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{{f5samples
{{f5samples
|id=FF:12131-128D7
|DRA_sample_Accession=CAGE@SAMD00005398
|name=granulocyte macrophage progenitor, donor1
|accession_numbers=CAGE;DRX008082;DRR008954;DRZ000379;DRZ001764;DRZ011729;DRZ013114
|sample_id=12131
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0002371,UBERON:0001474,UBERON:0000479,UBERON:0000062,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0004765,UBERON:0010317,UBERON:0002204,UBERON:0001434,UBERON:0002390,UBERON:0002193,UBERON:0002405
|rna_tube_id=128D7
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000988,CL:0000548,CL:0002032,CL:0000763,CL:0002371,CL:0000255,CL:0000557
|rna_box=128
|rna_position=D7
|sample_cell_lot=
|sample_cell_catalog=
|sample_company=
|rna_lot_number=
|rna_catalog_number=
|sample_species=Human (Homo sapiens)
|sample_strain=
|sample_dev_stage=
|sample_tissue=bone marrow
|sample_donor(cell lot)=donor1
|sample_sex=
|sample_age=
|sample_ethnicity=
|rna_rin=
|rna_od260/230=
|rna_od260/280=
|sample_cell_type=granulocyte macrophage progenitor
|sample_cell_line=
|sample_collaboration=Lennartsson
|sample_experimental_condition=
|sample_disease=
|rna_sample_type=total RNA
|rna_extraction_protocol=
|rna_weight_ug=0.17280
|rna_concentration=0.00960
|sample_note=
|profile_hcage=CNhs12519,LSID919,release012,COMPLETED
|profile_cagescan=,,,
|profile_srnaseq=,,,
|profile_rnaseq=,,,
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000004,CL:0000012,CL:0000034,CL:0000037,CL:0000048,CL:0000049,CL:0000063,CL:0000134,CL:0000144,CL:0000219,CL:0000255,CL:0000548,CL:0000557,CL:0000566,CL:0000723,CL:0000763,CL:0000837,CL:0000988,CL:0001012,CL:0002032,CL:0002320,CL:0002371
|ancestors_in_anatomy_facet=UBERON:0000061,UBERON:0000062,UBERON:0000465,UBERON:0000467,UBERON:0000468,UBERON:0000479,UBERON:0000480,UBERON:0000922,UBERON:0000923,UBERON:0000926,UBERON:0001062,UBERON:0001434,UBERON:0001474,UBERON:0002050,UBERON:0002193,UBERON:0002204,UBERON:0002371,UBERON:0002384,UBERON:0002390,UBERON:0002405,UBERON:0002532,UBERON:0004120,UBERON:0004765,UBERON:0005423
|ancestors_in_disease_facet=
|ancestors_in_disease_facet=
|sample_description=
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000001,FF:0000070
 
|comment=
|created_by=
|creation_date=
|data_phase=2
|datafreeze_phase=2
|def=
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|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000222;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000763;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000988;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002193;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002390;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002405
|ffid_belonging_in_development=CL:0000049,CL:0000134
|fonse_cell_line=
|fonse_cell_line=
|fonse_cell_line_closure=
|fonse_cell_line_closure=
Line 67: Line 41:
|fonse_treatment=
|fonse_treatment=
|fonse_treatment_closure=
|fonse_treatment_closure=
|has_quality=
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.LQhCAGE/granulocyte%2520macrophage%2520progenitor%252c%2520donor1.CNhs12519.12131-128D7.hg19.nobarcode.bam
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.LQhCAGE/granulocyte%2520macrophage%2520progenitor%252c%2520donor1.CNhs12519.12131-128D7.hg19.ctss.bed.gz
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.LQhCAGE/granulocyte%2520macrophage%2520progenitor%252c%2520donor1.CNhs12519.12131-128D7.hg19.nobarcode.rdna.fa.gz
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.LQhCAGE/granulocyte%2520macrophage%2520progenitor%252c%2520donor1.CNhs12519.12131-128D7.hg38.nobarcode.bam
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.LQhCAGE/granulocyte%2520macrophage%2520progenitor%252c%2520donor1.CNhs12519.12131-128D7.hg38.nobarcode.ctss.bed.gz
|id=FF:12131-128D7
|is_a=EFO:0002091;;FF:0000070;;FF:0000210
|is_obsolete=
|library_id=CNhs12519
|library_id_phase_based=2:CNhs12519
|microRNAs=
|microRNAs_nn=
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;12131
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;12131
|name=granulocyte macrophage progenitor, donor1
|namespace=FANTOM5
|part_of=
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|profile_hcage=CNhs12519,LSID919,release012,COMPLETED
|profile_rnaseq=
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|rna_box=128
|rna_catalog_number=
|rna_concentration=0.0096
|rna_extraction_protocol=
|rna_lot_number=
|rna_od260/230=
|rna_od260/280=
|rna_position=D7
|rna_rin=
|rna_sample_type=total RNA
|rna_tube_id=128D7
|rna_weight_ug=0.1728
|sample_age=
|sample_category=primary cells
|sample_cell_catalog=
|sample_cell_line=
|sample_cell_lot=
|sample_cell_type=granulocyte macrophage progenitor
|sample_collaboration=Lennartsson
|sample_company=
|sample_description=
|sample_dev_stage=
|sample_disease=
|sample_donor(cell lot)=donor1
|sample_ethnicity=
|sample_experimental_condition=
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;1.73999433746956e-208!GO:0043227;membrane-bound organelle;7.0594064448837e-184!GO:0043231;intracellular membrane-bound organelle;1.1567237626541e-183!GO:0043226;organelle;1.98620462149936e-166!GO:0043229;intracellular organelle;6.6368928321514e-166!GO:0005737;cytoplasm;1.68577190434483e-113!GO:0005634;nucleus;5.3566633119539e-105!GO:0044422;organelle part;1.12407064407175e-95!GO:0044446;intracellular organelle part;3.70683653800175e-94!GO:0043170;macromolecule metabolic process;1.08660338128209e-92!GO:0044238;primary metabolic process;3.96309819743459e-92!GO:0044237;cellular metabolic process;3.29273417019755e-91!GO:0043283;biopolymer metabolic process;2.5602201782217e-79!GO:0044428;nuclear part;2.59078628189779e-69!GO:0044444;cytoplasmic part;4.038977719642e-66!GO:0043233;organelle lumen;1.19285920106926e-59!GO:0031974;membrane-enclosed lumen;1.19285920106926e-59!