FF:12206-129D1: Difference between revisions

Latest revision as of 18:34, 4 June 2020

Name:	CD8+ T Cells (pluriselect), donor090612, donation2
Species:	Human (Homo sapiens)
Library ID:	CNhs12184,RDhi10018
Sample type:	primary cells
Genomic View:	UCSC
RefEX:	Specific genes
FANTOM CAT:	1, 2, 3, 4, 5, 6
CAGEd-oPOSSUM:	link
ZENBU report :	link

Additional information

Sample information

strain	NA
tissue	blood
dev stage	NA
sex	NA
age	NA
cell type	T cell, CD8+
cell line	NA
company	NA
collaboration	Matched_genome_OSC(contact:Al Forrest)
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	NA
catalog number	NA
sample type	NA
extraction protocol (Details)	NA

CAGE Accession numbers

Method		Sample accession id
RNA-Seq		SAMD00013694

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs12184		CAGE		DRX008070		DRR008942
RDhi10018		RNA-Seq		DRX012351		DRR013799

Accession ID Hg19

Library id		BAM		CTSS
CNhs12184		DRZ000367		DRZ001752
RDhi10018		DRZ003000

Accession ID Hg38

Library id		BAM		CTSS
CNhs12184		DRZ011717		DRZ013102
RDhi10018

Download raw sequence, BAM & CTSS

Hg19

Fasta	BAM	CTSS
download	download	donwload

Hg38

BAM	CTSS
download	donwload

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

Coexpression cluster	score
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral	0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate	0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural	0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial	0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel	0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS	0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils	0.168
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural	0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis	-0.165
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy	0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood	0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate	0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma	-0.224
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial	0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic	0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat	0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal	0
C113-thyroid-throat-lung-lymph-small-colon-trachea	0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma	0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus	0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea	0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal	0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula	0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD19	0
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils	0
C120-immature-salivary-tongue-skin-cervical-CD14-CD34	0
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B	0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal	0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils	0.00584
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte	0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus	0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain	0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil	0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP	0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small	0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD4	0
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar	0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin	0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived	0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma	0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis	0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum	0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal	0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic	0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal	0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal	0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen	0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen	0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B	0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair	0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast	0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis	0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal	0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell	0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral	0.0655
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal	0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum	0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue	0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small	0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast	0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung	0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular	0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate	0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid	0
C156-plasma-splenic-hereditary-B-large-xeroderma-b	0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea	0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen	0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal	0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain	0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral	0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta	0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon	0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal	0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma	0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial	0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung	0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD4	0
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral	0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma	0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage	0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet	0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye	0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes	0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose	0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils	0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural	0.39
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19	0.345
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous	0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus	0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil	0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood	0.84
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle	-0.525
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar	0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute	0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt	0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid	0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis	0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid	0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage	0.0923
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat	0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen	0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma	0
C190-colon-small-rectum-duodenum-appendix-temporal-oral	0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic	0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD4	0
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD14	0
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar	0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal	0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial	0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival	0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes	0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma	0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast	0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat	0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed	-0.236
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall	0
C202-salivary-skin-penis-tongue-uterus-cervical-immature	0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic	0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD34	0
C205-mycosis-cord-hairy-xeroderma-CD4-B-b	0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary	0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte	0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous	0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen	0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic	0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil	0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney	0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD34	0
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral	0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain	0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature	0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD34	0
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital	0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary	0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum	0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD19	0.0923
C220-Adipocyte-mature-left-breast-skin-liver-adipose	0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular	0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte	-0.375
