FF:12236-129G4: Difference between revisions
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{{f5samples | {{f5samples | ||
|DRA_sample_Accession=CAGE@SAMD00005529 | |||
|accession_numbers=CAGE;DRX008538;DRR009410;DRZ000835;DRZ002220;DRZ012185;DRZ013570 | |||
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000305,UBERON:0002384,UBERON:0000479,UBERON:0004121,UBERON:0000064,UBERON:0000062,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0004923,UBERON:0005631,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0000478,UBERON:0010317,UBERON:0000158 | |ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000305,UBERON:0002384,UBERON:0000479,UBERON:0004121,UBERON:0000064,UBERON:0000062,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0004923,UBERON:0005631,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0000478,UBERON:0010317,UBERON:0000158 | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000723,CL:0000048,CL:0000548,CL:0002320,CL:0002371,CL:0000219,CL:0000134,CL:0000349,CL:0000255,CL:0000034,CL:0002537 | |ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000723,CL:0000048,CL:0000548,CL:0002320,CL:0002371,CL:0000219,CL:0000134,CL:0000349,CL:0000255,CL:0000034,CL:0002537 | ||
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|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|datafreeze_phase= | |data_phase=2 | ||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score=chr5:153857778..153857794,-!p1@HAND1!2.62!411.89!HAND1;;chr2:19558373..19558392,-!p1@OSR1!1.91!212.92!OSR1;;chr10:8096631..8096660,+!p1@GATA3!1.90!94.43!GATA3;;chr3:111314186..111314204,-!p1@ZBED2!1.85!69.19!ZBED2;;chr8:102504651..102504683,+!p1@GRHL2!1.82!65.63!GRHL2;;chr10:8096772..8096787,+!p2@GATA3!1.65!51.67!GATA3;;chr19:57352087..57352102,-!p1@PEG3,p1@ZIM2!1.62!40.39!PEG3;;chr2:46524897..46524911,+!p2@EPAS1!1.61!108.10!EPAS1;;chr20:55204351..55204377,+!p1@TFAP2C!1.54!42.76!TFAP2C;;chr4:188916918..188916942,+!p1@ZFP42!1.53!33.26!ZFP42;;chr1:209979467..209979494,-!p1@IRF6!1.50!34.45!IRF6;;chr6:10415276..10415341,-!p2@TFAP2A!1.47!34.45!TFAP2A;;chr1:201979743..201979762,+!p1@ELF3!1.46!27.91!ELF3;;chr10:48355030..48355090,+!p1@ZNF488!1.44!33.85!ZNF488;;chr8:102504690..102504704,+!p3@GRHL2!1.42!25.54!GRHL2;;chr5:153857800..153857812,-!p2@HAND1!1.41!24.65!HAND1;;chr8:102504979..102505010,+!p2@GRHL2!1.41!24.65!GRHL2;;chr5:2751762..2751784,-!p1@IRX2!1.36!21.98!IRX2;;chr11:120110863..120110908,+!p2@POU2F3!1.35!21.38!POU2F3;;chr4:174450089..174450153,-!p2@HAND2!1.34!20.79!HAND2;;chr6:10412600..10412637,-!p1@TFAP2A!1.33!33.26!TFAP2A;;chr1:38512457..38512474,-!p1@POU3F1!1.33!22.27!POU3F1;;chr5:3595934..3595957,+!p2@IRX1!1.25!16.63!IRX1;;chr4:174451370..174451387,-!p1@HAND2!1.23!16.04!HAND2;;chr5:174151612..174151633,+!p2@MSX2!1.20!14.85!MSX2;;chr3:111314230..111314241,-!p2@ZBED2!1.19!14.55!ZBED2;;chr5:174151553..174151610,+!p1@MSX2!1.17!23.16!MSX2;;chr6:126240356..126240379,+!p7@NCOA7!1.17!16.93!NCOA7;;chrY:2803415..2803468,+!p1@ZFY!1.17!13.66!ZFY;;chr19:17356189..17356221,-!p2@NR2F6!1.16!21.98!NR2F6;;chr11:120110844..120110861,+!p3@POU2F3!1.16!13.36!POU2F3;;chr2:46612891..46612907,+!p10@EPAS1!1.15!13.07!EPAS1;;chr6:10415484..10415508,-!p3@TFAP2A!1.14!12.77!TFAP2A;;chr1:201979703..201979721,+!p2@ELF3!1.14!12.77!ELF3;;chr3:24536253..24536328,-!p1@THRB!1.13!23.76!THRB;;chr10:8100691..8100732,+!p5@GATA3!1.12!12.18!GATA3;;chr2:238592039..238592054,+!p4@LRRFIP1!1.07!10.69!LRRFIP1;;chr3:24536485..24536500,-!p3@THRB!1.05!10.10!THRB;;chr2:46524878..46524891,+!p3@EPAS1!1.03!17.22!EPAS1;;chr2:68592406..68592424,+!p1@PLEK!1.03!9.80!PLEK;;chrY:21906594..21906622,-!p1@KDM5D!1.03!9.80!KDM5D;;chr6:10419768..10419819,-!p6@TFAP2A!1.03!9.80!TFAP2A;;chr2:46524537..46524553,+!p1@EPAS1!1.02!950.88!EPAS1;;chr6:19837592..19837621,+!p1@ID4!1.01!57.91!ID4;;chr5:2751785..2751808,-!p2@IRX2!1.01!9.21!IRX2;;chr1:164528410..164528428,+!p1@PBX1!1.00!69.79!PBX1;;chr6:126240380..126240430,+!p2@NCOA7!1.00!23.76!NCOA7;;chr20:18038521..18038571,-!p1@OVOL2!1.00!8.91!OVOL2;;chr5:3595977..3595999,+!p1@IRX1!0.97!8.32!IRX1;;chr8:49833978..49833996,-!p1@SNAI2!0.96!172.24!SNAI2;;chr10:8095593..8095625,+!p3@GATA3!0.96!9.50!GATA3;;chr5:153857819..153857824,-!p3@HAND1!0.96!8.02!HAND1;;chr16:29818199..29818216,+!p11@MAZ!0.95!13.07!MAZ;;chr8:102