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;3.88860942207977e-56!GO:0005515;protein binding;1.70045196889015e-55!GO:0003723;RNA binding;1.07812916987272e-49!GO:0032991;macromolecular complex;2.44935158412697e-48!GO:0006259;DNA metabolic process;1.60517819965226e-46!GO:0000166;nucleotide binding;6.79872570916383e-45!GO:0019538;protein metabolic process;6.5445139143385e-44!GO:0031981;nuclear lumen;1.09671174165451e-43!GO:0044267;cellular protein metabolic process;1.83823911706041e-41!GO:0044260;cellular macromolecule metabolic process;4.26449199583647e-41!GO:0010467;gene expression;3.4574522329462e-40!GO:0005524;ATP binding;8.95546613564824e-38!GO:0032559;adenyl ribonucleotide binding;1.08191555577219e-37!GO:0033036;macromolecule localization;2.06495175542167e-36!GO:0030554;adenyl nucleotide binding;6.84394748844166e-36!GO:0032553;ribonucleotide binding;6.94826886974695e-36!GO:0032555;purine ribonucleotide binding;6.94826886974695e-36!GO:0043412;biopolymer modification;5.30466896176739e-35!GO:0017076;purine nucleotide binding;1.37952865456239e-34!GO:0006396;RNA processing;1.86332706792871e-34!GO:0003676;nucleic acid binding;2.87725757048037e-34!GO:0015031;protein transport;4.41872371003357e-34!GO:0016043;cellular component organization and biogenesis;1.17002894988404e-33!GO:0005739;mitochondrion;1.94830409673674e-33!GO:0008104;protein localization;2.67611107083661e-32!GO:0045184;establishment of protein localization;3.05197119237728e-32!GO:0007049;cell cycle;4.92877215004615e-31!GO:0006464;protein modification process;2.36160556925651e-30!GO:0016070;RNA metabolic process;2.05358703290142e-29!GO:0006996;organelle organization and biogenesis;2.31863965704294e-29!GO:0016071;mRNA metabolic process;4.64805543914278e-29!GO:0043234;protein complex;6.10708262849851e-29!GO:0030529;ribonucleoprotein complex;1.88690397842538e-28!GO:0043687;post-translational protein modification;4.9431244803703e-28!GO:0005654;nucleoplasm;1.01149551302468e-27!GO:0031090;organelle membrane;1.01471135020078e-27!GO:0046907;intracellular transport;3.00665911095075e-27!GO:0016874;ligase activity;2.79317107417435e-25!GO:0051276;chromosome organization and biogenesis;4.69164116770757e-25!GO:0006512;ubiquitin cycle;5.72169930127073e-25!GO:0006886;intracellular protein transport;1.1516246016118e-24!GO:0065003;macromolecular complex assembly;7.35277501954553e-24!GO:0031967;organelle envelope;7.65533845047545e-24!GO:0031975;envelope;1.37834150247443e-23!GO:0022402;cell cycle process;2.30103965145491e-23!GO:0006974;response to DNA damage stimulus;1.03083411040582e-22!GO:0044451;nucleoplasm part;4.46809095230428e-22!GO:0006397;mRNA processing;1.1363577669254e-21!GO:0005694;chromosome;2.78581056139635e-21!GO:0006325;establishment and/or maintenance of chromatin architecture;3.09251119417748e-21!GO:0022607;cellular component assembly;8.21737808233913e-21!GO:0051649;establishment of cellular localization;1.38596102035754e-20!GO:0006281;DNA repair;2.17152415012244e-20!GO:0044429;mitochondrial part;2.54645526585979e-20!GO:0016462;pyrophosphatase activity;2.88006882823273e-20!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;3.2091987806044e-20!GO:0016817;hydrolase activity, acting on acid anhydrides;3.26233920756758e-20!GO:0006323;DNA packaging;3.64063070074895e-20!GO:0051641;cellular localization;3.64063070074895e-20!GO:0017111;nucleoside-triphosphatase activity;6.73181169140986e-20!GO:0006412;translation;1.01558485402253e-19!GO:0008380;RNA splicing;1.40296410580005e-19!GO:0016740;transferase activity;4.13983950451607e-19!GO:0006260;DNA replication;5.13458042366132e-19!GO:0016568;chromatin modification;5.32058624811257e-19!GO:0000278;mitotic cell cycle;6.80496477246296e-19!GO:0043228;non-membrane-bound organelle;1.95229509382136e-18!GO:0043232;intracellular non-membrane-bound organelle;1.95229509382136e-18!GO:0008134;transcription factor binding;3.56360447910372e-18!GO:0009059;macromolecule biosynthetic process;3.93942522730483e-18!GO:0022613;ribonucleoprotein complex biogenesis and assembly;6.44365134840321e-18!GO:0044427;chromosomal part;6.56273387031379e-18!GO:0016887;ATPase activity;8.56186775616451e-18!GO:0042623;ATPase activity, coupled;1.22562936677133e-17!GO:0044265;cellular macromolecule catabolic process;2.48120564002384e-17!GO:0016772;transferase activity, transferring phosphorus-containing groups;2.75740871924634e-17!GO:0004386;helicase activity;7.32191003883818e-17!GO:0006793;phosphorus metabolic process;1.28803801030618e-16!GO:0006796;phosphate metabolic process;1.28803801030618e-16!GO:0009058;biosynthetic process;2.29069945801146e-16!GO:0005730;nucleolus;2.45244270222521e-16!GO:0022403;cell cycle phase;4.44950702273865e-16!GO:0005829;cytosol;9.05612165849039e-16!GO:0006511;ubiquitin-dependent protein catabolic process;2.20839239218088e-15!GO:0019941;modification-dependent protein catabolic process;3.20697759984749e-15!GO:0043632;modification-dependent macromolecule catabolic process;3.20697759984749e-15!GO:0051603;proteolysis involved in cellular protein catabolic process;3.78464247685754e-15!GO:0009719;response to endogenous stimulus;3.87329094929801e-15!GO:0044257;cellular protein catabolic process;6.05991188806159e-15!GO:0006913;nucleocytoplasmic transport;7.09994168988988e-15!GO:0043285;biopolymer catabolic process;7.18739696176376e-15!GO:0051169;nuclear transport;1.63615107487626e-14!GO:0016310;phosphorylation;1.9197968619986e-14!GO:0050794;regulation of cellular process;1.9844966357973e-14!GO:0016604;nuclear body;3.76165275056783e-14!GO:0044453;nuclear membrane part;5.61732169907653e-14!GO:0004674;protein serine/threonine kinase activity;7.03487974193906e-14!GO:0031965;nuclear membrane;9.41581373558318e-14!GO:0006605;protein targeting;1.21251900703638e-13!GO:0012501;programmed cell death;1.54406692999814e-13!GO:0006915;apoptosis;1.80467813031076e-13!GO:0008639;small protein conjugating enzyme activity;1.82626868163426e-13!GO:0000087;M phase of mitotic cell cycle;2.75683181909033e-13!GO:0044249;cellular biosynthetic process;2.85751310162227e-13!GO:0005681;spliceosome;3.20941101750254e-13!GO:0005643;nuclear pore;3.29480599350016e-13!GO:0009057;macromolecule catabolic process;3.34606225929645e-13!GO:0007067;mitosis;3.76095903530959e-13!GO:0051301;cell division;4.00886218539142e-13!GO:0004842;ubiquitin-protein ligase activity;4.32279998115525e-13!GO:0051726;regulation of cell cycle;4.53589875855929e-13!GO:0012505;endomembrane system;5.86331907730968e-13!GO:0005635;nuclear envelope;6.33008715152921e-13!GO:0016879;ligase activity, forming carbon-nitrogen bonds;6.5422079624691e-13!GO:0044248;cellular catabolic process;7.09907074449971e-13!GO:0006403;RNA localization;8.40660158767122e-13!GO:0008026;ATP-dependent helicase activity;1.35423028548003e-12!GO:0008219;cell death;1.35544657789097e-12!GO:0016265;death;1.35544657789097e-12!GO:0050657;nucleic acid transport;1.37111802175498e-12!GO:0051236;establishment of RNA localization;1.37111802175498e-12!GO:0050658;RNA transport;1.37111802175498e-12!GO:0000279;M phase;1.4382178995045e-12!GO:0000074;regulation of progression through cell cycle;1.55857739338333e-12!GO:0005740;mitochondrial envelope;1.8200994323939e-12!GO:0019222;regulation of metabolic process;9.17390633849535e-12!GO:0031966;mitochondrial membrane;1.22924840081678e-11!GO:0016607;nuclear speck;1.38822618273221e-11!GO:0005794;Golgi apparatus;1.45957876928924e-11!GO:0019787;small conjugating protein ligase