FF:12235-129G3: Difference between revisions
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{{f5samples | {{f5samples | ||
|ancestors_in_anatomy_facet=UBERON: | |DRA_sample_Accession=CAGE@SAMD00005437 | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL: | |accession_numbers=CAGE;DRX008537;DRR009409;DRZ000834;DRZ002219;DRZ012184;DRZ013569 | ||
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000305,UBERON:0002384,UBERON:0000479,UBERON:0004121,UBERON:0000064,UBERON:0000062,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0004923,UBERON:0005631,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0000478,UBERON:0010317,UBERON:0000158 | |||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000723,CL:0000048,CL:0000548,CL:0002320,CL:0002371,CL:0000219,CL:0000134,CL:0000349,CL:0000255,CL:0000034,CL:0002537 | |||
|ancestors_in_disease_facet= | |ancestors_in_disease_facet= | ||
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000092,FF:0000101,FF:0000001,FF:0000010 | |||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|data_phase=2 | |||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score= | |||
|fonse_cell_line= | |fonse_cell_line= | ||
|fonse_cell_line_closure= | |fonse_cell_line_closure= | ||
| Line 35: | Line 42: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/amniotic%2520membrane%2520cells%252c%2520donor1.CNhs12502.12235-129G3.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/amniotic%2520membrane%2520cells%252c%2520donor1.CNhs12502.12235-129G3.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/amniotic%2520membrane%2520cells%252c%2520donor1.CNhs12502.12235-129G3.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/amniotic%2520membrane%2520cells%252c%2520donor1.CNhs12502.12235-129G3.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/amniotic%2520membrane%2520cells%252c%2520donor1.CNhs12502.12235-129G3.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:12235-129G3 | |id=FF:12235-129G3 | ||
|is_a=EFO:0002091;;FF: | |is_a=EFO:0002091;;FF:0000010 | ||
|is_obsolete= | |||
|library_id=CNhs12502 | |||
|library_id_phase_based=2:CNhs12502 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;12235 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;12235 | |||
|name=amniotic membrane cells, donor1 | |name=amniotic membrane cells, donor1 | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
| Line 42: | Line 61: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs12502,LSID918,release012,COMPLETED | |profile_hcage=CNhs12502,LSID918,release012,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=,,, | |profile_srnaseq=,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
|repeat_enrich_byfamily=0,0,0.117288181669063,0,0.084762123621365,0,0,-0.067336296198156,0.16952424724273,0.335811175728871,-0.06532185637237,0,0,0,0.0773695777415159,0,0,0,0,0,0,0,0,0,0.310563393713366,0,0.046490866944115,0,0,0,-0.0979578962680575,0,0,-0.132956589778862,0,0,0,0,0,0,0,0,0,0,0.16952424724273,0,0.225888143006414,0,0,0,0,0,0,0,0,-0.0242150211128343,0,0,0,0,0,0,0,-0.00401062735437502,0,0,-0.097343627213097,0,0,0,0,0,0,0,0,0,0,0.0929817338882301,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0265872445201401,0,0,0,-0.0202972982685035,-0.126435279074504,0,0,0,0.0929817338882301,-0.0980353512377064,-0.0211890191318326,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0491973365480833,0,0,0,0.277917733122233,0.250523303330982,0,0,0,0,0,0 | |||
|repeat_enrich_byname=0,0,0,0,-0.0980353512377064,0,0.0929817338882301,0,0,0,0,0,0,0,0,0,0.0940027992353497,0,-0.474086218752008,0.147626718417617,0,0,-0.178213419824696,0,0,0,0,0.16952424724273,0,0,0,0,0.335766537109229,0,-0.0504125515893149,0,0,0,0,0,0.456071462355427,0,-0.0286871306789655,-0.0683442610773682,0,0,0,0,0.305144873191699,0,0.0486447634489891,-0.0827201683234173,0.48242357995792,0.21775529065339,0.0372692371070481,0,0,0,-0.576108891066969,0.0333913286204015,0,0,-0.121779851751874,-0.096587494939294,0,0,-0.221520334308905,0,0.16842553555772,-0.0604397418968705,0,0,0,0,0,0,0,0,0,0,0,0,0,0.682048712955768,0.136897807382825,0,0,0,0,0.254627611987579,0,0,-0.138709792618442,-0.11434872952526,-0.0037828072504551,-0.538148239860852,0.0335941922137162,0.12431853137903,0.00083438275777592,-0.14013341218927,-0.0202972982685035,-0.0544201154829084,0.447750385342471,0.0892200532801069,-0.0850996908618673,-0.0247289358601778,0.0816932778153765,-0.113653043994317,0.0565552364039299,-0.0886374132329804,0.462289192685734,0,0.234576363338125,0,0.885068906591405,0,0,0.367661295991423,0.267287106827639,0.0420458750943649,0.10485035707731,0.133768942733548,-0.0948371241752164,-0.0395325284566706,-0.116254778375681,0,-0.191239270811791,0,0,0,-0.0342812267667722,0.479574283272558,-0.151939769116885,0,0.129195846111404,0.0246374728108619,0,-0.285253416890325,-0.0158200464150515,0,0,-0.0193267549547324,0,0.0929817338882301,-0.00536887298268973,0,0,0.0654098007431385,0.272827705572445,0.00172080178258049,0,0.0083169548053771,0.0294449828236511,0.0215799720935726,0,0.234593568974744,0.21852611025782,0,-0.123109557353506,0,0.0516688343436327,0.296048281889418,0.198771044115719,-0.422394805391737,0.471425406170308,0.282830323251199,0.411401903442717,-0.110090249281072,0.214188374747929,-0.00838288064440863,0.0048549014129424,0,0.0407903195100745,-0.679498131621524,0.00361779568975851,-0.161956758316895,0.0423057092816394,0.0574529014865721,0,0.0729094778806971,0,-0.196927043531469,-0.010561518491107,-0.204713011242561,0.028733746640683,0.0239391425162564,-0.032269829489445,-0.0265872445201401,0.291141860941089,0.237044128116338,-0.0527656898149295,0.898921998363537,-0.150367083334639,0.315606290514348,0.0229259354735361,-0.0924985897350796,0,0.213048081148499,0,0,0.07172185179726,-0.235476037764389,0,0.123855186918585,-0.111071580043647,-0.0743438082131614,0.175170787506154,0,0,0.990363827321306,0,0.55945047591668,0.529314585068132,0.0315282925022342,-0.19307506556969,-0.160344607598526,0.046490866944115,0.146730151427567,0,0,0.650478756428634,0,-0.19210869980514,0,0.0929817338882301,-0.165119172977459,-0.116628112990133,0,0,0,-0.0779775088887015,0.0844518917722477,0,0,0,0.0899392967439005,0,0.00209259055808212,-0.0647324167972092,-0.185309082973718,0,-0.141624924498976,0,0,0,0,0,0,0,0,-0.332507620775299,-0.0316541785092965,-0.0300356817881902,0,0,0,0,0.125458271967439,-0.110254828206494,0.0929817338882301,-0.0388809726094016,0.0929817338882301,0.231943202030897,0,0,0.148435373548914,0,0,0,0,-0.057730457053664,0.309453747169699,0,0,0,-0.0423780382636651,0,0,0,0,-0.0812954638339045,0,0,-0.19043088942251,0,0.158385157413736,-0.0815818795468414,0,-0.550954542247381,-1.11569313359602,0.731248842613269,0,0,-0.168365397901657,0,0,0.251483963275875,0.0871540242770635,0,-0.000869305466685085,0,0,0,0,0.0929817338882301,0,0.171732428386192,0.0929817338882301,0,0,0,0,0,0,0,0,0,0,0.323430033259078,-0.0922240566585104,0.120287192814809,0,0,0,0,0,0,0.286205628983133,0.196409381711372,0,0,0,0,0,0,0,0,-0.301901692420512,0,0,0,0,0,-0.00401062735437502,0,0,0,0.234576363338125,-0.22362544663297,0,0,0.335811175728871,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0303373521472176,0.30469907810522,0,0.0929817338882301,0,0,0,0.16952424724273,0,0.486710395047743,0,0.0929817338882301,0,0,1.48465014689511,0.16952424724273,0,0,0.129779978548969,0,-0.067336296198156,0,0,0.16952424724273,0,0,0,0.084762123621365,0,0,0,0.0929817338882301,0,0,0,0,0,0,0,0,0,0,0.100642193441009,0,0,0,0,0,0.310924855639544,0,0,0,0,0,0,-0.031340424028527,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0842030029856295,0,0,0,0,0,0,0,-0.0979578962680575,0,0,0.0774914374422037,0,0,0,0,0,0,-0.0534004773185845,0.467979765807973,-0.0137341534190964,0,0,0,-0.054385572482455,0,0,0.0357423229332425,0,0.594198761937277,0,0,0,0,0,0,0,0,0.0929817338882301,0,0,0.0929817338882301,0,0,0,0,0,0,0,0,0,0,0.55945047591668,0,0,0,0,0,0,0,0,0,0.310563393713366,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.291141860941089,0,0,0.16952424724273,0,0,0,0,0,0,-0.0340113632754165,0.0929817338882301,0,0,0,0,0,0,0.0929817338882301,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0800184682686384,0,0,0,-0.213086229657044,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.255547282405784,0,0,0,0,0,0,0,0,0.16952424724273,0,0,0,0,-0.0482220752390542,0,0.206765228711061,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.209322367994798,0,0,0,0,-0.0476371106609188,0,0.046490866944115,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,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| |||
