;FOXN1:-0.885219222103;ZEB1:-0.887697843783;PAX6:-0.892697130097;OCT4_SOX2{dimer}:-0.910568805364;SREBF1,2:-0.931774141249;ELF1,2,4:-0.936050403518;LEF1_TCF7_TCF7L1,2:-0.937653372275;NHLH1,2:-0.951650456329;ATF2:-0.961863569469;SOX2:-0.984564108433;PAX3,7:-1.04517938547;CUX2:-1.12449172286;NKX2-3_NKX2-5:-1.1397751285;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-1.15390435371;HOXA9_MEIS1:-1.23255868742;NFY{A,B,C}:-1.23888702592;TGIF1:-1.24279121128;STAT1,3:-1.25104815452;EP300:-1.32183789619;POU2F1..3:-1.349571558;MYOD1:-1.3836703195;JUN:-1.45537176292;PRRX1,2:-1.48412274992;ESRRA:-1.51967948993;RORA:-1.55852894079;SOX{8,9,10}:-1.56036800076;FOXQ1:-1.56914128863;HBP1_HMGB_SSRP1_UBTF:-1.57028336548;GATA6:-1.57219723847;FOX{F1,F2,J1}:-1.61854335132;VSX1,2:-1.6768573339;CRX:-1.68832120894;PBX1:-1.72964260891;NANOG:-1.95886553551
|xref=
|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11934-125I8;search_select_hide=table117:FF:11934-125I8
}}
}}

Latest revision as of 18:30, 4 June 2020

Name:Olfactory epithelial cells, donor2
Species:Human (Homo sapiens)
Library ID:CNhs13817
Sample type:primary cells
Genomic View: UCSC
RefEX:Specific genes
FANTOM CAT:1, 2, 3, 4, 5, 6
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissueANATOMICAL SYSTEM
dev stageNA
sexfemale
age66
cell typeCELL MIXTURE - tissue sample
cell lineNA
companyNA
collaborationChristine Wells (University of Queensland)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot numberNA
catalog numberNA
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00005868
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs13817 CAGE DRX008385 DRR009257
Accession ID Hg19

Library idBAMCTSS
CNhs13817 DRZ000682 DRZ002067
Accession ID Hg38

Library idBAMCTSS
CNhs13817 DRZ012032 DRZ013417
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis0.0938
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma-0.0671
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair1.179
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0.277
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19-0.103
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle0.102
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140.0713
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0.445
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed-0.0432
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte-0.0667
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0.234
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus-0.252
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0.659
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40.133
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0.933
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0.472
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD80
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth0.49
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0.0713
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small-0.155
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0.434
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0.133
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal1.094
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0.651
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0.521
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0.751
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic1.245
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0.0713
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal1.236
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs13817

