FF:12245-129H4: Difference between revisions
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{{f5samples | {{f5samples | ||
|DRA_sample_Accession=CAGE@ | |DRA_sample_Accession=CAGE@SAMD00005123 | ||
|accession_numbers=CAGE;DRX008076;DRR008948;DRZ000373;DRZ001758 | |accession_numbers=CAGE;DRX008076;DRR008948;DRZ000373;DRZ001758;DRZ011723;DRZ013108 | ||
|ancestors_in_anatomy_facet= | |ancestors_in_anatomy_facet= | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000988,CL:0000548,CL:0000763,CL:0002371,CL:0000766,CL:0000081,CL:0000219,CL:0000738,CL:0000255,CL:0000094,CL:0000771 | |ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000988,CL:0000548,CL:0000763,CL:0002371,CL:0000766,CL:0000081,CL:0000219,CL:0000738,CL:0000255,CL:0000094,CL:0000771 | ||
Line 9: | Line 9: | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|data_phase= | |data_phase=2 | ||
|datafreeze_phase= | |datafreeze_phase=2 | ||
|def= | |def= | ||
|expression_enrichment_score=chr2:68592406..68592424,+!p1@PLEK!3.57!3721.48!PLEK;;chr11:47400078..47400106,-!p1@SPI1!3.05!1125.40!SPI1;;chr2:70142232..70142251,+!p1@MXD1!2.52!1732.91!MXD1;;chr10:35484053..35484076,+!p1@CREM!2.43!648.36!CREM;;chr19:45252008..45252024,+!p2@BCL3!2.32!652.31!BCL3;;chr11:47400062..47400077,-!p2@SPI1!2.32!208.21!SPI1;;chr8:22550982..22550999,-!p1@EGR3!2.28!513.94!EGR3;;chr14:35873947..35873965,-!p1@NFKBIA!2.27!10769.10!NFKBIA;;chr5:142782823..142782854,-!p3@NR3C1!2.21!225.34!NR3C1;;chr11:47399947..47399961,-!p3@SPI1!2.21!160.77!SPI1;;chr14:35872962..35873025,-!p3@NFKBIA!2.19!372.94!NFKBIA;;chr9:102584262..102584276,+!p1@NR4A3!2.18!326.82!NR4A3;;chr10:104154415..104154434,+!p5@NFKB2!2.17!146.28!NFKB2;;chr2:157189180..157189290,-!p1@NR4A2!2.13!664.17!NR4A2;;chr19:36391434..36391450,-!p1@NFKBID!2.13!254.34!NFKBID;;chr11:47400032..47400043,-!p5@SPI1!2.11!129.14!SPI1;;chr10:104155659..104155676,+!p4@NFKB2!2.10!152.87!NFKB2;;chr6:44233252..44233296,-!p1@NFKBIE!2.05!1029.21!NFKBIE;;chr6:12011943..12012015,+!p2@HIVEP1!2.04!334.72!HIVEP1;;chr19:45251395..45251432,+!p8@BCL3!2.04!108.06!BCL3;;chr10:104155480..104155534,+!p2@NFKB2!2.03!656.27!NFKB2;;chr10:104154246..104154347,+!p3@NFKB2!2.02!595.65!NFKB2;;chr16:31885093..31885165,+!p1@ZNF267!2.01!1453.54!ZNF267;;chr6:144385698..144385742,-!p2@PLAGL1!2.01!121.24!PLAGL1;;chr2:231090471..231090504,+!p2@SP140!2.01!101.47!SP140;;chr3:39195075..39195088,-!p1@CSRNP1!2.00!587.74!CSRNP1;;chr11:47399996..47400014,-!p4@SPI1!1.99!96.20!SPI1;;chr3:39195037..39195069,-!p2@CSRNP1!1.96!525.80!CSRNP1;;chr19:45250948..45250998,+!p3@BCL3!1.96!217.44!BCL3;;chr10:35484090..35484104,+!p6@CREM!1.96!90.93!CREM;;chr3:101568349..101568365,+!p1@NFKBIZ!1.94!4132.63!NFKBIZ;;chr2:68592394..68592405,+!p2@PLEK!1.94!85.66!PLEK;;chr14:75745523..75745537,+!p1@FOS!1.92!9247.03!FOS;;chr7:50344289..50344323,+!p1@IKZF1!1.92!81.70!IKZF1;;chr17:38498594..38498661,+!p2@RARA!1.91!255.65!RARA;;chr12:72056800..72056834,+!p1@THAP2!1.90!104.11!THAP2;;chr9:102584241..102584261,+!p4@NR4A3!1.89!117.28!NR4A3;;chr7:28725715..28725727,+!p3@CREB5!1.88!88.29!CREB5;;chr1:151030536..151030549,+!p8@MLLT11!1.88!75.11!MLLT11;;chr11:47400045..47400060,-!p6@SPI1!1.87!72.48!SPI1;;chr1:156470515..156470542,-!p2@MEF2D!1.86!357.12!MEF2D;;chr4:83822199..83822239,+!p2@THAP9!1.86!84.34!THAP9;;chr5:131826457..131826514,-!p1@IRF1!1.85!2552.59!IRF1;;chr19:45971246..45971265,+!p1@FOSB!1.85!1211.06!FOSB;;chr17:38497662..38497713,+!p4@RARA!1.85!80.39!RARA;;chr2:70142189..70142223,+!p2@MXD1!1.82!440.15!MXD1;;chr14:35872926..35872951,-!p4@NFKBIA!1.82!89.61!NFKBIA;;chr14:35872453..35872485,-!p2@NFKBIA!1.81!151.55!NFKBIA;;chr19:12902289..12902307,+!p1@JUNB!1.79!13080.52!JUNB;;chr4:83822246..83822277,+!p5@THAP9!1.79!60.62!THAP9;;chr9:102584128..102584144,+!p3@NR4A3!1.78!109.38!NR4A3;;chr2:231084639..231084654,-!p2@SP110!1.78!96.20!SP110;;chr2:97202480..97202499,+!p1@ARID5A!1.77!548.21!ARID5A;;chr4:106068026..106068084,+!p1@TET2!1.77!492.86!TET2;;chr2:61108808..61108821,+!p3@REL!1.77!72.48!REL;;chr1:37940170..37940190,+!p1@ZC3H12A!1.76!657.58!ZC3H12A;;chr8:123793988..123794016,+!p1@ZHX2!1.76!97.52!ZHX2;;chr10:35416142..35416169,+!p3@CREM!1.75!142.32!CREM;;chr20:56195474..56195506,-!p1@ZBP1!1.75!55.35!ZBP1;;chr2:61108695..61108753,+!p1@REL!1.74!350.54!REL;;chr2:231090433..231090469,+!p1@SP140!1.74!54.03!SP140;;chr17:38498402..38498445,+!p3@RARA!1.73!183.17!RARA;;chr2:208031943..208031978,-!p5@KLF7!1.71!65.89!KLF7;;chr2:208394817..208394834,+!p3@CREB1!1.69!187.13!CREB1;;chr9:88969339..88969422,-!p2@ZCCHC6!1.68!349.22!ZCCHC6;;chr7:149470641..149470694,-!p1@ZNF467!1.68!202.94!ZNF467;;chr19:47616992..47617011,-!p4@ZC3H4!1.67