|rna_box=129 | |rna_box=129 | ||
|rna_catalog_number= | |rna_catalog_number= | ||
| Line 57: | Line 79: | ||
|rna_weight_ug=5.64921 | |rna_weight_ug=5.64921 | ||
|sample_age= | |sample_age= | ||
|sample_category=primary cells | |||
|sample_cell_catalog= | |sample_cell_catalog= | ||
|sample_cell_line= | |sample_cell_line= | ||
| Line 69: | Line 92: | ||
|sample_ethnicity= | |sample_ethnicity= | ||
|sample_experimental_condition= | |sample_experimental_condition= | ||
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;5.23055146942248e-211!GO:0005737;cytoplasm;3.91273731762599e-172!GO:0043226;organelle;2.92548858726553e-159!GO:0043229;intracellular organelle;8.08201051040527e-159!GO:0043231;intracellular membrane-bound organelle;2.46333848691356e-151!GO:0043227;membrane-bound organelle;4.00221341209164e-151!GO:0044444;cytoplasmic part;1.86349526157738e-112!GO:0044422;organelle part;1.04544745933757e-109!GO:0044446;intracellular organelle part;2.79658129441976e-108!GO:0005515;protein binding;4.31380028187021e-81!GO:0032991;macromolecular complex;9.35827232808081e-77!GO:0044238;primary metabolic process;1.05565175114176e-74!GO:0043170;macromolecule metabolic process;6.06282445803713e-72!GO:0044237;cellular metabolic process;1.65170208677537e-70!GO:0030529;ribonucleoprotein complex;4.41792210268921e-63!GO:0003723;RNA binding;1.4620897533492e-57!GO:0005634;nucleus;3.01037777161758e-56!GO:0019538;protein metabolic process;1.97905703711953e-53!GO:0043233;organelle lumen;4.78929796978023e-52!GO:0031974;membrane-enclosed lumen;4.78929796978023e-52!GO:0044428;nuclear part;5.90097291136532e-50!GO:0044267;cellular protein metabolic process;3.19330282600796e-46!GO:0044260;cellular macromolecule metabolic process;7.635500117927e-46!GO:0031090;organelle membrane;1.23979878842251e-45!GO:0033036;macromolecule localization;2.12887070168478e-45!GO:0015031;protein transport;2.05279072203713e-44!GO:0005739;mitochondrion;3.50043695637498e-44!GO:0008104;protein localization;9.44816007430609e-43!GO:0045184;establishment of protein localization;3.62742920197624e-42!GO:0006412;translation;1.09834353646422e-41!GO:0043234;protein complex;3.34493937242984e-40!GO:0016043;cellular component organization and biogenesis;7.35143940199571e-40!GO:0043283;biopolymer metabolic process;5.04771011194767e-39!GO:0005840;ribosome;5.75107421986181e-38!GO:0010467;gene expression;4.49233230204795e-34!GO:0006396;RNA processing;6.92997087072686e-34!GO:0005829;cytosol;1.10433856155266e-33!GO:0003735;structural constituent of ribosome;1.49804172921504e-33!GO:0031981;nuclear lumen;4.68729617397045e-32!GO:0044429;mitochondrial part;3.15280255393277e-31!GO:0031967;organelle envelope;5.05932291055073e-31!GO:0031975;envelope;1.13234443307707e-30!GO:0009059;macromolecule biosynthetic process;1.33185251970245e-30!GO:0033279;ribosomal subunit;2.27491988307e-30!GO:0065003;macromolecular complex assembly;2.66502975382777e-29!GO:0016071;mRNA metabolic process;3.12785593591076e-29!GO:0009058;biosynthetic process;3.78720413305224e-29!GO:0046907;intracellular transport;4.32805532868716e-29!GO:0008380;RNA splicing;4.08423026684559e-28!GO:0044249;cellular biosynthetic process;1.1523151241232e-27!GO:0022607;cellular component assembly;3.44581764254657e-27!GO:0006886;intracellular protein transport;5.50842932681624e-27!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;4.35833088006029e-26!GO:0005830;cytosolic ribosome (sensu Eukaryota);2.4674736215195e-25!GO:0006397;mRNA processing;2.93970173627521e-25!GO:0043228;non-membrane-bound organelle;2.54316859120056e-24!GO:0043232;intracellular non-membrane-bound organelle;2.54316859120056e-24!GO:0022613;ribonucleoprotein complex biogenesis and assembly;2.00280242288629e-23!GO:0044445;cytosolic part;5.41214538337458e-23!GO:0005740;mitochondrial envelope;1.06181265646984e-21!GO:0012505;endomembrane system;8.11444815190462e-21!GO:0006996;organelle organization and biogenesis;8.64834620941176e-21!GO:0031966;mitochondrial membrane;2.29974072507824e-20!GO:0005654;nucleoplasm;6.90199896581251e-20!GO:0005681;spliceosome;7.15079812747043e-20!GO:0019866;organelle inner membrane;4.05961105297034e-19!GO:0005794;Golgi apparatus;4.83889735286071e-19!GO:0051641;cellular localization;5.62983081654734e-19!GO:0051649;establishment of cellular localization;1.1301180188151e-18!GO:0006512;ubiquitin cycle;2.21411540465466e-18!GO:0005783;endoplasmic reticulum;3.37046844695323e-18!GO:0006119;oxidative phosphorylation;3.67908989230161e-18!GO:0022618;protein-RNA complex assembly;4.16318277038506e-18!GO:0005743;mitochondrial inner membrane;4.82310562123561e-18!GO:0008134;transcription factor binding;6.48559926679886e-18!GO:0006457;protein folding;1.29594791334323e-17!GO:0043412;biopolymer modification;5.12890714295826e-17!GO:0051603;proteolysis involved in cellular protein catabolic process;6.15142237937939e-17!GO:0003676;nucleic acid binding;6.26384963795746e-17!GO:0044451;nucleoplasm part;8.77600106274349e-17!GO:0044455;mitochondrial membrane part;1.06783228080794e-16!GO:0019941;modification-dependent protein catabolic process;1.38591070386217e-16!GO:0043632;modification-dependent macromolecule catabolic process;1.38591070386217e-16!GO:0044257;cellular protein catabolic process;1.64899923135339e-16!GO:0015935;small ribosomal subunit;2.18226027935096e-16!GO:0048770;pigment granule;2.67579717979615e-16!GO:0042470;melanosome;2.67579717979615e-16!GO:0006511;ubiquitin-dependent protein catabolic process;3.05724212963414e-16!GO:0006464;protein modification process;9.23676816137025e-16!GO:0016874;ligase activity;1.21482196562921e-15!GO:0044265;cellular macromolecule catabolic process;1.35943054868198e-15!GO:0043285;biopolymer catabolic process;1.61577510040541e-15!GO:0016070;RNA metabolic process;4.8873749032637e-15!GO:0015934;large ribosomal subunit;5.56893342205865e-15!GO:0016192;vesicle-mediated transport;1.16429946077916e-14!GO:0016462;pyrophosphatase activity;1.16865294201352e-14!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;1.21105814854371e-14!GO:0030163;protein catabolic process;1.32880320558662e-14!GO:0044432;endoplasmic reticulum part;1.36752083947295e-14!GO:0016817;hydrolase activity, acting on acid anhydrides;1.6057641569149e-14!GO:0043687;post-translational protein modification;3.48131488836535e-14!GO:0017111;nucleoside-triphosphatase activity;6.18919530837115e-14!GO:0008135;translation factor activity, nucleic acid binding;1.17480232194762e-13!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);1.29322596192871e-13!GO:0009057;macromolecule catabolic process;1.48243899796483e-13!GO:0000166;nucleotide binding;3.95535420161125e-13!GO:0005746;mitochondrial respiratory chain;4.37448985744411e-13!GO:0005730;nucleolus;9.84372726564503e-13!GO:0000502;proteasome complex (sensu Eukaryota);1.61224617247334e-12!GO:0006259;DNA metabolic process;1.84065536422424e-12!