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte	0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal	0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal	0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal	0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue	0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult	0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart	0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD14	0.0923
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung	0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis	0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum	0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF7	0
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma	0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas	0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma	0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial	0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell	0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy	0.462
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral	0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal	0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus	-0.0427
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach	0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing	0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage	0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic	0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory	0.61
C247-pons-locus-medulla-spinal-paracentral-medial-occipital	0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast	0.138
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial	0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall	0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD4	0
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue	0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma	0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum	0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris	0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast	0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla	0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral	0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric	0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing	0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole	0.139
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood	0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal	0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms	0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil	0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute	0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8	0.289
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast	0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear	0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate	0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD4	0
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung	0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth	0.162
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum	0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil	0.527
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast	0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte	0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal	0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal	0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma	0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory	0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial	0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic	0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD4	0.117
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small	-0.547
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat	0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular	0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus	0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic	0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial	0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal	0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal	0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left	0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart	0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature	0.168
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea	0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal	0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD34	0
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral	0.304
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte	0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed	0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral	0.116
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital	0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood	0.339
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala	0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal	0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils	0.362
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic	0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid	0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole	0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus	0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea	0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory	0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen	0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile	0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula	0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt	0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea	0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms	0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD133	0
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus	0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small	0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal	0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon	0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder	0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature	0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS	0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel	0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix	0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus	0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma	0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas	0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma	0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas	0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma	0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary	0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature	0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma	0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue	0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural	0.958
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H9	0
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic	0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature	0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical	0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b	0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph	0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute	0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic	0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils	0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus	0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung	0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma	0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK	0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast	0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue	0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate	0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left	0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal	0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy	0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral	0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell	0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD8	0
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea	0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal	0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD34	0
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast	0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid	0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD34	0
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic	0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon	0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma	0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma	0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic	0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived	0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic	0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left	0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen	0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair	0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole	0.0923
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular	0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma	0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid	0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix	0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain	0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole	0.84
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs12184