504932..102504952,+!p4@GRHL2!0.93!7.42!GRHL2;;chr12:53625966..53626012,-!p2@RARG!0.91!19.30!RARG;;chr9:99180617..99180658,-!p1@ZNF367!0.91!16.04!ZNF367;;chr16:85932760..85932775,+!p1@IRF8!0.91!7.13!IRF8;;chrX:56258844..56258882,+!p1@KLF8!0.90!9.80!KLF8;;chr19:22193731..22193751,-!p1@ZNF208!0.89!6.83!ZNF208;;chr5:3595961..3595975,+!p3@IRX1!0.89!6.83!IRX1;;chr10:8097321..8097348,+!p4@GATA3!0.89!6.83!GATA3;;chr8:49833948..49833973,-!p2@SNAI2!0.88!43.65!SNAI2;;chr17:7197911..7197964,-!p1@YBX2!0.88!6.53!YBX2;;chr19:22398550..22398579,-!p@chr19:22398550..22398579,-!0.88!6.53!ZNF676;;chr11:47400078..47400106,-!p1@SPI1!0.88!6.53!SPI1;;chr14:75988771..75988826,+!p1@BATF!0.87!8.61!BATF;;chr12:54778471..54778528,-!p1@ZNF385A!0.86!6.24!ZNF385A;;chr9:102584159..102584174,+!p2@NR4A3!0.85!11.28!NR4A3;;chr9:99180662..99180690,-!p2@ZNF367!0.85!8.61!ZNF367;;chr20:32274179..32274213,-!p1@E2F1!0.84!41.58!E2F1;;chr6:85474299..85474324,-!p1@TBX18!0.84!10.99!TBX18;;chr15:96874927..96874938,+!p8@NR2F2!0.83!13.07!NR2F2;;chr20:2673383..2673441,+!p1@EBF4!0.83!9.50!EBF4;;chr2:5832508..5832524,+!p1@SOX11!0.82!5.64!SOX11;;chr3:32023232..32023273,+!p1@ZNF860!0.81!8.02!ZNF860;;chr6:85473156..85473210,-!p2@TBX18!0.81!6.83!TBX18;;chr9:110250697..110250738,-!p2@KLF4!0.81!6.53!KLF4;;chr2:46524865..46524870,+!p9@EPAS1!0.80!6.24!EPAS1;;chr12:81101472..81101483,+!p2@MYF6!0.80!5.35!MYF6;;chr6:10412576..10412599,-!p5@TFAP2A!0.80!5.35!TFAP2A;;chr13:73633131..73633149,+!p1@KLF5!0.79!59.99!KLF5;;chr5:176738887..176738934,-!p1@MXD3!0.78!36.82!MXD3;;chr6:10413188..10413249,-!p7@TFAP2A!0.78!5.05!TFAP2A;;chr4:299227..299272,-!p1@ZNF732!0.78!5.05!ZNF732;;chr15:60884706..60884743,-!p1@RORA!0.77!27.91!RORA;;chr19:33793430..33793447,-!p1@CEBPA!0.77!22.57!CEBPA;;chr4:149363494..149363543,-!p1@NR3C2!0.76!4.75!NR3C2;;chr6:10419824..10419840,-!p9@TFAP2A!0.76!4.75!TFAP2A;;chr13:45048432..45048452,-!p29@TSC22D1!0.76!4.75!TSC22D1;;chr16:29817841..29817865,+!p1@MAZ!0.75!109.88!MAZ;;chr20:39317868..39317884,-!p1@MAFB!0.74!59.99!MAFB;;chr14:29235961..29236008,+!p1@FOXG1!0.74!4.45!FOXG1;;chr13:45010939..45011033,-!p1@TSC22D1!0.73!324.29!TSC22D1;;chr1:164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| |expression_enrichment_score=chr5:153857778..153857794,-!p1@HAND1!2.62!411.89!HAND1;;chr2:19558373..19558392,-!p1@OSR1!1.91!212.92!OSR1;;chr10:8096631..8096660,+!p1@GATA3!1.90!94.43!GATA3;;chr3:111314186..111314204,-!p1@ZBED2!1.85!69.19!ZBED2;;chr8:102504651..102504683,+!p1@GRHL2!1.82!65.63!GRHL2;;chr10:8096772..8096787,+!p2@GATA3!1.65!51.67!GATA3;;chr19:57352087..57352102,-!p1@PEG3,p1@ZIM2!1.62!40.39!PEG3;;chr2:46524897..46524911,+!p2@EPAS1!1.61!108.10!EPAS1;;chr20:55204351..55204377,+!p1@TFAP2C!1.54!42.76!TFAP2C;;chr4:188916918..188916942,+!p1@ZFP42!1.53!33.26!ZFP42;;chr1:209979467..209979494,-!p1@IRF6!1.50!34.45!IRF6;;chr6:10415276..10415341,-!p2@TFAP2A!1.47!34.45!TFAP2A;;chr1:201979743..201979762,+!p1@ELF3!1.46!27.91!ELF3;;chr10:48355030..48355090,+!p1@ZNF488!1.44!33.85!ZNF488;;chr8:102504690..102504704,+!p3@GRHL2!1.42!25.54!GRHL2;;chr5:153857800..153857812,-!p2@HAND1!1.41!24.65!HAND1;;chr8:102504979..102505010,+!p2@GRHL2!1.41!24.65!GRHL2;;chr5:2751762..2751784,-!p1@IRX2!1.36!21.98!IRX2;;chr11:120110863..120110908,+!p2@POU2F3!1.35!21.38!POU2F3;;chr4:174450089..174450153,-!p2@HAND2!1.34!20.79!HAND2;;chr6:10412600..10412637,-!p1@TFAP2A!1.33!33.26!TFAP2A;;chr1:38512457..38512474,-!p1@POU3F1!1.33!22.27!POU3F1;;chr5:3595934..3595957,+!p2@IRX1!1.25!16.63!IRX1;;chr4:174451370..174451387,-!p1@HAND2!1.23!16.04!HAND2;;chr5:174151612..174151633,+!p2@MSX2!1.20!14.85!MSX2;;chr3:111314230..111314241,-!p2@ZBED2!1.19!14.55!ZBED2;;chr5:174151553..174151610,+!p1@MSX2!1.17!23.16!MSX2;;chr6:126240356..126240379,+!p7@NCOA7!1.17!16.93!NCOA7;;chrY:2803415..2803468,+!p1@ZFY!1.17!13.66!ZFY;;chr19:17356189..17356221,-!p2@NR2F6!1.16!21.98!NR2F6;;chr11:120110844..120110861,+!p3@POU2F3!1.16!13.36!POU2F3;;chr2:46612891..46612907,+!p10@EPAS1!1.15!13.07!EPAS1;;chr6:10415484..10415508,-!p3@TFAP2A!1.14!12.77!TFAP2A;;chr1:201979703..201979721,+!p2@ELF3!1.14!12.77!ELF3;;chr3:24536253..24536328,-!p1@THRB!1.13!23.76!THRB;;chr10:8100691..8100732,+!p5@GATA3!1.12!12.18!GATA3;;chr2:238592039..238592054,+!p4@LRRFIP1!1.07!10.69!LRRFIP1;;chr3:24536485..24536500,-!p3@THRB!1.05!10.10!THRB