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;2.73381342098973e-12!GO:0006605;protein targeting;2.8135215791549e-12!GO:0051082;unfolded protein binding;2.8135215791549e-12!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);3.40075882599731e-12!GO:0048193;Golgi vesicle transport;3.49124140577652e-12!GO:0050136;NADH dehydrogenase (quinone) activity;5.16551297787089e-12!GO:0003954;NADH dehydrogenase activity;5.16551297787089e-12!GO:0008137;NADH dehydrogenase (ubiquinone) activity;5.16551297787089e-12!GO:0006413;translational initiation;6.27053061992813e-12!GO:0006915;apoptosis;1.1167413433541e-11!GO:0012501;programmed cell death;1.17910658721757e-11!GO:0005768;endosome;1.5095385448084e-11!GO:0048523;negative regulation of cellular process;1.5095385448084e-11!GO:0008639;small protein conjugating enzyme activity;1.81377497778445e-11!GO:0044248;cellular catabolic process;2.45049234135522e-11!GO:0031980;mitochondrial lumen;3.10923167389979e-11!GO:0005759;mitochondrial matrix;3.10923167389979e-11!GO:0003743;translation initiation factor activity;3.33160609719377e-11!GO:0050794;regulation of cellular process;3.39728512538327e-11!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;3.54138729833073e-11!GO:0004842;ubiquitin-protein ligase activity;3.6064197844321e-11!GO:0008219;cell death;3.90393477787494e-11!GO:0016265;death;3.90393477787494e-11!GO:0019787;small conjugating protein ligase activity;5.79632244419025e-11!GO:0006446;regulation of translational initiation;1.27829121990405e-10!GO:0016604;nuclear body;1.32018036219315e-10!GO:0006461;protein complex assembly;1.44904771089741e-10!GO:0042175;nuclear envelope-endoplasmic reticulum network;1.4523454144705e-10!GO:0000398;nuclear mRNA splicing, via spliceosome;2.00820227940093e-10!GO:0000375;RNA splicing, via transesterification reactions;2.00820227940093e-10!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;2.00820227940093e-10!GO:0005789;endoplasmic reticulum membrane;2.20813648290507e-10!GO:0030964;NADH dehydrogenase complex (quinone);2.89825274565791e-10!GO:0045271;respiratory chain complex I;2.89825274565791e-10!GO:0005747;mitochondrial respiratory chain complex I;2.89825274565791e-10!GO:0042775;organelle ATP synthesis coupled electron transport;3.00692466825319e-10!GO:0042773;ATP synthesis coupled electron transport;3.00692466825319e-10!GO:0005635;nuclear envelope;5.03463129585848e-10!GO:0048519;negative regulation of biological process;5.66546963173188e-10!GO:0032553;ribonucleotide binding;6.39997183391948e-10!GO:0032555;purine ribonucleotide binding;6.39997183391948e-10!GO:0003712;transcription cofactor activity;7.52392253844809e-10!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;7.79213070492e-10!GO:0016607;nuclear speck;8.90788257762287e-10!GO:0006366;transcription from RNA polymerase II promoter;1.93349811997069e-09!GO:0005793;ER-Golgi intermediate compartment;2.03170551952783e-09!GO:0007049;cell cycle;2.17817331833885e-09!GO:0031965;nuclear membrane;2.85540164095307e-09!GO:0051246;regulation of protein metabolic process;3.21397555033135e-09!GO:0008565;protein transporter activity;3.74173814339687e-09!GO:0016879;ligase activity, forming carbon-nitrogen bonds;6.26860891401144e-09!GO:0016881;acid-amino acid ligase activity;6.36145187695896e-09!GO:0005761;mitochondrial ribosome;8.94965602334945e-09!GO:0000313;organellar ribosome;8.94965602334945e-09!GO:0017076;purine nucleotide binding;1.02904410423942e-08!GO:0044431;Golgi apparatus part;1.11274320469878e-08!GO:0050789;regulation of biological process;1.86809614080459e-08!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;2.37252249371796e-08!GO:0006913;nucleocytoplasmic transport;2.67115581794239e-08!GO:0030120;vesicle coat;2.69901299833232e-08!GO:0030662;coated vesicle membrane;2.69901299833232e-08!GO:0051186;cofactor metabolic process;4.08437339060687e-08!GO:0051169;nuclear transport;4.70204314097155e-08!GO:0006916;anti-apoptosis;4.98155094300931e-08!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;5.54782474309574e-08!GO:0031324;negative regulation of cellular metabolic process;6.66990445948824e-08!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;6.94115193729809e-08!GO:0006793;phosphorus metabolic process;8.63704962470002e-08!GO:0006796;phosphate metabolic process;8.63704962470002e-08!GO:0043069;negative regulation of programmed cell death;9.20983585141212e-08!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;9.23085455568993e-08!GO:0043066;negative regulation of apoptosis;1.09156163503604e-07!GO:0006325;establishment and/or maintenance of chromatin architecture;1.16967366468727e-07!GO:0048475;coated membrane;1.31419234569061e-07!GO:0030117;membrane coat;1.31419234569061e-07!GO:0005524;ATP binding;1.78029234873743e-07!GO:0009892;negative regulation of metabolic process;1.7970423922041e-07!GO:0003924;GTPase activity;2.0510117340297e-07!GO:0006888;ER to Golgi vesicle-mediated transport;2.65435740305985e-07!GO:0007264;small GTPase mediated signal transduction;2.67430531983921e-07!GO:0015986;ATP synthesis coupled proton transport;2.6974546899566e-07!GO:0015985;energy coupled proton transport, down electrochemical gradient;2.6974546899566e-07!GO:0044453;nuclear membrane part;2.88679340811337e-07!GO:0042254;ribosome biogenesis and assembly;3.04857722573204e-07!GO:0006323;DNA packaging;3.56219292186682e-07!GO:0004386;helicase activity;3.58186644519077e-07!GO:0032446;protein modification by small protein conjugation;3.58186644519077e-07!GO:0016469;proton-transporting two-sector ATPase complex;3.83121154269193e-07!GO:0042981;regulation of apoptosis;3.95559712823318e-07!GO:0009056;catabolic process;4.85100921528119e-07!GO:0017038;protein import;5.34680664102012e-07!GO:0016567;protein ubiquitination;5.54901139060606e-07!GO:0009259;ribonucleotide metabolic process;5.56602214650766e-07!GO:0032559;adenyl ribonucleotide binding;5.63551709880438e-07!GO:0009260;ribonucleotide biosynthetic process;6.4006756751688e-07!GO:0043067;regulation of programmed cell death;6.80396794938981e-07!GO:0016564;transcription repressor activity;7.01835504229141e-07!GO:0007249;I-kappaB kinase/NF-kappaB cascade;7.28650688902306e-07!GO:0015078;hydrogen ion transmembrane transporter activity;7.80761567204167e-07!GO:0009142;nucleoside triphosphate biosynthetic process;8.78162178840043e-07!GO:0009201;ribonucleoside triphosphate biosynthetic process;8.78162178840043e-07!GO:0009152;purine ribonucleotide biosynthetic process;1.05510743716018e-06!GO:0007243;protein kinase cascade;1.16001435343206e-06!GO:0006164;purine nucleotide biosynthetic process;1.21789543176722e-06!GO:0005773;vacuole;1.23332874345986e-06!GO:0006732;coenzyme metabolic process;1.26060369723021e-06!GO:0016310;phosphorylation;1.32551782179355e-06!GO:0019829;cation-transporting ATPase activity;1.33557954134323e-06!GO:0005643;nuclear pore;1.4888725088719e-06!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;1.6702492184517e-06!GO:0009145;purine nucleoside triphosphate biosynthetic process;1.6702492184517e-06!GO:0009150;purine ribonucleotide metabolic process;1.78510020928317e-06!GO:0031988;membrane-bound vesicle;1.78510020928317e-06!GO:0006163;purine nucleotide metabolic process;1.84609756994535e-06!GO:0016023;cytoplasmic membrane-bound vesicle;2.10336451056422e-06!