FF:14302-155B9: Difference between revisions

Latest revision as of 19:05, 4 June 2020

Name:	Fibroblast - skin normal, donor2 (nuclear fraction)
Species:	Human (Homo sapiens)
Library ID:	CNhs12582
Sample type:	fractionations and perturbations
Genomic View:	UCSC
RefEX:	Specific genes
CAGEd-oPOSSUM:	link
ZENBU report :	link

Additional information

Sample information

strain	NA
tissue	skin
dev stage	NA
sex	M
age	3 year old child
cell type	fibroblast
cell line	NA
company	Coriell
collaboration	FANTOM5 OSC CORE (contact: Al Forrest)
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	NA
catalog number	custom
sample type	total RNA
extraction protocol (Details)	OP-RNA-extraction-totalRNA-TRIzol-ethanol-v1.0

CAGE Accession numbers

Method		Sample accession id
CAGE		SAMD00005582

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs12582		CAGE		DRX008038		DRR008910

Accession ID Hg19

Library id		BAM		CTSS
CNhs12582		DRZ000335		DRZ001720

Accession ID Hg38

Library id		BAM		CTSS
CNhs12582		DRZ011685		DRZ013070

Download raw sequence, BAM & CTSS

Hg19

Fasta	BAM	CTSS
download	download	donwload

Hg38

BAM	CTSS
download	donwload

RNA-Seq Accession numbers

Method		Sample accession id
sRNA-Seq		SAMD00005582

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
SRhi10009.ACAGTG		sRNA-Seq		DRX036983		DRR041349

Accession ID Hg19

Library id		BAM		CTSS
SRhi10009.ACAGTG		DRZ006991

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

Coexpression cluster	score
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral	0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate	0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural	0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial	0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel	0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS	0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils	0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural	0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis	0.231
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy	0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood	0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate	0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma	0.592
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial	0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic	0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat	0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal	0
C113-thyroid-throat-lung-lymph-small-colon-trachea	0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma	0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus	0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea	0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal	0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula	0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD19	0.0677
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils	0
C120-immature-salivary-tongue-skin-cervical-CD14-CD34	0
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B	0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal	0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils	0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte	0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus	0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain	0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil	0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP	0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small	0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD4	0
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar	0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin	0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived	0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma	0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis	0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum	0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal	0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic	0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal	0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal	0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen	0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen	0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B	0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair	0.673
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast	0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis	0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal	0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell	0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral	0.0677
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal	0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum	0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue	0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small	0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast	0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung	0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular	0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate	0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid	0
C156-plasma-splenic-hereditary-B-large-xeroderma-b	0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea	0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen	0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal	0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain	0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral	0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta	0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon	0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal	0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma	0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial	0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung	0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD4	0
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral	0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma	0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage	0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet	0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye	0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes	0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose	0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils	0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural	0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19	0.17
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous	0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus	0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil	0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood	0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle	0.321
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar	0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute	0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt	0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid	0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis	0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid	0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage	0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat	0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen	0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma	0
C190-colon-small-rectum-duodenum-appendix-temporal-oral	0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic	0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD4	0
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD14	0
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar	0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal	0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial	0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival	0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes	0.504
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma	0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast	0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat	0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed	-0.0461
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall	0
C202-salivary-skin-penis-tongue-uterus-cervical-immature	0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic	0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD34	0
C205-mycosis-cord-hairy-xeroderma-CD4-B-b	0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary	0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte	0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous	0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen	0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic	0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil	0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney	0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD34	0
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral	0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain	0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature	0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD34	0
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital	0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary	0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum	0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD19	0
C220-Adipocyte-mature-left-breast-skin-liver-adipose	0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular	0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte	-0.0499
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte	0.218