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	2.89832e-10
MA0003.1	MA0003.1	0.482
MA0004.1	MA0004.1	0.944
MA0006.1	MA0006.1	0.508
MA0007.1	MA0007.1	0.954
MA0009.1	MA0009.1	0.202
MA0014.1	MA0014.1	0.98
MA0017.1	MA0017.1	0.0292
MA0018.2	MA0018.2	0.431
MA0019.1	MA0019.1	0.992
MA0024.1	MA0024.1	0.219
MA0025.1	MA0025.1	0.71
MA0027.1	MA0027.1	0.929
MA0028.1	MA0028.1	1.18661e-4
MA0029.1	MA0029.1	0.697
MA0030.1	MA0030.1	0.138
MA0031.1	MA0031.1	0.00834
MA0035.2	MA0035.2	0.212
MA0038.1	MA0038.1	0.0976
MA0039.2	MA0039.2	0.898
MA0040.1	MA0040.1	0.884
MA0041.1	MA0041.1	0.861
MA0042.1	MA0042.1	0.559
MA0043.1	MA0043.1	0.325
MA0046.1	MA0046.1	0.795
MA0047.2	MA0047.2	0.175
MA0048.1	MA0048.1	0.28
MA0050.1	MA0050.1	4.61348e-9
MA0051.1	MA0051.1	6.31316e-5
MA0052.1	MA0052.1	0.00109
MA0055.1	MA0055.1	0.394
MA0057.1	MA0057.1	0.685
MA0058.1	MA0058.1	0.81
MA0059.1	MA0059.1	0.547
MA0060.1	MA0060.1	0.0437
MA0061.1	MA0061.1	0.00469
MA0062.2	MA0062.2	4.28177e-18
MA0065.2	MA0065.2	0.0386
MA0066.1	MA0066.1	0.157
MA0067.1	MA0067.1	0.643
MA0068.1	MA0068.1	0.424
MA0069.1	MA0069.1	0.747
MA0070.1	MA0070.1	0.411
MA0071.1	MA0071.1	0.696
MA0072.1	MA0072.1	0.439
MA0073.1	MA0073.1	0.797
MA0074.1	MA0074.1	0.642
MA0076.1	MA0076.1	1.18089e-7
MA0077.1	MA0077.1	0.0862
MA0078.1	MA0078.1	0.751
MA0079.2	MA0079.2	0.563
MA0080.2	MA0080.2	2.80608e-15
MA0081.1	MA0081.1	0.00427
MA0083.1	MA0083.1	0.0353
MA0084.1	MA0084.1	0.449
MA0087.1	MA0087.1	0.652
MA0088.1	MA0088.1	0.0603
MA0090.1	MA0090.1	2.86221e-4
MA0091.1	MA0091.1	0.844
MA0092.1	MA0092.1	0.921
MA0093.1	MA0093.1	0.975
MA0099.2	MA0099.2	0.0394
MA0100.1	MA0100.1	0.512
MA0101.1	MA0101.1	0.675
MA0102.2	MA0102.2	0.286
MA0103.1	MA0103.1	0.148
MA0104.2	MA0104.2	0.277
MA0105.1	MA0105.1	1.08006e-5
MA0106.1	MA0106.1	0.355
MA0107.1	MA0107.1	0.844
MA0108.2	MA0108.2	1.57164e-10
MA0111.1	MA0111.1	0.207
MA0112.2	MA0112.2	0.0863
MA0113.1	MA0113.1	0.706
MA0114.1	MA0114.1	0.271
MA0115.1	MA0115.1	0.774
MA0116.1	MA0116.1	1.02917e-5
MA0117.1	MA0117.1	0.725
MA0119.1	MA0119.1	0.715
MA0122.1	MA0122.1	0.23
MA0124.1	MA0124.1	0.491
MA0125.1	MA0125.1	0.308
MA0131.1	MA0131.1	0.603
MA0135.1	MA0135.1	0.829
MA0136.1	MA0136.1	1.19946e-27
MA0137.2	MA0137.2	0.0105
MA0138.2	MA0138.2	0.995
MA0139.1	MA0139.1	0.0103
MA0140.1	MA0140.1	0.213
MA0141.1	MA0141.1	0.984
MA0142.1	MA0142.1	0.568
MA0143.1	MA0143.1	0.377
MA0144.1	MA0144.1	0.0949
MA0145.1	MA0145.1	0.943
MA0146.1	MA0146.1	0.3
MA0147.1	MA0147.1	0.31
MA0148.1	MA0148.1	0.404
MA0149.1	MA0149.1	0.234
MA0150.1	MA0150.1	0.653
MA0152.1	MA0152.1	0.037
MA0153.1	MA0153.1	0.261
MA0154.1	MA0154.1	0.00443
MA0155.1	MA0155.1	0.769
MA0156.1	MA0156.1	1.58714e-27
MA0157.1	MA0157.1	0.00938
MA0159.1	MA0159.1	0.0574
MA0160.1	MA0160.1	0.401
MA0162.1	MA0162.1	0.906
MA0163.1	MA0163.1	3.775e-10
MA0164.1	MA0164.1	0.39
MA0258.1	MA0258.1	0.121
MA0259.1	MA0259.1	0.689

