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{{f5samples
{{f5samples
|DRA_sample_Accession=CAGE@SAMD00005879
|accession_numbers=CAGE;DRX008079;DRR008951;DRZ000376;DRZ001761;DRZ011726;DRZ013111
|ancestors_in_anatomy_facet=
|ancestors_in_anatomy_facet=
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000066,CL:0000076,CL:0000213,CL:0000215,CL:0000255,CL:0000077
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000066,CL:0000076,CL:0000213,CL:0000215,CL:0000255,CL:0000077
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|created_by=
|created_by=
|creation_date=
|creation_date=
|datafreeze_phase=1
|data_phase=2
|datafreeze_phase=2
|def=
|def=
|expression_enrichment_score=chr2:19558373..19558392,-!p1@OSR1!1.94!225.73!OSR1;;chr11:61520075..61520136,+!p1@C11orf9!1.72!105.46!C11orf9;;chr19:58400344..58400364,-!p2@ZNF814!1.66!64.49!ZNF814;;chrX:2418949..2419024,-!p1@DHRSX,p1@ZBED1!1.51!31.38!ZBED1;;chr1:151032860..151032918,+!p1@MLLT11!1.45!312.88!MLLT11;;chr4:174451370..174451387,-!p1@HAND2!1.40!24.40!HAND2;;chr7:27183263..27183284,-!p2@HOXA5!1.36!21.79!HOXA5;;chr6:126240380..126240430,+!p2@NCOA7!1.32!50.55!NCOA7;;chr18:19749541..19749557,+!p1@GATA6!1.31!59.26!GATA6;;chr18:19749386..19749404,+!p2@GATA6!1.30!27.02!GATA6;;chr8:37963466..37963506,+!p3@ASH2L!1.30!23.53!ASH2L;;chr20:6748325..6748352,+!p1@BMP2!1.28!26.15!BMP2;;chr11:32457075..32457095,-!p1@WT1!1.27!17.43!WT1;;chr1:151032922..151032951,+!p2@MLLT11!1.23!26.15!MLLT11;;chr6:28321971..28321995,-!p1@ZNF323!1.22!15.69!ZNF323;;chr7:27183291..27183324,-!p1@HOXA5!1.22!15.69!HOXA5;;chr15:83953397..83953425,-!p1@BNC1!1.21!17.43!BNC1;;chr17:26697276..26697303,-!p2@SEBOX,p2@VTN!1.20!14.82!SEBOX;;chr16:86544113..86544145,+!p1@FOXF1!1.18!17.43!FOXF1;;chr7:27153454..27153469,-!p2@HOXA3!1.17!13.94!HOXA3;;chr3:25470156..25470227,+!p2@RARB!1.12!12.20!RARB;;chr1:151032739..151032748,+!p6@MLLT11!1.11!14.82!MLLT11;;chr12:26277817..26277863,-!p2@BHLHE41!1.10!15.69!BHLHE41;;chr4:174450089..174450153,-!p2@HAND2!1.09!11.33!HAND2;;chr11:65686802..65686818,+!p6@DRAP1!1.06!18.30!DRAP1;;chr19:22193731..22193751,-!p1@ZNF208!1.06!10.46!ZNF208;;chr8:72756637..72756664,-!p3@MSC!1.04!11.33!MSC;;chr1:151032782..151032801,+!p4@MLLT11!1.02!19.17!MLLT11;;chr14:21566731..21566836,-!p1@ZNF219!1.01!100.23!ZNF219;;chr8:72756063..72756125,-!p1@MSC!1.00!18.30!MSC;;chr6:28321909..28321965,-!p3@ZNF323!0.99!8.72!ZNF323;;chr3:25469815..25469866,+!p3@RARB!0.99!8.72!RARB;;chr6:19837592..19837621,+!p1@ID4!0.95!49.68!ID4;;chr5:139492456..139492489,+!p7@PURA!0.95!7.84!PURA;;chr20:61051039..61051057,-!p1@GATA5!0.95!7.84!GATA5;;chr17:46682321..46682362,-!p1@HOXB6!0.95!7.84!HOXB6;;chr6:126240442..126240459,+!p4@NCOA7!0.93!9.59!NCOA7;;chr8:106330656..106330684,+!p1@ZFPM2!0.92!20.05!ZFPM2;;chr19:47922750..47922795,-!p1@MEIS3!0.92!12.20!MEIS3;;chr10:51572339..51572376,+!p4@NCOA4!0.91!16.56!NCOA4;;chr11:46299539..46299620,