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal	0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal	0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal	0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue	0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult	0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart	0.023
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD14	0
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung	0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis	0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum	0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF7	0
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma	0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas	0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma	0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial	0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell	0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy	0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral	0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal	0.126
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus	-0.0344
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach	0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing	0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage	0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic	0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory	0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital	0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast	0.504
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial	0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall	0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD4	0
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue	0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma	0.0677
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum	0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris	0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast	0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla	0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral	0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric	0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing	0.224
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole	0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood	0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal	0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms	0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil	0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute	0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8	0
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast	0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear	0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate	0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD4	0
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung	0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth	0.164
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum	0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil	0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast	0.126
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte	0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal	0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal	0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma	0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory	0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial	0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic	0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD4	0.0677
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small	0.382
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat	0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular	0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus	0.291
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic	0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial	0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal	0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal	0.588
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left	0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart	0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature	0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea	0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal	0.285
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD34	0
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral	0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte	1.087
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed	0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral	0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital	0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood	0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala	0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal	0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils	0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic	0.657
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid	0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole	0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus	0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea	0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory	0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen	0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile	0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula	0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt	0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea	0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms	0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD133	0
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus	0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small	0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal	0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon	0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder	0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature	0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS	0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel	0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix	0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus	0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma	0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas	0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma	0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas	0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma	0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary	0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature	0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma	0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue	0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural	0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H9	0
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic	0.783
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature	0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical	0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b	0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph	0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute	0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic	0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils	0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus	0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung	0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma	0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK	0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast	0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue	0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate	0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left	0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal	0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy	0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral	0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell	0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD8	0
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea	0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal	0.926
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD34	0
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast	0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid	0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD34	0
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic	0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon	0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma	0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma	0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic	0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived	0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic	0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left	0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen	0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair	0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole	0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular	0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma	0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid	0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix	0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain	0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole	0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs12582