activity;1.57471298258988e-11!GO:0016881;acid-amino acid ligase activity;2.19485803572582e-11!GO:0003712;transcription cofactor activity;3.04547335308557e-11!GO:0000785;chromatin;3.09454783498083e-11!GO:0019866;organelle inner membrane;3.09454783498083e-11!GO:0046930;pore complex;3.1940023327543e-11!GO:0030163;protein catabolic process;3.25344888550173e-11!GO:0005840;ribosome;3.67238953078307e-11!GO:0016192;vesicle-mediated transport;4.21776717101222e-11!GO:0022618;protein-RNA complex assembly;5.29780115765982e-11!GO:0016787;hydrolase activity;5.79054682566722e-11!GO:0051028;mRNA transport;6.9598687918531e-11!GO:0006457;protein folding;1.21676359078992e-10!GO:0006333;chromatin assembly or disassembly;1.26585821071079e-10!GO:0031323;regulation of cellular metabolic process;1.80154266121988e-10!GO:0006261;DNA-dependent DNA replication;2.16631013658619e-10!GO:0017038;protein import;2.24197352455482e-10!GO:0048770;pigment granule;2.56005042557095e-10!GO:0042470;melanosome;2.56005042557095e-10!GO:0016301;kinase activity;4.07807592297117e-10!GO:0008135;translation factor activity, nucleic acid binding;4.52973459118952e-10!GO:0050789;regulation of biological process;5.13774237815164e-10!GO:0031980;mitochondrial lumen;6.88625413559583e-10!GO:0005759;mitochondrial matrix;6.88625413559583e-10!GO:0006366;transcription from RNA polymerase II promoter;7.15167511288602e-10!GO:0016773;phosphotransferase activity, alcohol group as acceptor;2.09868202369911e-09!GO:0005743;mitochondrial inner membrane;2.63381520085823e-09!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;2.63381520085823e-09!GO:0006350;transcription;3.01357727043468e-09!GO:0065002;intracellular protein transport across a membrane;5.20676594779519e-09!GO:0006399;tRNA metabolic process;5.25677381921321e-09!GO:0005813;centrosome;6.3674331587883e-09!GO:0033279;ribosomal subunit;6.70316233689049e-09!GO:0044445;cytosolic part;6.94938667224427e-09!GO:0005815;microtubule organizing center;7.96870479785249e-09!GO:0005830;cytosolic ribosome (sensu Eukaryota);8.42523000166969e-09!GO:0015630;microtubule cytoskeleton;1.01547881362676e-08!GO:0019219;regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;1.05974906906846e-08!GO:0010468;regulation of gene expression;1.07091292799054e-08!GO:0051082;unfolded protein binding;1.38726274616898e-08!GO:0019899;enzyme binding;1.48113326268872e-08!GO:0008565;protein transporter activity;1.48757172838437e-08!GO:0003735;structural constituent of ribosome;1.50815634559255e-08!GO:0032446;protein modification by small protein conjugation;1.64215252918118e-08!GO:0006468;protein amino acid phosphorylation;2.36235806096885e-08!GO:0006606;protein import into nucleus;2.4285264769164e-08!GO:0016567;protein ubiquitination;2.56341328360785e-08!GO:0051170;nuclear import;3.34741453132575e-08!GO:0005819;spindle;3.54834927149208e-08!GO:0007242;intracellular signaling cascade;3.57595350097207e-08!GO:0003743;translation initiation factor activity;4.05680391151006e-08!GO:0016563;transcription activator activity;4.5905497330492e-08!GO:0006446;regulation of translational initiation;6.86421855909493e-08!GO:0042981;regulation of apoptosis;7.4952226384095e-08!GO:0065004;protein-DNA complex assembly;7.51968878808919e-08!GO:0048193;Golgi vesicle transport;8.2615057472598e-08!GO:0043067;regulation of programmed cell death;9.81474587140331e-08!GO:0006413;translational initiation;1.01539257148074e-07!GO:0016779;nucleotidyltransferase activity;1.03413852380287e-07!GO:0065009;regulation of a molecular function;1.15506299632457e-07!GO:0043566;structure-specific DNA binding;1.37539991311511e-07!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;1.40712694927261e-07!GO:0004812;aminoacyl-tRNA ligase activity;1.40712694927261e-07!GO:0016875;ligase activity, forming carbon-oxygen bonds;1.40712694927261e-07!GO:0030695;GTPase regulator activity;1.41848621330212e-07!GO:0032774;RNA biosynthetic process;1.62007474426902e-07!GO:0006461;protein complex assembly;1.80540861941753e-07!GO:0044432;endoplasmic reticulum part;1.96213768338597e-07!GO:0000151;ubiquitin ligase complex;2.00689902646104e-07!GO:0006351;transcription, DNA-dependent;2.32262965795074e-07!GO:0051329;interphase of mitotic cell cycle;2.47906560552727e-07!GO:0051325;interphase;2.76412959688887e-07!GO:0000287;magnesium ion binding;3.01355667451883e-07!GO:0003713;transcription coactivator activity;3.4260309362619e-07!GO:0007243;protein kinase cascade;3.50527017726111e-07!GO:0042254;ribosome biogenesis and assembly;3.9228533117855e-07!GO:0043038;amino acid activation;4.71144397805959e-07!GO:0006418;tRNA aminoacylation for protein translation;4.71144397805959e-07!GO:0043039;tRNA aminoacylation;4.71144397805959e-07!GO:0005768;endosome;4.94984388754701e-07!GO:0045449;regulation of transcription;5.05804266574584e-07!GO:0016564;transcription repressor activity;6.27958656622986e-07!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;6.27958656622986e-07!GO:0000398;nuclear mRNA splicing, via spliceosome;6.58917605641987e-07!GO:0000375;RNA splicing, via transesterification reactions;6.58917605641987e-07!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;6.58917605641987e-07!GO:0009056;catabolic process;6.77309082883976e-07!GO:0003677;DNA binding;7.21170953031806e-07!GO:0003697;single-stranded DNA binding;7.3323520987336e-07!GO:0065007;biological regulation;8.56455844002091e-07!GO:0045786;negative regulation of progression through cell cycle;9.90079891138736e-07!GO:0005096;GTPase activator activity;1.92275772546743e-06!GO:0005793;ER-Golgi intermediate compartment;2.13739659081945e-06!GO:0051168;nuclear export;2.14034506990662e-06!GO:0016741;transferase activity, transferring one-carbon groups;2.37268059151396e-06!GO:0008047;enzyme activator activity;2.40335280225709e-06!GO:0031324;negative regulation of cellular metabolic process;2.62391739801979e-06!GO:0008168;methyltransferase activity;3.81732698901359e-06!GO:0016481;negative regulation of transcription;3.97552034329612e-06!GO:0005083;small GTPase regulator activity;4.06773249447023e-06!GO:0006364;rRNA processing;4.20214870492702e-06!GO:0005783;endoplasmic reticulum;4.37612618764007e-06!GO:0000075;cell cycle checkpoint;4.92037292759085e-06!GO:0004672;protein kinase activity;5.59856775166783e-06!GO:0006355;regulation of transcription, DNA-dependent;6.13840974918368e-06!GO:0015935;small ribosomal subunit;6.49285384721567e-06!GO:0006119;oxidative phosphorylation;7.46481814721086e-06!GO:0048523;negative regulation of cellular process;8.2477758244068e-06!GO:0031497;chromatin assembly;1.08983984612827e-05!GO:0050790;regulation of catalytic activity;1.12309573962896e-05!GO:0016072;rRNA metabolic process;1.28623465881142e-05!GO:0000775;chromosome, pericentric region;1.35313426002504e-05!GO:0044455;mitochondrial membrane part;1.38858438362784e-05!GO:0009259;ribonucleotide metabolic process;1.44978709781425e-05!