FF:12822-136I5: Difference between revisions
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{{f5samples | {{f5samples | ||
|ancestors_in_anatomy_facet=UBERON: | |DRA_sample_Accession=CAGE@SAMD00005756 | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL: | |accession_numbers=CAGE;DRX008587;DRR009459;DRZ000884;DRZ002269;DRZ012234;DRZ013619 | ||
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000922,UBERON:0000061,UBERON:0000465,UBERON:0001062 | |||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0002321,CL:0000255,CL:0000034,CL:0002322 | |||
|ancestors_in_disease_facet= | |ancestors_in_disease_facet= | ||
|ancestors_in_ff_facet=FF:0000102,FF:0000003,FF:0000210,FF:0000101,FF:0000001,FF:0101581,FF:0000343,FF:0000350,FF:0000400,FF:0100669,FF:0000592 | |||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|data_phase=2 | |||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score | |||
|fonse_cell_line=FF:0100669 | |fonse_cell_line=FF:0100669 | ||
|fonse_cell_line_closure=FF:0100669 | |fonse_cell_line_closure=FF:0100669 | ||
| Line 35: | Line 41: | ||
|fonse_treatment_closure=FF:0000343,FF:0000592,FF:12822-136I5 | |fonse_treatment_closure=FF:0000343,FF:0000592,FF:12822-136I5 | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.timecourse.hCAGE/H9%2520Embryonic%2520Stem%2520cells%252c%2520biol_rep3%2520%2528H9ES-3%2529.CNhs12837.12822-136I5.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.timecourse.hCAGE/H9%2520Embryonic%2520Stem%2520cells%252c%2520biol_rep3%2520%2528H9ES-3%2529.CNhs12837.12822-136I5.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.timecourse.hCAGE/H9%2520Embryonic%2520Stem%2520cells%252c%2520biol_rep3%2520%2528H9ES-3%2529.CNhs12837.12822-136I5.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.timecourse.hCAGE/H9%2520Embryonic%2520Stem%2520cells%252c%2520biol_rep3%2520%2528H9ES-3%2529.CNhs12837.12822-136I5.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.timecourse.hCAGE/H9%2520Embryonic%2520Stem%2520cells%252c%2520biol_rep3%2520%2528H9ES-3%2529.CNhs12837.12822-136I5.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:12822-136I5 | |id=FF:12822-136I5 | ||
|is_a=EFO:0002091;;FF: | |is_a=EFO:0002091;;FF:0000592 | ||
|is_obsolete= | |||
|library_id=CNhs12837 | |||
|library_id_phase_based=2:CNhs12837 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;12822 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;12822 | |||
|name=H9 Embryonic Stem cells, biol_rep3 (H9ES-3) | |name=H9 Embryonic Stem cells, biol_rep3 (H9ES-3) | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
| Line 42: | Line 60: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs12837,LSID972,release012,COMPLETED | |profile_hcage=CNhs12837,LSID972,release012,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=,,, | |profile_srnaseq=,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
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| |||
|rna_box=136 | |rna_box=136 | ||
|rna_catalog_number= | |rna_catalog_number= | ||
| Line 55: | Line 76: | ||
|rna_sample_type= | |rna_sample_type= | ||
|rna_tube_id=136I5 | |rna_tube_id=136I5 | ||
|rna_weight_ug=7 | |rna_weight_ug=7 | ||
|sample_age= | |sample_age= | ||
|sample_category=time courses | |||
|sample_cell_catalog= | |sample_cell_catalog= | ||
|sample_cell_line=H9 | |sample_cell_line=H9 | ||
| Line 69: | Line 91: | ||
|sample_ethnicity= | |sample_ethnicity= | ||
|sample_experimental_condition=Human ES cell differentiation to melanocyte | |sample_experimental_condition=Human ES cell differentiation to melanocyte | ||
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;7.03254349350029e-291!GO:0043226;organelle;4.22960339554929e-245!GO:0043229;intracellular organelle;1.35208408448418e-244!GO:0043231;intracellular membrane-bound organelle;6.51828751345809e-238!GO:0043227;membrane-bound organelle;6.51828751345809e-238!GO:0005737;cytoplasm;1.93644260959292e-176!GO:0044422;organelle part;1.05405601854165e-158!GO:0044446;intracellular organelle part;3.65083470568915e-157!GO:0005634;nucleus;8.93343478536738e-123!GO:0032991;macromolecular complex;4.14419853957396e-117!GO:0044444;cytoplasmic part;1.60463160895087e-115!GO:0044238;primary metabolic process;1.82620188598562e-108!GO:0044237;cellular metabolic process;2.11193890605301e-107!GO:0043170;macromolecule metabolic process;1.19872458537279e-104!GO:0030529;ribonucleoprotein complex;2.95428371221949e-98!GO:0044428;nuclear part;5.73283184628242e-93!GO:0003723;RNA binding;2.54795879839531e-91!GO:0043233;organelle lumen;1.09584425112746e-86!GO:0031974;membrane-enclosed lumen;1.09584425112746e-86!GO:0005739;mitochondrion;1.71022136301531e-71!GO:0043283;biopolymer metabolic process;3.68201693833168e-71!GO:0005515;protein binding;3.70356502875773e-69!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;1.4997185856881e-66!GO:0006396;RNA processing;6.31606799375328e-66!GO:0010467;gene expression;4.48623065540874e-62!GO:0043234;protein complex;4.72838570347075e-59!GO:0016043;cellular component organization and biogenesis;2.11751498939967e-57!GO:0031981;nuclear lumen;9.41833173831885e-57!GO:0005840;ribosome;5.16282706412262e-54!GO:0006412;translation;3.39800311792747e-51!GO:0006996;organelle organization and biogenesis;1.07388169184708e-50!GO:0016071;mRNA metabolic process;1.37106850841475e-49!GO:0043228;non-membrane-bound organelle;2.79030214690206e-48!GO:0043232;intracellular non-membrane-bound organelle;2.79030214690206e-48!GO:0044429;mitochondrial part;2.14363248013571e-47!GO:0006259;DNA metabolic process;9.02179235269517e-46!GO:0003735;structural constituent of ribosome;1.01466463096532e-45!GO:0008380;RNA splicing;1.1756021389305e-45!GO:0003676;nucleic acid binding;4.16150010107051e-45!GO:0019538;protein metabolic process;1.09350401282059e-43!GO:0031967;organelle envelope;4.34188085108958e-42!GO:0006397;mRNA processing;4.77148570679662e-42!GO:0031975;envelope;8.82624743137314e-42!GO:0031090;organelle membrane;6.09534777682161e-41!GO:0033279;ribosomal subunit;7.89389614552732e-41!GO:0044249;cellular biosynthetic process;1.194730515202e-40!GO:0009058;biosynthetic process;5.40933478584839e-40!GO:0022613;ribonucleoprotein complex biogenesis and assembly;1.54883335252936e-39!GO:0065003;macromolecular complex assembly;1.72254067988409e-39!GO:0033036;macromolecule localization;2.05872371137152e-39!GO:0015031;protein transport;5.59604819520192e-39!GO:0009059;macromolecule biosynthetic process;2.83589302659692e-38!GO:0044267;cellular protein metabolic process;1.07543890532903e-37!GO:0044260;cellular macromolecule metabolic process;2.03681680418175e-37!GO:0022607;cellular component assembly;2.29538497828872e-36!GO:0016070;RNA metabolic process;3.76249079576845e-35!GO:0046907;intracellular transport;5.12490844147546e-35!GO:0008104;protein localization;2.09127041332654e-34!GO:0045184;establishment of protein localization;6.4339165299855e-34!GO:0005654;nucleoplasm;1.66964078373311e-33!GO:0000166;nucleotide binding;4.1992092910049e-33!GO:0005681;spliceosome;7.47470136314369e-33!GO:0005829;cytosol;1.10767704381695e-32!GO:0007049;cell cycle;4.50113045162732e-31!GO:0005830;cytosolic ribosome (sensu Eukaryota);1.11876022413207e-28!GO:0005740;mitochondrial envelope;1.19014964835893e-28!GO:0019866;organelle inner membrane;1.83225320129408e-28!GO:0005694;chromosome;1.52634058877351e-27!GO:0044451;nucleoplasm part;4.17890041593628e-27!GO:0006886;intracellular protein transport;1.45588992466522e-26!GO:0031966;mitochondrial membrane;2.96262649926435e-26!GO:0005743;mitochondrial inner membrane;3.73826081245001e-26!GO:0006974;response to DNA damage stimulus;2.08647652740738e-25!GO:0051276;chromosome organization and biogenesis;3.21650011003276e-25!GO:0005730;nucleolus;9.19638609939287e-25!GO:0044427;chromosomal part;2.84584848130876e-24!GO:0051649;establishment of cellular localization;9.55605336311343e-24!GO:0044445;cytosolic part;2.23680058546591e-23!GO:0022402;cell cycle process;3.98418753778709e-23!GO:0000278;mitotic cell cycle;1.01530104922485e-22!GO:0031980;mitochondrial lumen;1.25591145111651e-22!GO:0005759;mitochondrial matrix;1.25591145111651e-22!GO:0051641;cellular localization;1.38241127784299e-22!GO:0032553;ribonucleotide binding;2.34605242401238e-22!GO:0032555;purine ribonucleotide binding;2.34605242401238e-22!GO:0016874;ligase activity;3.67574124531064e-22!GO:0016462;pyrophosphatase activity;3.72538910929259e-22!