;;chr2:46524878..46524891,+!p3@EPAS1!1.03!17.22!EPAS1;;chr2:68592406..68592424,+!p1@PLEK!1.03!9.80!PLEK;;chrY:21906594..21906622,-!p1@KDM5D!1.03!9.80!KDM5D;;chr6:10419768..10419819,-!p6@TFAP2A!1.03!9.80!TFAP2A;;chr2:46524537..46524553,+!p1@EPAS1!1.02!950.88!EPAS1;;chr6:19837592..19837621,+!p1@ID4!1.01!57.91!ID4;;chr5:2751785..2751808,-!p2@IRX2!1.01!9.21!IRX2;;chr1:164528410..164528428,+!p1@PBX1!1.00!69.79!PBX1;;chr6:126240380..126240430,+!p2@NCOA7!1.00!23.76!NCOA7;;chr20:18038521..18038571,-!p1@OVOL2!1.00!8.91!OVOL2;;chr5:3595977..3595999,+!p1@IRX1!0.97!8.32!IRX1;;chr8:49833978..49833996,-!p1@SNAI2!0.96!172.24!SNAI2;;chr10:8095593..8095625,+!p3@GATA3!0.96!9.50!GATA3;;chr5:153857819..153857824,-!p3@HAND1!0.96!8.02!HAND1;;chr16:29818199..29818216,+!p11@MAZ!0.95!13.07!MAZ;;chr8:102504932..102504952,+!p4@GRHL2!0.93!7.42!GRHL2;;chr12:53625966..53626012,-!p2@RARG!0.91!19.30!RARG;;chr9:99180617..99180658,-!p1@ZNF367!0.91!16.04!ZNF367;;chr16:85932760..85932775,+!p1@IRF8!0.91!7.13!IRF8;;chrX:56258844..56258882,+!p1@KLF8!0.90!9.80!KLF8;;chr19:22193731..22193751,-!p1@ZNF208!0.89!6.83!ZNF208;;chr5:3595961..3595975,+!p3@IRX1!0.89!6.83!IRX1;;chr10:8097321..8097348,+!p4@GATA3!0.89!6.83!GATA3;;chr8:49833948..49833973,-!p2@SNAI2!0.88!43.65!SNAI2;;chr17:7197911..7197964,-!p1@YBX2!0.88!6.53!YBX2;;chr19:22398550..22398579,-!p@chr19:22398550..22398579,-!0.88!6.53!ZNF676;;chr11:47400078..47400106,-!p1@SPI1!0.88!6.53!SPI1;;chr14:75988771..75988826,+!p1@BATF!0.87!8.61!BATF;;chr12:54778471..54778528,-!p1@ZNF385A!0.86!6.24!ZNF385A;;chr9:102584159..102584174,+!p2@NR4A3!0.85!11.28!NR4A3;;chr9:99180662..99180690,-!p2@ZNF367!0.85!8.61!ZNF367;;chr20:32274179..32274213,-!p1@E2F1!0.84!41.58!E2F1;;chr6:85474299..85474324,-!p1@TBX18!0.84!10.99!TBX18;;chr15:96874927..96874938,+!p8@NR2F2!0.83!13.07!NR2F2;;chr20:2673383..2673441,+!p1@EBF4!0.83!9.50!EBF4;;chr2:5832508..5832524,+!p1@SOX11!0.82!5.64!SOX11;;chr3:32023232..32023273,+!p1@ZNF860!0.81!8.02!ZNF860;;chr6:85473156..85473210,-!p2@TBX18!0.81!6.83!TBX18;;chr9:110250697..110250738,-!p2@KLF4!0.81!6.53!KLF4;;chr2:46524865..46524870,+!p9@EPAS1!0.80!6.24!EPAS1;;chr12:81101472..81101483,+!p2@MYF6!0.80!5.35!MYF6;;chr6:10412576..10412599,-!p5@TFAP2A!0.80!5.35!TFAP2A;;chr13:73633131..73633149,+!p1@KLF5!0.79!59.99!KLF5;;chr5:176738887..176738934,-!p1@MXD3!0.78!36.82!MXD3;;chr6:10413188..10413249,-!p7@TFAP2A!0.78!5.05!TFAP2A;;chr4:299227..299272,-!p1@ZNF732!0.78!5.05!ZNF732;;chr15:60884706..60884743,-!p1@RORA!0.77!27.91!RORA;;chr19:33793430..33793447,-!p1@CEBPA!0.77!22.57!CEBPA;;chr4:149363494..149363543,-!p1@NR3C2!0.76!4.75!NR3C2;;chr6:10419824..10419840,-!p9@TFAP2A!0.76!4.75!TFAP2A;;chr13:45048432..45048452,-!p29@TSC22D1!0.76!4.75!TSC22D1;;chr16:29817841..29817865,+!p1@MAZ!0.75!109.88!MAZ;;chr20:39317868..39317884,-!p1@MAFB!0.74!59.99!MAFB;;chr14:29235961..29236008,+!p1@FOXG1!0.74!4.45!FOXG1;;chr13:45010939..45011033,-!p1@TSC22D1!0.73!324.29!TSC22D1;;chr1:164528445..164528459,+!p2@PBX1!0.73!14.85!PBX1;;chr19:22235279..22235301,+!p1@ZNF257!0.72!8.61!ZNF257;;chr15:96869511..96869525,+!p16@NR2F2!0.72!4.75!NR2F2;;chr1:164528384..164528409,+!p3@PBX1!0.71!14.25!PBX1;;chr20:32274150..32274166,-!p2@E2F1!0.71!8.32!E2F1;;chr15:96869255..96869291,+!p6@NR2F2!0.71!8.02!NR2F2;;chr17:38821373..38821440,-!p1@KRT222,p2@SMARCE1!0.71!4.16!SMARCE1;;chrX:56258900..56258917,+!p4@KLF8!0.71!4.16!KLF8;;chr19:49140609..49140643,-!p1@DBP!0.70!25.24!DBP;;chr12:80084737..80084763,-!p3@PAWR!0.70!16.63!PAWR;;chr2:46602879..46602899,+!p8@EPAS1!0.70!5.05!EPAS1;;chr3:170075124..170075136,+!p4@SKIL!0.69!5.64!SKIL;;chr2:10091815..10091864,+!p1@GRHL1!0.69!5.35!GRHL1;;chr2:16080659..16080685,+!p1@MYCN!0.69!3.86!MYCN;;chr17:7493405..7493419,-!p1@SOX15!0.69!3.86!SOX15;;chr7:1577899..1577943,+!p3@MAFK!0.69!3.86!MAFK;;chr9:110252035..110252057,-!p1@KLF4!0.68!69.49!KLF4;;chr17:53342311..53342400,+!p1@HLF!0.68!4.45!HLF;;chr19:45971246..45971265,+!p1@FOSB!0.67!79.59!FOSB;;chr11:2292226..2292270,-!p1@ASCL2!0.66!3.56!ASCL2;;chr14:33403881..33403924,+!p1@NPAS3!0.66!3.56!NPAS3;;chr7:63505799..63505904,+!p1@ZNF727!0.66!3.56!ZNF727;;chr22:21771656..21771662,+!p1@HIC2!0.66!3.56!HIC2;;chr12:80084303..80084332,-!p1@PAWR!0.65!23.46!PAWR;;chr2:238600933..238600985,+!p3@LRRFIP1!0.65!21.98!LRRFIP1;;chr19:36391434..36391450,-!p1@NFKBID!0.65