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;2.10336451056422e-06!GO:0016887;ATPase activity;2.4385962256892e-06!GO:0016481;negative regulation of transcription;2.50722062239391e-06!GO:0000139;Golgi membrane;2.50722062239391e-06!GO:0009060;aerobic respiration;3.18974657257002e-06!GO:0031982;vesicle;3.54539663963078e-06!GO:0006754;ATP biosynthetic process;4.0026810574165e-06!GO:0006753;nucleoside phosphate metabolic process;4.0026810574165e-06!GO:0000151;ubiquitin ligase complex;4.26251033285879e-06!GO:0003714;transcription corepressor activity;4.43478307863159e-06!GO:0006974;response to DNA damage stimulus;4.74167345272064e-06!GO:0044440;endosomal part;4.97470351300477e-06!GO:0010008;endosome membrane;4.97470351300477e-06!GO:0009199;ribonucleoside triphosphate metabolic process;5.0063797249796e-06!GO:0006399;tRNA metabolic process;5.17691479348401e-06!GO:0042623;ATPase activity, coupled;5.28246590555313e-06!GO:0009141;nucleoside triphosphate metabolic process;5.49054084092918e-06!GO:0051276;chromosome organization and biogenesis;5.50613265308561e-06!GO:0031410;cytoplasmic vesicle;6.13084355243457e-06!GO:0030532;small nuclear ribonucleoprotein complex;7.11990280373614e-06!GO:0005788;endoplasmic reticulum lumen;7.16969660499091e-06!GO:0065002;intracellular protein transport across a membrane;7.55179538375664e-06!GO:0030554;adenyl nucleotide binding;7.58359671796407e-06!GO:0008026;ATP-dependent helicase activity;8.15949164906972e-06!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;8.15949164906972e-06!GO:0004812;aminoacyl-tRNA ligase activity;8.15949164906972e-06!GO:0016875;ligase activity, forming carbon-oxygen bonds;8.15949164906972e-06!GO:0005798;Golgi-associated vesicle;8.73465698907544e-06!GO:0050657;nucleic acid transport;8.73465698907544e-06!GO:0051236;establishment of RNA localization;8.73465698907544e-06!GO:0050658;RNA transport;8.73465698907544e-06!GO:0009205;purine ribonucleoside triphosphate metabolic process;8.73734393422041e-06!GO:0009144;purine nucleoside triphosphate metabolic process;8.73734393422041e-06!GO:0000074;regulation of progression through cell cycle;9.91676046243219e-06!GO:0006403;RNA localization;1.00095237835759e-05!GO:0045333;cellular respiration;1.00537985684165e-05!GO:0051726;regulation of cell cycle;1.02570126030158e-05!GO:0009055;electron carrier activity;1.04817986436513e-05!GO:0005770;late endosome;1.063278679405e-05!GO:0000323;lytic vacuole;1.09955031439439e-05!GO:0005764;lysosome;1.09955031439439e-05!GO:0016568;chromatin modification;1.1034741704915e-05!GO:0043038;amino acid activation;1.21948935675425e-05!GO:0006418;tRNA aminoacylation for protein translation;1.21948935675425e-05!GO:0043039;tRNA aminoacylation;1.21948935675425e-05!GO:0051789;response to protein stimulus;1.29789570741296e-05!GO:0006986;response to unfolded protein;1.29789570741296e-05!GO:0022402;cell cycle process;1.3247082559934e-05!GO:0031252;leading edge;1.45136446466643e-05!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;1.49598431630551e-05!GO:0000245;spliceosome assembly;1.59613091359871e-05!GO:0019222;regulation of metabolic process;1.70511608598113e-05!GO:0005525;GTP binding;1.71105541036706e-05!GO:0043623;cellular protein complex assembly;1.80242556695925e-05!GO:0006357;regulation of transcription from RNA polymerase II promoter;1.9637119854618e-05!GO:0019899;enzyme binding;2.23360693462755e-05!GO:0006613;cotranslational protein targeting to membrane;2.25559416859266e-05!GO:0045259;proton-transporting ATP synthase complex;2.4867554225411e-05!GO:0007005;mitochondrion organization and biogenesis;2.66922765823705e-05!GO:0003713;transcription coactivator activity;2.78961190856886e-05!GO:0046034;ATP metabolic process;2.96415499739622e-05!GO:0030036;actin cytoskeleton organization and biogenesis;4.58257420139134e-05!GO:0016563;transcription activator activity;4.64495133837652e-05!GO:0006333;chromatin assembly or disassembly;4.76412786615057e-05!GO:0008092;cytoskeletal protein binding;4.76412786615057e-05!GO:0051170;nuclear import;4.94546389946555e-05!GO:0031202;RNA splicing factor activity, transesterification mechanism;5.01445930961853e-05!GO:0065007;biological regulation;5.30306592867203e-05!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;5.41896905188991e-05!GO:0016772;transferase activity, transferring phosphorus-containing groups;5.74699482538384e-05!GO:0006281;DNA repair;6.19551772743704e-05!GO:0046930;pore complex;6.32144599104298e-05!GO:0015077;monovalent inorganic cation transmembrane transporter activity;6.36187490701897e-05!GO:0006099;tricarboxylic acid cycle;6.36187490701897e-05!GO:0046356;acetyl-CoA catabolic process;6.36187490701897e-05!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;6.93037276531548e-05!GO:0005839;proteasome core complex (sensu Eukaryota);6.96585647458786e-05!GO:0043566;structure-specific DNA binding;7.14721537932317e-05!GO:0030057;desmosome;7.14721537932317e-05!GO:0006606;protein import into nucleus;7.68045372771463e-05!GO:0003724;RNA helicase activity;8.99947996763245e-05!GO:0005769;early endosome;9.01076182712169e-05!GO:0016740;transferase activity;9.29773395366835e-05!GO:0008654;phospholipid biosynthetic process;9.92753421954223e-05!GO:0009967;positive regulation of signal transduction;9.94290112677971e-05!GO:0016859;cis-trans isomerase activity;0.000108313104700811!GO:0048471;perinuclear region of cytoplasm;0.000115043021451278!GO:0032561;guanyl ribonucleotide binding;0.000118296887906574!GO:0019001;guanyl nucleotide binding;0.000118296887906574!GO:0007265;Ras protein signal transduction;0.000121985249429132!GO:0065004;protein-DNA complex assembly;0.000124544058255806!GO:0051188;cofactor biosynthetic process;0.000128512770320253!GO:0030133;transport vesicle;0.000134558190456653!GO:0045892;negative regulation of transcription, DNA-dependent;0.000138928261575579!GO:0042802;identical protein binding;0.000144334000721782!GO:0030867;rough endoplasmic reticulum membrane;0.000147915226284642!GO:0006752;group transfer coenzyme metabolic process;0.000149760636047282!GO:0006364;rRNA processing;0.000171544122117645!GO:0045786;negative regulation of progression through cell cycle;0.00017172413892007!GO:0006084;acetyl-CoA metabolic process;0.000172467234502599!GO:0016072;rRNA metabolic process;0.000172945738162057!GO:0000785;chromatin;0.000173184500806518!GO:0009719;response to endogenous stimulus;0.000184166492009758!GO:0051028;mRNA transport;0.000185699894817451!GO:0033116;ER-Golgi intermediate compartment membrane;0.000191500174029672!GO:0016787;hydrolase activity;0.000207369694811634!GO:0004298;threonine endopeptidase activity;0.000213937981897187!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;0.000214666076299419!GO:0003697;single-stranded DNA binding;0.000214666076299419!GO:0048522;positive regulation of cellular process;0.000223665977795673!GO:0051427;hormone receptor binding;0.000227717378304321!GO:0008361;regulation of cell size;0.000229803892868657!GO:0016853;isomerase activity;0.000252557557955523!GO:0065009;regulation of a molecular function;0.000285155731903418!GO:0019843;rRNA binding;0.000289315024035667!GO:0005667;transcription factor complex;0.0002917198524828!GO:0030029;actin filament-based process;0.000302932932018785!GO:0009966;regulation of signal transduction;0.000427320014089254!GO:0035257;nuclear hormone receptor binding;0.000441117545189707!GO:0009109;coenzyme catabolic process;0.000442257058426328!GO:0016049;cell growth;0.000444973725186984!GO:0001558;regulation of cell growth;0.000469751031708551!GO:0007242;intracellular signaling cascade;0.000470047439646867!GO:0051187;cofactor catabolic process;0.000516796832877612!GO:0043021;ribonucleoprotein binding;0.000593886091263161!GO:0016044;membrane organization and biogenesis;0.000623563133423162!GO:0006612;protein targeting to membrane;0.000632098447971317!GO:0008250;oligosaccharyl transferase complex;0.000636073009142733!GO:0005791;rough endoplasmic reticulum;0.000679280829178058!GO:0003729;mRNA binding;0.000685814611692485!GO:0051252;regulation of RNA metabolic process;0.000866474532477402!GO:0030658;transport vesicle membrane;0.000873826198630315!GO:0005852;eukaryotic translation initiation factor 3 complex;0.000926384037206684!GO:0016197;endosome transport;0.00100871655192083!GO:0004576;oligosaccharyl transferase activity;0.00101453459326681!