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	0.00105
MA0003.1	MA0003.1	0.0102
MA0004.1	MA0004.1	0.268
MA0006.1	MA0006.1	0.695
MA0007.1	MA0007.1	0.321
MA0009.1	MA0009.1	0.644
MA0014.1	MA0014.1	0.321
MA0017.1	MA0017.1	8.67843e-4
MA0018.2	MA0018.2	0.712
MA0019.1	MA0019.1	0.0731
MA0024.1	MA0024.1	0.0172
MA0025.1	MA0025.1	0.0454
MA0027.1	MA0027.1	0.583
MA0028.1	MA0028.1	0.384
MA0029.1	MA0029.1	0.673
MA0030.1	MA0030.1	0.0284
MA0031.1	MA0031.1	0.0152
MA0035.2	MA0035.2	2.28334e-4
MA0038.1	MA0038.1	0.469
MA0039.2	MA0039.2	0.348
MA0040.1	MA0040.1	0.404
MA0041.1	MA0041.1	0.258
MA0042.1	MA0042.1	0.356
MA0043.1	MA0043.1	0.103
MA0046.1	MA0046.1	0.177
MA0047.2	MA0047.2	0.105
MA0048.1	MA0048.1	0.00346
MA0050.1	MA0050.1	0.0337
MA0051.1	MA0051.1	0.0189
MA0052.1	MA0052.1	0.686
MA0055.1	MA0055.1	0.143
MA0057.1	MA0057.1	0.588
MA0058.1	MA0058.1	0.109
MA0059.1	MA0059.1	0.0997
MA0060.1	MA0060.1	0.432
MA0061.1	MA0061.1	1.56567e-4
MA0062.2	MA0062.2	0.957
MA0065.2	MA0065.2	6.31487e-5
MA0066.1	MA0066.1	0.253
MA0067.1	MA0067.1	0.996
MA0068.1	MA0068.1	0.712
MA0069.1	MA0069.1	0.0313
MA0070.1	MA0070.1	0.347
MA0071.1	MA0071.1	0.0609
MA0072.1	MA0072.1	0.067
MA0073.1	MA0073.1	0.898
MA0074.1	MA0074.1	0.187
MA0076.1	MA0076.1	0.15
MA0077.1	MA0077.1	0.781
MA0078.1	MA0078.1	0.341
MA0079.2	MA0079.2	0.228
MA0080.2	MA0080.2	2.33642e-9
MA0081.1	MA0081.1	0.158
MA0083.1	MA0083.1	0.0107
MA0084.1	MA0084.1	0.195
MA0087.1	MA0087.1	0.582
MA0088.1	MA0088.1	0.964
MA0090.1	MA0090.1	0.0334
MA0091.1	MA0091.1	0.105
MA0092.1	MA0092.1	0.694
MA0093.1	MA0093.1	0.312
MA0099.2	MA0099.2	0.363
MA0100.1	MA0100.1	0.222
MA0101.1	MA0101.1	0.00124
MA0102.2	MA0102.2	0.242
MA0103.1	MA0103.1	8.20781e-6
MA0104.2	MA0104.2	0.0181
MA0105.1	MA0105.1	1.29794e-5
MA0106.1	MA0106.1	0.791
MA0107.1	MA0107.1	3.06238e-4
MA0108.2	MA0108.2	0.0915
MA0111.1	MA0111.1	0.227
MA0112.2	MA0112.2	0.00434
MA0113.1	MA0113.1	0.588
MA0114.1	MA0114.1	0.00122
MA0115.1	MA0115.1	0.205
MA0116.1	MA0116.1	0.125
MA0117.1	MA0117.1	0.927
MA0119.1	MA0119.1	0.51
MA0122.1	MA0122.1	0.761
MA0124.1	MA0124.1	0.589
MA0125.1	MA0125.1	0.942
MA0131.1	MA0131.1	0.181
MA0135.1	MA0135.1	0.195
MA0136.1	MA0136.1	8.60564e-8
MA0137.2	MA0137.2	0.161
MA0138.2	MA0138.2	0.179
MA0139.1	MA0139.1	0.0593
MA0140.1	MA0140.1	0.0358
MA0141.1	MA0141.1	0.00292
MA0142.1	MA0142.1	0.212
MA0143.1	MA0143.1	0.521
MA0144.1	MA0144.1	0.141
MA0145.1	MA0145.1	0.465
MA0146.1	MA0146.1	0.0481
MA0147.1	MA0147.1	0.101
MA0148.1	MA0148.1	0.0113
MA0149.1	MA0149.1	0.785
MA0150.1	MA0150.1	0.0905
MA0152.1	MA0152.1	0.0538
MA0153.1	MA0153.1	0.574
MA0154.1	MA0154.1	0.00112
MA0155.1	MA0155.1	0.0866
MA0156.1	MA0156.1	0.0198
MA0157.1	MA0157.1	0.0192
MA0159.1	MA0159.1	0.0435
MA0160.1	MA0160.1	0.00115
MA0162.1	MA0162.1	0.765
MA0163.1	MA0163.1	0.24
MA0164.1	MA0164.1	0.423
MA0258.1	MA0258.1	0.0117
MA0259.1	MA0259.1	0.392