+!p2@CREB3L1!0.91!12.20!CREB3L1;;chr8:72756667..72756736,-!p2@MSC!0.91!11.33!MSC;;chr6:126240356..126240379,+!p7@NCOA7!0.91!8.72!NCOA7;;chr5:172662197..172662216,-!p1@NKX2-5!0.90!6.97!NKX2-5;;chr7:27205106..27205134,-!p2@HOXA9!0.90!6.97!HOXA9;;chr9:96717629..96717644,-!p1@BARX1!0.90!6.97!BARX1;;chr8:106330696..106330719,+!p2@ZFPM2!0.89!8.72!ZFPM2;;chr11:46299199..46299233,+!p1@CREB3L1!0.88!35.73!CREB3L1;;chr8:37963407..37963454,+!p2@ASH2L!0.87!20.05!ASH2L;;chr12:104531823..104531849,-!p5@NFYB!0.87!13.94!NFYB;;chr17:46687959..46688007,-!p2@HOXB7!0.86!8.72!HOXB7;;chr18:45663490..45663528,-!p2@ZBTB7C!0.85!6.10!ZBTB7C;;chr2:19558327..19558334,-!p2@OSR1!0.85!6.10!OSR1;;chr7:27183191..27183214,-!p4@HOXA5!0.85!6.10!HOXA5;;chr12:26277956..26277980,-!p1@BHLHE41!0.84!22.66!BHLHE41;;chr10:51572408..51572454,+!p3@NCOA4!0.83!35.73!NCOA4;;chr11:65686732..65686756,+!p2@DRAP1!0.83!26.15!DRAP1;;chr19:58400372..58400411,-!p1@ZNF814!0.81!30.50!ZNF814;;chr9:35732514..35732530,+!p5@CREB3!0.80!7.84!CREB3;;chr6:134210243..134210257,+!p1@TCF21!0.79!5.23!TCF21;;chr7:27183114..27183138,-!p3@HOXA5!0.79!5.23!HOXA5;;chr7:27183325..27183338,-!p5@HOXA5!0.79!5.23!HOXA5;;chr7:63505799..63505904,+!p1@ZNF727!0.79!5.23!ZNF727;;chr12:54402745..54402788,+!p1@HOXC8!0.79!5.23!HOXC8;;chr17:3571863..3571881,-!p1@TAX1BP3!0.78!394.80!TAX1BP3;;chr5:92918919..92918942,+!p1@NR2F1!0.78!24.40!NR2F1;;chr6:10415276..10415341,-!p2@TFAP2A!0.77!6.10!TFAP2A;;chr17:20492136..20492165,+!p1@MEIS3P2!0.76!7.84!MEIS3P2;;chr6:1312325..1312340,+!p1@FOXQ1!0.75!7.84!FOXQ1;;chr3:25469724..25469773,+!p1@RARB!0.75!6.97!RARB;;chr6:10412600..10412637,-!p1@TFAP2A!0.74!7.84!TFAP2A;;chr7:149470540..149470596,-!p2@ZNF467!0.74!6.10!ZNF467;;chr17:46622070..46622109,-!p1@HOXB2!0.73!10.46!HOXB2;;chr6:151712922..151712942,-!p6@ZBTB2!0.73!6.10!ZBTB2;;chr7:1577899..1577943,+!p3@MAFK!0.73!4.36!MAFK;;chr7:27153428..27153440,-!p3@HOXA3!0.73!4.36!HOXA3;;chr7:27170274..27170308,-!p3@HOXA4!0.73!4.36!HOXA4;;chr7:27170359..27170381,-!p1@HOXA4!0.73!4.36!HOXA4;;chr7:27224795..27224840,-!p2@HOXA11!0.73!4.36!HOXA11;;chr8:55370487..55370503,+!p1@SOX17!0.73!4.36!SOX17;;chr12:66218904..66218913,+!p11@HMGA2!0.73!4.36!HMGA2;;chr13:45150455..45150472,-!p8@TSC22D1!0.73!4.36!TSC22D1;;chr17:26697304..26697335,-!p1@SEBOX,p1@VTN!0.73!4.36!SEBOX;;chr19:52076425..52076440,+!p2@ZNF175!0.73!4.36!ZNF175;;chr16:86600426..86600441,+!p1@FOXC2!0.72!11.33!FOXC2;;chr15:42749722..42749739,-!p2@ZFP106!0.71!7.84!ZFP106;;chr12:80085061..80085119,-!p6@PAWR!0.71!6.97!PAWR;;chr12:54447599..54447630,+!p3@HOXC4!0.71!5.23!HOXC4;;chr12:80085255..80085284,-!p9@PAWR!0.70!6.10!PAWR;;chr1:151032833..151032850,+!p3@MLLT11!0.69!9.59!MLLT11;;chr8:72756267..72756296,-!p4@MSC!0.69!6.10!MSC;;chr17:46621937..46621966,-!p2@HOXB2!0.68!11.33!HOXB2;;chr9:16870710..16870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|expression_enrichment_score=chr2:19558373..19558392