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);1.62261297854275e-05!GO:0008094;DNA-dependent ATPase activity;1.63037053923809e-05!GO:0003682;chromatin binding;1.70681124749203e-05!GO:0032508;DNA duplex unwinding;1.79648489532669e-05!GO:0032392;DNA geometric change;1.79648489532669e-05!GO:0006401;RNA catabolic process;1.936781882157e-05!GO:0003690;double-stranded DNA binding;1.97851540545722e-05!GO:0051186;cofactor metabolic process;1.98246632628609e-05!GO:0008654;phospholipid biosynthetic process;2.05271819582637e-05!GO:0005667;transcription factor complex;2.17783284765797e-05!GO:0008276;protein methyltransferase activity;2.2273142891898e-05!GO:0006402;mRNA catabolic process;2.35474080949515e-05!GO:0006916;anti-apoptosis;2.3782622669849e-05!GO:0043623;cellular protein complex assembly;2.42602959317793e-05!GO:0006163;purine nucleotide metabolic process;2.8676044998048e-05!GO:0009260;ribonucleotide biosynthetic process;2.91511449375338e-05!GO:0003724;RNA helicase activity;2.99037330643524e-05!GO:0043069;negative regulation of programmed cell death;2.99512074701276e-05!GO:0044431;Golgi apparatus part;3.01655630304771e-05!GO:0006164;purine nucleotide biosynthetic process;3.12013623650945e-05!GO:0008757;S-adenosylmethionine-dependent methyltransferase activity;3.21389576537438e-05!GO:0016279;protein-lysine N-methyltransferase activity;3.31451489759701e-05!GO:0018024;histone-lysine N-methyltransferase activity;3.31451489759701e-05!GO:0016278;lysine N-methyltransferase activity;3.31451489759701e-05!GO:0043066;negative regulation of apoptosis;3.67040112299786e-05!GO:0003684;damaged DNA binding;3.82468929968051e-05!GO:0006334;nucleosome assembly;3.99835011156741e-05!GO:0007264;small GTPase mediated signal transduction;4.46094099179714e-05!GO:0008270;zinc ion binding;4.48072211306482e-05!GO:0005788;endoplasmic reticulum lumen;4.52755594236081e-05!GO:0006357;regulation of transcription from RNA polymerase II promoter;5.00592456269501e-05!GO:0004437;inositol or phosphatidylinositol phosphatase activity;5.03979231500286e-05!GO:0051246;regulation of protein metabolic process;5.05717661444709e-05!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;5.23452533916313e-05!GO:0005773;vacuole;5.78777012450824e-05!GO:0000502;proteasome complex (sensu Eukaryota);6.25346655209534e-05!GO:0042054;histone methyltransferase activity;6.33513020475772e-05!GO:0042175;nuclear envelope-endoplasmic reticulum network;6.4101539799312e-05!GO:0040029;regulation of gene expression, epigenetic;6.65317618099191e-05!GO:0007265;Ras protein signal transduction;6.82160575032039e-05!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;7.05441602999284e-05!GO:0043414;biopolymer methylation;7.9526731984246e-05!GO:0003714;transcription corepressor activity;8.11468717644232e-05!GO:0051427;hormone receptor binding;8.3592785193796e-05!GO:0006268;DNA unwinding during replication;8.38899166343284e-05!GO:0005769;early endosome;8.96901201273149e-05!GO:0005789;endoplasmic reticulum membrane;0.000107060394078964!GO:0000118;histone deacetylase complex;0.000109695668725959!GO:0019829;cation-transporting ATPase activity;0.000109969181079488!GO:0006310;DNA recombination;0.000114663511768836!GO:0009150;purine ribonucleotide metabolic process;0.000116892313839701!GO:0046914;transition metal ion binding;0.000128126442441224!GO:0009152;purine ribonucleotide biosynthetic process;0.000132146500865293!GO:0009892;negative regulation of metabolic process;0.000147036195677514!GO:0032259;methylation;0.000147468113210051!GO:0035257;nuclear hormone receptor binding;0.000149194373777689!GO:0008170;N-methyltransferase activity;0.0001741928937036!GO:0000922;spindle pole;0.000176914851984289!GO:0006732;coenzyme metabolic process;0.00017947288580505!GO:0048519;negative regulation of biological process;0.000183230675606426!GO:0008234;cysteine-type peptidase activity;0.000188106759923305!GO:0006888;ER to Golgi vesicle-mediated transport;0.000204469912588718!GO:0000323;lytic vacuole;0.000226365776366974!GO:0005764;lysosome;0.000226365776366974!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.000266466742798366!GO:0015399;primary active transmembrane transporter activity;0.000266466742798366!GO:0003678;DNA helicase activity;0.000276207756129572!GO:0005657;replication fork;0.000280964832326254!GO:0016363;nuclear matrix;0.000343881528426989!GO:0000059;protein import into nucleus, docking;0.000371906156491283!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;0.000381464651275394!GO:0048475;coated membrane;0.000474965476030496!GO:0030117;membrane coat;0.000474965476030496!GO:0043492;ATPase activity, coupled to movement of substances;0.000515938112087705!GO:0008186;RNA-dependent ATPase activity;0.000515938112087705!GO:0000139;Golgi membrane;0.000626271275640072!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.00062906073291842!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;0.000636854483465911!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.000639050600252256!GO:0006611;protein export from nucleus;0.000714366363436792!GO:0007249;I-kappaB kinase/NF-kappaB cascade;0.000726086945574405!GO:0050136;NADH dehydrogenase (quinone) activity;0.000737546999734897!GO:0003954;NADH dehydrogenase activity;0.000737546999734897!GO:0008137;NADH dehydrogenase (ubiquinone) activity;0.000737546999734897!GO:0006302;double-strand break repair;0.000738094729970331!GO:0000184;mRNA catabolic process, nonsense-mediated decay;0.000757508672318033!GO:0005770;late endosome;0.000783600501482317!GO:0006405;RNA export from nucleus;0.000817852168878837!GO:0042802;identical protein binding;0.000834577658736977!GO:0005099;Ras GTPase activator activity;0.000856413201080179!GO:0031072;heat shock protein binding;0.000856413201080179!GO:0016044;membrane organization and biogenesis;0.000872109462001643!GO:0009117;nucleotide metabolic process;0.00090978044078639!GO:0030120;vesicle coat;0.000927623172108953!GO:0030662;coated vesicle membrane;0.000927623172108953!GO:0005746;mitochondrial respiratory chain;0.000936522704313058!GO:0007051;spindle organization and biogenesis;0.000940627922147701!GO:0015934;large ribosomal subunit;0.000964718119125935!GO:0006338;chromatin remodeling;0.000981760294761984!GO:0016569;covalent chromatin modification;0.000988044736257507!GO:0006950;response to stress;0.00105987430700889!GO:0007005;mitochondrion organization and biogenesis;0.00108086416524346!GO:0019783;small conjugating protein-specific protease activity;0.00109418850277128!GO:0008139;nuclear localization sequence binding;0.00110017094843876!GO:0030384;phosphoinositide metabolic process;0.00110017094843876!GO:0030145;manganese ion binding;0.0011131536498049!GO:0006650;glycerophospholipid metabolic process;0.00112333899548199!GO:0004527;exonuclease activity;0.00115508789095695!GO:0030258;lipid modification;0.00125163606804732!GO:0051188;cofactor biosynthetic process;0.00127174894835046!GO:0007059;chromosome segregation;0.00127174894835046!GO:0043087;regulation of GTPase activity;0.00129325639535183!GO:0000776;kinetochore;0.00133277567486791!GO:0032200;telomere organization and biogenesis;0.00133277567486791!GO:0000723;telomere maintenance;0.00133277567486791!GO:0004004;ATP-dependent RNA helicase activity;0.00149812080876546!GO:0004843;ubiquitin-specific protease activity;0.00152195285744151!GO:0030518;steroid hormone receptor signaling pathway;0.00159518044801694!GO:0005637;nuclear inner membrane;0.00166531076928257!