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs12582

Novel motif	Logo	P-value
1	1	0.194
10	10	0.699
100	100	0.823
101	101	0.865
102	102	0.567
103	103	0.0114
104	104	0.747
105	105	0.34
106	106	0.033
107	107	0.698
108	108	0.877
109	109	0.0375
11	11	0.102
110	110	0.552
111	111	0.199
112	112	0.165
113	113	0.386
114	114	0.064
115	115	0.989
116	116	0.943
117	117	0.316
118	118	0.33
119	119	0.0927
12	12	0.758
120	120	0.0525
121	121	0.615
122	122	0.117
123	123	0.872
124	124	0.0874
125	125	0.811
126	126	0.073
127	127	0.129
128	128	0.0404
129	129	0.0604
13	13	0.761
130	130	0.816
131	131	0.194
132	132	0.57
133	133	0.711
134	134	0.825
135	135	0.898
136	136	0.235
137	137	0.692
138	138	0.255
139	139	0.00944
14	14	0.61
140	140	0.147
141	141	0.0765
142	142	0.244
143	143	0.0149
144	144	0.965
145	145	0.841
146	146	0.415
147	147	0.459
148	148	0.162
149	149	0.784
15	15	0.0361
150	150	0.991
151	151	0.297
152	152	0.586
153	153	0.631
154	154	0.255
155	155	0.128
156	156	0.411
157	157	0.109
158	158	0.341
159	159	0.317
16	16	0.382
160	160	0.0396
161	161	0.129
162	162	0.424
163	163	0.611
164	164	0.977
165	165	0.59
166	166	0.147
167	167	0.884
168	168	0.48
169	169	0.0564
17	17	0.459
18	18	0.291
19	19	0.756
2	2	0.415
20	20	0.992
21	21	0.315
22	22	0.208
23	23	0.183
24	24	0.125
25	25	0.17
26	26	0.927
27	27	0.146
28	28	0.852
29	29	0.461
3	3	0.636
30	30	0.71
31	31	0.382
32	32	0.0076
33	33	0.302
34	34	0.619
35	35	0.123
36	36	0.189
37	37	0.313
38	38	0.289
39	39	0.95
4	4	0.469
40	40	0.0641
41	41	0.0378
42	42	0.526
43	43	0.245
44	44	0.0376
45	45	0.317
46	46	0.289
47	47	0.253
48	48	0.528
49	49	0.185
5	5	0.398
50	50	0.708
51	51	0.272
52	52	0.406
53	53	0.941
54	54	0.399
55	55	0.585
56	56	0.342
57	57	0.879
58	58	0.0629
59	59	0.0188
6	6	0.455
60	60	0.0907
61	61	0.219
62	62	0.0349
63	63	0.55
64	64	0.134
65	65	0.17
66	66	0.892
67	67	0.866
68	68	0.581
69	69	0.776
7	7	0.158
70	70	0.00389
71	71	0.369
72	72	0.204
73	73	0.384
74	74	0.407
75	75	0.133
76	76	0.991
77	77	0.311
78	78	0.124
79	79	0.283
8	8	0.133
80	80	0.281
81	81	0.422
82	82	0.0876
83	83	0.2
84	84	0.865
85	85	0.063
86	86	0.815
87	87	0.754
88	88	0.62
89	89	0.104
9	9	0.559
90	90	0.258
91	91	0.824
92	92	0.396
93	93	0.459
94	94	0.226
95	95	0.193
96	96	0.588
97	97	0.748
98	98	0.11
99	99	0.825

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs12582

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
EFO:0002091 biological replicate
FF:0000668 human Fibroblast - skin normal, nuclear fraction sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0002320 (connective tissue cell)
0002371 (somatic cell)
0000255 (eukaryotic cell)
0000057 (fibroblast)
0002620 (skin fibroblast)

UBERON: Anatomy
0000468 (multi-cellular organism)
0002097 (skin of body)
0002199 (integument)
0002384 (connective tissue)
0000479 (tissue)
0000062 (organ)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0003102 (surface structure)
0002416 (integumental system)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000057 (fibroblast sample)
0000250 (human fibroblast of skin sample)
0000001 (sample)
0000408 (cellular fractionation sample)
0000350 (experimentally modified sample)
0000406 (nuclear fraction sample)
0000668 (human Fibroblast - skin normal, nuclear fraction sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
CL:0000134 (mesenchymal cell)