,-!p1@OSR1!1.94!225.73!OSR1;;chr11:61520075..61520136,+!p1@C11orf9!1.72!105.46!C11orf9;;chr19:58400344..58400364,-!p2@ZNF814!1.66!64.49!ZNF814;;chrX:2418949..2419024,-!p1@DHRSX,p1@ZBED1!1.51!31.38!ZBED1;;chr1:151032860..151032918,+!p1@MLLT11!1.45!312.88!MLLT11;;chr4:174451370..174451387,-!p1@HAND2!1.40!24.40!HAND2;;chr7:27183263..27183284,-!p2@HOXA5!1.36!21.79!HOXA5;;chr6:126240380..126240430,+!p2@NCOA7!1.32!50.55!NCOA7;;chr18:19749541..19749557,+!p1@GATA6!1.31!59.26!GATA6;;chr18:19749386..19749404,+!p2@GATA6!1.30!27.02!GATA6;;chr8:37963466..37963506,+!p3@ASH2L!1.30!23.53!ASH2L;;chr20:6748325..6748352,+!p1@BMP2!1.28!26.15!BMP2;;chr11:32457075..32457095,-!p1@WT1!1.27!17.43!WT1;;chr1:151032922..151032951,+!p2@MLLT11!1.23!26.15!MLLT11;;chr6:28321971..28321995,-!p1@ZNF323!1.22!15.69!ZNF323;;chr7:27183291..27183324,-!p1@HOXA5!1.22!15.69!HOXA5;;chr15:83953397..83953425,-!p1@BNC1!1.21!17.43!BNC1;;chr17:26697276..26697303,-!p2@SEBOX,p2@VTN!1.20!14.82!SEBOX;;chr16:86544113..86544145,+!p1@FOXF1!1.18!17.43!FOXF1;;chr7:27153454..27153469,-!p2@HOXA3!1.17!13.94!HOXA3;;chr3:25470156..25470227,+!p2@RARB!1.12!12.20!RARB;;chr1:151032739..151032748,+!p6@MLLT11!1.11!14.82!MLLT11;;chr12:26277817..26277863,-!p2@BHLHE41!1.10!15.69!BHLHE41;;chr4:174450089..174450153,-!p2@HAND2!1.09!11.33!HAND2;;chr11:65686802..65686818,+!p6@DRAP1!1.06!18.30!DRAP1;;chr19:22193731..22193751,-!p1@ZNF208!1.06!10.46!ZNF208;;chr8:72756637..72756664,-!p3@MSC!1.04!11.33!MSC;;chr1:151032782..151032801,+!p4@MLLT11!1.02!19.17!MLLT11;;chr14:21566731..21566836,-!p1@ZNF219!1.01!100.23!ZNF219;;chr8:72756063..72756125,-!p1@MSC!1.00!18.30!MSC;;chr6:28321909..28321965,-!p3@ZNF323!0.99!8.72!ZNF323;;chr3:25469815..25469866,+!p3@RARB!0.99!8.72!RARB;;chr6:19837592..19837621,+!p1@ID4!0.95!49.68!ID4;;chr5:139492456..139492489,+!p7@PURA!0.95!7.84!PURA;;chr20:61051039..61051057,-!p1@GATA5!0.95!7.84!GATA5;;chr17:46682321..46682362,-!p1@HOXB6!0.95!7.84!HOXB6;;chr6:126240442..126240459,+!p4@NCOA7!0.93!9.59!NCOA7;;chr8:106330656..106330684,+!p1@ZFPM2!0.92!20.05!ZFPM2;;chr19:47922750..47922795,-!p1@MEIS3!0.92!12.20!MEIS3;;chr10:51572339..51572376,+!p4@NCOA4!0.91!16.56!NCOA4;;chr11:46299539..46299620,+!p2@CREB3L1!0.91!12.20!CREB3L1;;chr8:72756667..72756736,-!p2@MSC!0.91!11.33!MSC;;chr6:126240356..126240379,+!p7@NCOA7!0.91!8.72!NCOA7;;chr5:172662197..172662216,-!p1@NKX2-5!0.90!6.97!NKX2-5;;chr7:27205106..27205134,-!p2@HOXA9!0.90!6.97!HOXA9;;chr9:96717629..96717644,-!p1@BARX1!0.90!6.97!BARX1;;chr8:106330696..106330719,+!p2@ZFPM2!0.89!8.72!ZFPM2;;chr11:46299199..46299233,+!p1@CREB3L1!0.88!35.73!CREB3L1;;chr8:37963407..37963454,+!p2@ASH2L!0.87!20.05!ASH2L;;chr12:104531823..104531849,-!p5@NFYB!0.87!13.94!NFYB;;chr17:46687959..46688007,-!p2@HOXB7!0.86!8.72!HOXB7;;chr18:45663490..45663528,-!p2@ZBTB7C!0.85!6.10!ZBTB7C;;chr2:19558327..19558334,-!p2@OSR1!0.85!6.10!OSR1;;chr7:27183191..27183214,-!p4@HOXA5!0.85!6.10