!7.42!NFKBID;;chr19:12035937..12035969,+!p3@ZNF700,p4@ZNF763!0.64!4.75!ZNF700;;chr18:6414884..6414942,-!p1@L3MBTL4!0.64!4.45!L3MBTL4;;chr6:126240442..126240459,+!p4@NCOA7!0.64!4.45!NCOA7;;chr8:57123815..57123867,-!p1@PLAG1!0.63!15.44!PLAG1;;chr8:102217679..102217719,-!p2@ZNF706!0.63!13.07!ZNF706;;chr17:38256799..38256815,-!p3@NR1D1!0.63!6.53!NR1D1;;chr2:214015343..214015366,-!p3@IKZF2!0.63!3.27!IKZF2;;chr2:5832493..5832507,+!p2@SOX11!0.63!3.27!SOX11;;chr3:24536231..24536249,-!p4@THRB!0.63!3.27!THRB;;chr3:24536332..24536358,-!p2@THRB!0.63!3.27!THRB;;chr4:149363475..149363492,-!p2@NR3C2!0.63!3.27!NR3C2;;chr4:57522598..57522664,-!p3@HOPX!0.63!3.27!HOPX;;chr10:114710430..114710470,+!p30@TCF7L2!0.63!3.27!TCF7L2;;chr5:142783175..142783297,-!p1@NR3C1!0.62!52.27!NR3C1;;chr19:11959532..11959593,+!p1@ZNF439!0.62!14.25!ZNF439;;chr15:67418047..67418093,+!p4@SMAD3!0.62!4.16!SMAD3;;chr18:22932080..22932170,-!p1@ZNF521!0.61!15.44!ZNF521;;chr1:41174988..41175047,+!p4@NFYC!0.61!9.21!NFYC;;chr19:53496768..53496799,-!p1@ZNF702P!0.60!5.05!ZNF702P;;chrX:107018969..107019024,-!p6@TSC22D3!0.60!4.45!TSC22D3;;chr2:66662895..66662907,+!p3@MEIS1!0.60!3.86!MEIS1;;chr2:238600998..238601013,+!p5@LRRFIP1!0.60!2.97!LRRFIP1;;chr1:32930647..32930684,+!p1@ZBTB8B,p4@ZBTB8A!0.60!2.97!ZBTB8B;;chr6:28048343..28048354,+!p1@ZNF165!0.60!2.97!ZNF165;;chr11:65554528..65554546,+!p1@OVOL1!0.60!2.97!OVOL1;;chr22:41777927..41777971,+!p1@TEF!0.59!29.40!TEF;;chr3:71630690..71630750,-!p11@FOXP1!0.59!5.35!FOXP1;;chr15:96869292..96869320,+!p15@NR2F2!0.59!4.45!NR2F2;;chr2:46602901..46602926,+!p7@EPAS1!0.59!4.16!EPAS1;;chrX:128657457..128657475,-!p1@SMARCA1!0.58!39.50!SMARCA1;;chr19:12146483..12146546,-!p1@ZNF433!0.58!12.18!ZNF433;;chr9:99180597..99180614,-!p3@ZNF367!0.58!3.27!ZNF367;;chr19:926001..926046,+!p1@ARID3A!0.57!11.28!ARID3A;;chr2:46612334..46612349,+!p6@EPAS1!0.57!3.86!EPAS1;;chr6:35465058..35465077,-!p2@TEAD3!0.57!2.97!TEAD3;;chr6:35464817..35464894,-!p1@TEAD3!0.56!50.48!TEAD3;;chr5:178322893..178322931,+!p1@ZFP2!0.56!4.16!ZFP2;;chr7:15726296..15726315,-!p1@MEOX2!0.56!2.67!MEOX2;;chr7:50343634..50343717,+!p2@IKZF1!0.56!2.67!IKZF1;;chr11:47400062..47400077,-!p2@SPI1!0.56!2.67!SPI1;;chr12:54410664..54410684,+!p1@HOXC4,p1@HOXC5,p1@HOXC6!0.56!2.67!HOXC5;;chr13:72441074..72441172,-!p2@DACH1!0.56!2.67!DACH1;;chr19:22966925..22966958,-!p1@ZNF99!0.56!2.67!ZNF99;;chr2:114036488..114036504,-!p1@PAX8!0.56!2.67!PAX8;;chr1:244214577..244214593,+!p1@ZNF238!0.56!2.67!ZNF238;;chr3:128206762..128206781,-!p2@GATA2!0.55!19.90!GATA2;;chr10:63809013..63809041,+!p3@ARID5B!0.55!17.52!ARID5B;;chr13:74708504..74708549,-!p1@KLF12!0.55!14.25!KLF12;;chr6:108881012..108881034,+!p3@FOXO3!0.55!10.99!FOXO3;;chr17:38465441..38465481,+!p6@RARA!0.55!3.27!RARA;;chr6:168227552..168227609,+!p1@MLLT4!0.54!25.24!MLLT4;;chr19:58220517..58220583,-!p1@ZNF154!0.54!9.50!ZNF154;;chr20:45142154..45142227,-!p1@ZNF334!0.54!5.64!ZNF334;;chr3:170075103..170075114,+!p5@SKIL!0.54!3.56!SKIL;;chr6:10412392..10412409,-!p4@TFAP2A!0.54!2.97!TFAP2A;;chr19:45908292..45908374,-!p1@PPP1R13L!0.53!26.73!PPP1R13L;;chr9:137217986..137218049,+!p3@RXRA!0.53!8.32!RXRA;;chr18:42260059..42260132,+!p1@SETBP1!0.53!4.45!SETBP1;;chr19:37464453..37464515,+!p4@ZNF568!0.53!2.38!ZNF568;;chr1:209979411..209979433,-!p2@IRF6!0.53!2.38!IRF6;;chr5:138643069..138643082,+!p13@MATR3!0.53!2.38!MATR3;;chr7:27142290..27142310,-!p1@HOXA2!0.53!2.38!HOXA2;;chr7:31380292..31380351,-!p1@NEUROD6!0.53!2.38!NEUROD6;;chr10:131762504..131762555,-!p1@EBF3!0.53!2.38!EBF3;;chr10:8097357..8097368,+!p15@GATA3!0.53!2.38!GATA3;;chr11:85393886..85393913,-!p3@CREBZF!0.53!2.38!CREBZF;;chrX:56258885..56258896,+!p5@KLF8!0.53!2.38!KLF8;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| ||
|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000222;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002537;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000158;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000305;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0004871 | |||
|ffid_belonging_in_development=CL:0000134 | |||
|fonse_cell_line= | |fonse_cell_line= | ||
|fonse_cell_line_closure= | |fonse_cell_line_closure= | ||