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;0.00168856823173353!GO:0015631;tubulin binding;0.00170965151291827!GO:0003887;DNA-directed DNA polymerase activity;0.00172526085802663!GO:0016311;dephosphorylation;0.00174261769962717!GO:0003899;DNA-directed RNA polymerase activity;0.00182426215172401!GO:0009141;nucleoside triphosphate metabolic process;0.00183051349652873!GO:0042393;histone binding;0.00189836910818322!GO:0004518;nuclease activity;0.00190021486009257!GO:0015923;mannosidase activity;0.00192470568799637!GO:0051338;regulation of transferase activity;0.00195458805458387!GO:0009142;nucleoside triphosphate biosynthetic process;0.00199434411600263!GO:0009201;ribonucleoside triphosphate biosynthetic process;0.00199434411600263!GO:0000792;heterochromatin;0.00204807669804392!GO:0009199;ribonucleoside triphosphate metabolic process;0.00205483597550575!GO:0018193;peptidyl-amino acid modification;0.0021273544356279!GO:0035258;steroid hormone receptor binding;0.00214064775217131!GO:0005876;spindle microtubule;0.00227439121736161!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;0.00229816224600711!GO:0008022;protein C-terminus binding;0.00230686684226371!GO:0031202;RNA splicing factor activity, transesterification mechanism;0.00230686684226371!GO:0003729;mRNA binding;0.00230686684226371!GO:0046467;membrane lipid biosynthetic process;0.00240543206083828!GO:0016197;endosome transport;0.00259341415174395!GO:0043549;regulation of kinase activity;0.00261610408614359!GO:0004221;ubiquitin thiolesterase activity;0.00262325865671634!GO:0009060;aerobic respiration;0.00268493218971455!GO:0006352;transcription initiation;0.00276831076926953!GO:0007050;cell cycle arrest;0.00280733127012752!GO:0000082;G1/S transition of mitotic cell cycle;0.00290896339402449!GO:0016791;phosphoric monoester hydrolase activity;0.00296092531145945!GO:0045892;negative regulation of transcription, DNA-dependent;0.00313328351698573!GO:0031625;ubiquitin protein ligase binding;0.00313373335962026!GO:0000781;chromosome, telomeric region;0.00318064531211192!GO:0032318;regulation of Ras GTPase activity;0.00318064531211192!GO:0005798;Golgi-associated vesicle;0.00327592249933172!GO:0051052;regulation of DNA metabolic process;0.00328188847865584!GO:0051336;regulation of hydrolase activity;0.00338844172793967!GO:0032603;fractalkine production;0.00338844172793967!GO:0050725;positive regulation of interleukin-1 beta biosynthetic process;0.00338844172793967!GO:0050752;regulation of fractalkine biosynthetic process;0.00338844172793967!GO:0045362;positive regulation of interleukin-1 biosynthetic process;0.00338844172793967!GO:0050754;positive regulation of fractalkine biosynthetic process;0.00338844172793967!GO:0001774;microglial cell activation;0.00338844172793967!GO:0050756;fractalkine metabolic process;0.00338844172793967!GO:0005766;primary lysosome;0.00338844172793967!GO:0050751;fractalkine biosynthetic process;0.00338844172793967!GO:0042222;interleukin-1 biosynthetic process;0.00338844172793967!GO:0050722;regulation of interleukin-1 beta biosynthetic process;0.00338844172793967!GO:0045360;regulation of interleukin-1 biosynthetic process;0.00338844172793967!GO:0042582;azurophil granule;0.00338844172793967!GO:0050720;interleukin-1 beta biosynthetic process;0.00338844172793967!GO:0016788;hydrolase activity, acting on ester bonds;0.00348044660505899!GO:0006672;ceramide metabolic process;0.00355281047096044!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);0.00356848048693008!GO:0009205;purine ribonucleoside triphosphate metabolic process;0.00356881467960052!GO:0009144;purine nucleoside triphosphate metabolic process;0.00356881467960052!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;0.00359322681641319!GO:0009145;purine nucleoside triphosphate biosynthetic process;0.00359322681641319!GO:0006897;endocytosis;0.00362063585832982!GO:0010324;membrane invagination;0.00362063585832982!GO:0016790;thiolester hydrolase activity;0.00368823864334818!GO:0000245;spliceosome assembly;0.00373429884642014!GO:0008033;tRNA processing;0.00373650104734687!GO:0006270;DNA replication initiation;0.00379862977616365!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.00381648752889711!GO:0006304;DNA modification;0.00382301673698757!GO:0030964;NADH dehydrogenase complex (quinone);0.00385959769534967!GO:0045271;respiratory chain complex I;0.00385959769534967!GO:0005747;mitochondrial respiratory chain complex I;0.00385959769534967!GO:0007093;mitotic cell cycle checkpoint;0.00386958342788293!GO:0046474;glycerophospholipid biosynthetic process;0.00386958342788293!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;0.0039435095682927!GO:0044440;endosomal part;0.00394963664798629!GO:0010008;endosome membrane;0.00394963664798629!GO:0046578;regulation of Ras protein signal transduction;0.00397289641006785!GO:0006607;NLS-bearing substrate import into nucleus;0.00399618145555826!GO:0051056;regulation of small GTPase mediated signal transduction;0.00436558925548423!GO:0030522;intracellular receptor-mediated signaling pathway;0.00449061177714857!GO:0019904;protein domain specific binding;0.00452159821886662!GO:0005874;microtubule;0.00460238066208376!GO:0016251;general RNA polymerase II transcription factor activity;0.00496022231013916!GO:0016570;histone modification;0.00497806758921867!GO:0046983;protein dimerization activity;0.00526686702013652!GO:0048471;perinuclear region of cytoplasm;0.00537556995401137!GO:0045859;regulation of protein kinase activity;0.00545763893242992!GO:0042775;organelle ATP synthesis coupled electron transport;0.0057373624082508!GO:0042773;ATP synthesis coupled electron transport;0.0057373624082508!GO:0009108;coenzyme biosynthetic process;0.00578628814759658!GO:0008017;microtubule binding;0.00578628814759658!GO:0031252;leading edge;0.00578773180056198!GO:0051252;regulation of RNA metabolic process;0.00578810849384536!