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs12184

Novel motif	Logo	P-value
1	1	0.189
10	10	0.0185
100	100	0.792
101	101	0.277
102	102	0.525
103	103	0.151
104	104	0.533
105	105	0.0874
106	106	0.511
107	107	0.243
108	108	0.645
109	109	0.0616
11	11	0.0778
110	110	0.44
111	111	0.358
112	112	0.449
113	113	0.143
114	114	0.206
115	115	0.307
116	116	0.929
117	117	0.00656
118	118	0.307
119	119	0.71
12	12	0.654
120	120	0.494
121	121	0.913
122	122	0.432
123	123	0.041
124	124	0.0963
125	125	0.699
126	126	0.262
127	127	0.294
128	128	0.635
129	129	0.359
13	13	0.65
130	130	0.751
131	131	0.784
132	132	0.838
133	133	0.753
134	134	0.753
135	135	0.249
136	136	0.934
137	137	0.0445
138	138	0.204
139	139	0.0171
14	14	0.256
140	140	0.0921
141	141	0.636
142	142	0.557
143	143	1.37755e-5
144	144	0.744
145	145	0.383
146	146	0.226
147	147	0.0179
148	148	0.114
149	149	0.883
15	15	0.0825
150	150	0.74
151	151	0.28
152	152	0.54
153	153	0.8
154	154	0.949
155	155	0.0239
156	156	0.479
157	157	0.352
158	158	0.283
159	159	0.0878
16	16	0.728
160	160	0.581
161	161	0.298
162	162	0.282
163	163	0.816
164	164	0.417
165	165	0.252
166	166	0.663
167	167	0.55
168	168	0.0991
169	169	0.445
17	17	0.742
18	18	0.603
19	19	0.656
2	2	0.538
20	20	0.738
21	21	0.309
22	22	0.781
23	23	0.947
24	24	0.407
25	25	0.0544
26	26	0.56
27	27	0.0397
28	28	0.395
29	29	0.125
3	3	0.0294
30	30	0.586
31	31	0.648
32	32	0.133
33	33	0.483
34	34	0.659
35	35	0.0722
36	36	0.0514
37	37	0.21
38	38	0.549
39	39	0.562
4	4	0.797
40	40	0.539
41	41	0.15
42	42	0.0515
43	43	0.226
44	44	0.535
45	45	0.958
46	46	0.125
47	47	0.0822
48	48	0.128
49	49	0.142
5	5	0.186
50	50	0.614
51	51	0.512
52	52	0.467
53	53	0.143
54	54	0.447
55	55	0.22
56	56	0.494
57	57	0.625
58	58	0.0327
59	59	0.259
6	6	0.96
60	60	0.245
61	61	0.131
62	62	0.0165
63	63	0.649
64	64	0.192
65	65	0.613
66	66	0.99
67	67	0.928
68	68	0.518
69	69	0.92
7	7	0.194
70	70	0.0172
71	71	0.106
72	72	0.0747
73	73	0.605
74	74	0.334
75	75	0.0356
76	76	0.295
77	77	0.698
78	78	0.161
79	79	0.408
8	8	0.878
80	80	0.00167
81	81	0.309
82	82	0.0942
83	83	0.984
84	84	0.395
85	85	0.733
86	86	0.156
87	87	0.607
88	88	0.775
89	89	0.876
9	9	0.358
90	90	0.0107
91	91	0.895
92	92	0.29
93	93	0.223
94	94	0.0625
95	95	0.0229
96	96	0.128
97	97	0.442
98	98	0.236
99	99	0.138

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs12184

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
EFO:0002091 biological replicate
FF:0000030 CD8-positive T cell sample
FF:0000210 human sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000988 (hematopoietic cell)
0000548 (animal cell)
0002371 (somatic cell)
0000542 (lymphocyte)
0000219 (motile cell)
0000738 (leukocyte)
0002087 (nongranular leukocyte)
0002242 (nucleate cell)
0000255 (eukaryotic cell)
0000791 (mature alpha-beta T cell)
0000084 (T cell)
0000789 (alpha-beta T cell)
0002419 (mature T cell)
0000625 (CD8-positive, alpha-beta T cell)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000030 (CD8-positive T cell sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
CL:0000134 (mesenchymal cell)
CL:0000051 (common lymphoid progenitor)
CL:0000790 (immature alpha-beta T cell)