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;5.69251789204107e-22!GO:0044455;mitochondrial membrane part;5.73092522938103e-22!GO:0016817;hydrolase activity, acting on acid anhydrides;8.68278176553876e-22!GO:0006281;DNA repair;1.67929160419809e-21!GO:0006119;oxidative phosphorylation;1.74800913086329e-21!GO:0017076;purine nucleotide binding;2.0709572331952e-21!GO:0022618;protein-RNA complex assembly;2.98978162340708e-21!GO:0015934;large ribosomal subunit;3.93962246036302e-21!GO:0017111;nucleoside-triphosphatase activity;6.40525421275748e-21!GO:0015935;small ribosomal subunit;9.58433779052159e-21!GO:0000087;M phase of mitotic cell cycle;2.17141512797936e-20!GO:0022403;cell cycle phase;2.20056208575167e-20!GO:0044265;cellular macromolecule catabolic process;5.05567713737553e-20!GO:0007067;mitosis;5.32875708552848e-20!GO:0005524;ATP binding;1.05347364375783e-19!GO:0006260;DNA replication;1.75372234940382e-19!GO:0051301;cell division;1.83070526215779e-19!GO:0032559;adenyl ribonucleotide binding;2.31635930826826e-19!GO:0006512;ubiquitin cycle;2.88065190984884e-19!GO:0006325;establishment and/or maintenance of chromatin architecture;2.88995939883453e-19!GO:0042254;ribosome biogenesis and assembly;9.0500502391679e-19!GO:0006323;DNA packaging;1.19412209739332e-18!GO:0000279;M phase;1.83651658233586e-18!GO:0030554;adenyl nucleotide binding;3.4471375669554e-18!GO:0051603;proteolysis involved in cellular protein catabolic process;4.01414704803321e-18!GO:0019941;modification-dependent protein catabolic process;6.88010587141788e-18!GO:0043632;modification-dependent macromolecule catabolic process;6.88010587141788e-18!GO:0043285;biopolymer catabolic process;8.14919917482041e-18!GO:0006511;ubiquitin-dependent protein catabolic process;9.79326827784641e-18!GO:0044257;cellular protein catabolic process;1.11961172143202e-17!GO:0006457;protein folding;1.51942209064559e-17!GO:0000398;nuclear mRNA splicing, via spliceosome;3.88229220822723e-17!GO:0000375;RNA splicing, via transesterification reactions;3.88229220822723e-17!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;3.88229220822723e-17!GO:0009057;macromolecule catabolic process;3.96892122605701e-17!GO:0008135;translation factor activity, nucleic acid binding;9.35443370828505e-17!GO:0005746;mitochondrial respiratory chain;2.02556916755771e-16!GO:0000502;proteasome complex (sensu Eukaryota);2.75559434216448e-16!GO:0005761;mitochondrial ribosome;5.94102965942503e-16!GO:0000313;organellar ribosome;5.94102965942503e-16!GO:0050136;NADH dehydrogenase (quinone) activity;8.84739456382255e-16!GO:0003954;NADH dehydrogenase activity;8.84739456382255e-16!GO:0008137;NADH dehydrogenase (ubiquinone) activity;8.84739456382255e-16!GO:0012505;endomembrane system;9.73314273936048e-16!GO:0009719;response to endogenous stimulus;1.02493755147989e-15!GO:0031965;nuclear membrane;1.21518097554997e-15!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;2.19806578434315e-15!GO:0030163;protein catabolic process;3.05003869616531e-15!GO:0044248;cellular catabolic process;5.70721906411688e-15!GO:0006399;tRNA metabolic process;7.47608242661323e-15!GO:0044453;nuclear membrane part;1.14874037509206e-14!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);1.22479423389499e-14!GO:0016604;nuclear body;1.49796952112596e-14!GO:0043412;biopolymer modification;1.71822804129839e-14!GO:0048770;pigment granule;2.1573194227707e-14!GO:0042470;melanosome;2.1573194227707e-14!GO:0004386;helicase activity;2.18339125311723e-14!GO:0005635;nuclear envelope;3.10242675766982e-14!GO:0005643;nuclear pore;3.74708643376716e-14!GO:0006403;RNA localization;5.07332391058181e-14!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);5.87032088304044e-14!GO:0006605;protein targeting;1.27345231181205e-13!GO:0050657;nucleic acid transport;1.29709388066469e-13!GO:0051236;establishment of RNA localization;1.29709388066469e-13!GO:0050658;RNA transport;1.29709388066469e-13!GO:0042775;organelle ATP synthesis coupled electron transport;1.34081213156005e-13!GO:0042773;ATP synthesis coupled electron transport;1.34081213156005e-13!GO:0030964;NADH dehydrogenase complex (quinone);1.56741328929367e-13!GO:0045271;respiratory chain complex I;1.56741328929367e-13!GO:0005747;mitochondrial respiratory chain complex I;1.56741328929367e-13!GO:0051082;unfolded protein binding;1.65120707053638e-13!GO:0042623;ATPase activity, coupled;1.99499609224368e-13!GO:0016887;ATPase activity;2.00439376237118e-13!GO:0005794;Golgi apparatus;2.06470484128125e-13!GO:0008134;transcription factor binding;3.09983029512031e-13!GO:0006364;rRNA processing;3.14939086780519e-13!GO:0016072;rRNA metabolic process;4.06123170110302e-13!GO:0006413;translational initiation;4.56284202910209e-13!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;5.46306931570189e-13!GO:0051186;cofactor metabolic process;1.1044558386757e-12!GO:0000785;chromatin;1.1781714820829e-12!GO:0003743;translation initiation factor activity;1.56714888951194e-12!GO:0006446;regulation of translational initiation;1.87189280703446e-12!GO:0016607;nuclear speck;2.39449574381534e-12!GO:0065004;protein-DNA complex assembly;4.01604026095752e-12!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;4.50960131652555e-12!GO:0006464;protein modification process;4.94081542606424e-12!GO:0008026;ATP-dependent helicase activity;6.56656315833027e-12!GO:0015630;microtubule cytoskeleton;8.94110657286266e-12!GO:0006333;chromatin assembly or disassembly;9.47057552588671e-12!GO:0051028;mRNA transport;9.90931335769252e-12!GO:0065002;intracellular protein transport across a membrane;2.43113207765323e-11!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;2.86961992791432e-11!GO:0004812;aminoacyl-tRNA ligase activity;2.86961992791432e-11!GO:0016875;ligase activity, forming carbon-oxygen bonds;2.86961992791432e-11!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;3.04681147951133e-11!GO:0043687;post-translational protein modification;3.41423096029397e-11!GO:0006261;DNA-dependent DNA replication;4.05413752513726e-11!GO:0016740;transferase activity;4.93337837397516e-11!GO:0008565;protein transporter activity;5.12950638413139e-11!GO:0006732;coenzyme metabolic process;5.67171752450264e-11!GO:0006461;protein complex assembly;5.72896885449842e-11!GO:0048193;Golgi vesicle transport;6.45042051960115e-11!GO:0046930;pore complex;8.75275567808133e-11!GO:0043038;amino acid activation;8.97583210506513e-11!GO:0006418;tRNA aminoacylation for protein translation;8.97583210506513e-11!GO:0043039;tRNA aminoacylation;8.97583210506513e-11!GO:0016568;chromatin modification;1.1698244483396e-10!GO:0030532;small nuclear ribonucleoprotein complex;1.60810413058076e-10!GO:0006913;nucleocytoplasmic transport;1.67010697126228e-10!GO:0016879;ligase activity, forming carbon-nitrogen bonds;2.11221560262476e-10!GO:0051169;nuclear transport;4.78450587561044e-10!GO:0000775;chromosome, pericentric region;1.32080328536074e-09!GO:0008639;small protein conjugating enzyme activity;1.45540434874682e-09!GO:0016779;nucleotidyltransferase activity;1.55157356763603e-09!GO:0051726;regulation of cell cycle;2.44645999527141e-09!GO:0050794;regulation of cellular process;2.60237392064835e-09!GO:0000074;regulation of progression through cell cycle;2.89652849150538e-09!GO:0004842;ubiquitin-protein ligase activity;3.04772556147757e-09!GO:0009259;ribonucleotide metabolic process;3.62599991555313e-09!GO:0009055;electron carrier activity;3.70412659446123e-09!GO:0006163;purine nucleotide metabolic process;4.05146175384961e-09!GO:0005783;endoplasmic reticulum;4.17563580292036e-09!