!94.88!ZC3H4;;chr17:40429090..40429125,-!p3@STAT5B!1.67!46.12!STAT5B;;chr10:51572408..51572454,+!p3@NCOA4!1.66!246.43!NCOA4;;chr2:208031542..208031595,-!p2@KLF7!1.65!295.19!KLF7;;chr4:83822343..83822355,+!p9@THAP9!1.65!43.49!THAP9;;chr4:140098339..140098392,-!p1@ELF2!1.64!333.40!ELF2;;chr3:101546827..101546847,+!p2@NFKBIZ!1.64!59.30!NFKBIZ;;chr19:16435625..16435682,+!p1@KLF2!1.63!1251.91!KLF2;;chr7:28725740..28725778,+!p1@CREB5!1.63!351.85!CREB5;;chr3:187463179..187463201,-!p2@BCL6!1.63!163.41!BCL6;;chr7:64126535..64126559,+!p2@ZNF107!1.63!86.98!ZNF107;;chr6:106534192..106534224,+!p1@PRDM1!1.62!110.70!PRDM1;;chr6:106534230..106534254,+!p2@PRDM1!1.62!100.15!PRDM1;;chr1:156470494..156470505,-!p3@MEF2D!1.62!57.98!MEF2D;;chr12:72056773..72056796,+!p3@THAP2!1.62!52.71!THAP2;;chr7:99680193..99680204,-!p2@ZNF3!1.62!40.85!ZNF3;;chr2:61108771..61108789,+!p4@REL!1.60!57.98!REL;;chr3:39195139..39195150,-!p3@CSRNP1!1.60!48.76!CSRNP1;;chr19:45251943..45252006,+!p1@BCL3!1.59!939.59!BCL3;;chr6:12012170..12012245,+!p1@HIVEP1!1.59!183.17!HIVEP1;;chr4:103423079..103423112,+!p4@NFKB1!1.58!36.90!NFKB1;;chr9:88969303..88969335,-!p1@ZCCHC6!1.57!321.54!ZCCHC6;;chr7:106809470..106809481,+!p2@HBP1!1.57!50.08!HBP1;;chr4:38665769..38665801,+!p2@KLF3!1.55!300.46!KLF3;;chr12:57914286..57914304,-!p1@DDIT3!1.54!1164.94!DDIT3;;chrX:129244454..129244488,-!p1@ELF4!1.53!229.30!ELF4;;chr2:145275162..145275202,-!p2@ZEB2!1.53!185.81!ZEB2;;chr9:117150254..117150271,-!p1@AKNA!1.53!86.98!AKNA;;chr20:48807171..48807234,+!p4@CEBPB!1.53!71.16!CEBPB;;chr14:75746340..75746368,+!p3@FOS!1.53!32.95!FOS;;chr19:21688458..21688467,+!p3@ZNF429!1.53!32.95!ZNF429;;chr9:137217986..137218049,+!p3@RXRA!1.52!89.61!RXRA;;chr20:48807351..48807384,+!p1@CEBPB!1.51!3027.00!CEBPB;;chr1:25256756..25256774,-!p1@RUNX3!1.51!57.98!RUNX3;;chr1:8484007..8484061,-!p13@RERE!1.51!39.53!RERE;;chr4:103422499..103422632,+!p1@NFKB1!1.49!598.28!NFKB1;;chr12:48298785..48298828,-!p1@VDR!1.49!151.55!VDR;;chr2:70314240..70314256,+!p4@PCBP1!1.48!59.30!PCBP1;;chr5:176735063..176735088,-!p2@MXD3!1.48!28.99!MXD3;;chr9:32550965..32551031,-!p4@TOPORS!1.47!43.49!TOPORS;;chr2:28615716..28615733,+!p1@FOSL2!1.46!1246.64!FOSL2;;chr13:41593425..41593480,-!p1@ELF1!1.46!170.00!ELF1;;chrX:106960180..106960197,-!p2@TSC22D3!1.46!102.79!TSC22D3;;chr6:15246200..15246214,+!p2@JARID2!1.46!75.11!JARID2;;chr7:44924939..44924993,-!p2@PURB!1.46!52.71!PURB;;chrX:129244430..129244442,-!p5@ELF4!1.46!27.67!ELF4;;chr19:36389839..36389857,-!p4@NFKBID!1.46!27.67!NFKBID;;chr6:143266297..143266356,-!p1@HIVEP2!1.45!126.51!HIVEP2;;chr1:247095162..247095173,-!p3@AHCTF1!1.45!40.85!AHCTF1;;chr9:127533519..127533573,-!p2@NR6A1!1.44!31.63!NR6A1;;chr6:44355499..44355514,+!p3@CDC5L!1.44!28.99!CDC5L;;chr9:102584278..102584285,+!p5@NR4A3!1.44!26.36!NR4A3;;chr19:45257891..45257908,+!p17@BCL3!1.44!26.36!BCL3;;chr11:47399920..47399931,-!p7@SPI1!1.44!26.36!SPI1;;chr16:3313791..3313834,+!p2@ZNF263!1.43!56.67!ZNF263;;chr7:50343634..50343717,+!p2@IKZF1!1.42!25.04!IKZF1;;chr22:38597987..38598021,+!p2@MAFF!1.41!146.28!MAFF;;chr12:72056749..72056767,+!p6@THAP2!1.41!27.67!THAP2;;chr2:231084659..231084721,-!p1@SP110!1.40!544.25!SP110;;chr3:170075436..170075520,+!p1@SKIL!1.39!491.54!SKIL;;chr21:30671690..30671762,+!p2@BACH1!1.39!79.07!BACH1;;chr3:150126904..150126958,+!p7@TSC22D2!1.39!40.85!TSC22D2;;chr3:18466660..18466676,-!p5@SATB1!1.39!27.67!SATB1;;chr2:157198916..157198978,-!p2@NR4A2!1.38!79.07!NR4A2;;chr6:15249128..15249177,+!p4@JARID2!1.38!40.85!JARID2;;chr8:71316021..71316068,-!p1@NCOA2!1.37!201.62!NCOA2;;chr9:94186085..94186096,-!p3@NFIL3!1.37!36.90!NFIL3;;chr5:172483414..172483425,+!p3@C5orf41!1.37!22.40!CREBRF;;chr1:154975110..154975149,+!p2@ZBTB7B!1.36!46.12!ZBTB7B;;chr11:13299319..13299424,+!p1@ARNTL!1.35!206.90!ARNTL;;chr9:102584159..102584174,+!p2@NR4A3!1.35!38.22!NR4A3;;chr6:15246261..15246312,+!p1@JARID2!1.34!483.63!JARID2;;chr21:30671235..30671253,+!p1@BACH1!1.34!255.65!BACH1;;chr14:62162258..62162269,+!p2@HIF1A!1.34!196.35!HIF1A;;chr5:172483347..172483407,+!p1@C5orf41!1.34!152.87!CREBRF;;chr12:11802753..11802834,+!p2@ETV6!1.34!100.15!ETV6;;chr14:64971288..64971316,-!p2@ZBTB25!1.34!63.25!ZBTB25;;chr2:70167296..70167306,+!p3@MXD1!1.34!31.63!MXD1;;chrY:2803415..2803468,+!p1@ZFY!1.34!21.08!ZFY;;chr17:38497715..38497734,+!p8@RARA!1.34!21.08!RARA;;chr4:83821967..83821998,+!p3@THAP9!1.33!25.04!THAP9;;chr14:62162285..62162296,+!p3@HIF1A!1.32!100.15!HIF1A;;chr21:47063625..47063658,+!p1@PCBP3!1.32!84.34!PCBP3;;chr14:69262789..69262822,-!p2@ZFP36L1!1.32!51.39!ZFP36L1;;chr14:35872494..35872511,-!p5@NFKBIA!1.32!26.36!NFKBIA;;chr7:50344251..50344288,+!p3@IKZF1