!HOXA5;;chr12:26277956..26277980,-!p1@BHLHE41!0.84!22.66!BHLHE41;;chr10:51572408..51572454,+!p3@NCOA4!0.83!35.73!NCOA4;;chr11:65686732..65686756,+!p2@DRAP1!0.83!26.15!DRAP1;;chr19:58400372..58400411,-!p1@ZNF814!0.81!30.50!ZNF814;;chr9:35732514..35732530,+!p5@CREB3!0.80!7.84!CREB3;;chr6:134210243..134210257,+!p1@TCF21!0.79!5.23!TCF21;;chr7:27183114..27183138,-!p3@HOXA5!0.79!5.23!HOXA5;;chr7:27183325..27183338,-!p5@HOXA5!0.79!5.23!HOXA5;;chr7:63505799..63505904,+!p1@ZNF727!0.79!5.23!ZNF727;;chr12:54402745..54402788,+!p1@HOXC8!0.79!5.23!HOXC8;;chr17:3571863..3571881,-!p1@TAX1BP3!0.78!394.80!TAX1BP3;;chr5:92918919..92918942,+!p1@NR2F1!0.78!24.40!NR2F1;;chr6:10415276..10415341,-!p2@TFAP2A!0.77!6.10!TFAP2A;;chr17:20492136..20492165,+!p1@MEIS3P2!0.76!7.84!MEIS3P2;;chr6:1312325..1312340,+!p1@FOXQ1!0.75!7.84!FOXQ1;;chr3:25469724..25469773,+!p1@RARB!0.75!6.97!RARB;;chr6:10412600..10412637,-!p1@TFAP2A!0.74!7.84!TFAP2A;;chr7:149470540..149470596,-!p2@ZNF467!0.74!6.10!ZNF467;;chr17:46622070..46622109,-!p1@HOXB2!0.73!10.46!HOXB2;;chr6:151712922..151712942,-!p6@ZBTB2!0.73!6.10!ZBTB2;;chr7:1577899..1577943,+!p3@MAFK!0.73!4.36!MAFK;;chr7:27153428..27153440,-!p3@HOXA3!0.73!4.36!HOXA3;;chr7:27170274..27170308,-!p3@HOXA4!0.73!4.36!HOXA4;;chr7:27170359..27170381,-!p1@HOXA4!0.73!4.36!HOXA4;;chr7:27224795..27224840,-!p2@HOXA11!0.73!4.36!HOXA11;;chr8:55370487..55370503,+!p1@SOX17!0.73!4.36!SOX17;;chr12:66218904..66218913,+!p11@HMGA2!0.73!4.36!HMGA2;;chr13:45150455..45150472,-!p8@TSC22D1!0.73!4.36!TSC22D1;;chr17:26697304..26697335,-!p1@SEBOX,p1@VTN!0.73!4.36!SEBOX;;chr19:52076425..52076440,+!p2@ZNF175!0.73!4.36!ZNF175;;chr16:86600426..86600441,+!p1@FOXC2!0.72!11.33!FOXC2;;chr15:42749722..42749739,-!p2@ZFP106!0.71!7.84!ZFP106;;chr12:80085061..80085119,-!p6@PAWR!0.71!6.97!PAWR;;chr12:54447599..54447630,+!p3@HOXC4!0.71!5.23!HOXC4;;chr12:80085255..80085284,-!p9@PAWR!0.70!6.10!PAWR;;chr1:151032833..151032850,+!p3@MLLT11!0.69!9.59!MLLT11;;chr8:72756267..72756296,-!p4@MSC!0.69!6.10!MSC;;chr17:46621937..46621966,-!p2@HOXB2!0.68!11.33!HOXB2;;chr9:16870710..16870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|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000066;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000076;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000077;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000213
|ffid_belonging_in_development=CL:0000222
|fonse_cell_line=
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|fonse_cell_line_closure=
Line 37: Line 42:
|fonse_treatment_closure=
|fonse_treatment_closure=
|has_quality=
|has_quality=
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.LQhCAGE/Mesothelial%2520Cells%252c%2520donor2.CNhs12197.12156-128G5.hg19.nobarcode.bam
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.LQhCAGE/Mesothelial%2520Cells%252c%2520donor2.CNhs12197.12156-128G5.hg19.ctss.bed.gz