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;4.63491320465169e-09!GO:0019222;regulation of metabolic process;5.645486381072e-09!GO:0019787;small conjugating protein ligase activity;6.16729922029724e-09!GO:0006164;purine nucleotide biosynthetic process;8.17013638136397e-09!GO:0031497;chromatin assembly;9.52506382968741e-09!GO:0006334;nucleosome assembly;1.0130179271509e-08!GO:0003697;single-stranded DNA binding;1.27209530279325e-08!GO:0009260;ribonucleotide biosynthetic process;1.66349336054027e-08!GO:0003899;DNA-directed RNA polymerase activity;2.58498668686594e-08!GO:0043566;structure-specific DNA binding;2.87520744701905e-08!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;2.9192722939649e-08!GO:0009056;catabolic process;2.95026219442446e-08!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;3.29350290859402e-08!GO:0016192;vesicle-mediated transport;3.45539154685312e-08!GO:0008094;DNA-dependent ATPase activity;3.76001530475588e-08!GO:0009150;purine ribonucleotide metabolic process;5.28965442761318e-08!GO:0005819;spindle;7.21108911299719e-08!GO:0006366;transcription from RNA polymerase II promoter;7.59901249458473e-08!GO:0000245;spliceosome assembly;7.75591820849729e-08!GO:0007051;spindle organization and biogenesis;8.2169446104263e-08!GO:0017038;protein import;8.87441226921595e-08!GO:0009152;purine ribonucleotide biosynthetic process;1.09192549211241e-07!GO:0009060;aerobic respiration;1.22183109700084e-07!GO:0032446;protein modification by small protein conjugation;1.36156397866837e-07!GO:0016881;acid-amino acid ligase activity;1.36930370739179e-07!GO:0005657;replication fork;1.46638218157566e-07!GO:0003712;transcription cofactor activity;1.49323901526913e-07!GO:0051188;cofactor biosynthetic process;1.63403083222896e-07!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;2.2125570793439e-07!GO:0015986;ATP synthesis coupled proton transport;2.32642783710554e-07!GO:0015985;energy coupled proton transport, down electrochemical gradient;2.32642783710554e-07!GO:0045333;cellular respiration;2.45949311005878e-07!GO:0005793;ER-Golgi intermediate compartment;2.4609282816099e-07!GO:0007010;cytoskeleton organization and biogenesis;2.97034781056945e-07!GO:0007005;mitochondrion organization and biogenesis;3.14127275026088e-07!GO:0016567;protein ubiquitination;3.14127275026088e-07!GO:0044432;endoplasmic reticulum part;3.1510286717257e-07!GO:0019829;cation-transporting ATPase activity;4.52838494995824e-07!GO:0031202;RNA splicing factor activity, transesterification mechanism;4.56012137533024e-07!GO:0043623;cellular protein complex assembly;7.53773437161797e-07!GO:0006350;transcription;7.73553031099249e-07!GO:0016772;transferase activity, transferring phosphorus-containing groups;1.10010691796157e-06!GO:0000075;cell cycle checkpoint;1.32103435215253e-06!GO:0009108;coenzyme biosynthetic process;1.34682317808421e-06!GO:0031323;regulation of cellular metabolic process;1.39819285255954e-06!GO:0009199;ribonucleoside triphosphate metabolic process;1.41719270863269e-06!GO:0003724;RNA helicase activity;1.43021975256941e-06!GO:0050789;regulation of biological process;1.48008376167123e-06!GO:0009142;nucleoside triphosphate biosynthetic process;1.52837683477408e-06!GO:0009201;ribonucleoside triphosphate biosynthetic process;1.52837683477408e-06!GO:0016469;proton-transporting two-sector ATPase complex;1.83128701856745e-06!GO:0009141;nucleoside triphosphate metabolic process;1.87772867239395e-06!GO:0006099;tricarboxylic acid cycle;2.02499521189562e-06!GO:0046356;acetyl-CoA catabolic process;2.02499521189562e-06!GO:0016741;transferase activity, transferring one-carbon groups;2.16560943975459e-06!GO:0045259;proton-transporting ATP synthase complex;2.40809907174189e-06!GO:0009117;nucleotide metabolic process;2.57082275728085e-06!GO:0048475;coated membrane;2.75419774846663e-06!GO:0030117;membrane coat;2.75419774846663e-06!GO:0006084;acetyl-CoA metabolic process;2.92903250331706e-06!GO:0009205;purine ribonucleoside triphosphate metabolic process;3.01071813266923e-06!GO:0009144;purine nucleoside triphosphate metabolic process;3.01071813266923e-06!GO:0015078;hydrogen ion transmembrane transporter activity;3.08005270926362e-06!GO:0008168;methyltransferase activity;3.34866435832854e-06!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;3.38953047644392e-06!GO:0009145;purine nucleoside triphosphate biosynthetic process;3.38953047644392e-06!GO:0006754;ATP biosynthetic process;4.23648669760214e-06!GO:0006753;nucleoside phosphate metabolic process;4.23648669760214e-06!GO:0007017;microtubule-based process;4.38024706356823e-06!GO:0005839;proteasome core complex (sensu Eukaryota);4.38948064349893e-06!GO:0005667;transcription factor complex;4.45944037265289e-06!GO:0005813;centrosome;4.91869546370866e-06!GO:0046034;ATP metabolic process;5.07429736773189e-06!GO:0051246;regulation of protein metabolic process;5.07429736773189e-06!GO:0003682;chromatin binding;5.38522457412058e-06!GO:0006752;group transfer coenzyme metabolic process;5.38522457412058e-06!GO:0005874;microtubule;5.53724210227394e-06!GO:0006888;ER to Golgi vesicle-mediated transport;6.08275798451557e-06!GO:0016363;nuclear matrix;6.5636078728156e-06!GO:0044431;Golgi apparatus part;6.69049932811961e-06!GO:0005762;mitochondrial large ribosomal subunit;7.21004873472539e-06!GO:0000315;organellar large ribosomal subunit;7.21004873472539e-06!GO:0006793;phosphorus metabolic process;7.30358416865018e-06!GO:0006796;phosphate metabolic process;7.30358416865018e-06!GO:0003924;GTPase activity;8.04225393683485e-06!GO:0005768;endosome;8.36104158293337e-06!GO:0051329;interphase of mitotic cell cycle;8.71082103702857e-06!GO:0051325;interphase;1.10057723487801e-05!GO:0000314;organellar small ribosomal subunit;1.13191189887031e-05!GO:0005763;mitochondrial small ribosomal subunit;1.13191189887031e-05!GO:0005815;microtubule organizing center;1.1804004816091e-05!GO:0051427;hormone receptor binding;1.25184742548284e-05!GO:0000776;kinetochore;1.28682556402634e-05!GO:0044452;nucleolar part;1.32080989655618e-05!GO:0008033;tRNA processing;1.42866608286424e-05!GO:0010468;regulation of gene expression;1.46352088536999e-05!GO:0007059;chromosome segregation;1.54381713540237e-05!GO:0016853;isomerase activity;1.67321655649928e-05!GO:0005525;GTP binding;1.72210861665274e-05!GO:0051168;nuclear export;1.76544508242347e-05!GO:0006302;double-strand break repair;1.77200268715011e-05!GO:0004298;threonine endopeptidase activity;2.2440248054506e-05!GO:0032774;RNA biosynthetic process;2.2442180307828e-05!GO:0031988;membrane-bound vesicle;2.38343304089269e-05!GO:0006613;cotranslational protein targeting to membrane;2.45863016125506e-05!GO:0009109;coenzyme catabolic process;2.4838701114769e-05!GO:0019219;regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;2.54076792234444e-05!GO:0051052;regulation of DNA metabolic process;2.60995626661112e-05!GO:0006383;transcription from RNA polymerase III promoter;2.66563500328615e-05!GO:0035257;nuclear hormone receptor binding;2.80943171747834e-05!GO:0006351;transcription, DNA-dependent;2.86722206794972e-05!GO:0031982;vesicle;2.89010832536577e-05!GO:0016023;cytoplasmic membrane-bound vesicle;3.27740931249761e-05!GO:0012501;programmed cell death;3.40311740524205e-05!GO:0030120;vesicle coat;3.51921243806269e-05!GO:0030662;coated vesicle membrane;3.51921243806269e-05!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;3.79446588660042e-05!GO:0006401;RNA catabolic process;4.00517215110152e-05!GO:0000226;microtubule cytoskeleton organization and biogenesis;4.02264063449604e-05!GO:0043021;ribonucleoprotein binding;4.30089567061037e-05!GO:0031410;cytoplasmic vesicle;4.36150917062679e-05!GO:0003690;double-stranded DNA binding;4.36260489947611e-05!GO:0006402;mRNA catabolic process;4.38204020951671e-05!GO:0006915;apoptosis;4.6854756812797e-05!GO:0051170;nuclear import;4.80299763717923e-05!GO:0000151;ubiquitin ligase complex;4.87801685761562e-05!GO:0042175;nuclear envelope-endoplasmic reticulum network;5.02538951593219e-05!