!1.32!19.77!IKZF1;;chr3:113415441..113415500,-!p1@KIAA2018!1.31!102.79!KIAA2018;;chr12:53835425..53835437,+!p4@PRR13,p5@PCBP2!1.31!31.63!PCBP2;;chr20:48807430..48807439,+!p8@CEBPB!1.31!28.99!CEBPB;;chr3:5020939..5020952,+!p2@BHLHE40!1.30!57.98!BHLHE40;;chr12:48298765..48298783,-!p2@VDR!1.30!39.53!VDR;;chr14:69261310..69261326,-!p5@ZFP36L1!1.30!25.04!ZFP36L1;;chrX:106960285..106960299,-!p1@TSC22D3!1.29!486.27!TSC22D3;;chr1:247095194..247095235,-!p1@AHCTF1!1.29!189.76!AHCTF1;;chr14:58765217..58765301,+!p1@ARID4A!1.29!163.41!ARID4A;;chr19:12075844..12075880,+!p3@ZNF763!1.29!31.63!ZNF763;;chr12:54694758..54694805,-!p1@NFE2!1.29!22.40!NFE2;;chr12:57917037..57917052,+!p9@MBD6!1.29!18.45!MBD6;;chr14:75988831..75988847,+!p2@BATF!1.29!18.45!BATF;;chr2:61108878..61108891,+!p5@REL!1.29!18.45!REL;;chr8:123794038..123794056,+!p5@ZHX2!1.29!18.45!ZHX2;;chr17:40440481..40440550,+!p1@STAT5A!1.28!127.83!STAT5A;;chr1:153895251..153895342,-!p2@GATAD2B!1.28!65.89!GATAD2B;;chr4:185395191..185395226,-!p4@IRF2!1.28!25.04!IRF2;;chr10:31288398..31288455,-!p2@ZNF438!1.28!21.08!ZNF438;;chr14:62162224..62162254,+!p1@HIF1A!1.27!2478.79!HIF1A;;chr2:174828545..174828644,-!p1@SP3!1.27!262.24!SP3;;chr20:48807875..48807982,+!p2@CEBPB!1.26!368.99!CEBPB;;chr2:145277640..145277771,-!p1@ZEB2!1.26!225.34!ZEB2;;chr21:40177892..40177903,+!p2@ETS2!1.26!68.53!ETS2;;chr21:30671189..30671207,+!p4@BACH1!1.26!59.30!BACH1;;chr20:48807456..48807475,+!p3@CEBPB!1.26!32.95!CEBPB;;chr12:54694653..54694672,-!p2@NFE2!1.26!17.13!NFE2;;chr6:15246741..15246765,+!p9@JARID2!1.26!17.13!JARID2;;chr16:88636875..88636886,+!p3@ZC3H18!1.25!23.72!ZC3H18;;chr4:185395633..185395651,-!p2@IRF2!1.24!26.36!IRF2;;chr2:43453734..43453751,-!p1@ZFP36L2!1.23!1649.89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| |expression_enrichment_score=chr2:68592406..68592424,+!p1@PLEK!3.57!3721.48!PLEK;;chr11:47400078..47400106,-!p1@SPI1!3.05!1125.40!SPI1;;chr2:70142232..70142251,+!p1@MXD1!2.52!1732.91!MXD1;;chr10:35484053..35484076,+!p1@CREM!2.43!648.36!CREM;;chr19:45252008..45252024,+!p2@BCL3!2.32!652.31!BCL3;;chr11:47400062..47400077,-!p2@SPI1!2.32!208.21!SPI1;;chr8:22550982..22550999,-!p1@EGR3!2.28!513.94!EGR3;;chr14:35873947..35873965,-!p1@NFKBIA!2.27!10769.10!NFKBIA;;chr5:142782823..142782854,-!p3@NR3C1!2.21!225.34!NR3C1;;chr11:47399947..47399961,-!p3@SPI1!2.21!160.77!SPI1;;chr14:35872962..35873025,-!p3@NFKBIA!2.19!372.94!NFKBIA;;chr9:102584262..102584276,+!p1@NR4A3!2.18!326.82!NR4A3;;chr10:104154415..104154434,+!p5@NFKB2!2.17!146.28!NFKB2;;chr2:157189180..157189290,-!p1@NR4A2!2.13!664.17!NR4A2;;chr19:36391434..36391450,-!p1@NFKBID!2.13!254.34!NFKBID;;chr11:47400032..47400043,-!p5@SPI1!2.11!129.14!SPI1;;chr10:104155659..104155676,+!p4@NFKB2!2.10!152.87!NFKB2;;chr6:44233252..44233296,-!p1@NFKBIE!2.05!1029.21!NFKBIE;;chr6:12011943..12012015,+!p2@HIVEP1!2.04!334.72!HIVEP1;;chr19:45251395..45251432,+!p8@BCL3!2.04!108.06!BCL3;;chr10:104155480..104155534,+!p2@NFKB2!2.03!656.27!NFKB2;;chr10:104154246..104154347,+!p3@NFKB2!2.02!595.65!NFKB2;;chr16:31885093..31885165,+!p1@ZNF267!2.01!1453.54!ZNF267;;chr6:144385698..144385742,-!p2@PLAGL1!2.01!121.24!PLAGL1;;chr2:231090471..231090504,+!p2@SP140!2.01!101.47!SP140;;chr3:39195075..39195088,-!p1@CSRNP1!2.00!587.74!CSRNP1;;chr11:47399996..47400014,-!p4@SPI1!1.99!96.20!SPI1;;chr3:39195037..39195069,-!p2@CSRNP1!1.96!525.80!CSRNP1;;chr19:45250948..45250998,+!p3@BCL3!1.96!217.44!BCL3;;chr10:35484090..35484104,+!p6@CREM!1.96!90.93!CREM;;chr3:101568349..101568365,+!p1@NFKBIZ!1.94!4132.63!NFKBIZ;;chr2:68592394..68592405,+!p2@PLEK!1.94!85.66!PLEK;;chr14:75745523..75745537,+!p1@FOS!1.92!9247.03!FOS;;chr7:50344289..50344323,+!p1@IKZF1!1.92!81.70!IKZF1;;chr17:38498594..38498661,+!p2@RARA!1.91!255.65!RARA;;chr12:72056800..72056834,+!p1@THAP2!1.90!104.11!THAP2;;chr9:102584241..102584261,+!p4@NR4A3!1.89!117.28!NR4A3;;chr7:28725715..28725727,+!p3@CREB5!1.88!88.29!CREB5;;chr1:151030536..151030549,+!p8@MLLT11!1.88!75.11!MLLT11;;chr11:47400045..47400060,-!p6@SPI1!1.87!72.48!SPI1;;chr1:156470515..156470542,-!p2@MEF2D!1.86!357.12!MEF2D;;chr4:83822199..83822239,+!p2@THAP9!1.86!84.34!THAP9;;chr5:131826457..131826514,-!p1@IRF1!1.85!2552.59!IRF1;;chr19:45971246..45971265,+!p1@FOSB!1.85!1211.06!FOSB;;chr17:38497662..38497713,+!p4@RARA!1.85!80.39!RARA;;chr2:70142189..70142223,+!p2@MXD1!1.82!440.15!MXD1;;chr14:35872926..35872951,-!p4@NFKBIA!1.82!89.61!NFKBIA;;chr14:35872453..35872485,-!p2@NFKBIA!1.81!151.55!NFKBIA;;chr19:12902289..12902307,+!p1@JUNB!1.79!13080.52!JUNB;;chr4:83822246..83822277,+!p5@THAP9!1.79!60.62!THAP9;;chr9:102584128..102584144,+!p3@NR4A3!1.78!109.38!NR4A3;;chr2:231084639..231