@@ Line 1: / Line 1: @@
 {{f5samples
+|DRA_sample_Accession=CAGE@SAMD00005582
+|DRA_sample_Accession_RNASeq=sRNA-Seq@SAMD00005582
+|accession_numbers=CAGE;DRX008038;DRR008910;DRZ000335;DRZ001720;DRZ011685;DRZ013070
+|accession_numbers_RNASeq=sRNA-Seq;DRX036983;DRR041349;DRZ006991
 |ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0002097,UBERON:0002199,UBERON:0002384,UBERON:0000479,UBERON:0000062,UBERON:0000061,UBERON:0000465,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0003102,UBERON:0002416
 |ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0002320,CL:0002371,CL:0000255,CL:0000057,CL:0002620
@@ Line 7: / Line 11: @@
 |created_by=
 |creation_date=
-|datafreeze_phase=1
+|data_phase=2
+|datafreeze_phase=2
 |def=
 |expression_enrichment_score=chr12:54410664..54410684,+!p1@HOXC4,p1@HOXC5,p1@HOXC6!2.08!119.32!HOXC5;;chr1:170632285..170632309,+!p1@PRRX1!1.85!78.31!PRRX1;;chr7:19157248..19157268,-!p1@TWIST1!1.71!133.33!TWIST1;;chr17:46682321..46682362,-!p1@HOXB6!1.57!36.12!HOXB6;;chr9:132427883..132427951,+!p2@PRRX2!1.53!32.91!PRRX2;;chr18:53068911..53068935,-!p4@TCF4!1.47!32.24!TCF4;;chr1:197886461..197886558,+!p1@LHX9!1.43!25.82!LHX9;;chr11:46299199..46299233,+!p1@CREB3L1!1.41!122.53!CREB3L1;;chr17:46667594..46667619,-!p1@HOXB3!1.41!24.98!HOXB3;;chr6:10415276..10415341,-!p2@TFAP2A!1.36!26.50!TFAP2A;;chr12:54410639..54410659,+!p2@HOXC4,p2@HOXC5,p2@HOXC6!1.35!21.27!HOXC5;;chrY:21906594..21906622,-!p1@KDM5D!1.35!21.27!KDM5D;;chr11:46299539..46299620,+!p2@CREB3L1!1.34!34.77!CREB3L1;;chr2:102091566..102091581,-!p1@RFX8!1.34!20.76!RFX8;;chr1:170633348..170633399,+!p2@PRRX1!1.30!25.65!PRRX1;;chr12:54402745..54402788,+!p1@HOXC8!1.28!17.89!HOXC8;;chr15:57511609..57511651,+!p2@TCF12!1.26!28.69!TCF12;;chr5:72744594..72744609,-!p1@FOXD1!1.24!74.43!FOXD1;;chr17:46667628..46667642,-!p2@HOXB3!1.21!15.36!HOXB3;;chr2:102091144..102091183,-!p2@RFX8!1.18!14.18!RFX8;;chr9:132427972..132428056,+!p1@PRRX2!1.17!18.06!PRRX2;;chr1:209979467..209979494,-!p1@IRF6!1.16!15.19!IRF6;;chr1:170632959..170632987,+!p4@PRRX1!1.15!14.51!PRRX1;;chr1:170633058..170633084,+!p5@PRRX1!1.12!12.32!PRRX1;;chr1:170632477..170632506,+!p6@PRRX1!1.11!11.98!PRRX1;;chr12:54393880..54393962,+!p1@HOXC9!1.10!11.65!HOXC9;;chr6:19837592..19837621,+!p1@ID4!1.09!69.37!ID4;;chr5:2751762..2751784,-!p1@IRX2!1.09!11.31!IRX2;;chr1:170632439..170632465,+!p11@PRRX1!1.08!10.97!PRRX1;;chr8:106330656..106330684,+!p1@ZFPM2!1.07!28.35!ZFPM2;;chr19:13134772..13134822,+!p2@NFIX!1.06!15.36!NFIX;;chr8:67525443..67525459,-!p2@MYBL1!1.05!15.53!MYBL1;;chr1:170633262..170633285,+!p3@PRRX1!1.05!11.81!PRRX1;;chrY:2803415..2803468,+!p1@ZFY!1.05!10.30!ZFY;;chr2:119605214..119605230,-!