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;5.03033035579463e-05!GO:0016859;cis-trans isomerase activity;5.03782082213929e-05!GO:0005789;endoplasmic reticulum membrane;5.47278221542534e-05!GO:0051187;cofactor catabolic process;6.17992915486103e-05!GO:0007093;mitotic cell cycle checkpoint;6.49751289605866e-05!GO:0016310;phosphorylation;6.50036530873487e-05!GO:0008186;RNA-dependent ATPase activity;6.84109537463417e-05!GO:0000139;Golgi membrane;7.81982892126325e-05!GO:0003729;mRNA binding;8.09428517816376e-05!GO:0015077;monovalent inorganic cation transmembrane transporter activity;8.86798372759869e-05!GO:0005769;early endosome;8.97937191893498e-05!GO:0030880;RNA polymerase complex;9.10231975903783e-05!GO:0003678;DNA helicase activity;9.74795234702909e-05!GO:0000059;protein import into nucleus, docking;0.000101683121199293!GO:0006520;amino acid metabolic process;0.000112670145982819!GO:0006606;protein import into nucleus;0.000119349347686142!GO:0032561;guanyl ribonucleotide binding;0.000123729766213776!GO:0019001;guanyl nucleotide binding;0.000123729766213776!GO:0003684;damaged DNA binding;0.000151140785461913!GO:0051087;chaperone binding;0.000161667624220981!GO:0043681;protein import into mitochondrion;0.00016247868226409!GO:0006338;chromatin remodeling;0.000188054891180087!GO:0007052;mitotic spindle organization and biogenesis;0.000202465448877126!GO:0006612;protein targeting to membrane;0.000211257260247664!GO:0048471;perinuclear region of cytoplasm;0.000216016512593801!GO:0004004;ATP-dependent RNA helicase activity;0.000220820561026931!GO:0032508;DNA duplex unwinding;0.000241802826539052!GO:0032392;DNA geometric change;0.000241802826539052!GO:0031252;leading edge;0.000247491189246756!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.000249641953195178!GO:0000428;DNA-directed RNA polymerase complex;0.000249641953195178!GO:0009165;nucleotide biosynthetic process;0.000295937739252548!GO:0044440;endosomal part;0.000295937739252548!GO:0010008;endosome membrane;0.000295937739252548!GO:0008219;cell death;0.000320609504547996!GO:0016265;death;0.000320609504547996!GO:0008654;phospholipid biosynthetic process;0.00032537763406202!GO:0005684;U2-dependent spliceosome;0.000326276697900623!GO:0005770;late endosome;0.000336387989284931!GO:0003677;DNA binding;0.000343086176223466!GO:0045454;cell redox homeostasis;0.000357150588329166!GO:0015631;tubulin binding;0.000357150588329166!GO:0005798;Golgi-associated vesicle;0.000380922785637428!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.000385039178853198!GO:0006357;regulation of transcription from RNA polymerase II promoter;0.000414894515602944!GO:0007088;regulation of mitosis;0.000423184648715217!GO:0006310;DNA recombination;0.000432374274561655!GO:0006414;translational elongation;0.000432374274561655!GO:0006839;mitochondrial transport;0.00045423086740241!GO:0003713;transcription coactivator activity;0.000463201670001971!GO:0007006;mitochondrial membrane organization and biogenesis;0.000483493070073692!GO:0006730;one-carbon compound metabolic process;0.000488430592948726!GO:0009112;nucleobase metabolic process;0.000510005043165085!GO:0031324;negative regulation of cellular metabolic process;0.000525764371275825!GO:0051920;peroxiredoxin activity;0.000572881485949784!GO:0006352;transcription initiation;0.000577851648510565!GO:0004527;exonuclease activity;0.000596238957468584!GO:0016787;hydrolase activity;0.000633351602363553!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.000636543845066424!GO:0006268;DNA unwinding during replication;0.000643374608849153!GO:0032259;methylation;0.000676999127626822!GO:0045449;regulation of transcription;0.000701249403298058!GO:0006270;DNA replication initiation;0.000712029349375017!GO:0042802;identical protein binding;0.000712029349375017!GO:0015980;energy derivation by oxidation of organic compounds;0.000718911294411741!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.000720863728882911!GO:0008757;S-adenosylmethionine-dependent methyltransferase activity;0.000747196343436162!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.00081414772587784!GO:0000228;nuclear chromosome;0.000833835950422091!GO:0000786;nucleosome;0.000836034274544826!GO:0016281;eukaryotic translation initiation factor 4F complex;0.00084465968422456!GO:0006144;purine base metabolic process;0.000898668851633156!GO:0051252;regulation of RNA metabolic process;0.000929651719816447!GO:0005788;endoplasmic reticulum lumen;0.00097289893096656!GO:0008250;oligosaccharyl transferase complex;0.000976949824384807!GO:0043414;biopolymer methylation;0.000983181427688276!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.00099919832944074!GO:0006405;RNA export from nucleus;0.00107342994654154!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00107342994654154!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00107342994654154!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00107342994654154!GO:0007264;small GTPase mediated signal transduction;0.00109008944973391!GO:0005048;signal sequence binding;0.00109008944973391!GO:0016272;prefoldin complex;0.00111529551150289!GO:0032200;telomere organization and biogenesis;0.00115741590846563!GO:0000723;telomere maintenance;0.00115741590846563!GO:0006275;regulation of DNA replication;0.00117122921863618!GO:0006541;glutamine metabolic process;0.00118675848164355!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.00122647957597661!GO:0006626;protein targeting to mitochondrion;0.00135730186757588!GO:0005852;eukaryotic translation initiation factor 3 complex;0.00138491237024691!GO:0000049;tRNA binding;0.00140293167248418!GO:0008092;cytoskeletal protein binding;0.00140299144620643!GO:0009892;negative regulation of metabolic process;0.00140755746228087!GO:0000184;mRNA catabolic process, nonsense-mediated decay;0.00162255569722323!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;0.00165904983525566!GO:0006284;base-excision repair;0.00169661571960935!GO:0000159;protein phosphatase type 2A complex;0.00173474287317075!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.00177408624937781!GO:0043596;nuclear replication fork;0.00177431507405769!GO:0008652;amino acid biosynthetic process;0.00187209338595489!GO:0030036;actin cytoskeleton organization and biogenesis;0.00189430618330507!GO:0008601;protein phosphatase type 2A regulator activity;0.00195587792198503!GO:0016563;transcription activator activity;0.00200510786869921!GO:0006355;regulation of transcription, DNA-dependent;0.00202211209176427!GO:0048487;beta-tubulin binding;0.00203654396999565!GO:0005637;nuclear inner membrane;0.00203654396999565!GO:0005876;spindle microtubule;0.00205418277272688!GO:0004576;oligosaccharyl transferase activity;0.00223874759872661!GO:0016251;general RNA polymerase II transcription factor activity;0.00224409985369228!GO:0008287;protein serine/threonine phosphatase complex;0.00231077879969718!GO:0009116;nucleoside metabolic process;0.00241465016400562!GO:0000209;protein polyubiquitination;0.00245090725187721!GO:0030867;rough endoplasmic reticulum membrane;0.00246135124385855!GO:0003711;transcription elongation regulator activity;0.00247157368211378!GO:0048500;signal recognition particle;0.00265192082323637!GO:0031570;DNA integrity checkpoint;0.00265712238375775!GO:0030118;clathrin coat;0.00267719942375514!GO:0040029;regulation of gene expression, epigenetic;0.00270315890188136!GO:0000725;recombinational repair;0.00270315890188136!GO:0000724;double-strand break repair via homologous recombination;0.00270315890188136!GO:0000922;spindle pole;0.00292895670199368!GO:0009451;RNA modification;0.00293478161776066!GO:0045786;negative regulation of progression through cell cycle;0.00303430736526263!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.0030350963764538!