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.LQhCAGE/Mesothelial%2520Cells%252c%2520donor2.CNhs12197.12156-128G5.hg19.nobarcode.rdna.fa.gz
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.LQhCAGE/Mesothelial%2520Cells%252c%2520donor2.CNhs12197.12156-128G5.hg38.nobarcode.bam
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.LQhCAGE/Mesothelial%2520Cells%252c%2520donor2.CNhs12197.12156-128G5.hg38.nobarcode.ctss.bed.gz
|id=FF:12156-128G5
|id=FF:12156-128G5
|is_a=EFO:0002091;;FF:0000099
|is_a=EFO:0002091;;FF:0000099
|is_obsolete=
|is_obsolete=
|library_id=CNhs12197
|library_id_phase_based=2:CNhs12197
|microRNAs=
|microRNAs_nn=
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;12156
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;12156
|name=Mesothelial Cells, donor2
|name=Mesothelial Cells, donor2
|namespace=FANTOM5
|namespace=FANTOM5
Line 45: Line 61:
|profile_cagescan=,,,
|profile_cagescan=,,,
|profile_hcage=CNhs12197,LSID976,release010,COMPLETED
|profile_hcage=CNhs12197,LSID976,release010,COMPLETED
|profile_rnaseq=,,,
|profile_rnaseq=
|profile_srnaseq=,,,
|profile_srnaseq=,,,
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|rna_box=128
|rna_box=128
|rna_catalog_number=N/A
|rna_catalog_number=N/A
Line 60: Line 79:
|rna_weight_ug=4.6
|rna_weight_ug=4.6
|sample_age=42 year old adult
|sample_age=42 year old adult
|sample_category=primary cells
|sample_cell_catalog=F-MES-F
|sample_cell_catalog=F-MES-F
|sample_cell_line=
|sample_cell_line=
Line 81: Line 101:
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|top_motifs=HOX{A5,B5}:1.98951998907;GZF1:1.6903782582;CRX:1.51404663009;NR3C1:1.45008734165;ONECUT1,2:1.27792238921;HSF1,2:1.26721948459;NKX3-1:1.19681282656;TFCP2:1.18819755956;MAFB:1.10071898097;GCM1,2:1.09852566397;ZBTB6:1.07941991073;PPARG:1.06405590578;NFE2L2:1.02476358326;POU1F1:0.998864633034;ESRRA:0.995998289215;ADNP_IRX_SIX_ZHX:0.970265544283;EBF1:0.96494803203;NFE2L1:0.936080183618;TAL1_TCF{3,4,12}:0.934513707648;bHLH_family:0.91636009015;JUN:0.911445850475;TEAD1:0.882116483044;HOX{A6,A7,B6,B7}:0.876599988189;SRF:0.874543849307;NFATC1..3:0.841895012349;GTF2A1,2:0.835087998882;ZNF148:0.805572675519;GLI1..3:0.795537714788;PAX1,9:0.774936065951;MYBL2:0.750514140849;TEF:0.691191608407;EN1,2:0.680417212073;HOX{A4,D4}:0.665585509988;TLX1..3_NFIC{dimer}:0.664206633329;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.652467528317;SMAD1..7,9:0.640521559109;LEF1_TCF7_TCF7L1,2:0.635725546855;NKX3-2:0.624699498357;MYOD1:0.618181515924;TP53:0.604667649756;MAZ:0.59657722648;NR1H4:0.594570205537;FOSL2:0.549435473624;BACH2:0.544305023377;SPZ1:0.543148414374;PRRX1,2:0.542635017829;NHLH1,2:0.495454765408;TBP:0.487325573469;GTF2I:0.486001365922;PAX5:0.461303279373;HLF:0.442643707757;NR6A1:0.436513635836;NFIX:0.436459966504;LMO2:0.400199240228;ATF6:0.396836986892;SREBF1,2:0.389697431945;NFE2:0.38954038364;AIRE:0.387950