p1@EN1!1.05!10.13!EN1;;chr7:44143925..44143970,+!p1@AEBP1!1.04!226.16!AEBP1;;chr4:111558135..111558198,-!p2@PITX2!1.04!9.96!PITX2;;chr10:119303078..119303169,+!p2@EMX2!1.04!9.96!EMX2;;chr2:239756671..239756732,+!p1@TWIST2!1.03!31.39!TWIST2;;chr19:47523058..47523114,+!p1@NPAS1!1.02!9.45!NPAS1;;chr12:66218255..66218304,+!p3@HMGA2!1.01!24.98!HMGA2;;chr6:144289132..144289134,-!p3@PLAGL1!1.01!22.11!PLAGL1;;chr6:10412600..10412637,-!p1@TFAP2A!1.01!15.70!TFAP2A;;chr1:170632250..170632277,+!p7@PRRX1!1.00!9.11!PRRX1;;chr1:170632723..170632739,+!p8@PRRX1!1.00!9.11!PRRX1;;chr5:72744445..72744466,-!p2@FOXD1!0.98!14.51!FOXD1;;chr2:223163706..223163730,-!p1@PAX3!0.98!8.61!PAX3;;chr6:144329384..144329405,-!p1@PLAGL1!0.97!99.92!PLAGL1;;chr12:115121962..115121987,-!p1@TBX3!0.96!70.55!TBX3;;chr5:321810..321877,+!p1@AHRR!0.95!25.99!AHRR;;chr2:200322654..200322707,-!p2@SATB2!0.94!11.31!SATB2;;chr6:134210243..134210257,+!p1@TCF21!0.94!7.76!TCF21;;chr7:27205136..27205164,-!p1@HOXA9!0.93!7.59!HOXA9;;chr2:177001290..177001315,+!p1@HOXD3!0.93!7.59!HOXD3;;chr1:119530493..119530572,-!p1@TBX15!0.93!7.59!TBX15;;chr12:66218598..66218645,+!p2@HMGA2!0.92!34.77!HMGA2;;chr7:44143978..44143989,+!p2@AEBP1!0.92!13.67!AEBP1;;chr7:137686763..137686784,-!p5@CREB3L2!0.92!13.00!CREB3L2;;chr11:65686802..65686818,+!p6@DRAP1!0.92!13.00!DRAP1;;chr12:124873852..124873881,-!p3@NCOR2!0.91!45.40!NCOR2;;chr11:46316699..46316719,+!p10@CREB3L1!0.91!7.09!CREB3L1;;chr7:27192185..27192209,-!p1@HOXA3!0.91!7.09!HOXA3;;chr2:239756739..239756755,+!p2@TWIST2!0.90!12.15!TWIST2;;chr2:85981107..85981120,+!p3@ATOH8!0.90!6.92!ATOH8;;chr12:124873357..124873401,-!p1@NCOR2!0.89!82.70!NCOR2;;chr15:83953397..83953425,-!p1@BNC1!0.89!7.93!BNC1;;chr3:128206762..128206781,-!p2@GATA2!0.87!41.86!GATA2;;chr8:106330696..106330719,+!p2@ZFPM2!0.86!8.10!ZFPM2;;chr2:172949484..172949522,+!p1@DLX1!0.86!6.24!DLX1;;chr3:114343768..114343822,-!p1@ZBTB20!0.85!28.02!ZBTB20;;chr2:172967242..172967265,-!p2@DLX2!0.85!6.08!DLX2;;chr2:208030647..208030689,-!p1@KLF7!0.84!52.66!KLF7;;chr12:53614115..53614154,-!p1@RARG!0.84!33.59!RARG;;chr11:65686732..65686756,+!p2@DRAP1!0.84!26.67!DRAP1;;chr19:31840130..31840160,-!p2@TSHZ3!0.84!9.45!TSHZ3;;chr6:85473156..85473210,-!p2@TBX18!0.84!7.43!TBX18;;chr17:38256799..38256815,-!p3@NR1D1!0.83!10.80!NR1D1;;chr5:72743793..72743855,-!p4@FOXD1!0.83!6.92!FOXD1;;chr16:86612320..86612394,+!p1@FOXL1!0.83!5.74!FOXL1;;chr12:54379029..54379057,+!p2@HOXC10!0.83!5.74!HOXC10;;chr17:41277372..41277418,-!p1@BRCA1!0.82!21.77!BRCA1;;chr16:67881588..67881612,-!p2@CENPT!0.82!7.76!CENPT;;chr15:37392534..37392562,-!p10@MEIS2!0.82!6.24!MEIS2;;chr19:13135582..13135600,+!p3@NFIX!0.82!5.57!NFIX;;chr12:54402729..54402743,+!p3@HOXC8!0.82!5.57!HOXC8;;chr1:2985760..2985774,+!p1@PRDM16!0.82!5.57!PRDM16;;chr17:46667561..46667572,-!p4@HOXB3!0.81!5.40!HOXB3;;chr2:85981073..85981091,+!p5@ATOH8!0.81!5.40!ATOH8;;chr21:36260295..36260310,-!p3@RUNX1!0.80!8.95!RUNX1;;chr12:66218378..66218401,+!p6@HMGA2!0.80!8.61!HMGA2;;chr20:51588873..51588953,+!p1@TSHZ2!0.80!7.26!TSHZ2;;chr10:63809106..63809127,+!p1@ARID5B!0.79!75.61!ARID5B;;chr1:170632683..170632696,+!p12@PRRX1!0.79!5.23!PRRX1;;chr1:170632762..170632786,+!p13@PRRX1!0.79!5.23!PRRX1;;chr3:150126759..150126784,+!p2@TSC22D2!0.78!25.15!TSC22D2;;chr3:150126904..150126958,+!p7@TSC22D2!0.78!9.28!TSC22D2;;chr17:46688334..46688385,-!p1@HOXB7!0.78!7.59!HOXB7;;chr5:43067636..43067674,+!p6@ZNF131!0.78!7.09!ZNF131;;chr2:66662895..66662907,+!p3@MEIS1!0.78!6.41!MEIS1;;chr7:27205106..27205134,-!p2@HOXA9!0.78!5.06!HOXA9;;chr20:30193083..30193098,+!p1@ID1!0.77!440.51!ID1;;chr2:85980951..85981004,+!p1@ATOH8!0.77!8.44!ATOH8;;chr15:37390374..37390422,-!p9@MEIS2!0.76!6.08!MEIS2;;chr12:54380404..54380433,+!p3@HOXC10!0.76!4.73!HOXC10;;chr5:2751785..2751808,-!p2@IRX2!0.76!4.73!IRX2;;chr19:22817119..22817145,+!p1@ZNF492!0.75!8.10!ZNF492;;chr12:80085061..80085119,-!p6@PAWR!0.75!7.76!PAWR;;chr12:77459306..77459365,-!p1@E2F7!0.74!62.78!E2F7;;chr3:141121847..141121868,+!p5@ZBTB38!0.74!7.26!ZBTB38;;chr5:158526459..158526481,-!p2@EBF1!0.74!6.24!EBF1;;chr3:21792585..21792625,-!p2@ZNF385D!0.74!5.06!ZNF385D;;chr4:174450089..174450153,-!p2@HAND2!0.74!4.56!HAND2;;chr1:2985726..2985752,+!p2@PRDM16!0.74!4.56!PRDM16;;chr14:24837368..24837401,+!p1@NFATC4!0.73!10.97!NFATC4;;chr12:54378923..54378966,+!p1@HOXC10!0.73!4.39!HOXC10;;chr1:170632115..170632136,+!p9@PRRX1!0.73!4.39!PRRX1;;chr5:139492456..139492489,+!p7@PURA!0.73!4.39!PURA;;chr7:27213893..27213954,-!p1@HOXA10!0.73!4.39!HOXA10;;chrY:21906761..21906810,-!p2@KDM5D!0.73!4.39!KDM5D;;chr5:158526917..158526932,-!p1@EBF1!0.72!11.48!EBF1;;chr17:46690839..46690884,-!p1@HOXB8!0.72!4.22!HOXB8;;chr10:131762504..131762555,-!p1@EBF3!0.72!4.22!EBF3;;chr8:77593474..77593612,+!p1@ZFHX4!0.71!19.41!ZFHX4;;chr3:71630980..71631110,-!p3@FOXP1!0.71!16.03!FOXP1;;chr14:73360799..73360817,-!p1@DPF3!0.71!15.86!DPF3;;chr15:66994663..66994680,+!p1@SMAD6!0.71!10.63!SMAD6;;chr15:37390850..37390909,-!p3@MEIS2!0.71!8.78!MEIS2;;chr7:77428149..77428220,+!p1@PHTF2!0.70!46.41!PHTF2;;chr8:93074803..93074845,-!p1@RUNX1T1!0.70!4.05!RUNX1T1;;chr12:54380036..54380091,+!p4@HOXC10!0.70!4.05!HOXC10;;chr14:55493763..55493824,-!p1@WDHD1!0.69!33.42!WDHD1;;chr15:37392724..37392757,-!p1@MEIS2!0.69!19.92!MEIS2;;chr2:66662281..66662308,+!p1@MEIS1!0.69!15.02!MEIS1;;chr7:150945754..150945789,-!p2@SMARCD3!0.69