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.0030350963764538!GO:0004518;nuclease activity;0.00304634943959724!GO:0048523;negative regulation of cellular process;0.00320820077708614!GO:0005758;mitochondrial intermembrane space;0.00321901679905593!GO:0000178;exosome (RNase complex);0.00323110925637823!GO:0006611;protein export from nucleus;0.00323110925637823!GO:0019843;rRNA binding;0.00328734884506561!GO:0006519;amino acid and derivative metabolic process;0.00333321090584598!GO:0031072;heat shock protein binding;0.00340445855760922!GO:0008312;7S RNA binding;0.00341050840429444!GO:0046483;heterocycle metabolic process;0.00341585617652615!GO:0005885;Arp2/3 protein complex;0.003450952790193!GO:0044454;nuclear chromosome part;0.00345703677205516!GO:0005669;transcription factor TFIID complex;0.00346885594918979!GO:0004674;protein serine/threonine kinase activity;0.00371416212389513!GO:0016564;transcription repressor activity;0.0037590433362493!GO:0043069;negative regulation of programmed cell death;0.00390462970839825!GO:0033116;ER-Golgi intermediate compartment membrane;0.00393290249988596!GO:0005741;mitochondrial outer membrane;0.00402369664586089!GO:0051539;4 iron, 4 sulfur cluster binding;0.00410246474773743!GO:0000792;heterochromatin;0.00417032685773033!GO:0042393;histone binding;0.00417212538345928!GO:0031577;spindle checkpoint;0.00419880017713452!GO:0005905;coated pit;0.00436349565686818!GO:0019783;small conjugating protein-specific protease activity;0.00439604460918962!GO:0030029;actin filament-based process;0.00445148362550296!GO:0016584;nucleosome positioning;0.00450450513809462!GO:0043488;regulation of mRNA stability;0.00450450513809462!GO:0043487;regulation of RNA stability;0.00450450513809462!GO:0008139;nuclear localization sequence binding;0.0045446507864927!GO:0016481;negative regulation of transcription;0.0045849630970415!GO:0008022;protein C-terminus binding;0.00463106323356331!GO:0043066;negative regulation of apoptosis;0.00471023137721028!GO:0035258;steroid hormone receptor binding;0.00476840396766191!GO:0004532;exoribonuclease activity;0.00476840396766191!GO:0016896;exoribonuclease activity, producing 5'-phosphomonoesters;0.00476840396766191!GO:0007004;telomere maintenance via telomerase;0.00489890168827959!GO:0016126;sterol biosynthetic process;0.0049522994465881!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.00496647270508349!GO:0046474;glycerophospholipid biosynthetic process;0.00511106079370444!GO:0016585;chromatin remodeling complex;0.00523850198481868!GO:0030119;AP-type membrane coat adaptor complex;0.00524302479463201!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.00534706407409253!GO:0043601;nuclear replisome;0.00536920522825265!GO:0030894;replisome;0.00536920522825265!GO:0000070;mitotic sister chromatid segregation;0.00542834531088479!GO:0004003;ATP-dependent DNA helicase activity;0.00542834531088479!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.00542834531088479!GO:0015002;heme-copper terminal oxidase activity;0.00542834531088479!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.00542834531088479!GO:0004129;cytochrome-c oxidase activity;0.00542834531088479!GO:0000781;chromosome, telomeric region;0.00556042572161203!GO:0005791;rough endoplasmic reticulum;0.00559396826824858!GO:0018196;peptidyl-asparagine modification;0.00566144190897308!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.00566144190897308!GO:0009303;rRNA transcription;0.00572698690376836!GO:0000339;RNA cap binding;0.00580265794125427!GO:0030521;androgen receptor signaling pathway;0.00580533924099848!GO:0000819;sister chromatid segregation;0.00594843810433776!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.00602302481202554!GO:0045047;protein targeting to ER;0.00602302481202554!GO:0006916;anti-apoptosis;0.00607448571322573!GO:0031970;organelle envelope lumen;0.00611277698735106!GO:0016891;endoribonuclease activity, producing 5'-phosphomonoesters;0.00628911331012768!GO:0006289;nucleotide-excision repair;0.00632048959268556!GO:0044262;cellular carbohydrate metabolic process;0.00637256997654482!GO:0006595;polyamine metabolic process;0.00637256997654482!GO:0030027;lamellipodium;0.00695019542435759!GO:0045045;secretory pathway;0.00703760861389223!GO:0051287;NAD binding;0.00705039575599535!GO:0004843;ubiquitin-specific protease activity;0.00714851129825037!GO:0007021;tubulin folding;0.00720963248679548!GO:0006378;mRNA polyadenylation;0.00738015915521167!GO:0030131;clathrin adaptor complex;0.00746623425690805!GO:0019899;enzyme binding;0.00751837846858112!GO:0043022;ribosome binding;0.00760974990412107!GO:0006007;glucose catabolic process;0.00761496670938763!GO:0006400;tRNA modification;0.00769049120446265!GO:0031968;organelle outer membrane;0.00769049120446265!GO:0008276;protein methyltransferase activity;0.00771557533278952!GO:0005832;chaperonin-containing T-complex;0.00775787150083303!GO:0065007;biological regulation;0.00778767560477018!GO:0000096;sulfur amino acid metabolic process;0.00778767560477018!GO:0000079;regulation of cyclin-dependent protein kinase activity;0.0080408913463547!GO:0030658;transport vesicle membrane;0.00809798372177019!GO:0046467;membrane lipid biosynthetic process;0.00845428482999535!GO:0031124;mRNA 3'-end processing;0.00853831844556123!GO:0004221;ubiquitin thiolesterase activity;0.00896356120760131!GO:0042770;DNA damage response, signal transduction;0.00905889239163175!GO:0006278;RNA-dependent DNA replication;0.00952727992284345!GO:0003746;translation elongation factor activity;0.00958784749862228!GO:0005938;cell cortex;0.00971613161773876!GO:0006220;pyrimidine nucleotide metabolic process;0.0103865081175506!GO:0006790;sulfur metabolic process;0.0106091052971967!GO:0000077;DNA damage checkpoint;0.0106091052971967!GO:0019867;outer membrane;0.0106091052971967!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.0106961294262838!GO:0003714;transcription corepressor activity;0.0109220149207392!GO:0009081;branched chain family amino acid metabolic process;0.0110381705899592!GO:0008408;3'-5' exonuclease activity;0.0111357760644303!GO:0008017;microtubule binding;0.0111985210474638!GO:0008180;signalosome;0.0115008752681992!GO:0044450;microtubule organizing center part;0.0115525752489468!GO:0005663;DNA replication factor C complex;0.0116854019956423!GO:0051540;metal cluster binding;0.0120071134433686!GO:0051536;iron-sulfur cluster binding;0.0120071134433686!GO:0000910;cytokinesis;0.0121531799551758!GO:0007094;mitotic cell cycle spindle assembly checkpoint;0.0122183084308548!GO:0051053;negative regulation of DNA metabolic process;0.0122778115888358!GO:0006376;mRNA splice site selection;0.0128267496028541!GO:0000389;nuclear mRNA 3'-splice site recognition;0.0128267496028541!GO:0007007;inner mitochondrial membrane organization and biogenesis;0.0128267496028541!GO:0019752;carboxylic acid metabolic process;0.0129741524475346!GO:0016407;acetyltransferase activity;0.0129826221236174!GO:0006891;intra-Golgi vesicle-mediated transport;0.0131586947448059!GO:0050662;coenzyme binding;0.0132407412882408!GO:0001726;ruffle;0.0135505254511779!GO:0005862;muscle thin filament tropomyosin;0.0139813933250414!GO:0030134;ER to Golgi transport vesicle;0.0139813933250414!GO:0042981;regulation of apoptosis;0.0140317478905848!GO:0016790;thiolester hydrolase activity;0.014033828007757!GO:0006082;organic acid metabolic process;0.014357327963688!GO:0030145;manganese ion binding;0.0145857866937003!GO:0043067;regulation of programmed cell death;0.0146406823057359!GO:0016893;endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters;0.014642296066398!GO:0030663;COPI coated vesicle membrane;0.014642296066398!GO:0030126;COPI vesicle coat;0.014642296066398!GO:0000726;non-recombinational repair;0.0147960571739352!GO:0006695;cholesterol biosynthetic process;0.0148417769223295!GO:0030660;Golgi-associated vesicle membrane;0.015364151936041!GO:0030496;midbody;0.0157168389189784!GO:0051789;response