Line 37: | Line 42: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/amniotic%2520membrane%2520cells%252c%2520donor2.CNhs12503.12236-129G4.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/amniotic%2520membrane%2520cells%252c%2520donor2.CNhs12503.12236-129G4.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/amniotic%2520membrane%2520cells%252c%2520donor2.CNhs12503.12236-129G4.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/amniotic%2520membrane%2520cells%252c%2520donor2.CNhs12503.12236-129G4.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/amniotic%2520membrane%2520cells%252c%2520donor2.CNhs12503.12236-129G4.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:12236-129G4 | |id=FF:12236-129G4 | ||
|is_a=EFO:0002091;;FF:0000010 | |is_a=EFO:0002091;;FF:0000010 | ||
|is_obsolete= | |is_obsolete= | ||
|library_id=CNhs12503 | |||
|library_id_phase_based=2:CNhs12503 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;12236 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;12236 | |||
|name=amniotic membrane cells, donor2 | |name=amniotic membrane cells, donor2 | ||
|namespace= | |namespace= | ||
Line 45: | Line 61: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs12503,LSID918,release012,COMPLETED | |profile_hcage=CNhs12503,LSID918,release012,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=,,, | |profile_srnaseq=,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
|repeat_enrich_byfamily=0,0,0,0,0,0,0,0.0421510407260616,0.11292814946238,0.0626571426621743,-0.112393923149098,0,0,0,0,0,0,0,0,0,0,0,0,0,0.123344183199025,0,0,0,0,0,-0.0979578962680575,0,0,-0.0200284403164819,0,0,0,0,0,0,0,0,0,0,0.11292814946238,0,0.0488979545389037,0,0,0,0,0,0,0,0,0.178254049699614,0,0,0,0,0,0,0,0.105476709569843,0,0.11292814946238,-0.097343627213097,0,0,0,0,0,0,0,0,0,0,0.528366088282007,0,0,0.11292814946238,0,0,0,0,0,0,0,0,0,0.000950751479320777,0,0.05646407473119,0,0,-0.0185592481759963,-0.154733327964679,0.05646407473119,0,0,0.11292814946238,0.104433719574741,-0.082013126069705,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0399095191912707,0,0,0,0.0786605158521442,0.0500232168050857,0,0,0,0,0,0 | |||
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| |||
|rna_box=129 | |rna_box=129 | ||
|rna_catalog_number= | |rna_catalog_number= | ||
Line 60: | Line 79: | ||
|rna_weight_ug=4.86972 | |rna_weight_ug=4.86972 | ||
|sample_age= | |sample_age= | ||
|sample_category=primary cells | |||
|sample_cell_catalog= | |sample_cell_catalog= | ||
|sample_cell_line= | |sample_cell_line= | ||
Line 81: | Line 101: | ||
|top_motifs=NKX2-1,4:1.90011496296;PAX4:1.80147031272;FOXM1:1.69754144552;XCPE1{core}:1.66918982315;FOXL1:1.54267771411;RORA:1.42610931282;SNAI1..3:1.38995863924;ZNF384:1.33894271031;AIRE:1.23005089367;GCM1,2:1.21613351658;FOXO1,3,4:1.19667151609;TP53:1.15501124441;ADNP_IRX_SIX_ZHX:1.14717346896;GFI1:1.03176557181;MAZ:1.0178351881;HAND1,2:0.985151120712;EP300:0.978525934352;ZEB1:0.975213247641;HOX{A5,B5}:0.973855933511;HOX{A6,A7,B6,B7}:0.954305359837;TBP:0.944042478116;TEAD1:0.935316125698;PAX5:0.883785238406;SP1:0.865994448357;ZNF148:0.850276574259;E2F1..5:0.805692734198;PPARG:0.791318854926;FOX{I1,J2}:0.778458973267;TFAP2{A,C}:0.753446711525;CDC5L:0.693202016959;NKX2-3_NKX2-5:0.667426831485;NFY{A,B,C}:0.666270089255;POU1F1:0.630390137003;HMGA1,2:0.567569553052;GLI1..3:0.559676970781;STAT1,3:0.548551609661;PBX1:0.507081191136;BPTF:0.504053397027;FOXA2:0.501209811195;TFCP2:0.49156793502;RBPJ:0.481105745195;PAX8:0.446970895098;TBX4,5:0.416262024342;NRF1:0.411386269399;DBP:0.385910824053;SMAD1..7,9:0.383421381781;FOXN1:0.379216629543;OCT4_SOX2{dimer}:0.367449439905;FOS_FOS{B,L1}_JUN{B,D}:0.3554253361;ZNF143:0.35317219062;MED-1{core}:0.340770199875;FOX{D1,D2}:0.339317767702;HLF:0.336768180987;HIF1A:0.316774014812;EVI1:0.311528880785;IKZF1:0.297919182969;POU2F1..3:0.294272997134;MYOD1:0.28784465097;NKX2-2,8:0.263609906103;ZIC1..3:0.258614997561;HSF1,2:0.253266723372;ATF2:0.246576769484;BACH2:0.242612330144;TFDP1:0.239085195143;NANOG{mouse}:0.232339183528;ZNF238:0.222494312891;HMX1:0.213997193548;GTF2I:0.212061397696;JUN:0.205243885763;SREBF1,2:0.19404731155;SOX5:0.183585465699;MZF1:0.180611681721;MTF1:0.164393629886;RFX2..5_RFXANK_RFXAP:0.159331402937;ESR1:0.156483227611;ELK1,4_GABP{A,B1}:0.122514507049;DMAP1_NCOR{1,2}_SMARC:0.121573889906;GATA6:0.113663546026;ALX4:0.