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.00102691162363268!GO:0005048;signal sequence binding;0.00108600286771157!GO:0009117;nucleotide metabolic process;0.00109338061866719!GO:0005885;Arp2/3 protein complex;0.00118578124596921!GO:0000307;cyclin-dependent protein kinase holoenzyme complex;0.00118834724252425!GO:0008186;RNA-dependent ATPase activity;0.00119254568218356!GO:0030118;clathrin coat;0.0012247573173631!GO:0005741;mitochondrial outer membrane;0.00123050218596649!GO:0016779;nucleotidyltransferase activity;0.00129594349186569!GO:0001726;ruffle;0.00136814608404157!GO:0051920;peroxiredoxin activity;0.00150760456160276!GO:0031968;organelle outer membrane;0.00157662595426215!GO:0046983;protein dimerization activity;0.00165881236863727!GO:0005905;coated pit;0.00166974361230955!GO:0031323;regulation of cellular metabolic process;0.00172424789989185!GO:0005694;chromosome;0.00173785251176513!GO:0006417;regulation of translation;0.00177550192371799!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.00191416165803009!GO:0009108;coenzyme biosynthetic process;0.00192563328786411!GO:0030663;COPI coated vesicle membrane;0.00192641194522671!GO:0030126;COPI vesicle coat;0.00192641194522671!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.00195044408858663!GO:0019867;outer membrane;0.00199455136841275!GO:0006650;glycerophospholipid metabolic process;0.00201090006224329!GO:0030660;Golgi-associated vesicle membrane;0.00203688103197702!GO:0044427;chromosomal part;0.00208349891336849!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.00209622318055029!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;0.00212010408984279!GO:0048518;positive regulation of biological process;0.0021865380638613!GO:0045454;cell redox homeostasis;0.00220405562339792!GO:0000122;negative regulation of transcription from RNA polymerase II promoter;0.00222428359300659!GO:0051168;nuclear export;0.00230124505186558!GO:0031072;heat shock protein binding;0.00245809761509206!GO:0016281;eukaryotic translation initiation factor 4F complex;0.00246117525873457!GO:0030659;cytoplasmic vesicle membrane;0.00246117525873457!GO:0005762;mitochondrial large ribosomal subunit;0.00254668508265344!GO:0000315;organellar large ribosomal subunit;0.00254668508265344!GO:0048468;cell development;0.0027345892426057!GO:0015630;microtubule cytoskeleton;0.00274040901603548!GO:0005083;small GTPase regulator activity;0.00281072432152289!GO:0048500;signal recognition particle;0.00294319729803831!GO:0030132;clathrin coat of coated pit;0.00295701767511528!GO:0001666;response to hypoxia;0.00300261617427935!GO:0030384;phosphoinositide metabolic process;0.00308151963173448!GO:0004004;ATP-dependent RNA helicase activity;0.00315942265595207!GO:0016780;phosphotransferase activity, for other substituted phosphate groups;0.00319547064761719!GO:0004674;protein serine/threonine kinase activity;0.00321499095548105!GO:0006414;translational elongation;0.00325172001616313!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.00326080060994032!GO:0005813;centrosome;0.00326080060994032!GO:0030119;AP-type membrane coat adaptor complex;0.00326080060994032!GO:0006891;intra-Golgi vesicle-mediated transport;0.00349461203024014!GO:0003711;transcription elongation regulator activity;0.00349461203024014!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.00371271289130297!GO:0051128;regulation of cellular component organization and biogenesis;0.00389514908393414!GO:0018196;peptidyl-asparagine modification;0.00389514908393414!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.00389514908393414!GO:0008286;insulin receptor signaling pathway;0.0039115803043637!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00399978549439062!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00399978549439062!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00399978549439062!GO:0006334;nucleosome assembly;0.00406828346374063!GO:0031497;chromatin assembly;0.00410710708177364!GO:0040008;regulation of growth;0.00411869388952905!GO:0006402;mRNA catabolic process;0.00412805980886815!GO:0043681;protein import into mitochondrion;0.00483476144360251!GO:0000314;organellar small ribosomal subunit;0.00492426980267537!GO:0005763;mitochondrial small ribosomal subunit;0.00492426980267537!GO:0007010;cytoskeleton organization and biogenesis;0.00501989313487134!GO:0043488;regulation of mRNA stability;0.00503230052500703!GO:0043487;regulation of RNA stability;0.00503230052500703!GO:0046474;glycerophospholipid biosynthetic process;0.00513156848060118!GO:0051087;chaperone binding;0.00515957282323661!GO:0048487;beta-tubulin binding;0.0051951721000039!GO:0030127;COPII vesicle coat;0.00532306865614281!GO:0012507;ER to Golgi transport vesicle membrane;0.00532306865614281!GO:0007266;Rho protein signal transduction;0.00541571403304341!GO:0030131;clathrin adaptor complex;0.00561316988186868!GO:0046489;phosphoinositide biosynthetic process;0.00564925261158927!GO:0003899;DNA-directed RNA polymerase activity;0.00578125081348!GO:0006354;RNA elongation;0.00580822375262971!GO:0030137;COPI-coated vesicle;0.00593600665943118!GO:0050790;regulation of catalytic activity;0.00607729058005088!GO:0030134;ER to Golgi transport vesicle;0.00610333744771569!GO:0030125;clathrin vesicle coat;0.00613249579462513!GO:0030665;clathrin coated vesicle membrane;0.00613249579462513!GO:0000079;regulation of cyclin-dependent protein kinase activity;0.00613249579462513!GO:0015980;energy derivation by oxidation of organic compounds;0.0062839412290118!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.00656365686187349!GO:0045047;protein targeting to ER;0.00656365686187349!GO:0016363;nuclear matrix;0.00659276849806072!GO:0008234;cysteine-type peptidase activity;0.00677461554161733!GO:0044433;cytoplasmic vesicle part;0.00693854530009888!GO:0003690;double-stranded DNA binding;0.00786475945753251!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.00788583452097308!GO:0012506;vesicle membrane;0.00863093297832152!GO:0000059;protein import into nucleus, docking;0.00870168178793119!GO:0008312;7S RNA binding;0.00901075610995648!GO:0006401;RNA catabolic process;0.00934242699744145!GO:0046467;membrane lipid biosynthetic process;0.00943213447101529!GO:0050811;GABA receptor binding;0.00959486167172531!GO:0000278;mitotic cell cycle;0.00980544215894528!GO:0045893;positive regulation of transcription, DNA-dependent;0.00988502928893776!GO:0007030;Golgi organization and biogenesis;0.0100239040130023!GO:0010468;regulation of gene expression;0.0102130701924863!GO:0031625;ubiquitin protein ligase binding;0.0102130701924863!GO:0005815;microtubule organizing center;0.0103289654273719!GO:0045045;secretory pathway;0.0103544702085989!GO:0008610;lipid biosynthetic process;0.0103833802381889!GO:0030521;androgen receptor signaling pathway;0.0106245399724895!GO:0031326;regulation of cellular biosynthetic process;0.0107772763549837!GO:0006260;DNA replication;0.0112183390670498!GO:0022890;inorganic cation transmembrane transporter activity;0.0112183390670498!GO:0051101;regulation of DNA binding;0.0114254557890822!GO:0031901;early endosome membrane;0.0114615103940613!GO:0045935;positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.0115025372090349!GO:0008139;nuclear localization sequence binding;0.0116794587749797!GO:0015631;tubulin binding;0.0118436004312166!GO:0030027;lamellipodium;0.0118665321709822!GO:0030041;actin filament polymerization;0.0120100941567789!GO:0051098;regulation of binding;0.0127152589901346!GO:0006350;transcription;0.0130318806374146!GO:0005938;cell cortex;0.0130752282956463!GO:0008270;zinc ion binding;0.0130852018934892!GO:0031529;ruffle organization and biogenesis;0.0133782775350659!GO:0007034;vacuolar transport;0.0133933465906807!GO:0048146;positive regulation of fibroblast proliferation;0.0135843572686899!GO:0035258;steroid hormone receptor binding;0.0136708155147524!GO:0006626;protein targeting to mitochondrion;0.0140410522405104!GO:0030833;regulation of actin filament polymerization;0.0145612241163563!GO:0048144;fibroblast proliferation;0.0147821658455446!GO:0048145;regulation of fibroblast proliferation;0.0147821658455446!GO:0006839;mitochondrial transport;0.0147821658455446!