to protein stimulus;0.016140335147963!GO:0006986;response to unfolded protein;0.016140335147963!GO:0045947;negative regulation of translational initiation;0.0172358894028114!GO:0000793;condensed chromosome;0.0175346271148383!GO:0019205;nucleobase, nucleoside, nucleotide kinase activity;0.0179189299003886!GO:0005665;DNA-directed RNA polymerase II, core complex;0.0179411241492171!GO:0000082;G1/S transition of mitotic cell cycle;0.0184033029293031!GO:0005666;DNA-directed RNA polymerase III complex;0.0191171493041524!GO:0016796;exonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters;0.019402659799244!GO:0009064;glutamine family amino acid metabolic process;0.0195833933885908!GO:0050178;phenylpyruvate tautomerase activity;0.0198106689495407!GO:0000307;cyclin-dependent protein kinase holoenzyme complex;0.0204066730240841!GO:0046966;thyroid hormone receptor binding;0.0205560506984141!GO:0030133;transport vesicle;0.0205781682541858!GO:0006650;glycerophospholipid metabolic process;0.0206428412810188!GO:0043284;biopolymer biosynthetic process;0.0206690472267616!GO:0001725;stress fiber;0.0216931453779778!GO:0032432;actin filament bundle;0.0216931453779778!GO:0051656;establishment of organelle localization;0.0217179448164937!GO:0046489;phosphoinositide biosynthetic process;0.0219084891970343!GO:0016491;oxidoreductase activity;0.0221766217374995!GO:0006607;NLS-bearing substrate import into nucleus;0.0223545767745433!GO:0017166;vinculin binding;0.022749310337445!GO:0043624;cellular protein complex disassembly;0.022749310337445!GO:0016884;carbon-nitrogen ligase activity, with glutamine as amido-N-donor;0.0228079609445523!GO:0016835;carbon-oxygen lyase activity;0.0229351283114541!GO:0030518;steroid hormone receptor signaling pathway;0.0230670601599253!GO:0030176;integral to endoplasmic reticulum membrane;0.0231622891437321!GO:0005875;microtubule associated complex;0.0234580919653383!GO:0015992;proton transport;0.0234891607531528!GO:0005652;nuclear lamina;0.0237974742193944!GO:0032984;macromolecular complex disassembly;0.0238546034232674!GO:0000097;sulfur amino acid biosynthetic process;0.0238760621307177!GO:0008097;5S rRNA binding;0.0241622630762902!GO:0005853;eukaryotic translation elongation factor 1 complex;0.0245184164472056!GO:0006818;hydrogen transport;0.0247335162845642!GO:0030127;COPII vesicle coat;0.0250558725902898!GO:0012507;ER to Golgi transport vesicle membrane;0.0250558725902898!GO:0048519;negative regulation of biological process;0.0252504656140123!GO:0009119;ribonucleoside metabolic process;0.0252504656140123!GO:0035267;NuA4 histone acetyltransferase complex;0.0252504656140123!GO:0031123;RNA 3'-end processing;0.0255408475881629!GO:0009113;purine base biosynthetic process;0.0256764694816204!GO:0016301;kinase activity;0.0261575484998175!GO:0046365;monosaccharide catabolic process;0.0261722394482358!GO:0042719;mitochondrial intermembrane space protein transporter complex;0.0262459496359602!GO:0045039;protein import into mitochondrial inner membrane;0.0262459496359602!GO:0008632;apoptotic program;0.0270865366911731!GO:0000123;histone acetyltransferase complex;0.0276881169378394!GO:0016311;dephosphorylation;0.027713181581682!GO:0032981;mitochondrial respiratory chain complex I assembly;0.0279733168585827!GO:0010257;NADH dehydrogenase complex assembly;0.0279733168585827!GO:0033108;mitochondrial respiratory chain complex assembly;0.0279733168585827!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.0279881389276303!GO:0015399;primary active transmembrane transporter activity;0.0279881389276303!GO:0000175;3'-5'-exoribonuclease activity;0.0282693496070462!GO:0006096;glycolysis;0.0283594667201927!GO:0008538;proteasome activator activity;0.0286921064002067!GO:0000118;histone deacetylase complex;0.0289992292536148!GO:0030330;DNA damage response, signal transduction by p53 class mediator;0.0289998304111617!GO:0030320;cellular monovalent inorganic anion homeostasis;0.0293091822234782!GO:0055083;monovalent inorganic anion homeostasis;0.0293091822234782!GO:0055064;chloride ion homeostasis;0.0293091822234782!GO:0030644;cellular chloride ion homeostasis;0.0293091822234782!GO:0006091;generation of precursor metabolites and energy;0.029918893080708!GO:0001824;blastocyst development;0.030138237453956!GO:0005744;mitochondrial inner membrane presequence translocase complex;0.0303986431576216!GO:0000790;nuclear chromatin;0.030423625763389!GO:0005850;eukaryotic translation initiation factor 2 complex;0.0304593482280238!GO:0003887;DNA-directed DNA polymerase activity;0.0304912932929296!GO:0043631;RNA polyadenylation;0.0307721582265255!GO:0031371;ubiquitin conjugating enzyme complex;0.0308774320381658!GO:0045892;negative regulation of transcription, DNA-dependent;0.0311894099426662!GO:0030137;COPI-coated vesicle;0.0316507705223412!GO:0030384;phosphoinositide metabolic process;0.0317481492990838!GO:0004722;protein serine/threonine phosphatase activity;0.0318401173297068!GO:0009124;nucleoside monophosphate biosynthetic process;0.0318401173297068!GO:0009123;nucleoside monophosphate metabolic process;0.0318401173297068!GO:0005658;alpha DNA polymerase:primase complex;0.0322269427384831!GO:0017134;fibroblast growth factor binding;0.0324608583163806!GO:0046128;purine ribonucleoside metabolic process;0.0325404187704207!GO:0042278;purine nucleoside metabolic process;0.0325404187704207!GO:0005784;translocon complex;0.0326880633529262!GO:0042769;DNA damage response, detection of DNA damage;0.032867955149209!GO:0005996;monosaccharide metabolic process;0.0330068800706993!GO:0000152;nuclear ubiquitin ligase complex;0.0333155993136147!GO:0004523;ribonuclease H activity;0.0335627900390918!GO:0008143;poly(A) binding;0.0337832542557698!GO:0022890;inorganic cation transmembrane transporter activity;0.0339211845778319!GO:0005732;small nucleolar ribonucleoprotein complex;0.0340916189060853!GO:0030132;clathrin coat of coated pit;0.0342939550131603!GO:0006367;transcription initiation from RNA polymerase II promoter;0.0342939550131603!GO:0022884;macromolecule transmembrane transporter activity;0.0345764243378391!GO:0015450;P-P-bond-hydrolysis-driven protein transmembrane transporter activity;0.0345764243378391!GO:0007018;microtubule-based movement;0.0348801992663321!GO:0003756;protein disulfide isomerase activity;0.0349410844505359!GO:0016864;intramolecular oxidoreductase activity, transposing S-S bonds;0.0349410844505359!GO:0004540;ribonuclease activity;0.0350822767373746!GO:0022411;cellular component disassembly;0.0362289506190875!GO:0046112;nucleobase biosynthetic process;0.0362701252793027!GO:0030659;cytoplasmic vesicle membrane;0.0365315707803486!GO:0043189;H4/H2A histone acetyltransferase complex;0.0366815625525969!GO:0008270;zinc ion binding;0.0369421305841406!GO:0008156;negative regulation of DNA replication;0.0375562253672852!GO:0033170;DNA-protein loading ATPase activity;0.0376863204834584!GO:0003689;DNA clamp loader activity;0.0376863204834584!GO:0009066;aspartate family amino acid metabolic process;0.0377724848077343!GO:0006417;regulation of translation;0.0383301807763012!GO:0009308;amine metabolic process;0.0383791747450183!GO:0008320;protein transmembrane transporter activity;0.0385476583940386!GO:0001522;pseudouridine synthesis;0.0385646357319072!GO:0043241;protein complex disassembly;0.0391939711055396!GO:0012506;vesicle membrane;0.0396755557583811!GO:0019320;hexose catabolic process;0.039863790254513!GO:0006406;mRNA export from nucleus;0.0399849152222375!GO:0007040;lysosome organization and biogenesis;0.040285235633492!GO:0006189;'de novo' IMP biosynthetic process;0.0407003226404029!GO:0006188;IMP biosynthetic process;0.0407003226404029!GO:0046040;IMP metabolic process;0.0407003226404029!GO:0016044;membrane organization and biogenesis;0.0413378905690471!GO:0006740;NADPH regeneration;0.0427353458919274!GO:0006098;pentose-phosphate shunt;0.0427353458919274!GO:0043130;ubiquitin