528608;HES1:0.38158040514;ELK1,4_GABP{A,B1}:0.374032545267;ZNF238:0.369212701891;PAX6:0.368784015467;HMX1:0.367599292025;SOX5:0.362544725441;NANOG:0.35095428651;GATA6:0.347545278144;XCPE1{core}:0.347009014202;TBX4,5:0.346817059839;HAND1,2:0.340984442935;HIC1:0.339323491227;HIF1A:0.313070841871;XBP1:0.312871074262;SOX2:0.29034281674;EGR1..3:0.289538986826;ZIC1..3:0.286729841523;NFIL3:0.286495690307;MTE{core}:0.28087556425;FOX{I1,J2}:0.265288603524;RXR{A,B,G}:0.246411301198;PAX4:0.217950476728;SP1:0.20682697598;PRDM1:0.195035335088;HNF1A:0.185615232933;TFAP4:0.182200165391;MEF2{A,B,C,D}:0.177315849433;GFI1B:0.170865676202;FOS_FOS{B,L1}_JUN{B,D}:0.166829352887;TFAP2{A,C}:0.155744427;HBP1_HMGB_SSRP1_UBTF:0.153498163133;MZF1:0.1503453992;STAT2,4,6:0.148571362111;FOX{D1,D2}:0.140629592818;IKZF1:0.12876985964;PATZ1:0.116525498206;SOX17:0.114375893242;TFAP2B:0.106137894958;STAT5{A,B}:0.102166711565;DBP:0.0972345552744;FOXA2:0.0701135301615;POU6F1:0.0612046684215;EVI1:0.0526414397917;ALX4:0.0343640891717;REST:0.00255243925396;IRF7:-0.00172096180043;TGIF1:-0.00235348532486;ZNF423:-0.00480554631829;ZNF143:-0.00717179568161;MTF1:-0.0243934762927;AR:-0.0254969098191;KLF4:-0.028852706271;PAX2:-0.0316314257292;NKX2-3_NKX2-5:-0.0463686209458;ZNF384:-0.0520171890729;HNF4A_NR2F1,2:-0.0548997830946;POU3F1..4:-0.0649149947429;ZFP161:-0.0835839169651;RFX1:-0.0942169991687;ATF2:-0.0972622646691;SNAI1..3:-0.102218478403;HOXA9_MEIS1:-0.125585752172;IRF1,2:-0.141962612884;FOXP3:-0.159517507427;MYFfamily:-0.164696800022;NFKB1_REL_RELA:-0.165173363512;ESR1:-0.167936357278;MED-1{core}:-0.175884884179;CEBPA,B_DDIT3:-0.200221239279;UFEwm:-0.211754406384;ETS1,2:-0.220800789263;RUNX1..3:-0.234568396732;STAT1,3:-0.266032256621;RREB1:-0.266819336974;NKX2-1,4:-0.275788686558;FOXN1:-0.282015987816;FOXO1,3,4:-0.28444206439;ALX1:-0.285049408303;PBX1:-0.292581050826;NANOG{mouse}:-0.296083440908;EP300:-0.335143909885;ARID5B:-0.357584470514;CDC5L:-0.359899304075;OCT4_SOX2{dimer}:-0.374406375898;DMAP1_NCOR{1,2}_SMARC:-0.390888684326;FOX{F1,F2,J1}:-0.3966902242;ZBTB16:-0.427413906929;RORA:-0.433620319848;NR5A1,2:-0.433994068344;SPIB:-0.466288985732;SPI1:-0.467762194472;NRF1:-0.469689234254;ZEB1:-0.484480393273;CUX2:-0.485305753271;RFX2..5_RFXANK_RFXAP:-0.498118509045;T:-0.526663636732;TLX2:-0.546231556151;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.5492876234;FOXM1:-0.574869669652;PAX8:-0.588349556426;ELF1,2,4:-0.598855366793;ATF5_CREB3:-0.600889851865;TOPORS:-0.605401243191;LHX3,4:-0.661695473074;FOXQ1:-0.686288477486;HMGA1,2:-0.706293675356;NFY{A,B,C}:-0.741048560132;SOX{8,9,10}:-0.74327415848;PAX3,7:-0.776046672213;PDX1:-0.777774203035;RXRA_VDR{dimer}:-0.787087796222;YY1:-0.802941161991;AHR_ARNT_ARNT2:-0.814986069585;NKX2-2,8:-0.955347508826;CREB1:-0.963522276627;CDX1,2,4:-0.971054139691;VSX1,2:-1.00305848481;GATA4:-1.00486030698;RBPJ:-1.06203433221;ATF4:-1.06941955272;POU2F1..3:-1.09252059055;POU5F1:-1.11453814956;PITX1..3:-1.23408575257;FOXD3:-1.26199896667;NKX6-1,2:-1.26832035918;E2F1..5:-1.35427225387;FOXP1:-1.38230538682;GFI1:-1.40131119361;BPTF:-1.40829107954;MYB:-1.42091250473;TFDP1:-1.49703757357;IKZF2:-1.6469125867;BREu{core}:-1.67236620297;FOXL1:-1.78287961537