084654,-!p2@SP110!1.78!96.20!SP110;;chr2:97202480..97202499,+!p1@ARID5A!1.77!548.21!ARID5A;;chr4:106068026..106068084,+!p1@TET2!1.77!492.86!TET2;;chr2:61108808..61108821,+!p3@REL!1.77!72.48!REL;;chr1:37940170..37940190,+!p1@ZC3H12A!1.76!657.58!ZC3H12A;;chr8:123793988..123794016,+!p1@ZHX2!1.76!97.52!ZHX2;;chr10:35416142..35416169,+!p3@CREM!1.75!142.32!CREM;;chr20:56195474..56195506,-!p1@ZBP1!1.75!55.35!ZBP1;;chr2:61108695..61108753,+!p1@REL!1.74!350.54!REL;;chr2:231090433..231090469,+!p1@SP140!1.74!54.03!SP140;;chr17:38498402..38498445,+!p3@RARA!1.73!183.17!RARA;;chr2:208031943..208031978,-!p5@KLF7!1.71!65.89!KLF7;;chr2:208394817..208394834,+!p3@CREB1!1.69!187.13!CREB1;;chr9:88969339..88969422,-!p2@ZCCHC6!1.68!349.22!ZCCHC6;;chr7:149470641..149470694,-!p1@ZNF467!1.68!202.94!ZNF467;;chr19:47616992..47617011,-!p4@ZC3H4!1.67!94.88!ZC3H4;;chr17:40429090..40429125,-!p3@STAT5B!1.67!46.12!STAT5B;;chr10:51572408..51572454,+!p3@NCOA4!1.66!246.43!NCOA4;;chr2:208031542..208031595,-!p2@KLF7!1.65!295.19!KLF7;;chr4:83822343..83822355,+!p9@THAP9!1.65!43.49!THAP9;;chr4:140098339..140098392,-!p1@ELF2!1.64!333.40!ELF2;;chr3:101546827..101546847,+!p2@NFKBIZ!1.64!59.30!NFKBIZ;;chr19:16435625..16435682,+!p1@KLF2!1.63!1251.91!KLF2;;chr7:28725740..28725778,+!p1@CREB5!1.63!351.85!CREB5;;chr3:187463179..187463201,-!p2@BCL6!1.63!163.41!BCL6;;chr7:64126535..64126559,+!p2@ZNF107!1.63!86.98!ZNF107;;chr6:106534192..106534224,+!p1@PRDM1!1.62!110.70!PRDM1;;chr6:106534230..106534254,+!p2@PRDM1!1.62!100.15!PRDM1;;chr1:156470494..156470505,-!p3@MEF2D!1.62!57.98!MEF2D;;chr12:72056773..72056796,+!p3@THAP2!1.62!52.71!THAP2;;chr7:99680193..99680204,-!p2@ZNF3!1.62!40.85!ZNF3;;chr2:61108771..61108789,+!p4@REL!1.60!57.98!REL;;chr3:39195139..39195150,-!p3@CSRNP1!1.60!48.76!CSRNP1;;chr19:45251943..45252006,+!p1@BCL3!1.59!939.59!BCL3;;chr6:12012170..12012245,+!p1@HIVEP1!1.59!183.17!HIVEP1;;chr4:103423079..103423112,+!p4@NFKB1!1.58!36.90!NFKB1;;chr9:88969303..88969335,-!p1@ZCCHC6!1.57!321.54!ZCCHC6;;chr7:106809470..106809481,+!p2@HBP1!1.57!50.08!HBP1;;chr4:38665769..38665801,+!p2@KLF3!1.55!300.46!KLF3;;chr12:57914286..57914304,-!p1@DDIT3!1.54!1164.94!DDIT3;;chrX:129244454..129244488,-!p1@ELF4!1.53!229.30!ELF4;;chr2:145275162..145275202,-!p2@ZEB2!1.53!185.81!ZEB2;;chr9:117150254..117150271,-!p1@AKNA!1.53!86.98!AKNA;;chr20:48807171..48807234,+!p4@CEBPB!1.53!71.16!CEBPB;;chr14:75746340..75746368,+!p3@FOS!1.53!32.95!FOS;;chr19:21688458..21688467,+!p3@ZNF429!1.53!32.95!ZNF429;;chr9:137217986..137218049,+!p3@RXRA!1.52!89.61!RXRA;;chr20:48807351..48807384,+!p1@CEBPB!1.51!3027.00!CEBPB;;chr1:25256756..25256774,-!p1@RUNX3!1.51!57.98!RUNX3;;chr1:8484007..8484061,-!p13@RERE!1.51!39.53!RERE;;chr4:103422499..103422632,+!p1@NFKB1!1.49!598.28!NFKB1;;chr12:48298785..48298828,-!p1@VDR!1.49!151.55!VDR;;chr2:70314240..70314256,+!p4@PCBP1!1.48!59.30!PCBP1;;chr5:176735063..176735088,-!p2@MXD3!1.48!28.99!MXD3;;chr9:32550965..32551031,-!p4@TOPORS!1.47!43.49!TOPORS;;chr2:28615716..28615733,+!p1@FOSL2!1.46!1246.64!FOSL2;;chr13:41593425..41593480,-!p1@ELF1!1.46!170.00!ELF1;;chrX:106960180..106960197,-!p2@TSC22D3!1.46!102.79!TSC22D3;;chr6:15246200..15246214,+!p2@JARID2!1.46!75.11!JARID2;;chr7:44924939..44924993,-!p2@PURB!1.46!52.71!PURB;;chrX:129244430..129244442,-!p5@ELF4!1.46!27.67!ELF4;;chr19:36389839..36389857,-!p4@NFKBID!1.46!27.67!NFKBID;;chr6:143266297..143266356,-!p1@HIVEP2!1.45!126.51!HIVEP2;;chr1:247095162..247095173,-!p3@AHCTF1!1.45!40.85!AHCTF1;;chr9:127533519..127533573,-!p2@NR6A1!1.44!31.63!NR6A1;;chr6:44355499..44355514,+!p3@CDC5L!1.44!28.99!CDC5L;;chr9:102584278..102584285,+!p5@NR4A3!1.44!26.36!NR4A3;;chr19:45257891..45257908,+!p17@BCL3!1.44!26.36!BCL3;;chr11:47399920..47399931,-!p7@SPI1!1.44!26.36!SPI1;;chr16:3313791..3313834,+!p2@ZNF263!1.43!56.67!ZNF263;;chr7:50343634..50343717,+!p2@IKZF1!1.42!25.04!IKZF1;;chr22:38597987..38598021,+!p2@MAFF!1.41!146.28!MAFF;;chr12:72056749..72056767,+!p6@THAP2!1.41!27.67!THAP2;;chr2:231084659..231084721,-!p1@SP110!1.40!544.25!SP110;;chr3:170075436..170075520,+!p1@SKIL!1.39!491.54!SKIL;;chr21:30671690..30671762,+!p2@BACH1!1.39!79.07!BACH1;;chr3:150126904..150126958,+!p7@TSC22D2!1.39!40.85!TSC22D2;;chr3:18466660..18466676,-!p5@SATB1!1.39!27.67!SATB1;;chr2:157198916..157198978,-!p2@NR4A2!1.38!79.07!NR4A2;;chr6:15249128..15249177,+!p4@JARID2!1.38!40.85!JARID2;;chr8:71316021..71316068,-!p1@NCOA2!1.37!201.62!NCOA2;;chr9:94186085..94186096,-!p3@NFIL3!1.37!36.90!NFIL3;;chr5:172483414..172483425,+!p3@C5orf41!1.37!22.40!CREBRF;;chr1:154975110..154975149,+!p2@ZBTB7B!1.36!46.12!ZBTB7B;;chr11:13299319..13299424,+!p1@ARNTL!1.35!206.90!ARNTL;;chr9:102584159..102