@@ Line 1: / Line 1: @@
 {{f5samples
-|DRA_sample_Accession=RNA-Seq@SAMD00013694!CAGE@SAMD00005312
+|DRA_sample_Accession=RNA-Seq@SAMD00013694
-|accession_numbers=CAGE;DRX008070;DRR008942;DRZ000367;DRZ001752!RNA-Seq;DRX012351;DRR013799;DRZ003000;NA
+|accession_numbers=CAGE;DRX008070;DRR008942;DRZ000367;DRZ001752;DRZ011717;DRZ013102!RNA-Seq;DRX012351;DRR013799;DRZ003000;
 |ancestors_in_anatomy_facet=
 |ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000988,CL:0000548,CL:0002371,CL:0000542,CL:0000219,CL:0000738,CL:0002087,CL:0002242,CL:0000255,CL:0000791,CL:0000084,CL:0000789,CL:0002419,CL:0000625
@@ Line 13: / Line 13: @@
 |def=
 |expression_enrichment_score=chr2:68592406..68592424,+!p1@PLEK!2.00!99.92!PLEK;;chr5:133451294..133451310,+!p2@TCF7!1.95!87.61!TCF7;;chr17:45810594..45810608,+!p1@TBX21!1.82!65.59!TBX21;;chr3:27763807..27763822,-!p1@EOMES!1.82!65.11!EOMES;;chr2:192015701..192015743,-!p1@STAT4!1.81!85.95!STAT4;;chr3:63953435..63953499,+!p1@ATXN7!1.80!62.04!ATXN7;;chr9:117150254..117150271,-!p1@AKNA!1.72!136.86!AKNA;;chr4:109087445..109087463,-!p1@LEF1!1.72!51.62!LEF1;;chr7:50343634..50343717,+!p2@IKZF1!1.71!50.67!IKZF1;;chr1:25256756..25256774,-!p1@RUNX3!1.68!86.19!RUNX3;;chr2:231090433..231090469,+!p1@SP140!1.68!46.65!SP140;;chr2:192015750..192015793,-!p2@STAT4!1.67!61.33!STAT4;;chr5:133450365..133450444,+!p1@TCF7!1.66!194.39!TCF7;;chr2:68592394..68592405,+!p2@PLEK!1.61!39.54!PLEK;;chr17:37934365..37934387,-!p2@IKZF3!1.61!39.31!IKZF3;;chr11:47400078..47400106,-!p1@SPI1!1.55!34.57!SPI1;;chr14:75988771..75988826,+!p1@BATF!1.53!43.80!BATF;;chr19:16435625..16435682,+!p1@KLF2!1.51!950.90!KLF2;;chr7:50344251..50344288,+!p3@IKZF1!1.47!28.41!IKZF1;;chr20:50159198..50159299,-!p1@NFATC2!1.46!40.02!NFATC2;;chr1:26697243..26697258,-!p1@ZNF683!1.46!27.70!ZNF683;;chr5:133451347..133451358,+!p3@TCF7!1.45!27.23!TCF7;;chr6:106546808..106546833,+!p3@PRDM1!1.36!27.47!PRDM1;;chr19:19779619..19779670,+!p1@ZNF101!1.34!57.77!ZNF101;;chr4:109090075..109090095,-!p2@LEF1!1.34!20.84!LEF1;;chr20:56195474..56195506,-!p1@ZBP1!1.33!20.36!ZBP1;;chr4:57522166..57522260,-!p2@HOPX!1.31!22.49!HOPX;;chr3:18486354..18486377,-!p2@SATB1!1.30!23.68!SATB1;;chr2:231090471..231090504,+!p2@SP140!1.29!18.71!SP140;;chr7:50343895..50343936,+!p5@IKZF1!1.29!18.71!IKZF1;;chr15:60884706..60884743,-!p1@RORA!1.27!89.50!RORA;;chr3:71355163..71355209,-!p5@FOXP1!1.27!24.62!FOXP1;;chr7:50344289..50344323,+!p1@IKZF1!1.27!17.52!IKZF1;;chr13:74707894..74707947,-!p6@KLF12!1.26!19.18!KLF12;;chr17:37934204..37934241,-!p3@IKZF3!1.26!17.28!IKZF3;;chr13:41593425..41593480,-!p1@ELF1!1.25!105.84!ELF1;;chr10:8096772..8096787,+!p2@GATA3!1.25!19.65!GATA3;;chr3:71542615..71542644,-!p12@FOXP1!1.25!16.81!FOXP1;;chr6:391743..391759,+!p1@IRF4!1.24!16.34!IRF4;;chr10:8096631..8096660,+!p1@GATA3!1.23!19.42!GATA3;;chr4:57522598..57522664,-!p3@HOPX!1.23!16.10!HOPX;;chr3:71542684..71542720,-!p18@FOXP1!