102934709588;ESRRA:0.0816914845738;UFEwm:0.0775974738024;PATZ1:0.0682554710378;TLX1..3_NFIC{dimer}:0.0605359829233;ZBTB6:0.0584833393372;POU6F1:0.0541179610717;ATF6:0.0408765760364;HIC1:0.0305260487542;TFAP2B:0.00881689216965;LEF1_TCF7_TCF7L1,2:0.00861376168946;FOSL2:0.0079691593153;MEF2{A,B,C,D}:-0.00257077081635;NFE2:-0.0108999933554;PRRX1,2:-0.0167306876226;RFX1:-0.0251355215276;NR3C1:-0.0340510160727;MYB:-0.0513747640822;MYBL2:-0.0525930940554;ZNF423:-0.0676444239415;SOX{8,9,10}:-0.0708270264256;RUNX1..3:-0.073048668965;IRF7:-0.0739513908997;EBF1:-0.0852619774226;EN1,2:-0.0903567969501;NFKB1_REL_RELA:-0.106872115086;STAT5{A,B}:-0.111579344246;LHX3,4:-0.11986319467;EGR1..3:-0.120309979339;HNF1A:-0.121337487462;ELF1,2,4:-0.121499608989;GZF1:-0.130035760182;PDX1:-0.147905769358;NHLH1,2:-0.149937376198;TAL1_TCF{3,4,12}:-0.152492653036;HOXA9_MEIS1:-0.156004621533;SOX2:-0.16143867417;RXRA_VDR{dimer}:-0.167768406187;XBP1:-0.185574943635;TGIF1:-0.204333465601;MTE{core}:-0.205915458008;SPZ1:-0.209150811143;HOX{A4,D4}:-0.212076897681;SOX17:-0.214791681749;MYFfamily:-0.221261374473;ATF4:-0.231427342865;PAX1,9:-0.237796620917;NFIL3:-0.24010374499;PAX2:-0.256255291113;ARID5B:-0.2944528023;SPI1:-0.297328418285;GFI1B:-0.303676802824;FOXQ1:-0.305336478107;ETS1,2:-0.310519008961;NKX3-2:-0.323942603141;PITX1..3:-0.325377320914;bHLH_family:-0.34219878304;ALX1:-0.348076149626;CRX:-0.350874769584;POU3F1..4:-0.351517753739;NR6A1:-0.368498456372;KLF4:-0.375472329637;YY1:-0.377882218828;BREu{core}:-0.377910688988;IRF1,2:-0.386021799125;ATF5_CREB3:-0.386386950743;SPIB:-0.391585042554;CDX1,2,4:-0.402160908025;FOXP3:-0.406746093413;ONECUT1,2:-0.439012881488;HNF4A_NR2F1,2:-0.442666394913;NR1H4:-0.455592179825;TLX2:-0.459512801692;RXR{A,B,G}:-0.468457134127;CUX2:-0.494810143155;GTF2A1,2:-0.498319245107;HBP1_HMGB_SSRP1_UBTF:-0.501115677693;SRF:-0.528625162546;POU5F1:-0.529351627252;ZFP161:-0.532898070249;VSX1,2:-0.546455779914;REST:-0.546492028371;CEBPA,B_DDIT3:-0.546554740237;NFATC1..3:-0.54780464619;AHR_ARNT_ARNT2:-0.551152591948;FOXP1:-0.562510276985;GATA4:-0.584190007749;TFAP4:-0.586543403612;FOX{F1,F2,J1}:-0.624481695235;RREB1:-0.626423729928;NFE2L2:-0.665965151155;CREB1:-0.666626106041;AR:-0.672058306878;PAX6:-0.678320220458;LMO2:-0.690147543372;NANOG:-0.763595232326;NKX6-1,2:-0.775157969;TEF:-0.803991203208;PRDM1:-0.92166311614;ZBTB16:-0.921921162437;FOXD3:-1.00813294629;PAX3,7:-1.02700282083;HES1:-1.09928665269;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-1.10390163011;IKZF2:-1.12459944253;MAFB:-1.1902351521;STAT2,4,6:-1.23348960006;NR5A1,2:-1.26489300105;TOPORS:-1.30491066372;NFE2L1:-1.32205923782;NKX3-1:-1.34367023572;T:-1.55979782642;RXR{A,B,G}_{NR1H2,PPAR}dimers:-1.66647220417;NFIX:-1.9953274356 | |top_motifs=NKX2-1,4:1.90011496296;PAX4:1.80147031272;FOXM1:1.69754144552;XCPE1{core}:1.66918982315;FOXL1:1.54267771411;RORA:1.42610931282;SNAI1..3:1.38995863924;ZNF384:1.33894271031;AIRE:1.23005089367;GCM1,2:1.21613351658;FOXO1,3,4:1.19667151609;TP53:1.15501124441;ADNP_IRX_SIX_ZHX:1.14717346896;GFI1:1.03176557181;MAZ:1.0178351881;HAND1,2:0.985151120712;EP300:0.978525934352;ZEB1:0.975213247641;HOX{A5,B5}:0.973855933511;HOX{A6,A7,B6,B7}:0.954305359837;TBP:0.944042478116;TEAD1:0.935316125698;PAX5:0.883785238406;SP1:0.865994448357;ZNF148:0.850276574259;E2F1..5:0.805692734198;PPARG:0.791318854926;FOX{I1,J2}:0.778458973267;TFAP2{A,C}:0.753446711525;CDC5L:0.693202016959;NKX2-3_NKX2-5:0.667426831485;NFY{A,B,C}:0.666270089255;POU1F1:0.630390137003;HMGA1,2:0.567569553052;GLI1..3:0.559676970781;STAT1,3:0.548551609661;PBX1:0.507081191136;BPTF:0.504053397027;FOXA2:0.501209811195;TFCP2:0.49156793502;RBPJ:0.481105745195;PAX8:0.446970895098;TBX4,5:0.416262024342;NRF1:0.411386269399;DBP:0.385910824053;SMAD1..7,9:0.383421381781;FOXN1:0.379216629543;OCT4_SOX2{dimer}:0.367449439905;FOS_FOS{B,L1}_JUN{B,D}:0.3554253361;ZNF143:0.35317219062;MED-1{core}:0.340770199875;FOX{D1,D2}:0.339317767702;HLF:0.336768180987;HIF1A:0.316774014812;EVI1:0.311528880785;IKZF1:0.297919182969;POU2F1..3:0.294272997134;MYOD1:0.28784465097;NKX2-2,8:0.263609906103;ZIC1..3:0.258614997561;HSF1,2:0.253266723372;ATF2:0.246576769484;BACH2:0.242612330144;TFDP1:0.239085195143;NANOG{mouse}:0.232339183528;ZNF238:0.222494312891;HMX1:0.213997193548;GTF2I:0.