584174,+!p2@NR4A3!1.35!38.22!NR4A3;;chr6:15246261..15246312,+!p1@JARID2!1.34!483.63!JARID2;;chr21:30671235..30671253,+!p1@BACH1!1.34!255.65!BACH1;;chr14:62162258..62162269,+!p2@HIF1A!1.34!196.35!HIF1A;;chr5:172483347..172483407,+!p1@C5orf41!1.34!152.87!CREBRF;;chr12:11802753..11802834,+!p2@ETV6!1.34!100.15!ETV6;;chr14:64971288..64971316,-!p2@ZBTB25!1.34!63.25!ZBTB25;;chr2:70167296..70167306,+!p3@MXD1!1.34!31.63!MXD1;;chrY:2803415..2803468,+!p1@ZFY!1.34!21.08!ZFY;;chr17:38497715..38497734,+!p8@RARA!1.34!21.08!RARA;;chr4:83821967..83821998,+!p3@THAP9!1.33!25.04!THAP9;;chr14:62162285..62162296,+!p3@HIF1A!1.32!100.15!HIF1A;;chr21:47063625..47063658,+!p1@PCBP3!1.32!84.34!PCBP3;;chr14:69262789..69262822,-!p2@ZFP36L1!1.32!51.39!ZFP36L1;;chr14:35872494..35872511,-!p5@NFKBIA!1.32!26.36!NFKBIA;;chr7:50344251..50344288,+!p3@IKZF1!1.32!19.77!IKZF1;;chr3:113415441..113415500,-!p1@KIAA2018!1.31!102.79!KIAA2018;;chr12:53835425..53835437,+!p4@PRR13,p5@PCBP2!1.31!31.63!PCBP2;;chr20:48807430..48807439,+!p8@CEBPB!1.31!28.99!CEBPB;;chr3:5020939..5020952,+!p2@BHLHE40!1.30!57.98!BHLHE40;;chr12:48298765..48298783,-!p2@VDR!1.30!39.53!VDR;;chr14:69261310..69261326,-!p5@ZFP36L1!1.30!25.04!ZFP36L1;;chrX:106960285..106960299,-!p1@TSC22D3!1.29!486.27!TSC22D3;;chr1:247095194..247095235,-!p1@AHCTF1!1.29!189.76!AHCTF1;;chr14:58765217..58765301,+!p1@ARID4A!1.29!163.41!ARID4A;;chr19:12075844..12075880,+!p3@ZNF763!1.29!31.63!ZNF763;;chr12:54694758..54694805,-!p1@NFE2!1.29!22.40!NFE2;;chr12:57917037..57917052,+!p9@MBD6!1.29!18.45!MBD6;;chr14:75988831..75988847,+!p2@BATF!1.29!18.45!BATF;;chr2:61108878..61108891,+!p5@REL!1.29!18.45!REL;;chr8:123794038..123794056,+!p5@ZHX2!1.29!18.45!ZHX2;;chr17:40440481..40440550,+!p1@STAT5A!1.28!127.83!STAT5A;;chr1:153895251..153895342,-!p2@GATAD2B!1.28!65.89!GATAD2B;;chr4:185395191..185395226,-!p4@IRF2!1.28!25.04!IRF2;;chr10:31288398..31288455,-!p2@ZNF438!1.28!21.08!ZNF438;;chr14:62162224..62162254,+!p1@HIF1A!1.27!2478.79!HIF1A;;chr2:174828545..174828644,-!p1@SP3!1.27!262.24!SP3;;chr20:48807875..48807982,+!p2@CEBPB!1.26!368.99!CEBPB;;chr2:145277640..145277771,-!p1@ZEB2!1.26!225.34!ZEB2;;chr21:40177892..40177903,+!p2@ETS2!1.26!68.53!ETS2;;chr21:30671189..30671207,+!p4@BACH1!1.26!59.30!BACH1;;chr20:48807456..48807475,+!p3@CEBPB!1.26!32.95!CEBPB;;chr12:54694653..54694672,-!p2@NFE2!1.26!17.13!NFE2;;chr6:15246741..15246765,+!p9@JARID2!1.26!17.13!JARID2;;chr16:88636875..88636886,+!p3@ZC3H18!1.25!23.72!ZC3H18;;chr4:185395633..185395651,-!p2@IRF2!1.24!26.36!IRF2;;chr2:43453734..43453751,-!p1@ZFP36L2!1.23!1649.89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| ||
|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000094;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000738;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000763;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000766;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000771;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000988 | |||
|ffid_belonging_in_development=CL:0000049,CL:0000134 | |ffid_belonging_in_development=CL:0000049,CL:0000134 | ||
|fonse_cell_line= | |fonse_cell_line= | ||
Line 41: | Line 42: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.LQhCAGE/Eosinophils%252c%2520donor2.CNhs12548.12245-129H4.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.LQhCAGE/Eosinophils%252c%2520donor2.CNhs12548.12245-129H4.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.LQhCAGE/Eosinophils%252c%2520donor2.CNhs12548.12245-129H4.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.LQhCAGE/Eosinophils%252c%2520donor2.CNhs12548.12245-129H4.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.LQhCAGE/Eosinophils%252c%2520donor2.CNhs12548.12245-129H4.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:12245-129H4 | |id=FF:12245-129H4 | ||
|is_a=EFO:0002091;;FF:0000249 | |is_a=EFO:0002091;;FF:0000249 | ||
|is_obsolete= | |is_obsolete= | ||
|library_id=CNhs12548 | |library_id=CNhs12548 | ||
|library_id_phase_based= | |library_id_phase_based=2:CNhs12548 | ||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;12245 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;12245 | |||
|name=Eosinophils, donor2 | |name=Eosinophils, donor2 | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
Line 51: | Line 61: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs12548,LSID920,release011,COMPLETED | |profile_hcage=CNhs12548,LSID920,release011,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=,,, | |profile_srnaseq=,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
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Line 90: | Line 101: | ||