binding;0.0427954259762458!GO:0032182;small conjugating protein binding;0.0427954259762458!GO:0004239;methionyl aminopeptidase activity;0.0431713739299738!GO:0046426;negative regulation of JAK-STAT cascade;0.0441929881719634!GO:0016791;phosphoric monoester hydrolase activity;0.0441929881719634!GO:0048037;cofactor binding;0.0442260259224512!GO:0031625;ubiquitin protein ligase binding;0.0442260259224512!GO:0006610;ribosomal protein import into nucleus;0.0445370157240929!GO:0001843;neural tube closure;0.0446643725030901!GO:0014020;primary neural tube formation;0.0446643725030901!GO:0019904;protein domain specific binding;0.0448422927687605!GO:0019318;hexose metabolic process;0.0450053400291716!GO:0016836;hydro-lyase activity;0.0458975714996209!GO:0006733;oxidoreduction coenzyme metabolic process;0.0464454097985193!GO:0050749;apolipoprotein E receptor binding;0.0467247613441733!GO:0009161;ribonucleoside monophosphate metabolic process;0.0470444862110978!GO:0009156;ribonucleoside monophosphate biosynthetic process;0.0470444862110978!GO:0006356;regulation of transcription from RNA polymerase I promoter;0.0471652134040164!GO:0045815;positive regulation of gene expression, epigenetic;0.0471652134040164!GO:0000062;acyl-CoA binding;0.047335266921307!GO:0044433;cytoplasmic vesicle part;0.0476159454919916!GO:0005844;polysome;0.0499004868678105!GO:0008234;cysteine-type peptidase activity;0.0499153007049856 | |||
|sample_id=12822 | |sample_id=12822 | ||
|sample_note= | |sample_note= | ||
| Line 75: | Line 98: | ||
|sample_strain= | |sample_strain= | ||
|sample_tissue=unclassifiable | |sample_tissue=unclassifiable | ||
|timecourse=Melanocytic_differentiation | |||
|top_motifs=OCT4_SOX2{dimer}:2.91492593832;PATZ1:1.84122359712;NANOG:1.80688414608;E2F1..5:1.79188900706;NFY{A,B,C}:1.71512137961;SP1:1.66939253708;SNAI1..3:1.58617313854;SOX{8,9,10}:1.56166671111;TFDP1:1.53820582719;PBX1:1.45120052957;CUX2:1.43666350523;RBPJ:1.40416206376;GFI1:1.37308395121;XCPE1{core}:1.33772979006;POU2F1..3:1.28774056574;LEF1_TCF7_TCF7L1,2:1.23309707367;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:1.22678905073;ZNF143:1.19175166348;SOX17:1.12742715936;ZEB1:1.12337911659;SOX2:1.09540168773;RORA:1.08363555758;MYOD1:1.02444324128;PAX1,9:1.00981233099;VSX1,2:1.00388588084;MZF1:0.998881693877;T:0.995727873183;NRF1:0.984982297549;EBF1:0.964874305835;ZIC1..3:0.943975490222;YY1:0.914611180662;LMO2:0.834169361626;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.795857151979;MYB:0.789322082194;MAZ:0.781048533627;RREB1:0.746914614131;NKX2-3_NKX2-5:0.745134232783;EN1,2:0.742012798244;bHLH_family:0.718961619292;POU5F1:0.704014233285;ESRRA:0.701105422227;ALX1:0.688044121372;FOXM1:0.67742207211;ONECUT1,2:0.645112053991;BREu{core}:0.629280702459;STAT5{A,B}:0.62022404385;CDC5L:0.605379868681;ELK1,4_GABP{A,B1}:0.575413311968;HOX{A4,D4}:0.564454393339;STAT1,3:0.561282374705;ZFP161:0.560649606401;AIRE:0.53826631603;POU3F1..4:0.451164908661;CRX:0.430154790317;ATF4:0.403258840132;ADNP_IRX_SIX_ZHX:0.396379224698;EVI1:0.39066305929;TOPORS:0.382815959878;ZNF384:0.380289762161;FOXN1:0.364908625527;IKZF2:0.304913700529;KLF4:0.292187678643;HOX{A5,B5}:0.283355236068;PRRX1,2:0.281037269149;PAX5:0.2328958605;HAND1,2:0.232636521639;TFAP2B:0.194559977309;HIC1:0.188021062813;FOXD3:0.17649928009;ARID5B:0.174001160007;GTF2I:0.138870426338;FOXA2:0.137474527443;CDX1,2,4:0.131801050816;HNF4A_NR2F1,2:0.1123440508;TP53:0.0982531068087;FOX{I1,J2}:0.0900983834121;REST:0.0846351681786;ZBTB6:0.0809674340534;GATA6:0.0713923456221;POU6F1:0.0665814672587;SREBF1,2:0.0639028622074;EGR1..3:0.0522352027531;LHX3,4:0.0334578349014;GCM1,2:0.00396272464938;HNF1A:-0.016442295307;TBX4,5:-0.0584337636679;NHLH1,2:-0.0739143237615;PRDM1:-0.0783423983706;NANOG{mouse}:-0.0917841382165;FOXQ1:-0.0996069677918;RXR{A,B,G}:-0.117196097224;NR5A1,2:-0.146666140294;TBP:-0.147725532717;MTE{core}:-0.163703023328;UFEwm:-0.181700676235;HOX{A6,A7,B6,B7}:-0.186304220281;IKZF1:-0.194079144038;RFX1:-0.197123065766;GFI1B:-0.199441331725;CREB1:-0.213337645825;PITX1..3:-0.237802036042;ESR1:-0.243235938835;HIF1A:-0.256323582863;ZBTB16:-0.256581408608;MYFfamily:-0.282376252305;TEAD1:-0.282766988871;MED-1{core}:-0.30586198246;MTF1:-0.315150362692;MYBL2:-0.332031297777;PAX8:-0.339599785654;NR3C1:-0.34597647418;NFKB1_REL_RELA:-0.352221804446;ATF5_CREB3:-0.385313073613;NR1H4:-0.386344200641;JUN:-0.386808895727;ATF2:-0.389586540194;FOX{F1,F2,J1}:-0.390502112465;XBP1:-0.399198344539;NFE2L2:-0.405101788336;PAX4:-0.409039196052;SOX5:-0.420817969178;GTF2A1,2:-0.433928062115;ZNF423:-0.435199702226;TEF:-0.457377750509;MEF2{A,B,C,D}:-0.47724677945;NKX2-2,8:-0.487320707459;GATA4:-0.502649489008;HSF1,2:-0.510882577073;NKX6-1,2:-0.512112769511;NKX3-2:-0.513337540424;PAX2:-0.513922778429;FOXP1:-0.51501653259;POU1F1:-0.528349717254;FOXP3:-0.534961971787;AHR_ARNT_ARNT2:-0.549725188874;NFE2:-0.551302559948;ZNF148:-0.552481667499;PAX3,7:-0.562609345566;RXRA_VDR{dimer}:-0.5666537364;AR:-0.570410209562;HLF:-0.572592428444;BACH2:-0.587840662624;FOSL2:-0.598583313946;HMGA1,2:-0.622985036726;FOS_FOS{B,L1}_JUN{B,D}:-0.632636751922;SRF:-0.64582599746;RUNX1..3:-0.64798763479;PPARG:-0.666431179909;DMAP1_NCOR{1,2}_SMARC:-0.687809645805;NKX2-1,4:-0.690195713382;SPIB:-0.690516063696;SPI1:-0.692403677986;RFX2..5_RFXANK_RFXAP:-0.697996736659;TFAP2{A,C}:-0.727030536574;HBP1_HMGB_SSRP1_UBTF:-0.754576588163;NKX3-1:-0.762553279775;FOX{D1,D2}:-0.802704450783;FOXO1,3,4:-0.812666294484;ELF1,2,4:-0.823721909852;TFAP4:-0.84513702862;HMX1:-0.890801795811;FOXL1:-0.920493142176;ALX4:-0.927660079845;CEBPA,B_DDIT3:-0.929044238262;BPTF:-0.939299633311;HES1:-0.958056680955;SPZ1:-0.958630693562;ETS1,2:-0.982432861693;NFATC1..3:-0.984868411142;IRF7:-0.99974868577;NFIX:-1.0079611919;NFE2L1:-1.0355009328;DBP:-1.04353518792;TAL1_TCF{3,4,12}:-1.04523272449;TFCP2:-1.04620967626;PAX6:-1.04656003644;NFIL3:-1.05959191907;HOXA9_MEIS1:-1.08363490521;NR6A1:-1.08656924877;ZNF238:-1.11185869729;IRF1,2:-1.17712510189;TLX1..3_NFIC{dimer}:-1.22402687886;TGIF1:-1.27366280436;PDX1:-1.2908126807;GLI1..3:-1.32080405948;GZF1:-1.35946424414;TLX2:-1.37381850624;EP300:-1.40400517453;STAT2,4,6:-1.62841360924;MAFB:-1.73271915509;ATF6:-1.78602876133;SMAD1..7,9:-2.0378695723 | |top_motifs=OCT4_SOX2{dimer}:2.91492593832;PATZ1:1.84122359712;NANOG:1.80688414608;E2F1..5:1.79188900706;NFY{A,B,C}:1.71512137961;SP1:1.66939253708;SNAI1..3:1.58617313854;SOX{8,9,10}:1.56166671111;TFDP1:1.53820582719;PBX1:1.45120052957;CUX2:1.43666350523;RBPJ:1.40416206376;GFI1:1.37308395121;XCPE1{core}:1.33772979006;POU2F1..3:1.28774056574;LEF1_TCF7_TCF7L1,2:1.23309707367;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:1.22678905073;ZNF143:1.19175166348;SOX17:1.12742715936;ZEB1:1.12337911659;SOX2:1.09540168773;RORA:1.08363555758;MYOD1:1.02444324128;PAX1,9:1.00981233099;VSX1,2:1.00388588084;MZF1:0.998881693877;T:0.995727873183;NRF1:0.984982297549;EBF1:0.964874305835;ZIC1..3:0.943975490222;YY1:0.914611180662;LMO2:0.834169361626;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.795857151979;MYB:0.789322082194;MAZ:0.781048533627;RREB1:0.746914614131;NKX2-3_NKX2-5:0.745134232783;EN1,2:0.742012798244;bHLH_family:0.718961619292;POU5F1:0.704014233285;ESRRA:0.701105422227;ALX1:0.688044121372;FOXM1:0.67742207211;ONECUT1,2:0.645112053991;BREu{core}:0.629280702459;STAT5{A,B}:0.62022404385;CDC5L:0.605379868681;ELK1,4_GABP{A,B1}:0.575413311968;HOX{A4,D4}:0.564454393339;STAT1,3:0.561282374705;ZFP161:0.560649606401;AIRE:0.53826631603;POU3F1..4:0.451164908661;CRX:0.430154790317;ATF4:0.403258840132;ADNP_IRX_SIX_ZHX:0.396379224698;EVI1:0.39066305929;TOPORS:0.382815959878;ZNF384:0.380289762161;FOXN1:0.364908625527;IKZF2:0.304913700529;KLF4:0.292187678643;HOX{A5,B5}:0.283355236068;PRRX1,2:0.281037269149;PAX5:0.2328958605;HAND1,2:0.232636521639;TFAP2B:0.194559977309;HIC1:0.188021062813;FOXD3:0.17649928009;ARID5B:0.174001160007;GTF2I:0.138870426338;FOXA2:0.137474527443;CDX1,2,4:0.131801050816;HNF4A_NR2F1,2:0.1123440508;