212061397696;JUN:0.205243885763;SREBF1,2:0.19404731155;SOX5:0.183585465699;MZF1:0.180611681721;MTF1:0.164393629886;RFX2..5_RFXANK_RFXAP:0.159331402937;ESR1:0.156483227611;ELK1,4_GABP{A,B1}:0.122514507049;DMAP1_NCOR{1,2}_SMARC:0.121573889906;GATA6:0.113663546026;ALX4:0.102934709588;ESRRA:0.0816914845738;UFEwm:0.0775974738024;PATZ1:0.0682554710378;TLX1..3_NFIC{dimer}:0.0605359829233;ZBTB6:0.0584833393372;POU6F1:0.0541179610717;ATF6:0.0408765760364;HIC1:0.0305260487542;TFAP2B:0.00881689216965;LEF1_TCF7_TCF7L1,2:0.00861376168946;FOSL2:0.0079691593153;MEF2{A,B,C,D}:-0.00257077081635;NFE2:-0.0108999933554;PRRX1,2:-0.0167306876226;RFX1:-0.0251355215276;NR3C1:-0.0340510160727;MYB:-0.0513747640822;MYBL2:-0.0525930940554;ZNF423:-0.0676444239415;SOX{8,9,10}:-0.0708270264256;RUNX1..3:-0.073048668965;IRF7:-0.0739513908997;EBF1:-0.0852619774226;EN1,2:-0.0903567969501;NFKB1_REL_RELA:-0.106872115086;STAT5{A,B}:-0.111579344246;LHX3,4:-0.11986319467;EGR1..3:-0.120309979339;HNF1A:-0.121337487462;ELF1,2,4:-0.121499608989;GZF1:-0.130035760182;PDX1:-0.147905769358;NHLH1,2:-0.149937376198;TAL1_TCF{3,4,12}:-0.152492653036;HOXA9_MEIS1:-0.156004621533;SOX2:-0.16143867417;RXRA_VDR{dimer}:-0.167768406187;XBP1:-0.185574943635;TGIF1:-0.204333465601;MTE{core}:-0.205915458008;SPZ1:-0.209150811143;HOX{A4,D4}:-0.212076897681;SOX17:-0.214791681749;MYFfamily:-0.221261374473;ATF4:-0.231427342865;PAX1,9:-0.237796620917;NFIL3:-0.24010374499;PAX2:-0.256255291113;ARID5B:-0.2944528023;SPI1:-0.297328418285;GFI1B:-0.303676802824;FOXQ1:-0.305336478107;ETS1,2:-0.310519008961;NKX3-2:-0.323942603141;PITX1..3:-0.325377320914;bHLH_family:-0.34219878304;ALX1:-0.348076149626;CRX:-0.350874769584;POU3F1..4:-0.351517753739;NR6A1:-0.368498456372;KLF4:-0.375472329637;YY1:-0.377882218828;BREu{core}:-0.377910688988;IRF1,2:-0.386021799125;ATF5_CREB3:-0.386386950743;SPIB:-0.391585042554;CDX1,2,4:-0.402160908025;FOXP3:-0.406746093413;ONECUT1,2:-0.439012881488;HNF4A_NR2F1,2:-0.442666394913;NR1H4:-0.455592179825;TLX2:-0.459512801692;RXR{A,B,G}:-0.468457134127;CUX2:-0.494810143155;GTF2A1,2:-0.498319245107;HBP1_HMGB_SSRP1_UBTF:-0.501115677693;SRF:-0.528625162546;POU5F1:-0.529351627252;ZFP161:-0.532898070249;VSX1,2:-0.546455779914;REST:-0.546492028371;CEBPA,B_DDIT3:-0.546554740237;NFATC1..3:-0.54780464619;AHR_ARNT_ARNT2:-0.551152591948;FOXP1:-0.562510276985;GATA4:-0.584190007749;TFAP4:-0.586543403612;FOX{F1,F2,J1}:-0.624481695235;RREB1:-0.626423729928;NFE2L2:-0.665965151155;CREB1:-0.666626106041;AR:-0.672058306878;PAX6:-0.678320220458;LMO2:-0.690147543372;NANOG:-0.763595232326;NKX6-1,2:-0.775157969;TEF:-0.803991203208;PRDM1:-0.92166311614;ZBTB16:-0.921921162437;FOXD3:-1.00813294629;PAX3,7:-1.02700282083;HES1:-1.09928665269;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-1.10390163011;IKZF2:-1.12459944253;MAFB:-1.1902351521;STAT2,4,6:-1.23348960006;NR5A1,2:-1.26489300105;TOPORS:-1.30491066372;NFE2L1:-1.32205923782;NKX3-1:-1.34367023572;T:-1.55979782642;RXR{A,B,G}_{NR1H2,PPAR}dimers:-1.66647220417;NFIX:-1.9953274356 | ||
|xref= | |xref= | ||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:12236-129G4;search_select_hide=table117:FF:12236-129G4 | |||
}} | }} |
Latest revision as of 18:36, 4 June 2020
Name: | amniotic membrane cells, donor2 |
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Species: | Human (Homo sapiens) |
Library ID: | CNhs12503 |
Sample type: | primary cells |
Genomic View: | UCSC |
RefEX: | Specific genes |
FANTOM CAT: | 1, 2, 3, 4, 5 |
CAGEd-oPOSSUM: | link |
ZENBU report : | link |
Additional information | ||||||||||||||||||||||||||||
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Sample information
RNA information
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CAGE Accession numbers | ||||||||||||||||||||||||||||||||||||||||||||||
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Download raw sequence, BAM & CTSS | ||||||||||||||
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs12503
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs12503
Novel motif | Logo | P-value |
---|---|---|
1 | 1 | 0.0729 |
10 | 10 | 0.51 |
100 | 100 | 0.678 |
101 | 101 | 0.593 |
102 | 102 | 0.978 |
103 | 103 | 0.666 |
104 | 104 | 0.588 |
105 | 105 | 0.282 |
106 | 106 | 0.049 |
107 | 107 | 0.339 |
108 | 108 | 0.379 |