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.0147821658455446!GO:0015399;primary active transmembrane transporter activity;0.0147821658455446!GO:0006818;hydrogen transport;0.0148371446485318!GO:0003746;translation elongation factor activity;0.0150476923080897!GO:0030176;integral to endoplasmic reticulum membrane;0.0155131180499891!GO:0051338;regulation of transferase activity;0.0161785935142023!GO:0043022;ribosome binding;0.0163144888016335!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.0163684018123218!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.0163684018123218!GO:0009889;regulation of biosynthetic process;0.0166529984540238!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.0166529984540238!GO:0015002;heme-copper terminal oxidase activity;0.0166529984540238!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.0166529984540238!GO:0004129;cytochrome-c oxidase activity;0.0166529984540238!GO:0015992;proton transport;0.0166752931896534!GO:0045941;positive regulation of transcription;0.0172966547749119!GO:0031418;L-ascorbic acid binding;0.0174612953092811!GO:0006611;protein export from nucleus;0.0182857992148753!GO:0007006;mitochondrial membrane organization and biogenesis;0.0185370714168609!GO:0008064;regulation of actin polymerization and/or depolymerization;0.0186882274142236!GO:0007050;cell cycle arrest;0.0186882274142236!GO:0005912;adherens junction;0.0188088146279233!GO:0035035;histone acetyltransferase binding;0.018908397133637!GO:0017166;vinculin binding;0.0189455619343067!GO:0008180;signalosome;0.0193414984754391!GO:0006509;membrane protein ectodomain proteolysis;0.0194505259417217!GO:0033619;membrane protein proteolysis;0.0194505259417217!GO:0005684;U2-dependent spliceosome;0.0196354210017937!GO:0016301;kinase activity;0.0198028371902629!GO:0006518;peptide metabolic process;0.0198822971763049!GO:0006383;transcription from RNA polymerase III promoter;0.020339428264831!GO:0046578;regulation of Ras protein signal transduction;0.0203738951333189!GO:0031543;peptidyl-proline dioxygenase activity;0.0204728134476881!GO:0045334;clathrin-coated endocytic vesicle;0.0208205731806694!GO:0050681;androgen receptor binding;0.021092292151837!GO:0008287;protein serine/threonine phosphatase complex;0.0211360267064241!GO:0016706;oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors;0.0216737787204967!GO:0031902;late endosome membrane;0.0220786196258593!GO:0008154;actin polymerization and/or depolymerization;0.0229020646408901!GO:0051301;cell division;0.023110125299404!GO:0005774;vacuolar membrane;0.0235020476746725!GO:0006643;membrane lipid metabolic process;0.0238340034261053!GO:0005869;dynactin complex;0.0243071359659609!GO:0030832;regulation of actin filament length;0.0251669431562394!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.0267088091877462!GO:0032535;regulation of cellular component size;0.0268285057363621!GO:0008601;protein phosphatase type 2A regulator activity;0.0272877465935068!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.0276347888283168!GO:0043549;regulation of kinase activity;0.0276821525125983!GO:0022406;membrane docking;0.0286591731236084!GO:0048278;vesicle docking;0.0286591731236084!GO:0006376;mRNA splice site selection;0.0299148992695142!GO:0000389;nuclear mRNA 3'-splice site recognition;0.0299148992695142!GO:0051287;NAD binding;0.0301926463445615!GO:0000209;protein polyubiquitination;0.030300473184417!GO:0032507;maintenance of cellular protein localization;0.0304796655861718!GO:0003779;actin binding;0.0306374802145762!GO:0007041;lysosomal transport;0.0306374802145762!GO:0051493;regulation of cytoskeleton organization and biogenesis;0.0308418551711222!GO:0033043;regulation of organelle organization and biogenesis;0.0308418551711222!GO:0032940;secretion by cell;0.0310348410639976!GO:0005856;cytoskeleton;0.0311044382791713!GO:0030865;cortical cytoskeleton organization and biogenesis;0.0314453369576572!GO:0016860;intramolecular oxidoreductase activity;0.0315368988797674!GO:0030880;RNA polymerase complex;0.0317218712631136!GO:0044452;nucleolar part;0.032530496911465!GO:0043087;regulation of GTPase activity;0.0335332369700293!GO:0016272;prefoldin complex;0.0342152902274019!GO:0008144;drug binding;0.034587751251315!GO:0005832;chaperonin-containing T-complex;0.0347040429440982!GO:0007028;cytoplasm organization and biogenesis;0.0347418222973356!GO:0016251;general RNA polymerase II transcription factor activity;0.0354364251507603!GO:0006904;vesicle docking during exocytosis;0.0355558606706694!GO:0000049;tRNA binding;0.0359167461749989!GO:0032956;regulation of actin cytoskeleton organization and biogenesis;0.0378733313312174!GO:0042787;protein ubiquitination during ubiquitin-dependent protein catabolic process;0.038448566071113!GO:0030695;GTPase regulator activity;0.0390026921926871!GO:0006368;RNA elongation from RNA polymerase II promoter;0.0394054596298093!GO:0000159;protein phosphatase type 2A complex;0.0399335483986889!GO:0008047;enzyme activator activity;0.0401116365846275!GO:0004860;protein kinase inhibitor activity;0.0403498743937494!GO:0006892;post-Golgi vesicle-mediated transport;0.0407133403866841!GO:0006595;polyamine metabolic process;0.0412133422869887!GO:0030518;steroid hormone receptor signaling pathway;0.0415163687472234!GO:0006979;response to oxidative stress;0.0415848869764747!GO:0008426;protein kinase C inhibitor activity;0.0419929754749846!GO:0046966;thyroid hormone receptor binding;0.0419929754749846!GO:0046914;transition metal ion binding;0.0420081356501677!GO:0006644;phospholipid metabolic process;0.0431046906139897!GO:0016773;phosphotransferase activity, alcohol group as acceptor;0.0431229319554868!GO:0016491;oxidoreductase activity;0.0431904357659792!GO:0005665;DNA-directed RNA polymerase II, core complex;0.0435641440375513!GO:0002474;antigen processing and presentation of peptide antigen via MHC class I;0.0442050463831403!GO:0019219;regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.0442050463831403!GO:0006897;endocytosis;0.0443162120683048!GO:0010324;membrane invagination;0.0443162120683048!GO:0016311;dephosphorylation;0.0444231838811766!GO:0045859;regulation of protein kinase activity;0.0444820685520377!GO:0033673;negative regulation of kinase activity;0.0445704812578995!GO:0006469;negative regulation of protein kinase activity;0.0445704812578995!GO:0005099;Ras GTPase activator activity;0.0454435777180282!GO:0009165;nucleotide biosynthetic process;0.0455795114881968!GO:0031371;ubiquitin conjugating enzyme complex;0.0472667622726193!GO:0006506;GPI anchor biosynthetic process;0.0473044133314858!GO:0030911;TPR domain binding;0.0478912900496904!GO:0019798;procollagen-proline dioxygenase activity;0.0497817106883261!GO:0043034;costamere;0.0498080237790876!GO:0019783;small conjugating protein-specific protease activity;0.0498080237790876 | |||