1.20!14.68!FOXP1;;chr17:38020392..38020477,-!p1@IKZF3!1.20!14.68!IKZF3;;chr8:67525443..67525459,-!p2@MYBL1!1.18!21.31!MYBL1;;chr17:37934280..37934299,-!p6@IKZF3!1.18!13.97!IKZF3;;chr11:128392273..128392308,-!p2@ETS1!1.16!57.06!ETS1;;chr11:128392085..128392232,-!p1@ETS1!1.14!427.62!ETS1;;chr11:128563948..128564003,+!p1@FLI1!1.12!146.57!FLI1;;chr17:38020557..38020572,-!p4@IKZF3!1.12!12.08!IKZF3;;chr21:36421535..36421610,-!p2@RUNX1!1.10!41.91!RUNX1;;chr14:64970670..64970712,-!p3@ZBTB25!1.08!24.15!ZBTB25;;chr4:109089901..109089930,-!p3@LEF1!1.08!11.13!LEF1;;chr17:38020516..38020544,-!p5@IKZF3!1.08!10.89!IKZF3;;chr8:60031619..60031676,-!p1@TOX!1.07!23.20!TOX;;chr6:106546731..106546755,+!p5@PRDM1!1.07!10.65!PRDM1;;chr21:36421347..36421380,-!p8@RUNX1!1.07!10.65!RUNX1;;chr6:91006518..91006570,-!p1@BACH2!1.06!24.39!BACH2;;chr1:92951607..92951661,-!p1@GFI1!1.06!10.42!GFI1;;chr4:57522674..57522699,-!p5@HOPX!1.06!10.42!HOPX;;chr2:97202991..97203043,+!p3@ARID5A!1.05!10.18!ARID5A;;chr3:71542651..71542683,-!p22@FOXP1!1.05!10.18!FOXP1;;chr14:75988831..75988847,+!p2@BATF!1.03!9.71!BATF;;chr19:38085768..38085821,+!p1@ZNF540!1.02!14.21!ZNF540;;chrX:106960285..106960299,-!p1@TSC22D3!1.01!254.06!TSC22D3;;chr16:89789271..89789291,+!p5@ZNF276!1.01!9.23!ZNF276;;chr12:54778471..54778528,-!p1@ZNF385A!1.01!9.23!ZNF385A;;chr14:69262947..69262986,-!p3@ZFP36L1!1.00!10.89!ZFP36L1;;chr11:47400062..47400077,-!p2@SPI1!1.00!9.00!SPI1;;chr17:38020481..38020506,-!p7@IKZF3!0.99!8.76!IKZF3;;chr3:18480217..18480239,-!p3@SATB1!0.98!8.52!SATB1;;chr4:109088940..109089037,-!p4@LEF1!0.97!8.29!LEF1;;chr3:71179699..71179744,-!p2@FOXP1!0.96!62.04!FOXP1;;chr19:53289995..53290050,-!p1@ZNF600!0.96!34.10!ZNF600;;chr9:3525727..3525828,-!p2@RFX3!0.96!21.07!RFX3;;chr2:178128250..178128293,-!p6@NFE2L2!0.96!20.84!NFE2L2;;chr8:67525473..67525518,-!p1@MYBL1!0.96!19.18!MYBL1;;chr4:109089573..109089585,-!p8@LEF1!0.96!8.05!LEF1;;chr16:88752889..88752921,-!p1@SNAI3!0.95!9.23!SNAI3;;chr16:79634624..79634642,-!p1@MAF!0.93!30.78!MAF;;chr7:137620650..137620677,-!p3@CREB3L2!0.93!7.58!CREB3L2;;chr7:50343864..50343888,+!p7@IKZF1!0.93!7.58!IKZF1;;chr8:72756023..72756055,-!p6@MSC!0.92!9.23!MSC;;chr4:109088089..109088101,-!p11@LEF1!0.92!7.34!LEF1;;chr2:231090344..231090361,-!p3@SP110!0.91!7.10!SP110;;chr3:18487057..18487105,-!p4@SATB1!0.91!7.10!SATB1;;chrX:49121165..49121179,-!p1@FOXP3!0.91!7.10!FOXP3;;chr20:56195525..56195556,-!p2@ZBP1!0.91!7.10!ZBP1;;chr12:54694758..54694805,-!p1@NFE2!0.90!8.52!NFE2;;chr7:50348268..50348366,+!p4@IKZF1!0.90!6.87!IKZF1;;chr19:20748574..20748599,-!p1@ZNF737!0.89!43.09!ZNF737;;chr4:185395633..185395651,-!p2@IRF2!0.89!11.13!IRF2;;chr4:81104895..81104920,+!p2@PRDM8!0.88!10.18!PRDM8;;chr16:85932760..85932775,+!p1@IRF8!0.88!6.63!IRF8;;chr7:50344144..5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+|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000084;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000542;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000625;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000738;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000789;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000988