|top_motifs=ATF5_CREB3:5.21642831133;CEBPA,B_DDIT3:4.97601968942;NFKB1_REL_RELA:4.81729580813;SPI1:4.68279728668;SPIB:4.24344531809;FOXN1:4.20609396403;ATF4:4.08081897615;ETS1,2:4.02503325908;CREB1:3.72114701483;HLF:3.68803427053;PAX2:3.51844273769;RUNX1..3:3.46564316195;FOXP3:3.33852273058;JUN:3.26925132492;FOX{D1,D2}:3.24121905202;ATF6:3.14821516592;FOX{F1,F2,J1}:3.12505460323;NFE2L2:2.95872448881;ELF1,2,4:2.87414727578;PPARG:2.8189887082;NFIL3:2.80006550012;DMAP1_NCOR{1,2}_SMARC:2.77243741058;MAFB:2.74951607119;BPTF:2.66443427531;NANOG{mouse}:2.60772903571;EP300:2.56042062882;HBP1_HMGB_SSRP1_UBTF:2.55123473359;RXRA_VDR{dimer}:2.41957244449;NFE2:2.38675262313;STAT2,4,6:2.30863476679;FOXO1,3,4:2.27762322576;SREBF1,2:2.25653453219;FOSL2:2.2346447691;ESRRA:2.20175195246;HIF1A:2.14477546194;TGIF1:2.13040533978;PAX3,7:2.05691002892;ALX4:2.02317609977;FOXA2:1.90947105295;NFE2L1:1.88186995169;XBP1:1.84790976909;NFATC1..3:1.80710525719;IRF7:1.77537025686;BACH2:1.76484459856;RORA:1.71724680297;NR1H4:1.67483642446;IRF1,2:1.65926854184;ATF2:1.61207673043;RFX2..5_RFXANK_RFXAP:1.40768926431;RXR{A,B,G}:1.38811115935;SRF:1.25618183522;STAT1,3:1.2331078372;FOS_FOS{B,L1}_JUN{B,D}:1.2285615398;NR5A1,2:1.21646725211;PAX8:1.18116717466;SMAD1..7,9:1.14741634674;TFCP2:0.981425799933;GATA4:0.840169363337;RBPJ:0.826666289515;ALX1:0.787578861762;MYB:0.682022896292;T:0.618661976403;HMGA1,2:0.568324148436;TBX4,5:0.553795670814;EGR1..3:0.45888061144;NKX2-1,4:0.384919195027;POU5F1:0.381697537368;HMX1:0.216422826225;MYFfamily:0.209770005098;POU2F1..3:0.190758918048;MAZ:0.144238715222;TAL1_TCF{3,4,12}:0.105074847284;NFIX:0.0969757159759;GATA6:0.0904494636691;TLX2:0.0492375762061;ZNF423:0.0245508390191;MZF1:0.0244744658759;RFX1:-0.0199070427271;NR3C1:-0.0230566675847;IKZF1:-0.10509517836;SOX2:-0.121912785041;PATZ1:-0.12570011087;ZNF148:-0.127164058229;SP1:-0.258151181489;RREB1:-0.265061395224;EN1,2:-0.274459285953;BREu{core}:-0.293630822817;FOX{I1,J2}:-0.35383297107;TFAP2{A,C}:-0.381105710105;MYOD1:-0.382589803727;SPZ1:-0.383668021442;HOXA9_MEIS1:-0.409311244963;ESR1:-0.454648114332;ZEB1:-0.466869102189;EBF1:-0.512100011131;LEF1_TCF7_TCF7L1,2:-0.593348039353;ELK1,4_GABP{A,B1}:-0.629577412381;MTE{core}:-0.667634836939;ZBTB16:-0.667886091807;HSF1,2:-0.68344182524;PDX1:-0.686493711235;NKX3-2:-0.690380619693;ZNF238:-0.753654079271;TFAP4:-0.831778167443;HNF1A:-0.866671416067;STAT5{A,B}:-0.869875954481;CUX2:-0.878623572068;NKX3-1:-0.882782644178;TFAP2B:-0.886055977544;CDX1,2,4:-0.88882794764;HNF4A_NR2F1,2:-0.895243247382;MEF2{A,B,C,D}:-0.95208463315;LMO2:-0.973616697042;HOX{A5,B5}:-1.00030020856;ADNP_IRX_SIX_ZHX:-1.00950256212;SNAI1..3:-1.01345534513;REST:-1.01450933719;FOXL1:-1.04624825824;GTF2I:-1.05538664647;IKZF2:-1.07150646731;EVI1:-1.07656629481;ZFP161:-1.07859732965;MED-1{core}:-1.08357754681;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-1.10046234058;GLI1..3:-1.15532162429;PRRX1,2:-1.19618696052;FOXP1:-1.23664740765;PRDM1:-1.24903918802;ZIC1..3:-1.26487067347;PITX1..3:-1.28437466887;PAX5:-1.29414440726;TFDP1:-1.30974651773;NHLH1,2:-1.31452483353;NR6A1:-1.36653991743;AHR_ARNT_ARNT2:-1.36819415695;CRX:-1.39461734898;PAX1,9:-1.41529759816;FOXQ1:-1.41627099227;RXR{A,B,G}_{NR1H2,PPAR}dimers:-1.45155215735;TLX1..3_NFIC{dimer}:-1.48907920113;SOX{8,9,10}:-1.52160653323;VSX1,2:-1.53660646097;HIC1:-1.57050225215;KLF4:-1.57206733389;AR:-1.5849249796;TBP:-1.61584592281;TP53:-1.66371917696;NANOG:-1.66692063518;HES1:-1.68523896042;NFY{A,B,C}:-1.70584514755;FOXD3:-1.75074102529;E2F1..5:-1.81191728863;TEAD1:-1.86295850734;OCT4_SOX2{dimer}:-1.87274023094;MTF1:-1.96487785285;ZBTB6:-2.06809789225;POU6F1:-2.15850843584;SOX5:-2.16696180258;TOPORS:-2.20340973527;GCM1,2:-2.21724351238;FOXM1:-2.29869515922;PBX1:-2.32754251097;XCPE1{core}:-2.39670595206;DBP:-2.43653463451;MYBL2:-2.50470015359;SOX17:-2.52163210907;NKX2-3_NKX2-5:-2.59700366398;GTF2A1,2:-2.69513804628;HOX{A4,D4}:-2.69741490486;UFEwm:-2.75900407561;PAX6:-2.76794620201;GFI1:-2.79387181822;NKX2-2,8:-2.80525210391;PAX4:-2.9551845754;NRF1:-2.978606695;GFI1B:-2.9913539151;CDC5L:-3.04085324591;TEF:-3.04501935209;ZNF384:-3.04779184261;ONECUT1,2:-3.08573422095;GZF1:-3.1309955726;HAND1,2:-3.2381906703;HOX{A6,A7,B6,B7}:-3.35440629666;AIRE:-3.36158098253;LHX3,4:-3.44357799974;NKX6-1,2:-3.49672346268;YY1:-3.70066852099;POU3F1..4:-3.76491003702;ZNF143:-3.81361400236;bHLH_family:-3.8410022111;ARID5B:-4.17203587095;POU1F1:-4.58134419159 | |top_motifs=ATF5_CREB3:5.21642831133;CEBPA,B_DDIT3:4.97601968942;NFKB1_REL_RELA:4.81729580813;SPI1:4.68279728668;SPIB:4.24344531809;FOXN1:4.20609396403;ATF4:4.08081897615;ETS1,2:4.02503325908;CREB1:3.72114701483;HLF:3.68803427053;PAX2:3.51844273769;RUNX1..3:3.46564316195;FOXP3:3.33852273058;JUN:3.26925132492;FOX{D1,D2}:3.24121905202;ATF6:3.14821516592;FOX{F1,F2,J1}:3.12505460323;NFE2L2:2.95872448881;ELF1,2,4:2.87414727578;PPARG:2.8189887082;NFIL3:2.80006550012;DMAP1_NCOR{1,2}_SMARC:2.77243741058;MAFB:2.74951607119;BPTF:2.66443427531;NANOG{mouse}:2.60772903571;EP300:2.56042062882;HBP1_HMGB_SSRP1_UBTF:2.55123473359;RXRA_VDR{dimer}:2.41957244449;NFE2:2.38675262313;STAT2,4,6:2.30863476679;FOXO1,3,4:2.27762322576;SREBF1,2:2.25653453219;FOSL2:2.2346447691;ESRRA:2.20175195246;HIF1A:2.14477546194;TGIF1:2.13040533978;PAX3,7:2.05691002892;ALX4:2.02317609977;FOXA2:1.90947105295;NFE2L1:1.88186995169;XBP1:1.84790976909;NFATC1..3:1.80710525719;IRF7:1.77537025686;BACH2:1.76484459856;RORA:1.71724680297;NR1H4:1.67483642446;IRF1,2:1.65926854184;ATF2:1.61207673043;RFX2..5_RFXANK_RFXAP:1.40768926431;RXR{A,B,G}:1.38811115935;SRF:1.25618183522;STAT1,3:1.2331078372;FOS_FOS{B,L1}_JUN{B,D}:1.2285615398;NR5A1,2:1.21646725211;PAX8:1.18116717466;SMAD1..7,9:1.14741634674;TFCP2:0.981425799933;GATA4:0.840169363337;RBPJ:0.826666289515;ALX1:0.787578861762;MYB:0.682022896292;T:0.618661976403;HMGA1,2:0.568324148436;TBX4,5:0.553795670814;EGR1..3:0.45888061144;NKX2-1,4:0.384919195027;POU5F1:0.381697537368;HMX1:0.216422826225;MYFfamily:0.209770005098;POU2F1..3:0.190758918048;MAZ:0.144238715222;TAL1_TCF{3,4,12}:0.105074847284;NFIX:0.0969757159759;GATA6:0.0904494636691;TLX2:0.0492375762061;ZNF423:0.0245508390191;MZF1:0.0244744658759;RFX1:-0.0199070427271;NR3C1:-0.0230566675847;IKZF1:-0.10509517836;SOX2:-0.121912785041;PATZ1:-0.12570011087;ZNF148:-0.127164058229;SP1:-0.258151181489;RREB1:-0.265061395224;EN1,2:-0.274459285953;BREu{core}:-0.293630822817;FOX{I1,J2}:-0.35383297107;TFAP2{A,C}:-0.381105710105;MYOD1:-0.382589803727;SPZ1:-0.383668021442;HOXA9_MEIS1:-0.409311244963;ESR1:-0.454648114332;ZEB1:-0.466869102189;EBF1:-0.512100011131;LEF1_TCF7_TCF7L1,2:-0.593348039353;ELK1,4_GABP{A,B1}:-0.629577412381;MTE{core}:-0.667634836939;ZBTB16:-0.667886091807;HSF1,2:-0.68344182524;PDX1:-0.686493711235;NKX3-2:-0.690380619693;ZNF238:-0.753654079271;TFAP4:-0.831778167443;HNF1A:-0.866671416067;STAT5{A,B}:-0.869875954481;CUX2:-0.878623572068;NKX3-1:-0.882782644178;TFAP2B:-0.886055977544;CDX1,2,4:-0.88882794764;HNF4A_NR2F1,2:-0.895243247382;MEF2{A,B,C,D}:-0.95208463315;LMO2:-0.973616697042;HOX{A5,B5}:-1.00030020856;ADNP_IRX_SIX_ZHX:-1.00950256212;SNAI1..3:-1.01345534513;REST:-1.01450933719;FOXL1:-1.04624825824;GTF2I:-1.05538664647;IKZF2:-1.07150646731;EVI1:-1.07656629481;ZFP161:-1.07859732965;MED-1{core}:-1.08357754681;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-1.10046234058;GLI1..3:-1.15532162429;PRRX1,2:-1.19618696052;FOXP1:-1.23664740765;PRDM1:-1.24903918802;ZIC1..3:-1.26487067347;PITX1..3:-1.28437466887;PAX5:-1.29414440726;TFDP1:-1.30974651773;NHLH1,2:-1.31452483353;NR6A1:-1.36653991743;AHR_ARNT_ARNT2:-1.36819415695;CRX:-1.39461734898;PAX1,9:-1.41529759816;FOXQ1:-1.41627099227;RXR{A,B,G}_{NR1H2,PPAR}dimers:-1.45155215735;TLX1..3_NFIC{dimer}:-1.48907920113;SOX{8,9,10}:-1.52160653323;VSX1,2:-1.53660646097;HIC1:-1.57050225215;KLF4:-1.57206733389;AR:-1.5849249796;TBP:-1.61584592281;TP53:-1.66371917696;NANOG:-1.66692063518;HES1:-1.68523896042;NFY{A,B,C}:-1.70584514755;FOXD3:-1.75074102529;E2F1..5:-1.81191728863;TEAD1:-1.86295850734;OCT4_SOX2{dimer}:-1.87274023094;MTF1:-1.96487785285;ZBTB6:-2.06809789225;POU6F1:-2.15850843584;SOX5:-2.16696180258;TOPORS:-2.20340973527;GCM1,2:-2.21724351238;FOXM1:-2.29869515922;PBX1:-2.32754251097;XCPE1{core}:-2.39670595206;DBP:-2.43653463451;MYBL2:-2.50470015359;SOX17:-2.52163210907;NKX2-3_NKX2-5:-2.59700366398;GTF2A1,2:-2.69513804628;HOX{A4,D4}:-2.69741490486;UFEwm:-2.75900407561;PAX6:-2.76794620201;GFI1:-2.79387181822;NKX2-2,8:-2.80525210391;PAX4:-2.9551845754;NRF1:-2.978606695;GFI1B:-2.9913539151;CDC5L:-3.04085324591;TEF:-3.04501935209;ZNF384:-3.04779184261;ONECUT1,2:-3.08573422095;GZF1:-3.1309955726;HAND1,2:-3.2381906703;HOX{A6,A7,B6,B7}:-3.35440629666;AIRE:-3.36158098253;LHX3,4:-3.44357799974;NKX6-1,2:-3.49672346268;YY1:-3.70066852099;POU3F1..4:-3.76491003702;ZNF143:-3.81361400236;bHLH_family:-3.8410022111;ARID5B:-4.17203587095;POU1F1:-4.58134419159 | ||
|xref= | |xref= | ||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:12245-129H4;search_select_hide=table117:FF:12245-129H4 | |||
}} | }} |
Latest revision as of 18:36, 4 June 2020
Name: | Eosinophils, donor2 |
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Species: | Human (Homo sapiens) |
Library ID: | CNhs12548 |
Sample type: | primary cells |