|sample_id=12235 | |sample_id=12235 | ||
|sample_note=Jan 20 librarian | |sample_note=Jan 20 librarian | ||
| Line 76: | Line 100: | ||
|sample_tissue=amnion | |sample_tissue=amnion | ||
|top_motifs=SNAI1..3:2.16190909817;XCPE1{core}:2.14227615437;NKX2-1,4:2.11607306753;FOXL1:2.10151695162;ZNF148:1.77095296295;GLI1..3:1.76314649366;SP1:1.7460838489;PPARG:1.70816055673;EP300:1.64424600171;TBP:1.6341154056;HIF1A:1.56468733626;PAX4:1.5302100866;FOXN1:1.46529568693;ZEB1:1.45803942097;FOXM1:1.36057699089;TEAD1:1.34043189527;HOX{A6,A7,B6,B7}:1.20242386226;TFAP2{A,C}:1.18667200167;MAZ:1.1781437344;POU1F1:1.11736419438;RORA:1.1072086865;FOXO1,3,4:1.09921797978;TP53:1.01492126963;NKX2-2,8:1.01446643488;CDC5L:1.0061692932;TBX4,5:0.962142549463;HAND1,2:0.923677014077;FOS_FOS{B,L1}_JUN{B,D}:0.890858630013;AIRE:0.865748512941;PAX8:0.805135145389;POU6F1:0.782589791336;NKX2-3_NKX2-5:0.762432062054;HBP1_HMGB_SSRP1_UBTF:0.740320312694;TLX2:0.723738775285;MYOD1:0.700179661452;BACH2:0.673277450901;RXRA_VDR{dimer}:0.613803882208;VSX1,2:0.592643134202;HMX1:0.548082083179;GCM1,2:0.534683993948;ONECUT1,2:0.519666959872;FOX{I1,J2}:0.511040434486;UFEwm:0.507979120634;TEF:0.488176825568;JUN:0.473925110087;FOX{D1,D2}:0.472515614925;HMGA1,2:0.448681392852;POU3F1..4:0.44506211634;bHLH_family:0.404602664347;FOSL2:0.401188210043;MED-1{core}:0.357856692095;ARID5B:0.351764800103;NR1H4:0.346191930447;EVI1:0.344253331028;HOXA9_MEIS1:0.336337580389;BPTF:0.331542906005;HSF1,2:0.316492871011;HOX{A4,D4}:0.315909067646;TFCP2:0.289706501195;POU2F1..3:0.285223589399;IKZF1:0.283461579551;GZF1:0.278342735942;ZBTB6:0.26072189781;ESR1:0.253970867638;ZNF238:0.245888058397;EN1,2:0.237816444045;MTF1:0.180905729421;LEF1_TCF7_TCF7L1,2:0.150321224164;ADNP_IRX_SIX_ZHX:0.14295944024;EBF1:0.14195166314;HLF:0.139419496126;ATF4:0.139197038542;ZIC1..3:0.137235939445;PITX1..3:0.135415705623;HIC1:0.123991186232;ATF6:0.0883920246071;CREB1:0.0617826882515;PAX2:0.04903451049;IRF7:0.0420306713935;XBP1:0.0240982769359;EGR1..3:0.0224255501278;TFAP2B:0.00504136422549;GTF2I:-0.0136416904806;ALX1:-0.0340580693432;ATF5_CREB3:-0.0514686575481;ZNF143:-0.0592945806612;ESRRA:-0.0600692247571;NKX3-2:-0.0616172379074;HOX{A5,B5}:-0.0671885819373;RFX1:-0.0682687400475;HNF1A:-0.0806753133898;HES1:-0.0877325540036;GATA6:-0.0987316624668;ELK1,4_GABP{A,B1}:-0.107711943968;SOX5:-0.110179249621;NFE2:-0.110514936657;PAX5:-0.133377217519;TLX1..3_NFIC{dimer}:-0.136056746249;MYBL2:-0.155023855158;PAX1,9:-0.161081677803;FOXP3:-0.163695931792;SOX17:-0.169391711108;NFATC1..3:-0.187184367186;GTF2A1,2:-0.24437557745;ZNF384:-0.248177614956;ZNF423:-0.248463334704;STAT1,3:-0.251552950408;SMAD1..7,9:-0.252625791866;RFX2..5_RFXANK_RFXAP:-0.256226844567;MTE{core}:-0.259622810585;OCT4_SOX2{dimer}:-0.265731232838;MEF2{A,B,C,D}:-0.268060798248;FOXP1:-0.310729947617;PATZ1:-0.311961092153;ALX4:-0.312497646784;MYFfamily:-0.318679420942;ZFP161:-0.336606664745;NFKB1_REL_RELA:-0.346682996873;CRX:-0.35944976067;NRF1:-0.366402062346;SREBF1,2:-0.386757379279;NFIL3:-0.393040658929;NFY{A,B,C}:-0.396920894096;STAT2,4,6:-0.42128161243;REST:-0.430795583972;FOXQ1:-0.454642959236;KLF4:-0.45794835219;NHLH1,2:-0.460068761402;MYB:-0.461514541031;FOXA2:-0.466350470028;MAFB:-0.475479130508;SPI1:-0.521777526767;GFI1:-0.522177438155;NANOG{mouse}:-0.522983727255;SRF:-0.528557858783;CEBPA,B_DDIT3:-0.537485939781;IRF1,2:-0.538986899984;T:-0.54045263588;STAT5{A,B}:-0.55307098838;RUNX1..3:-0.564278265135;RREB1:-0.569703089529;LMO2:-0.576932090786;HNF4A_NR2F1,2:-0.579483619281;ATF2:-0.599296006023;TFDP1:-0.611045239614;TFAP4:-0.614300829147;DBP:-0.62398189567;ZBTB16:-0.631580639954;MZF1:-0.648118964011;SOX{8,9,10}:-0.669538414994;AR:-0.694911199116;RBPJ:-0.704201358299;SPZ1:-0.708507984019;TGIF1:-0.742926847783;ETS1,2:-0.744199524343;NR6A1:-0.755814673849;AHR_ARNT_ARNT2:-0.770706594842;NR3C1:-0.787987543522;PBX1:-0.788362764374;SPIB:-0.793366340092;NR5A1,2:-0.795814527636;RXR{A,B,G}:-0.805193596818;NKX3-1:-0.832385953914;CUX2:-0.84273382091;YY1:-0.852061931212;BREu{core}:-0.856186869928;PAX3,7:-0.858739901962;E2F1..5:-0.902326457519;SOX2:-0.916367358305;TAL1_TCF{3,4,12}:-0.919974428225;ELF1,2,4:-0.937791710707;NKX6-1,2:-1.00258447663;FOX{F1,F2,J1}:-1.00797462171;GFI1B:-1.00956320237;DMAP1_NCOR{1,2}_SMARC:-1.02301184149;TOPORS:-1.03539773229;RXR{A,B,G}_{NR1H2,PPAR}dimers:-1.05452033961;NFE2L2:-1.06395185577;LHX3,4:-1.10051212123;PDX1:-1.12748846049;PAX6:-1.12828461752;NFE2L1:-1.15376169108;PRDM1:-1.22544797915;FOXD3:-1.23688755464;PRRX1,2:-1.27261876604;IKZF2:-1.30634666627;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-1.34768576437;CDX1,2,4:-1.45782021382;GATA4:-1.49928936419;NANOG:-1.58836487634;NFIX:-1.94706176666;POU5F1:-2.09632609962 | |top_motifs=SNAI1..3:2.16190909817;XCPE1{core}:2.14227615437;NKX2-1,4:2.11607306753;FOXL1:2.10151695162;ZNF148:1.77095296295;GLI1..3:1.76314649366;SP1:1.7460838489;PPARG:1.70816055673;EP300:1.64424600171;TBP:1.6341154056;HIF1A:1.56468733626;PAX4:1.5302100866;FOXN1:1.46529568693;ZEB1:1.45803942097;FOXM1:1.36057699089;TEAD1:1.34043189527;HOX{A6,A7,B6,B7}:1.20242386226;TFAP2{A,C}:1.18667200167;MAZ:1.1781437344;POU1F1:1.11736419438;RORA:1.1072086865;FOXO1,3,4:1.09921797978;TP53:1.01492126963;NKX2-2,8:1.01446643488;CDC5L:1.0061692932;TBX4,5:0.962142549463;HAND1,2:0.923677014077;FOS_FOS{B,L1}_JUN{B,D}:0.890858630013;AIRE:0.865748512941;PAX8:0.805135145389;POU6F1:0.782589791336;NKX2-3_NKX2-5:0.762432062054;HBP1_HMGB_SSRP1_UBTF:0.740320312694;TLX2:0.723738775285;MYOD1:0.700179661452;BACH2:0.673277450901;RXRA_VDR{dimer}:0.613803882208;VSX1,2:0.592643134202;HMX1:0.548082083179;GCM1,2:0.534683993948;ONECUT1,2:0.519666959872;FOX{I1,J2}:0.511040434486;UFEwm:0.507979120634;TEF:0.488176825568;JUN:0.473925110087;FOX{D1,D2}:0.472515614925;HMGA1,2:0.448681392852;POU3F1..4:0.44506211634;bHLH_family:0.404602664347;FOSL2:0.401188210043;MED-1{core}:0.357856692095;ARID5B:0.351764800103;NR1H4:0.346191930447;EVI1:0.344253331028;HOXA9_MEIS1:0.336337580389;BPTF:0.331542906005;HSF1,2:0.316492871011;HOX{A4,D4}:0.315909067646;TFCP2:0.289706501195;POU2F1..3:0.285223589399;IKZF1:0.283461579551;GZF1:0.278342735942;ZBTB6:0.26072189781;ESR1:0.253970867638;ZNF238:0.245888058397;EN1,2:0.237816444045;MTF1:0.180905729421;LEF1_TCF7_TCF7L1,2:0.150321224164;ADNP_IRX_SIX_ZHX:0.14295944024;EBF1:0.14195166314;HLF:0.139419496126;ATF4:0.139197038542;ZIC1..3:0.137235939445;PITX1..3:0.135415705623;HIC1:0.123991186232;ATF6:0.0883920246071;CREB1:0.0617826882515;PAX2:0.04903451049;IRF7:0.0420306713935;XBP1:0.0240982769359;EGR1..3:0.0224255501278;TFAP2B:0.00504136422549;GTF2I:-0.0136416904806;ALX1:-0.0340580693432;ATF5_CREB3:-0.0514686575481;ZNF143:-0.0592945806612;ESRRA:-0.0600692247571;NKX3-2:-0.0616172379074;HOX{A5,B5}:-0.0671885819373;RFX1:-0.0682687400475;HNF1A:-0.0806753133898;HES1:-0.0877325540036;GATA6:-0.0987316624668;ELK1,4_GABP{A,B1}:-0.107711943968;SOX5:-0.110179249621;NFE2:-0.110514936657;PAX5:-0.133377217519;TLX1..3_NFIC{dimer}:-0.136056746249;MYBL2:-0.155023855158;PAX1,9:-0.161081677803;FOXP3:-0.163695931792;SOX17:-0.169391711108;NFATC1..3:-0.187184367186;GTF2A1,2:-0.24437557745;ZNF384:-0.248177614956;ZNF423:-0.248463334704;STAT1,3:-0.251552950408;SMAD1..7,9:-0.252625791866;RFX2..5_RFXANK_RFXAP:-0.256226844567;MTE{core}:-0.259622810585;OCT4_SOX2{dimer}:-0.265731232838;MEF2{A,B,C,D}:-0.268060798248;FOXP1:-0.310729947617;PATZ1:-0.311961092153;ALX4:-0.312497646784;MYFfamily:-0.318679420942