 |ffid_belonging_in_development=CL:0000134,CL:0000051,CL:0000790
 |fonse_cell_line=
@@ Line 41: / Line 42: @@
 |fonse_treatment_closure=
 |has_quality=
+|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.LQhCAGE/CD8%252b%2520T%2520Cells%2520%2528pluriselect%2529%252c%2520donor090612%252c%2520donation2.CNhs12184.12206-129D1.hg19.nobarcode.bam
+|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.LQhCAGE/CD8%252b%2520T%2520Cells%2520%2528pluriselect%2529%252c%2520donor090612%252c%2520donation2.CNhs12184.12206-129D1.hg19.ctss.bed.gz
+|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.LQhCAGE/CD8%252b%2520T%2520Cells%2520%2528pluriselect%2529%252c%2520donor090612%252c%2520donation2.CNhs12184.12206-129D1.hg19.nobarcode.rdna.fa.gz
+|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.LQhCAGE/CD8%252b%2520T%2520Cells%2520%2528pluriselect%2529%252c%2520donor090612%252c%2520donation2.CNhs12184.12206-129D1.hg38.nobarcode.bam
+|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.LQhCAGE/CD8%252b%2520T%2520Cells%2520%2528pluriselect%2529%252c%2520donor090612%252c%2520donation2.CNhs12184.12206-129D1.hg38.nobarcode.ctss.bed.gz
 |id=FF:12206-129D1
 |is_a=EFO:0002091;;FF:0000030;;FF:0000210
 |is_obsolete=
-|library_id=CNhs12184
+|library_id=CNhs12184!RDhi10018
 |library_id_phase_based=2:CNhs12184
-|name="CD8+ T Cells (pluriselect), donor090612, donation2"
+|microRNAs=
+|microRNAs_nn=
+|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;12206
+|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;12206
+|name=CD8+ T Cells (pluriselect), donor090612, donation2
 |namespace=FANTOM5
 |part_of=
 |profile_cagescan=,,,
-|profile_hcage="CNhs12184,LSID975,release011,COMPLETED"
+|profile_hcage=CNhs12184,LSID975,release011,COMPLETED
 |profile_rnaseq=
-|profile_srnaseq=",,,"
+|profile_srnaseq=,,,
+|refex=http://refex.dbcls.jp/genelist.php?lang
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@@ Line 72: / Line 83: @@
 |sample_cell_line=
 |sample_cell_lot=090612-03
-|sample_cell_type="T cell, CD8+"
+|sample_cell_type=T cell, CD8+
 |sample_collaboration=Matched_genome_OSC(contact:Al Forrest)
 |sample_company=
@@ Line 90: / Line 101: @@
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+|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:12206-129D1;search_select_hide=table117:FF:12206-129D1
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FF:12206-129D1: Difference between revisions

From FANTOM5_SSTAR

Latest revision as of 18:34, 4 June 2020

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	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0