|xref=
|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:12156-128G5;search_select_hide=table117:FF:12156-128G5
}}
}}

Latest revision as of 18:32, 4 June 2020

Name:Mesothelial Cells, donor2
Species:Human (Homo sapiens)
Library ID:CNhs12197
Sample type:primary cells
Genomic View: UCSC
RefEX:Specific genes
FANTOM CAT:1, 2, 3, 4
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissuemesothelium
dev stageNA
sexfemale
age42 year old adult
cell typemesothelial cell
cell lineNA
companyZenbio
collaborationFANTOM5 OSC CORE (contact: Al Forrest)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot numberNA
catalog numberN/A
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00005879
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs12197 CAGE DRX008079 DRR008951
Accession ID Hg19

Library idBAMCTSS
CNhs12197 DRZ000376 DRZ001761
Accession ID Hg38

Library idBAMCTSS
CNhs12197 DRZ011726 DRZ013111
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis-0.168
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma-0.471
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19-0.211
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle-0.322
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed-0.323
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte-0.449
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0.558
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus-1.025
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8-0.0381
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth0
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small-0.646
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0.851
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0.272
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0.163
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs12197

Jaspar motifP-value
MA0002.20.182
MA0003.10.473
MA0004.10.415
MA0006.10.0678
MA0007.10.88
MA0009.10.36
MA0014.10.945
MA0017.10.7
MA0018.20.00364
MA0019.10.0388
MA0024.17.1048e-13
MA0025.10.907
MA0027.10.899
MA0028.10.289
MA0029.10.176
MA0030.10.504
MA0031.10.905
MA0035.20.00468
MA0038.10.0308
MA0039.20.489
MA0040.10.302
MA0041.10.253
MA0042.10.485
MA0043.10.218
MA0046.10.835
MA0047.20.888
MA0048.10.714
MA0050.10.0193
MA0051.10.955
MA0052.10.766
MA0055.10.82
MA0057.10.272
MA0058.10.431
MA0059.10.625
MA0060.10.00383
MA0061.10.872
MA0062.20.127
MA0065.20.633
MA0066.10.193
MA0067.10.0801
MA0068.10.658
MA0069.10.881
MA0070.10.784
MA0071.10.66
MA0072.10.784
MA0073.10.867
MA0074.10.507
MA0076.10.551
MA0077.10.464
MA0078.10.649
MA0079.20.273