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;0.00583527561908151!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;0.0058842310214933!GO:0015986;ATP synthesis coupled proton transport;0.00598836959286304!GO:0015985;energy coupled proton transport, down electrochemical gradient;0.00598836959286304!GO:0030658;transport vesicle membrane;0.00598836959286304!GO:0046519;sphingoid metabolic process;0.0060107935614055!GO:0044452;nucleolar part;0.0061019568611791!GO:0044262;cellular carbohydrate metabolic process;0.00636717486599151!GO:0007088;regulation of mitosis;0.00636717486599151!GO:0006406;mRNA export from nucleus;0.00672358304491324!GO:0006383;transcription from RNA polymerase III promoter;0.00679610742040838!GO:0045935;positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.00756022980922781!GO:0015078;hydrogen ion transmembrane transporter activity;0.00757128196616131!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;0.0075713792854142!GO:0016458;gene silencing;0.00769786650383223!GO:0008632;apoptotic program;0.00772296430568798!GO:0019205;nucleobase, nucleoside, nucleotide kinase activity;0.00790624605571072!GO:0016584;nucleosome positioning;0.00791060374534005!GO:0000228;nuclear chromosome;0.0079312165932637!GO:0006284;base-excision repair;0.00806472302627139!GO:0006643;membrane lipid metabolic process;0.00825877055431984!GO:0004722;protein serine/threonine phosphatase activity;0.00877945672538072!GO:0045454;cell redox homeostasis;0.00887489783905672!GO:0006730;one-carbon compound metabolic process;0.00889292311730679!GO:0031570;DNA integrity checkpoint;0.00922263066809698!GO:0016469;proton-transporting two-sector ATPase complex;0.00924050367732872!GO:0051320;S phase;0.00943086774401923!GO:0046489;phosphoinositide biosynthetic process;0.00961373370115396!GO:0006289;nucleotide-excision repair;0.00987727976794731!GO:0007006;mitochondrial membrane organization and biogenesis;0.00995256003687324!GO:0006644;phospholipid metabolic process;0.0100158761181331!GO:0009966;regulation of signal transduction;0.0102513724977873!GO:0006367;transcription initiation from RNA polymerase II promoter;0.0103806204911748!GO:0043161;proteasomal ubiquitin-dependent protein catabolic process;0.0104005687510502!GO:0005525;GTP binding;0.0104433229711582!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.0105743904752022!GO:0046822;regulation of nucleocytoplasmic transport;0.0105947653259922!GO:0009055;electron carrier activity;0.0105947653259922!GO:0030521;androgen receptor signaling pathway;0.0105947653259922!GO:0005741;mitochondrial outer membrane;0.0110501863669377!GO:0003725;double-stranded RNA binding;0.0111580628352699!GO:0006013;mannose metabolic process;0.0112339363711921!GO:0000152;nuclear ubiquitin ligase complex;0.0114304314033939!GO:0004428;inositol or phosphatidylinositol kinase activity;0.011493990515773!GO:0007052;mitotic spindle organization and biogenesis;0.0117008674610115!GO:0006754;ATP biosynthetic process;0.0118686446768378!GO:0006753;nucleoside phosphate metabolic process;0.0118686446768378!GO:0046034;ATP metabolic process;0.0119084466557683!GO:0031982;vesicle;0.0120057980980717!GO:0009124;nucleoside monophosphate biosynthetic process;0.0120057980980717!GO:0009123;nucleoside monophosphate metabolic process;0.0120057980980717!GO:0000790;nuclear chromatin;0.0120446514266801!GO:0043506;regulation of JNK activity;0.01207849712122!GO:0044454;nuclear chromosome part;0.0127050395977575!GO:0030660;Golgi-associated vesicle membrane;0.013045062656598!GO:0005048;signal sequence binding;0.0135906760959207!GO:0007259;JAK-STAT cascade;0.0136224826561947!GO:0016566;specific transcriptional repressor activity;0.0141776243351142!GO:0005885;Arp2/3 protein complex;0.0142788416097272!GO:0004559;alpha-mannosidase activity;0.0144144164106615!GO:0044438;microbody part;0.0144774612784092!GO:0044439;peroxisomal part;0.0144774612784092!GO:0017091;AU-rich element binding;0.0145352087714694!GO:0050779;RNA destabilization;0.0145352087714694!GO:0000289;poly(A) tail shortening;0.0145352087714694!GO:0007346;regulation of progression through mitotic cell cycle;0.0147524446315584!GO:0048487;beta-tubulin binding;0.0147939866121827!GO:0009165;nucleotide biosynthetic process;0.0148248772891181!GO:0008173;RNA methyltransferase activity;0.0155232367855992!GO:0016585;chromatin remodeling complex;0.0156006103971784!GO:0006306;DNA methylation;0.0159934115378901!GO:0006305;DNA alkylation;0.0159934115378901!GO:0045815;positive regulation of gene expression, epigenetic;0.0180911572247985!GO:0047485;protein N-terminus binding;0.0181808244094754!GO:0006084;acetyl-CoA metabolic process;0.0181828939617533!GO:0031461;cullin-RING ubiquitin ligase complex;0.0187169755325453!GO:0001832;blastocyst growth;0.0189044850484951!GO:0031647;regulation of protein stability;0.0190289710483955!GO:0004197;cysteine-type endopeptidase activity;0.0190402334401584!GO:0031057;negative regulation of histone modification;0.0190402334401584!GO:0035067;negative regulation of histone acetylation;0.0190402334401584!GO:0006752;group transfer coenzyme metabolic process;0.0194663310521789!GO:0045941;positive regulation of transcription;0.0194897629449645!GO:0033116;ER-Golgi intermediate compartment membrane;0.0196052322818009!GO:0009116;nucleoside metabolic process;0.0196311010854258!GO:0030134;ER to Golgi transport vesicle;0.0201984740399197!GO:0006220;pyrimidine nucleotide metabolic process;0.0206470279643216!GO:0016780;phosphotransferase activity, for other substituted phosphate groups;0.0207207056642745!GO:0005761;mitochondrial ribosome;0.0207207056642745!GO:0000313;organellar ribosome;0.0207207056642745!GO:0043065;positive regulation of apoptosis;0.0209547446250386!GO:0060090;molecular adaptor activity;0.0209865045891092!GO:0046966;thyroid hormone receptor binding;0.0212122174514105!GO:0000910;cytokinesis;0.0213467328141356!GO:0016581;NuRD complex;0.0214259918210046!GO:0000079;regulation of cyclin-dependent protein kinase activity;0.0215281288471445!