109 | 109 | 0.326 |
11 | 11 | 0.26 |
110 | 110 | 0.505 |
111 | 111 | 0.236 |
112 | 112 | 0.423 |
113 | 113 | 0.00476 |
114 | 114 | 0.0618 |
115 | 115 | 0.752 |
116 | 116 | 0.122 |
117 | 117 | 0.521 |
118 | 118 | 0.317 |
119 | 119 | 0.284 |
12 | 12 | 0.729 |
120 | 120 | 0.345 |
121 | 121 | 0.365 |
122 | 122 | 0.493 |
123 | 123 | 7.62243e-4 |
124 | 124 | 0.0167 |
125 | 125 | 0.793 |
126 | 126 | 0.883 |
127 | 127 | 0.887 |
128 | 128 | 0.0345 |
129 | 129 | 0.625 |
13 | 13 | 0.789 |
130 | 130 | 0.949 |
131 | 131 | 0.00781 |
132 | 132 | 0.906 |
133 | 133 | 0.977 |
134 | 134 | 0.0274 |
135 | 135 | 0.908 |
136 | 136 | 0.00903 |
137 | 137 | 0.291 |
138 | 138 | 0.132 |
139 | 139 | 0.00545 |
14 | 14 | 0.81 |
140 | 140 | 0.903 |
141 | 141 | 0.433 |
142 | 142 | 0.103 |
143 | 143 | 0.303 |
144 | 144 | 0.864 |
145 | 145 | 0.735 |
146 | 146 | 0.0175 |
147 | 147 | 0.157 |
148 | 148 | 0.305 |
149 | 149 | 0.98 |
15 | 15 | 0.802 |
150 | 150 | 0.789 |
151 | 151 | 0.968 |
152 | 152 | 0.0649 |
153 | 153 | 0.224 |
154 | 154 | 0.223 |
155 | 155 | 0.213 |
156 | 156 | 0.429 |
157 | 157 | 0.249 |
158 | 158 | 0.509 |
159 | 159 | 0.92 |
16 | 16 | 0.382 |
160 | 160 | 0.945 |
161 | 161 | 0.675 |
162 | 162 | 0.453 |
163 | 163 | 0.365 |
164 | 164 | 0.943 |
165 | 165 | 0.569 |
166 | 166 | 0.827 |
167 | 167 | 0.547 |
168 | 168 | 0.43 |
169 | 169 | 0.331 |
17 | 17 | 0.858 |
18 | 18 | 0.188 |
19 | 19 | 0.278 |
2 | 2 | 0.691 |
20 | 20 | 0.236 |
21 | 21 | 0.105 |
22 | 22 | 0.323 |
23 | 23 | 0.32 |
24 | 24 | 0.523 |
25 | 25 | 0.815 |
26 | 26 | 0.241 |
27 | 27 | 0.29 |
28 | 28 | 0.833 |
29 | 29 | 0.117 |
3 | 3 | 0.94 |
30 | 30 | 0.177 |
31 | 31 | 0.837 |
32 | 32 | 0.648 |
33 | 33 | 0.782 |
34 | 34 | 0.611 |
35 | 35 | 0.0126 |
36 | 36 | 0.0359 |
37 | 37 | 0.0384 |
38 | 38 | 0.424 |
39 | 39 | 0.372 |
4 | 4 | 0.852 |
40 | 40 | 0.974 |
41 | 41 | 0.292 |
42 | 42 | 0.789 |
43 | 43 | 0.234 |
44 | 44 | 0.529 |
45 | 45 | 0.176 |
46 | 46 | 0.0584 |
47 | 47 | 0.115 |
48 | 48 | 0.718 |
49 | 49 | 0.0623 |
5 | 5 | 0.89 |
50 | 50 | 0.725 |
51 | 51 | 0.771 |
52 | 52 | 0.752 |
53 | 53 | 0.094 |
54 | 54 | 0.941 |
55 | 55 | 0.329 |
56 | 56 | 0.971 |
57 | 57 | 0.617 |
58 | 58 | 0.278 |
59 | 59 | 0.777 |
6 | 6 | 0.808 |
60 | 60 | 0.068 |
61 | 61 | 0.986 |
62 | 62 | 0.224 |
63 | 63 | 0.147 |
64 | 64 | 0.887 |
65 | 65 | 0.257 |
66 | 66 | 0.761 |
67 | 67 | 0.367 |
68 | 68 | 0.21 |
69 | 69 | 0.368 |
7 | 7 | 0.811 |
70 | 70 | 0.136 |
71 | 71 | 0.252 |
72 | 72 | 0.643 |
73 | 73 | 0.264 |
74 | 74 | 0.0853 |
75 | 75 | 0.624 |
76 | 76 | 0.93 |
77 | 77 | 0.812 |
78 | 78 | 0.198 |
79 | 79 | 0.596 |
8 | 8 | 0.207 |
80 | 80 | 0.414 |
81 | 81 | 0.0162 |
82 | 82 | 0.052 |
83 | 83 | 0.802 |
84 | 84 | 0.49 |
85 | 85 | 0.118 |
86 | 86 | 0.0424 |
87 | 87 | 0.626 |
88 | 88 | 0.976 |
89 | 89 | 0.865 |
9 | 9 | 0.809 |
90 | 90 | 0.834 |
91 | 91 | 0.998 |
92 | 92 | 0.251 |
93 | 93 | 0.945 |
94 | 94 | 0.872 |
95 | 95 | 0.491 |
96 | 96 | 0.351 |
97 | 97 | 0.135 |
98 | 98 | 0.202 |
99 | 99 | 0.93 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs12503
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
EFO:0002091 biological replicate
FF:0000010 human amniotic membrane cell- Amnion sample
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000723 (somatic stem cell)
0000048 (multi fate stem cell)
0000548 (animal cell)
0002320 (connective tissue cell)
0002371 (somatic cell)
0000219 (motile cell)
0000134 (mesenchymal cell)
0000349 (extraembryonic cell)
0000255 (eukaryotic cell)
0000034 (stem cell)
0002537 (amnion mesenchymal stem cell)
UBERON: Anatomy
0000468 (multi-cellular organism)
0000305 (amnion)
0002384 (connective tissue)
0000479 (tissue)
0004121 (ectoderm-derived structure)
0000064 (organ part)
0000062 (organ)
0004120 (mesoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0004923 (organ component layer)
0005631 (extraembryonic membrane)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0000478 (extraembryonic structure)
0010317 (germ layer / neural crest derived structure)
0000158 (membranous layer)
FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000092 (human amniotic membrane cell sample)
0000101 (sample by species)
0000001 (sample)
0000010 (human amniotic membrane cell- Amnion sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000134 (mesenchymal cell)