Genomic View: | UCSC |
RefEX: | Specific genes |
FANTOM CAT: | 1, 2, 3, 4, 5, 6 |
CAGEd-oPOSSUM: | link |
ZENBU report : | link |
Additional information | ||||||||||||||||||||||||||||
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Sample information
RNA information
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CAGE Accession numbers | ||||||||||||||||||||||||||||||||||||||||||||||
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Download raw sequence, BAM & CTSS | ||||||||||||||
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs12548
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs12548
Novel motif | Logo | P-value |
---|---|---|
1 | 1 | 0.245 |
10 | 10 | 0.0925 |
100 | 100 | 0.476 |
101 | 101 | 0.86 |
102 | 102 | 0.945 |
103 | 103 | 0.286 |
104 | 104 | 0.533 |
105 | 105 | 0.252 |
106 | 106 | 4.6952e-4 |
107 | 107 | 0.748 |
108 | 108 | 0.43 |
109 | 109 | 0.203 |
11 | 11 | 0.262 |
110 | 110 | 0.596 |
111 | 111 | 0.383 |
112 | 112 | 0.393 |
113 | 113 | 0.515 |
114 | 114 | 0.0523 |
115 | 115 | 0.375 |
116 | 116 | 0.633 |
117 | 117 | 0.0208 |
118 | 118 | 0.112 |
119 | 119 | 0.443 |
12 | 12 | 0.264 |
120 | 120 | 0.568 |
121 | 121 | 0.836 |
122 | 122 | 0.493 |
123 | 123 | 0.464 |
124 | 124 | 0.867 |
125 | 125 | 0.166 |
126 | 126 | 0.0926 |
127 | 127 | 0.458 |
128 | 128 | 0.0309 |
129 | 129 | 0.619 |
13 | 13 | 0.286 |
130 | 130 | 0.889 |
131 | 131 | 0.575 |
132 | 132 | 0.0785 |
133 | 133 | 0.949 |
134 | 134 | 0.583 |
135 | 135 | 0.199 |
136 | 136 | 0.697 |
137 | 137 | 7.04679e-4 |
138 | 138 | 0.181 |
139 | 139 | 0.0955 |
14 | 14 | 0.347 |
140 | 140 | 0.639 |
141 | 141 | 0.286 |
142 | 142 | 0.594 |
143 | 143 | 0.0185 |
144 | 144 | 0.95 |
145 | 145 | 0.779 |
146 | 146 | 0.413 |
147 | 147 | 0.656 |
148 | 148 | 0.169 |
149 | 149 | 0.643 |
15 | 15 | 0.123 |
150 | 150 | 0.732 |
151 | 151 | 0.254 |
152 | 152 | 0.146 |
153 | 153 | 0.781 |
154 | 154 | 1 |
155 | 155 | 0.145 |
156 | 156 | 0.899 |
157 | 157 | 0.976 |
158 | 158 | 0.00467 |
159 | 159 | 0.412 |
16 | 16 | 0.582 |
160 | 160 | 0.926 |
161 | 161 | 0.734 |
162 | 162 | 0.0582 |
163 | 163 | 0.351 |
164 | 164 | 0.212 |
165 | 165 | 0.301 |
166 | 166 | 0.722 |
167 | 167 | 0.817 |
168 | 168 | 0.182 |
169 | 169 | 0.0863 |
17 | 17 | 0.303 |
18 | 18 | 0.174 |
19 | 19 | 0.541 |
2 | 2 | 0.93 |
20 | 20 | 0.539 |
21 | 21 | 0.964 |
22 | 22 | 0.162 |
23 | 23 | 0.0206 |
24 | 24 | 0.379 |
25 | 25 | 0.314 |
26 | 26 | 0.156 |
27 | 27 | 0.894 |
28 | 28 | 0.351 |
29 | 29 | 0.386 |
3 | 3 | 0.324 |
30 | 30 | 0.666 |
31 | 31 | 0.897 |
32 | 32 | 0.307 |
33 | 33 | 0.333 |
34 | 34 | 0.569 |
35 | 35 | 0.139 |
36 | 36 | 0.228 |
37 | 37 | 0.103 |
38 | 38 | 0.513 |
39 | 39 | 0.795 |
4 | 4 | 0.824 |
40 | 40 | 0.311 |
41 | 41 | 0.00333 |
42 | 42 | 0.581 |
43 | 43 | 0.0625 |
44 | 44 | 0.93 |
45 | 45 | 0.42 |
46 | 46 | 0.386 |
47 | 47 | 0.641 |
48 | 48 | 0.734 |
49 | 49 | 0.133 |
5 | 5 | 0.142 |
50 | 50 | 0.956 |
51 | 51 | 0.398 |
52 | 52 | 0.298 |
53 | 53 | 0.389 |
54 | 54 | 0.345 |
55 | 55 | 0.949 |
56 | 56 | 0.792 |
57 | 57 | 0.532 |
58 | 58 | 0.223 |
59 | 59 | 0.0816 |
6 | 6 | 0.842 |
60 | 60 | 0.0408 |
61 | 61 | 0.299 |
62 | 62 | 0.0934 |
63 | 63 | 0.677 |
64 | 64 | 0.599 |
65 | 65 | 0.233 |
66 | 66 | 0.291 |
67 | 67 | 0.491 |
68 | 68 | 0.339 |
69 | 69 | 0.519 |
7 | 7 | 0.26 |
70 | 70 | 0.22 |
71 | 71 | 0.0425 |
72 | 72 | 0.452 |
73 | 73 | 0.191 |
74 | 74 | 0.0944 |
75 | 75 | 0.256 |
76 | 76 | 0.191 |
77 | 77 | 0.665 |
78 | 78 | 0.245 |
79 | 79 | 0.922 |
8 | 8 | 0.653 |
80 | 80 | 0.0284 |
81 | 81 | 0.428 |
82 | 82 | 0.106 |
83 | 83 | 0.132 |
84 | 84 | 0.439 |
85 | 85 | 0.0746 |
86 | 86 | 0.021 |
87 | 87 | 0.319 |
88 | 88 | 0.696 |
89 | 89 | 0.127 |
9 | 9 | 0.218 |
90 | 90 | 0.316 |
91 | 91 | 0.486 |
92 | 92 | 0.398 |
93 | 93 | 0.064 |
94 | 94 | 0.0661 |
95 | 95 | 0.208 |
96 | 96 | 0.503 |
97 | 97 | 0.928 |
98 | 98 | 0.122 |
99 | 99 | 0.0134 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs12548
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
EFO:0002091 biological replicate
FF:0000249 human eosinophil- heparinase treated sample
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000988 (hematopoietic cell)
0000548 (animal cell)
0000763 (myeloid cell)
0002371 (somatic cell)
0000766 (myeloid leukocyte)
0000081 (blood cell)
0000219 (motile cell)
0000738 (leukocyte)
0000255 (eukaryotic cell)
0000094 (granulocyte)
0000771 (eosinophil)
FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000054 (human eosinophil sample)
0000249 (human eosinophil- heparinase treated sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000049 (common myeloid progenitor)
CL:0000134 (mesenchymal cell)