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.0215281288471445!GO:0003711;transcription elongation regulator activity;0.0215890791458909!GO:0045333;cellular respiration;0.0218872273624829!GO:0006417;regulation of translation;0.0218983608651607!GO:0031968;organelle outer membrane;0.0219794671516861!GO:0046839;phospholipid dephosphorylation;0.0229382031232208!GO:0016281;eukaryotic translation initiation factor 4F complex;0.0231052299832219!GO:0009161;ribonucleoside monophosphate metabolic process;0.023444772782479!GO:0009156;ribonucleoside monophosphate biosynthetic process;0.023444772782479!GO:0043068;positive regulation of programmed cell death;0.0236927233273313!GO:0009112;nucleobase metabolic process;0.0237622897063595!GO:0008536;Ran GTPase binding;0.0237909445190485!GO:0030118;clathrin coat;0.0237909445190485!GO:0046854;phosphoinositide phosphorylation;0.0241979575380226!GO:0031903;microbody membrane;0.0241979575380226!GO:0005778;peroxisomal membrane;0.0241979575380226!GO:0031410;cytoplasmic vesicle;0.0243478770161928!GO:0035303;regulation of dephosphorylation;0.0245411989680882!GO:0015077;monovalent inorganic cation transmembrane transporter activity;0.024633599393173!GO:0002763;positive regulation of myeloid leukocyte differentiation;0.0247271682293474!GO:0043488;regulation of mRNA stability;0.0258016236550214!GO:0043487;regulation of RNA stability;0.0258016236550214!GO:0019867;outer membrane;0.0259204390737258!GO:0031988;membrane-bound vesicle;0.0261444280611199!GO:0000084;S phase of mitotic cell cycle;0.0268410803188106!GO:0006520;amino acid metabolic process;0.0268410803188106!GO:0019206;nucleoside kinase activity;0.0270867312149062!GO:0016605;PML body;0.0280580330889471!GO:0006099;tricarboxylic acid cycle;0.0281159729576602!GO:0046356;acetyl-CoA catabolic process;0.0281159729576602!GO:0051059;NF-kappaB binding;0.028513520014841!GO:0005680;anaphase-promoting complex;0.0286834452214653!GO:0030127;COPII vesicle coat;0.0288678571702037!GO:0012507;ER to Golgi transport vesicle membrane;0.0288678571702037!GO:0051098;regulation of binding;0.0288980913916757!GO:0003756;protein disulfide isomerase activity;0.0298073067647237!GO:0016864;intramolecular oxidoreductase activity, transposing S-S bonds;0.0298073067647237!GO:0004177;aminopeptidase activity;0.0298816282675308!GO:0031124;mRNA 3'-end processing;0.03008461156976!GO:0022415;viral reproductive process;0.0314055975884314!GO:0008213;protein amino acid alkylation;0.0314055975884314!GO:0006479;protein amino acid methylation;0.0314055975884314!GO:0043021;ribonucleoprotein binding;0.0315854817677684!GO:0048096;chromatin-mediated maintenance of transcription;0.0323224299329059!GO:0043560;insulin receptor substrate binding;0.0327062531597884!GO:0009266;response to temperature stimulus;0.0328104676444916!GO:0000209;protein polyubiquitination;0.0329134698221119!GO:0005669;transcription factor TFIID complex;0.0339173555346373!GO:0000077;DNA damage checkpoint;0.0340166278731942!GO:0045893;positive regulation of transcription, DNA-dependent;0.0343937989880314!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.0346293913030076!GO:0009081;branched chain family amino acid metabolic process;0.0346946439015946!GO:0015924;mannosyl-oligosaccharide mannosidase activity;0.0351046353174262!GO:0006414;translational elongation;0.0351539992457774!GO:0009083;branched chain family amino acid catabolic process;0.0351917152659236!GO:0000123;histone acetyltransferase complex;0.0352444977735974!GO:0015266;protein channel activity;0.035698992630971!GO:0046965;retinoid X receptor binding;0.0363020364139264!GO:0046834;lipid phosphorylation;0.0373326242520537!GO:0000226;microtubule cytoskeleton organization and biogenesis;0.0376580815361466!GO:0035030;phosphoinositide 3-kinase complex, class IA;0.0377240373895892!GO:0006275;regulation of DNA replication;0.0378578873842249!GO:0000122;negative regulation of transcription from RNA polymerase II promoter;0.0379676176588063!GO:0030532;small nuclear ribonucleoprotein complex;0.0380479542179906!GO:0003702;RNA polymerase II transcription factor activity;0.0385679317504189!GO:0005097;Rab GTPase activator activity;0.0388697769891882!GO:0000307;cyclin-dependent protein kinase holoenzyme complex;0.0390468118607693!GO:0006278;RNA-dependent DNA replication;0.0396927036662925!GO:0006917;induction of apoptosis;0.0399952884899613!GO:0007034;vacuolar transport;0.0399952884899613!GO:0032313;regulation of Rab GTPase activity;0.0400725926897056!GO:0032483;regulation of Rab protein signal transduction;0.0400725926897056!GO:0032482;Rab protein signal transduction;0.0400725926897056!GO:0030331;estrogen receptor binding;0.0400725926897056!GO:0031628;opioid receptor binding;0.0400725926897056!GO:0031852;mu-type opioid receptor binding;0.0400725926897056!GO:0003924;GTPase activity;0.0402892748655516!GO:0005070;SH3/SH2 adaptor activity;0.0404931208370506!GO:0050681;androgen receptor binding;0.0407345287497233!GO:0004261;cathepsin G activity;0.0409024815612542!GO:0032561;guanyl ribonucleotide binding;0.041472950958081!GO:0019001;guanyl nucleotide binding;0.041472950958081!GO:0006595;polyamine metabolic process;0.0415781656186581!GO:0007040;lysosome organization and biogenesis;0.0425317711440367!GO:0004239;methionyl aminopeptidase activity;0.0427170550390074!GO:0051318;G1 phase;0.0434103902244306!GO:0043697;cell dedifferentiation;0.0436711209310068!GO:0043696;dedifferentiation;0.0436711209310068!GO:0051223;regulation of protein transport;0.043712560969896!GO:0007020;microtubule nucleation;0.0438164745314478!GO:0019902;phosphatase binding;0.0440965815671286!GO:0016023;cytoplasmic membrane-bound vesicle;0.04411878107415!GO:0006470;protein amino acid dephosphorylation;0.04411878107415!GO:0009615;response to virus;0.0444067768365069!GO:0004003;ATP-dependent DNA helicase activity;0.0452321944660901!GO:0005774;vacuolar membrane;0.0453752903171886!GO:0019377;glycolipid catabolic process;0.0453752903171886!GO:0042700;luteinizing hormone signaling pathway;0.0461048367190833!GO:0048160;primary follicle stage, oogenesis;0.0461048367190833!GO:0031047;RNA-mediated gene silencing;0.0463418149263486!GO:0030374;ligand-dependent nuclear receptor transcription coactivator activity;0.0463418149263486!GO:0006497;protein amino acid lipidation;0.0463418149263486!GO:0005852;eukaryotic translation initiation factor 3 complex;0.0476925295340365!GO:0009127;purine nucleoside monophosphate biosynthetic process;0.0477332410498061!GO:0009167;purine ribonucleoside monophosphate metabolic process;0.0477332410498061!GO:0009126;purine nucleoside monophosphate metabolic process;0.0477332410498061!GO:0009168;purine ribonucleoside monophosphate biosynthetic process;0.0477332410498061!GO:0012502;induction of programmed cell death;0.0479942692692333!GO:0030027;lamellipodium;0.0481613555461915!GO:0046128;purine ribonucleoside metabolic process;0.0481613555461915!GO:0042278;purine nucleoside metabolic process;0.0481613555461915!GO:0007041;lysosomal transport;0.0481613555461915!GO:0048522;positive regulation of cellular process;0.0491930752115899!GO:0047497;mitochondrion transport along microtubule;0.0491930752115899!GO:0007004;telomere maintenance via telomerase;0.0491930752115899!GO:0030041;actin filament polymerization;0.0496090078507886!GO:0016421;CoA carboxylase activity;0.0496090078507886