Jaspar motifP-value
MA0002.20.0953
MA0003.10.764
MA0004.10.221
MA0006.10.37
MA0007.10.988
MA0009.10.531
MA0014.10.51
MA0017.10.42
MA0018.23.10456e-6
MA0019.10.421
MA0024.10.00146
MA0025.14.84061e-4
MA0027.10.85
MA0028.10.0162
MA0029.10.631
MA0030.10.00128
MA0031.10.0241
MA0035.20.00848
MA0038.10.00672
MA0039.20.0102
MA0040.10.566
MA0041.10.179
MA0042.10.656
MA0043.19.14806e-6
MA0046.10.0298
MA0047.20.0544
MA0048.10.00709
MA0050.10.241
MA0051.10.459
MA0052.10.022
MA0055.10.984
MA0057.10.0856
MA0058.10.0236
MA0059.10.94
MA0060.13.83235e-12
MA0061.10.433
MA0062.24.8409e-8
MA0065.20.397
MA0066.10.242
MA0067.10.00549
MA0068.10.274
MA0069.10.171
MA0070.10.576
MA0071.10.98
MA0072.10.241
MA0073.10.563
MA0074.10.264
MA0076.13.42068e-4
MA0077.10.823
MA0078.10.829
MA0079.20.103
MA0080.21.17755e-7
MA0081.10.00722
MA0083.10.376
MA0084.10.162
MA0087.10.741
MA0088.10.467
MA0090.10.011
MA0091.10.0428
MA0092.10.201
MA0093.10.115
MA0099.26.05743e-5
MA0100.10.333
MA0101.10.0112
MA0102.20.196
MA0103.10.459
MA0104.20.0848
MA0105.10.271
MA0106.10.0396
MA0107.10.0117
MA0108.20.00656
MA0111.10.894
MA0112.25.98933e-4
MA0113.10.517
MA0114.10.508
MA0115.10.154
MA0116.10.035
MA0117.10.193
MA0119.10.00181
MA0122.10.379
MA0124.10.409
MA0125.10.229
MA0131.10.43
MA0135.10.165
MA0136.11.17521e-10
MA0137.20.00474
MA0138.20.502
MA0139.10.474
MA0140.10.00695
MA0141.10.538
MA0142.10.219
MA0143.10.91
MA0144.10.378
MA0145.10.686
MA0146.10.285
MA0147.10.364
MA0148.10.111
MA0149.10.413
MA0150.10.0227
MA0152.10.0846
MA0153.10.107
MA0154.10.282
MA0155.10.334
MA0156.11.16353e-10
MA0157.10.111
MA0159.10.291
MA0160.10.129
MA0162.10.0527
MA0163.15.95846e-5
MA0164.10.979
MA0258.10.0232
MA0259.10.658



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs13817

Novel motifP-value
10.273
100.0928
1000.63
1010.843
1020.245
1030.601
1040.846
1050.118
1060.0201
1070.0278
1080.192
1090.293
110.214
1100.266
1110.528
1120.236
1130.841
1140.0225
1150.0122
1160.036
1170.295
1180.511
1190.164
120.21
1200.0711
1210.752
1220.063
1230.525
1240.273
1250.342
1260.521
1270.96
1280.193
1290.837
130.701
1300.152
1310.525
1320.138
1330.95
1340.665
1350.935
1360.634
1370.186
1380.922
1390.765
140.345
1400.89
1410.5
1420.263
1430.819
1440.656
1450.365
1460.126
1470.249
1480.647
1490.0378
150.813
1500.298
1510.704
1520.0527
1530.716
1540.487
1550.407
1560.353
1570.32
1580.0575
1590.743
160.0105
1600.125
1610.741
1620.447
1630.975
1640.0214
1650.865
1660.0442
1670.897
1680.549
1690.00543
170.305
180.346
190.00209
20.466
200.772
210.0267
220.497
230.437
240.428
250.555
260.121
270.607
280.562
290.327
30.317
300.893
310.526
321.18936e-19
330.805
340.776
350.46
360.258
370.0327
380.507
390.292
40.455
400.858
410.536
420.69
430.469
440.044
450.707
460.132
470.56
480.479
490.951
50.864
500.816
510.78
520.878
530.568
540.379
550.204
560.828
570.561
580.767
590.0818
60.496
600.727
610.908
620.334
630.196
640.748
650.566
660.0645
670.726
680.563
690.266
70.487
700.115
710.0681
720.44
730.0302
740.479
750.157
760.497
770.0278
780.985
791.70911e-6
80.0622
800.0478
810.845
820.0136
830.413
840.404
850.03
860.705
870.567
880.174
890.143
90.969
900.994
910.583
920.21
930.86
940.176
950.258
960.894
970.967
980.434
990.00716



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs13817


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000197 (receptor cell)
0000003 (native cell)
0000548 (animal cell)
0000075 (columnar/cuboidal epithelial cell)
0000066 (epithelial cell)
0002371 (somatic cell)
0000710 (neurecto-epithelial cell)
0000255 (eukaryotic cell)
0002077 (ecto-epithelial cell)
0000098 (sensory epithelial cell)
0002167 (olfactory epithelial cell)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0200002 (olfactory epithelial cell sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000133 (neurectodermal cell)
CL:0000221 (ectodermal cell)

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