;ZFP161:-0.336606664745;NFKB1_REL_RELA:-0.346682996873;CRX:-0.35944976067;NRF1:-0.366402062346;SREBF1,2:-0.386757379279;NFIL3:-0.393040658929;NFY{A,B,C}:-0.396920894096;STAT2,4,6:-0.42128161243;REST:-0.430795583972;FOXQ1:-0.454642959236;KLF4:-0.45794835219;NHLH1,2:-0.460068761402;MYB:-0.461514541031;FOXA2:-0.466350470028;MAFB:-0.475479130508;SPI1:-0.521777526767;GFI1:-0.522177438155;NANOG{mouse}:-0.522983727255;SRF:-0.528557858783;CEBPA,B_DDIT3:-0.537485939781;IRF1,2:-0.538986899984;T:-0.54045263588;STAT5{A,B}:-0.55307098838;RUNX1..3:-0.564278265135;RREB1:-0.569703089529;LMO2:-0.576932090786;HNF4A_NR2F1,2:-0.579483619281;ATF2:-0.599296006023;TFDP1:-0.611045239614;TFAP4:-0.614300829147;DBP:-0.62398189567;ZBTB16:-0.631580639954;MZF1:-0.648118964011;SOX{8,9,10}:-0.669538414994;AR:-0.694911199116;RBPJ:-0.704201358299;SPZ1:-0.708507984019;TGIF1:-0.742926847783;ETS1,2:-0.744199524343;NR6A1:-0.755814673849;AHR_ARNT_ARNT2:-0.770706594842;NR3C1:-0.787987543522;PBX1:-0.788362764374;SPIB:-0.793366340092;NR5A1,2:-0.795814527636;RXR{A,B,G}:-0.805193596818;NKX3-1:-0.832385953914;CUX2:-0.84273382091;YY1:-0.852061931212;BREu{core}:-0.856186869928;PAX3,7:-0.858739901962;E2F1..5:-0.902326457519;SOX2:-0.916367358305;TAL1_TCF{3,4,12}:-0.919974428225;ELF1,2,4:-0.937791710707;NKX6-1,2:-1.00258447663;FOX{F1,F2,J1}:-1.00797462171;GFI1B:-1.00956320237;DMAP1_NCOR{1,2}_SMARC:-1.02301184149;TOPORS:-1.03539773229;RXR{A,B,G}_{NR1H2,PPAR}dimers:-1.05452033961;NFE2L2:-1.06395185577;LHX3,4:-1.10051212123;PDX1:-1.12748846049;PAX6:-1.12828461752;NFE2L1:-1.15376169108;PRDM1:-1.22544797915;FOXD3:-1.23688755464;PRRX1,2:-1.27261876604;IKZF2:-1.30634666627;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-1.34768576437;CDX1,2,4:-1.45782021382;GATA4:-1.49928936419;NANOG:-1.58836487634;NFIX:-1.94706176666;POU5F1:-2.09632609962 | ||
|xref= | |||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:12235-129G3;search_select_hide=table117:FF:12235-129G3 | |||
}} | }} | ||
Latest revision as of 18:35, 4 June 2020
| Name: | amniotic membrane cells, donor1 |
|---|---|
| Species: | Human (Homo sapiens) |
| Library ID: | CNhs12502 |
| Sample type: | primary cells |
| Genomic View: | UCSC |
| RefEX: | Specific genes |
| FANTOM CAT: | 1, 2, 3, 4, 5 |
| CAGEd-oPOSSUM: | link |
| ZENBU report : | link |
| Additional information | ||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Sample information
RNA information
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| CAGE Accession numbers | ||||||||||||||||||||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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| Download raw sequence, BAM & CTSS | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs12502
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs12502
| Novel motif | Logo | P-value |
|---|---|---|
| 1 | 1 | 0.871 |
| 10 | 10 | 0.694 |
| 100 | 100 | 0.382 |
| 101 | 101 | 0.162 |
| 102 | 102 | 0.555 |
| 103 | 103 | 0.501 |
| 104 | 104 | 0.551 |
| 105 | 105 | 0.301 |
| 106 | 106 | 0.291 |
| 107 | 107 | 0.341 |
| 108 | 108 | 0.0772 |
| 109 | 109 | 0.0052 |
| 11 | 11 | 0.509 |
| 110 | 110 | 0.44 |
| 111 | 111 | 0.726 |
| 112 | 112 | 0.738 |
| 113 | 113 | 0.00165 |
| 114 | 114 | 0.784 |
| 115 | 115 | 0.624 |
| 116 | 116 | 0.274 |
| 117 | 117 | 0.29 |
| 118 | 118 | 0.00954 |
| 119 | 119 | 0.828 |
| 12 | 12 | 0.702 |
| 120 | 120 | 0.361 |
| 121 | 121 | 0.118 |
| 122 | 122 | 0.471 |
| 123 | 123 | 0.0287 |
| 124 | 124 | 0.0134 |
| 125 | 125 | 0.44 |
| 126 | 126 | 0.651 |
| 127 | 127 | 0.764 |
| 128 | 128 | 0.614 |
| 129 | 129 | 0.58 |
| 13 | 13 | 0.661 |
| 130 | 130 | 0.204 |
| 131 | 131 | 0.0337 |
| 132 | 132 | 0.227 |
| 133 | 133 | 0.0312 |
| 134 | 134 | 0.047 |
| 135 | 135 | 0.769 |
| 136 | 136 | 0.00163 |
| 137 | 137 | 0.0835 |
| 138 | 138 | 0.984 |
| 139 | 139 | 0.516 |
| 14 | 14 | 0.906 |
| 140 | 140 | 0.983 |
| 141 | 141 | 0.177 |
| 142 | 142 | 0.824 |
| 143 | 143 | 0.154 |
| 144 | 144 | 0.691 |
| 145 | 145 | 0.576 |
| 146 | 146 | 0.372 |
| 147 | 147 | 0.58 |
| 148 | 148 | 0.602 |
| 149 | 149 | 0.322 |
| 15 | 15 | 0.518 |
| 150 | 150 | 0.329 |
| 151 | 151 | 0.125 |
| 152 | 152 | 0.00658 |
| 153 | 153 | 0.889 |
| 154 | 154 | 0.643 |
| 155 | 155 | 0.0308 |
| 156 | 156 | 0.346 |
| 157 | 157 | 0.471 |
| 158 | 158 | 0.253 |
| 159 | 159 | 0.979 |
| 16 | 16 | 0.138 |
| 160 | 160 | 0.66 |
| 161 | 161 | 0.84 |
| 162 | 162 | 0.806 |
| 163 | 163 | 0.175 |
| 164 | 164 | 0.287 |
| 165 | 165 | 0.339 |
| 166 | 166 | 0.6 |
| 167 | 167 | 0.527 |
| 168 | 168 | 0.836 |
| 169 | 169 | 0.101 |
| 17 | 17 | 0.742 |
| 18 | 18 | 0.229 |
| 19 | 19 | 0.807 |
| 2 | 2 | 0.256 |
| 20 | 20 | 0.394 |
| 21 | 21 | 0.261 |
| 22 | 22 | 0.196 |
| 23 | 23 | 0.451 |
| 24 | 24 | 0.793 |
| 25 | 25 | 0.552 |
| 26 | 26 | 0.819 |
| 27 | 27 | 0.673 |
| 28 | 28 | 0.974 |
| 29 | 29 | 0.228 |
| 3 | 3 | 0.814 |
| 30 | 30 | 0.0693 |
| 31 | 31 | 0.842 |
| 32 | 32 | 0.573 |
| 33 | 33 | 0.869 |
| 34 | 34 | 0.17 |
| 35 | 35 | 0.00155 |
| 36 | 36 | 0.0744 |
| 37 | 37 | 0.527 |
| 38 | 38 | 0.732 |
| 39 | 39 | 0.368 |
| 4 | 4 | 0.61 |
| 40 | 40 | 0.558 |
| 41 | 41 | 0.457 |
| 42 | 42 | 0.752 |
| 43 | 43 | 0.688 |
| 44 | 44 | 0.811 |
| 45 | 45 | 0.0511 |
| 46 | 46 | 0.288 |
| 47 | 47 | 0.25 |
| 48 | 48 | 0.782 |
| 49 | 49 | 0.363 |
| 5 | 5 | 0.61 |
| 50 | 50 | 0.5 |
| 51 | 51 | 0.817 |
| 52 | 52 | 0.229 |
| 53 | 53 | 0.242 |
| 54 | 54 | 0.826 |
| 55 | 55 | 0.348 |
| 56 | 56 | 0.49 |
| 57 | 57 | 0.963 |
| 58 | 58 | 0.539 |
| 59 | 59 | 0.902 |
| 6 | 6 | 0.823 |
| 60 | 60 | 0.792 |
| 61 | 61 | 0.874 |
| 62 | 62 | 0.507 |
| 63 | 63 | 0.847 |
| 64 | 64 | 0.955 |
| 65 | 65 | 0.732 |
| 66 | 66 | 0.604 |
| 67 | 67 | 0.708 |
| 68 | 68 | 0.764 |
| 69 | 69 | 0.0426 |
| 7 | 7 | 0.581 |
| 70 | 70 | 0.404 |
| 71 | 71 | 0.156 |
| 72 | 72 | 0.338 |
| 73 | 73 | 0.0118 |
| 74 | 74 | 0.0297 |
| 75 | 75 | 0.309 |
| 76 | 76 | 0.694 |
| 77 | 77 | 0.51 |
| 78 | 78 | 0.409 |
| 79 | 79 | 0.589 |
| 8 | 8 | 0.419 |
| 80 | 80 | 0.25 |
| 81 | 81 | 0.423 |
| 82 | 82 | 0.633 |
| 83 | 83 | 0.539 |
| 84 | 84 | 0.314 |
| 85 | 85 | 0.133 |
| 86 | 86 | 0.516 |
| 87 | 87 | 0.674 |
| 88 | 88 | 0.629 |
| 89 | 89 | 0.418 |
| 9 | 9 | 0.732 |
| 90 | 90 | 0.664 |
| 91 | 91 | 0.813 |
| 92 | 92 | 0.36 |
| 93 | 93 | 0.891 |
| 94 | 94 | 0.141 |
| 95 | 95 | 0.644 |
| 96 | 96 | 0.786 |
| 97 | 97 | 0.225 |
| 98 | 98 | 0.644 |
| 99 | 99 | 0.903 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs12502
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
EFO:0002091 biological replicate
FF:0000010 human amniotic membrane cell- Amnion sample
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000723 (somatic stem cell)
0000048 (multi fate stem cell)
0000548 (animal cell)
0002320 (connective tissue cell)
0002371 (somatic cell)
0000219 (motile cell)
0000134 (mesenchymal cell)
0000349 (extraembryonic cell)
0000255 (eukaryotic cell)
0000034 (stem cell)
0002537 (amnion mesenchymal stem cell)
UBERON: Anatomy
0000468 (multi-cellular organism)
0000305 (amnion)
0002384 (connective tissue)
0000479 (tissue)
0004121 (ectoderm-derived structure)
0000064 (organ part)
0000062 (organ)
0004120 (mesoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0004923 (organ component layer)
0005631 (extraembryonic membrane)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0000478 (extraembryonic structure)
0010317 (germ layer / neural crest derived structure)
0000158 (membranous layer)
FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000092 (human amniotic membrane cell sample)
0000101 (sample by species)
0000001 (sample)
0000010 (human amniotic membrane cell- Amnion sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000134 (mesenchymal cell)