|sample_id=12131
|sample_note=
|sample_sex=
|sample_species=Human (Homo sapiens)
|sample_strain=
|sample_tissue=bone marrow
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|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:12131-128D7;search_select_hide=table117:FF:12131-128D7
}}
}}

Latest revision as of 18:31, 4 June 2020

Name:granulocyte macrophage progenitor, donor1
Species:Human (Homo sapiens)
Library ID:CNhs12519
Sample type:primary cells
Genomic View: UCSC
RefEX:Specific genes
FANTOM CAT:1, 2, 3, 4, 5, 6
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissuebone marrow
dev stageNA
sexNA
ageNA
cell typegranulocyte macrophage progenitor
cell lineNA
companyNA
collaborationLennartsson
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot numberNA
catalog numberNA
sample typetotal RNA
extraction protocol (Details)NA

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00005398
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs12519 CAGE DRX008082 DRR008954
Accession ID Hg19

Library idBAMCTSS
CNhs12519 DRZ000379 DRZ001764
Accession ID Hg38

Library idBAMCTSS
CNhs12519 DRZ011729 DRZ013114
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis-0.195
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma0.447
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural0.3
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD190.474
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle-1.049
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed-0.205
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte-0.375
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus-0.298
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory0.868
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD80.0888
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth-0.0766
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40.272
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small0.516
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0.262
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0.357
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0.551
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs12519

Jaspar motifP-value
MA0002.20.111
MA0003.10.956
MA0004.10.209
MA0006.10.333
MA0007.10.606
MA0009.10.749
MA0014.10.975
MA0017.10.901
MA0018.24.97156e-5
MA0019.10.467
MA0024.11.84111e-6
MA0025.12.28722e-4
MA0027.10.107
MA0028.10.331
MA0029.10.369
MA0030.10.0731
MA0031.10.236
MA0035.20.0752
MA0038.10.88
MA0039.20.523
MA0040.10.0654
MA0041.10.0858
MA0042.10.111
MA0043.13.89389e-6
MA0046.10.0104
MA0047.20.0915
MA0048.10.883
MA0050.10.138
MA0051.10.101
MA0052.10.831
MA0055.10.592
MA0057.10.661
MA0058.10.254
MA0059.10.71
MA0060.11.00921e-4
MA0061.10.136
MA0062.23.68118e-6
MA0065.20.0852
MA0066.10.0141
MA0067.10.0032
MA0068.10.118
MA0069.10.115
MA0070.10.0577
MA0071.10.891
MA0072.10.781
MA0073.10.989
MA0074.10.313
MA0076.10.0284
MA0077.10.837
MA0078.10.673
MA0079.20.0308
MA0080.24.37997e-11
MA0081.14.73384e-4
MA0083.10.0459
MA0084.10.838
MA0087.10.968
MA0088.10.324
MA0090.11.76956e-4
MA0091.10.832
MA0092.10.112
MA0093.10.162
MA0099.20.21
MA0100.11.33188e-4
MA0101.10.918
MA0102.27.49852e-4
MA0103.10.31
MA0104.20.207
MA0105.15.40494e-5
MA0106.10.0806
MA0107.10.478
MA0108.22.50496e-5
MA0111.10.282
MA0112.29.40551e-5
MA0113.10.655
MA0114.10.376
MA0115.10.414
MA0116.10.0109
MA0117.10.418
MA0119.10.0282
MA0122.10.137
MA0124.10.0965
MA0125.10.868
MA0131.10.279
MA0135.10.0277
MA0136.11.90476e-9
MA0137.20.847
MA0138.20.175
MA0139.10.0984
MA0140.10.411
MA0141.10.118
MA0142.10.83
MA0143.10.901
MA0144.10.931
MA0145.10.0723
MA0146.10.571
MA0147.10.361
MA0148.10.712
MA0149.10.944
MA0150.10.287
MA0152.10.0693
MA0153.10.571
MA0154.10.0714
MA0155.10.861
MA0156.14.87411e-7
MA0157.10.824
MA0159.10.0202
MA0160.10.564
MA0162.10.133
MA0163.10.0127
MA0164.10.982
MA0258.10.00602
MA0259.10.594



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs12519

Novel motifP-value
10.0246
100.552
1000.194
1010.797
1020.831
1030.797
1040.941
1050.981
1060.551
1070.246
1080.283
1090.359
110.111
1100.0773
1110.194
1120.644
1130.508
1140.172
1150.279
1160.134
1170.588
1180.687
1190.0508
120.745
1200.308
1210.954
1220.617
1230.0652
1240.341
1250.178
1260.415
1270.21
1280.939
1290.46
130.319
1300.542
1310.0654
1320.222
1330.636
1340.245
1350.303
1360.319
1370.0137
1380.605
1390.43
140.983
1400.929
1410.738
1420.724
1430.951
1440.474
1450.145
1460.767
1470.146
1480.0912
1490.252
150.857
1500.74
1510.618
1520.765
1530.184
1540.452
1550.0172
1560.567
1570.3
1580.251
1590.664
160.0359
1600.0865
1610.821
1620.221
1630.862
1640.616
1650.44
1660.815
1670.43
1680.395
1690.00503
170.213
180.357
190.0482
20.762
200.984
210.169
220.891
230.173
240.49
250.923
260.862
270.876
280.812
290.913
30.0727
300.963
310.523
321.95615e-4
330.354
340.615
350.33
360.345
370.212
380.454
390.329
40.695
400.234
410.574
420.411
430.126
440.0163
450.761
460.0955
470.144
480.214
490.356
50.457
500.832
510.649
520.963
530.878
540.806
550.533
560.304
570.155
580.573
590.284
60.288
600.718
610.689
620.449
630.1
640.192
650.0957
660.547
670.6
680.581
690.167
70.838
700.0176
710.0898
720.898
730.451
740.696
750.472
760.491
770.062
780.172
790.049
80.049
800.265
810.274
820.0469
830.524
840.979
850.0885
860.742
870.122
880.12
890.0135
90.723
900.658
910.344
920.0129
930.878
940.397
950.925
960.342
970.892
980.395
990.0305



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs12519


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000988 (hematopoietic cell)
0000548 (animal cell)
0002032 (hematopoietic oligopotent progenitor cell)
0000763 (myeloid cell)
0002371 (somatic cell)
0000255 (eukaryotic cell)
0000557 (granulocyte monocyte progenitor cell)

UBERON: Anatomy
0000468 (multi-cellular organism)
0002371 (bone marrow)
0001474 (bone element)
0000479 (tissue)
0000062 (organ)
0004120 (mesoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0004765 (skeletal element)
0010317 (germ layer / neural crest derived structure)
0002204 (musculoskeletal system)
0001434 (skeletal system)
0002390 (hematopoietic system)
0002193 (hemolymphoid system)
0002405 (immune system)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000070 (granulocyte macrophage progenitor cell sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000049 (common myeloid progenitor)
CL:0000134 (mesenchymal cell)

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