MA0080.20.00216
MA0081.10.0639
MA0083.10.00195
MA0084.10.663
MA0087.10.682
MA0088.10.592
MA0090.14.74557e-5
MA0091.10.886
MA0092.10.0576
MA0093.10.506
MA0099.21.30331e-13
MA0100.10.0145
MA0101.10.939
MA0102.20.37
MA0103.10.963
MA0104.20.0363
MA0105.10.893
MA0106.10.0532
MA0107.10.458
MA0108.20.00199
MA0111.10.382
MA0112.20.202
MA0113.10.249
MA0114.10.24
MA0115.10.606
MA0116.10.354
MA0117.10.381
MA0119.10.702
MA0122.10.525
MA0124.10.0644
MA0125.10.365
MA0131.10.0386
MA0135.10.616
MA0136.10.0514
MA0137.20.277
MA0138.20.107
MA0139.10.702
MA0140.10.0942
MA0141.10.728
MA0142.10.956
MA0143.10.124
MA0144.10.585
MA0145.10.0461
MA0146.10.667
MA0147.10.0175
MA0148.10.265
MA0149.10.283
MA0150.10.00291
MA0152.10.691
MA0153.10.0602
MA0154.10.211
MA0155.10.014
MA0156.10.336
MA0157.10.701
MA0159.10.256
MA0160.10.281
MA0162.10.255
MA0163.10.566
MA0164.10.558
MA0258.10.995
MA0259.10.0382



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs12197

Novel motifP-value
10.69
100.00895
1000.371
1010.493
1020.794
1030.407
1040.577
1050.259
1060.0332
1070.0378
1080.749
1090.615
110.272
1100.656
1110.0218
1120.414
1130.302
1140.422
1150.313
1160.897
1170.136
1180.854
1190.379
120.995
1200.568
1210.568
1220.37
1231.62797e-5
1240.741
1250.0387
1260.941
1270.514
1280.0925
1290.0945
130.928
1300.511
1310.166
1320.664
1330.059
1340.254
1350.686
1360.339
1370.592
1380.791
1390.269
140.707
1400.86
1410.0915
1420.814
1430.3
1440.922
1450.402
1460.295
1470.869
1480.661
1490.0537
150.149
1500.329
1510.401
1520.0101
1530.929
1540.34
1550.0437
1560.504
1570.353
1580.381
1590.488
160.288
1600.865
1610.807
1620.85
1630.0262
1640.925
1650.269
1660.611
1670.442
1680.582
1690.0804
170.335
180.23
190.496
20.205
200.132
210.11
220.137
230.0383
240.359
250.316
260.354
270.116
280.5
290.911
30.969
300.135
310.26
320.348
330.984
340.388
350.787
360.463
370.162
380.762
390.463
40.649
400.944
410.441
420.825
430.242
440.792
450.028
460.625
470.838
480.654
490.356
50.66
500.995
510.637
520.144
530.632
540.315
550.0472
560.536
570.69
580.431
590.287
60.212
600.359
610.282
620.613
630.555
640.928
650.312
660.69
670.669
680.8
690.0941
70.784
700.074
710.513
720.405
730.0301
740.472
750.444
760.503
770.00753
780.894
790.458
80.441
800.204
810.63
820.261
830.235
840.991
850.215
860.937
870.119
880.788
890.0311
90.603
900.928
910.992
920.437
930.399
940.818
950.154
960.555
970.034
980.331
990.258



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs12197


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000066 (epithelial cell)
0000076 (squamous epithelial cell)
0000213 (lining cell)
0000215 (barrier cell)
0000255 (eukaryotic cell)
0000077 (mesothelial cell)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000099 (human mesothelial cell sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000222 (mesodermal cell)

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