TP53:0.0982531068087;FOX{I1,J2}:0.0900983834121;REST:0.0846351681786;ZBTB6:0.0809674340534;GATA6:0.0713923456221;POU6F1:0.0665814672587;SREBF1,2:0.0639028622074;EGR1..3:0.0522352027531;LHX3,4:0.0334578349014;GCM1,2:0.00396272464938;HNF1A:-0.016442295307;TBX4,5:-0.0584337636679;NHLH1,2:-0.0739143237615;PRDM1:-0.0783423983706;NANOG{mouse}:-0.0917841382165;FOXQ1:-0.0996069677918;RXR{A,B,G}:-0.117196097224;NR5A1,2:-0.146666140294;TBP:-0.147725532717;MTE{core}:-0.163703023328;UFEwm:-0.181700676235;HOX{A6,A7,B6,B7}:-0.186304220281;IKZF1:-0.194079144038;RFX1:-0.197123065766;GFI1B:-0.199441331725;CREB1:-0.213337645825;PITX1..3:-0.237802036042;ESR1:-0.243235938835;HIF1A:-0.256323582863;ZBTB16:-0.256581408608;MYFfamily:-0.282376252305;TEAD1:-0.282766988871;MED-1{core}:-0.30586198246;MTF1:-0.315150362692;MYBL2:-0.332031297777;PAX8:-0.339599785654;NR3C1:-0.34597647418;NFKB1_REL_RELA:-0.352221804446;ATF5_CREB3:-0.385313073613;NR1H4:-0.386344200641;JUN:-0.386808895727;ATF2:-0.389586540194;FOX{F1,F2,J1}:-0.390502112465;XBP1:-0.399198344539;NFE2L2:-0.405101788336;PAX4:-0.409039196052;SOX5:-0.420817969178;GTF2A1,2:-0.433928062115;ZNF423:-0.435199702226;TEF:-0.457377750509;MEF2{A,B,C,D}:-0.47724677945;NKX2-2,8:-0.487320707459;GATA4:-0.502649489008;HSF1,2:-0.510882577073;NKX6-1,2:-0.512112769511;NKX3-2:-0.513337540424;PAX2:-0.513922778429;FOXP1:-0.51501653259;POU1F1:-0.528349717254;FOXP3:-0.534961971787;AHR_ARNT_ARNT2:-0.549725188874;NFE2:-0.551302559948;ZNF148:-0.552481667499;PAX3,7:-0.562609345566;RXRA_VDR{dimer}:-0.5666537364;AR:-0.570410209562;HLF:-0.572592428444;BACH2:-0.587840662624;FOSL2:-0.598583313946;HMGA1,2:-0.622985036726;FOS_FOS{B,L1}_JUN{B,D}:-0.632636751922;SRF:-0.64582599746;RUNX1..3:-0.64798763479;PPARG:-0.666431179909;DMAP1_NCOR{1,2}_SMARC:-0.687809645805;NKX2-1,4:-0.690195713382;SPIB:-0.690516063696;SPI1:-0.692403677986;RFX2..5_RFXANK_RFXAP:-0.697996736659;TFAP2{A,C}:-0.727030536574;HBP1_HMGB_SSRP1_UBTF:-0.754576588163;NKX3-1:-0.762553279775;FOX{D1,D2}:-0.802704450783;FOXO1,3,4:-0.812666294484;ELF1,2,4:-0.823721909852;TFAP4:-0.84513702862;HMX1:-0.890801795811;FOXL1:-0.920493142176;ALX4:-0.927660079845;CEBPA,B_DDIT3:-0.929044238262;BPTF:-0.939299633311;HES1:-0.958056680955;SPZ1:-0.958630693562;ETS1,2:-0.982432861693;NFATC1..3:-0.984868411142;IRF7:-0.99974868577;NFIX:-1.0079611919;NFE2L1:-1.0355009328;DBP:-1.04353518792;TAL1_TCF{3,4,12}:-1.04523272449;TFCP2:-1.04620967626;PAX6:-1.04656003644;NFIL3:-1.05959191907;HOXA9_MEIS1:-1.08363490521;NR6A1:-1.08656924877;ZNF238:-1.11185869729;IRF1,2:-1.17712510189;TLX1..3_NFIC{dimer}:-1.22402687886;TGIF1:-1.27366280436;PDX1:-1.2908126807;GLI1..3:-1.32080405948;GZF1:-1.35946424414;TLX2:-1.37381850624;EP300:-1.40400517453;STAT2,4,6:-1.62841360924;MAFB:-1.73271915509;ATF6:-1.78602876133;SMAD1..7,9:-2.0378695723 | ||
|xref= | |||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:12822-136I5;search_select_hide=table117:FF:12822-136I5 | |||
}} | }} | ||
Latest revision as of 18:45, 4 June 2020
| Name: | H9 Embryonic Stem cells, biol_rep3 (H9ES-3) |
|---|---|
| Species: | Human (Homo sapiens) |
| Library ID: | CNhs12837 |
| Sample type: | time courses |
| Genomic View: | UCSC |
| RefEX: | Specific genes |
| FANTOM CAT: | 1, 2 |
| CAGEd-oPOSSUM: | link |
| ZENBU report : | link |
| Additional information | ||||||||||||||||||||||||||||
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Sample information
RNA information
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs12837
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs12837
| Novel motif | Logo | P-value |
|---|---|---|
| 1 | 1 | 0.0914 |
| 10 | 10 | 0.0237 |
| 100 | 100 | 0.909 |
| 101 | 101 | 0.232 |
| 102 | 102 | 0.709 |
| 103 | 103 | 0.216 |
| 104 | 104 | 0.583 |
| 105 | 105 | 0.202 |
| 106 | 106 | 0.0158 |
| 107 | 107 | 0.25 |
| 108 | 108 | 0.653 |
| 109 | 109 | 0.377 |
| 11 | 11 | 0.11 |
| 110 | 110 | 0.256 |
| 111 | 111 | 0.0181 |
| 112 | 112 | 0.221 |
| 113 | 113 | 0.0426 |
| 114 | 114 | 0.0189 |
| 115 | 115 | 0.522 |
| 116 | 116 | 0.959 |
| 117 | 117 | 0.235 |
| 118 | 118 | 0.618 |
| 119 | 119 | 0.141 |
| 12 | 12 | 0.973 |
| 120 | 120 | 0.976 |
| 121 | 121 | 0.991 |
| 122 | 122 | 0.65 |
| 123 | 123 | 0.0948 |
| 124 | 124 | 0.132 |
| 125 | 125 | 0.815 |
| 126 | 126 | 0.673 |
| 127 | 127 | 0.719 |
| 128 | 128 | 0.43 |
| 129 | 129 | 0.378 |
| 13 | 13 | 0.605 |
| 130 | 130 | 0.0648 |
| 131 | 131 | 0.583 |
| 132 | 132 | 0.667 |
| 133 | 133 | 0.0261 |
| 134 | 134 | 0.557 |
| 135 | 135 | 0.0256 |
| 136 | 136 | 0.2 |
| 137 | 137 | 0.355 |
| 138 | 138 | 0.248 |
| 139 | 139 | 0.00955 |
| 14 | 14 | 0.636 |
| 140 | 140 | 0.149 |
| 141 | 141 | 0.819 |
| 142 | 142 | 0.534 |
| 143 | 143 | 0.0086 |
| 144 | 144 | 0.494 |
| 145 | 145 | 0.386 |
| 146 | 146 | 0.413 |
| 147 | 147 | 0.676 |
| 148 | 148 | 6.60288e-4 |
| 149 | 149 | 0.0099 |
| 15 | 15 | 0.0768 |
| 150 | 150 | 0.616 |
| 151 | 151 | 0.0808 |
| 152 | 152 | 0.367 |
| 153 | 153 | 0.235 |
| 154 | 154 | 0.198 |
| 155 | 155 | 0.815 |
| 156 | 156 | 0.795 |
| 157 | 157 | 0.962 |
| 158 | 158 | 0.447 |
| 159 | 159 | 0.499 |
| 16 | 16 | 0.274 |
| 160 | 160 | 0.246 |
| 161 | 161 | 0.886 |
| 162 | 162 | 0.62 |
| 163 | 163 | 0.472 |
| 164 | 164 | 0.212 |
| 165 | 165 | 0.267 |
| 166 | 166 | 0.705 |
| 167 | 167 | 0.0466 |
| 168 | 168 | 0.232 |
| 169 | 169 | 5.12032e-4 |
| 17 | 17 | 0.223 |
| 18 | 18 | 0.255 |
| 19 | 19 | 0.103 |
| 2 | 2 | 0.543 |
| 20 | 20 | 0.935 |
| 21 | 21 | 0.41 |
| 22 | 22 | 0.186 |
| 23 | 23 | 0.00971 |
| 24 | 24 | 0.822 |
| 25 | 25 | 0.399 |
| 26 | 26 | 0.212 |
| 27 | 27 | 0.445 |
| 28 | 28 | 0.842 |
| 29 | 29 | 0.771 |
| 3 | 3 | 0.0789 |
| 30 | 30 | 0.886 |
| 31 | 31 | 0.864 |
| 32 | 32 | 0.0254 |
| 33 | 33 | 0.804 |
| 34 | 34 | 0.81 |
| 35 | 35 | 0.313 |
| 36 | 36 | 0.0585 |
| 37 | 37 | 0.238 |
| 38 | 38 | 0.279 |
| 39 | 39 | 0.506 |
| 4 | 4 | 0.99 |
| 40 | 40 | 0.704 |
| 41 | 41 | 0.192 |
| 42 | 42 | 0.241 |
| 43 | 43 | 0.111 |
| 44 | 44 | 0.901 |
| 45 | 45 | 0.699 |
| 46 | 46 | 0.0554 |
| 47 | 47 | 0.575 |
| 48 | 48 | 0.395 |
| 49 | 49 | 0.0841 |
| 5 | 5 | 0.0875 |
| 50 | 50 | 0.874 |
| 51 | 51 | 0.761 |
| 52 | 52 | 0.43 |
| 53 | 53 | 0.184 |
| 54 | 54 | 0.364 |
| 55 | 55 | 0.0497 |
| 56 | 56 | 0.619 |
| 57 | 57 | 0.386 |
| 58 | 58 | 0.0789 |
| 59 | 59 | 0.229 |
| 6 | 6 | 0.676 |
| 60 | 60 | 0.0776 |
| 61 | 61 | 0.903 |
| 62 | 62 | 0.0278 |
| 63 | 63 | 0.105 |
| 64 | 64 | 0.256 |
| 65 | 65 | 0.0752 |
| 66 | 66 | 0.424 |
| 67 | 67 | 0.182 |
| 68 | 68 | 0.824 |
| 69 | 69 | 0.883 |
| 7 | 7 | 0.393 |
| 70 | 70 | 0.00848 |
| 71 | 71 | 0.0353 |
| 72 | 72 | 0.532 |
| 73 | 73 | 0.115 |
| 74 | 74 | 0.265 |
| 75 | 75 | 0.221 |
| 76 | 76 | 0.405 |
| 77 | 77 | 0.251 |
| 78 | 78 | 0.454 |
| 79 | 79 | 0.0857 |
| 8 | 8 | 0.12 |
| 80 | 80 | 0.156 |
| 81 | 81 | 0.224 |
| 82 | 82 | 0.0301 |
| 83 | 83 | 0.88 |
| 84 | 84 | 0.816 |
| 85 | 85 | 0.0216 |
| 86 | 86 | 0.534 |
| 87 | 87 | 0.262 |
| 88 | 88 | 0.549 |
| 89 | 89 | 0.132 |
| 9 | 9 | 0.219 |
| 90 | 90 | 0.24 |
| 91 | 91 | 0.15 |
| 92 | 92 | 0.0314 |
| 93 | 93 | 0.528 |
| 94 | 94 | 0.0531 |
| 95 | 95 | 0.848 |
| 96 | 96 | 0.0361 |
| 97 | 97 | 0.719 |
| 98 | 98 | 0.305 |
| 99 | 99 | 0.622 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs12837
FANTOM5 (FF) ontology
Direct parent terms
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0002321 (embryonic cell)
0000255 (eukaryotic cell)
0000034 (stem cell)
0002322 (embryonic stem cell)
UBERON: Anatomy
0000468 (multi-cellular organism)
0000922 (embryo)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0001062 (anatomical entity)
FF: FANTOM5
0000102 (sample by type)
0000003 (cell line sample)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0101581 (embryonic stem cell line sample)
0000343 (control treatment sample)
0000350 (experimentally modified sample)
0000400 (H9 embryonic stem cell line sample)
0100669 (embryonic cell line sample)
0000592 (human H9 Embryonic Stem cells sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
NA