!13.50!SMARCD3;;chr12:66218212..66218244,+!p5@HMGA2!0.69!5.91!HMGA2;;chr10:119302645..119302712,+!p3@EMX2!0.69!3.88!EMX2;;chr1:158979792..158979814,+!p2@IFI16!0.68!41.18!IFI16;;chr1:47779762..47779827,-!p1@STIL,p1@TAL1!0.68!19.41!TAL1;;chr2:208394817..208394834,+!p3@CREB1!0.68!17.22!CREB1;;chr16:86600426..86600441,+!p1@FOXC2!0.68!10.30!FOXC2;;chr8:67525473..67525518,-!p1@MYBL1!0.68!9.45!MYBL1;;chr6:10412392..10412409,-!p4@TFAP2A!0.68!4.39!TFAP2A;;chr16:54964740..54964789,+!p1@IRX5!0.67!5.57!IRX5;;chr20:50179368..50179392,-!p2@NFATC2!0.67!4.89!NFATC2;;chr18:46475696..46475713,-!p1@SMAD7!0.67!4.22!SMAD7;;chr10:119302232..119302265,+!p1@EMX2!0.67!3.71!EMX2;;chr2:176994408..176994492,+!p1@HOXD8!0.67!3.71!HOXD8;;chr11:65667846..65667868,-!p1@FOSL1!0.66!110.89!FOSL1;;chr8:49833978..49833996,-!p1@SNAI2!0.66!84.73!SNAI2;;chr5:176738887..176738934,-!p1@MXD3!0.66!27.51!MXD3;;chr2:66662249..66662267,+!p2@MEIS1!0.66!15.70!MEIS1;;chr21:36259445..36259519,-!p4@RUNX1!0.66!11.14!RUNX1;;chr18:3448455..3448480,+!p5@TGIF1!0.66!7.09!TGIF1;;chr18:53254566..53254567,-!p8@TCF4!0.66!6.24!TCF4;;chr16:54320101..54320125,-!p4@IRX3!0.66!5.40!IRX3;;chr7:44143997..44144008,+!p3@AEBP1!0.66!4.73!AEBP1;;chr2:102091478..102091490,-!p3@RFX8!0.66!3.54!RFX8;;chr2:66662510..66662521,+!p6@MEIS1!0.66!3.54!MEIS1;;chr12:114843940..114843955,-!p2@TBX5!0.66!3.54!TBX5;;chr12:54402790..54402805,+!p2@HOXC8!0.66!3.54!HOXC8;;chr7:42276787..42276815,-!p1@GLI3!0.65!10.46!GLI3;;chr5:138647473..138647476,+!p6@MATR3!0.64!9.45!MATR3;;chr2:71127699..71127744,+!p1@VAX2!0.64!7.59!VAX2;;chr2:119604456..119604501,-!p2@EN1!0.64!3.38!EN1;;chr2:66662396..66662407,+!p4@MEIS1!0.64!3.38!MEIS1;;chr3:21792631..21792665,-!p3@ZNF385D!0.64!3.38!ZNF385D;;chr19:13135386..13135435,+!p4@NFIX!0.64!3.38!NFIX;;chr6:10412576..10412599,-!p5@TFAP2A!0.64!3.38!TFAP2A;;chr10:3827389..3827408,-!p1@KLF6!0.63!299.75!KLF6;;chr19:45971246..45971265,+!p1@FOSB!0.63!73.08!FOSB;;chr2:121493425..121493474,+!p1@GLI2!0.63!7.93!GLI2;;chr19:47922750..47922795,-!p1@MEIS3!0.63!5.74!MEIS3;;chr12:125002827..125002855,-!p5@NCOR2!0.63!4.89!NCOR2;;chr15:37392593..37392607,-!p13@MEIS2!0.63!4.05!MEIS2;;chr16:67867749..67867852,-!p1@CENPT!0.62!86.08!CENPT;;chr4:4861385..4861398,+!p1@MSX1!0.62!10.63!MSX1;;chr8:145669791..145669834,-!p1@TONSL!0.62!10.46!TONSL;;chr2:121493492..121493537,+!p2@GLI2!0.62!5.74!GLI2;;chr15:37390482..37390572,-!p7@MEIS2!0.62!4.56!MEIS2;;chr18:52969674..52969685,-!p24@TCF4!0.62!3.21!TCF4;;chr3:42695180..42695201,+!p2@ZBTB47!0.62!3.21!ZBTB47;;chr12:115121770..115121781,-!p4@TBX3!0.62!3.21!TBX3;;chr12:80085120..80085156,-!p14@PAWR!0.62!3.21!PAWR;;chr10:114709999..114710031,+!p1@TCF7L2!0.61!87.43!TCF7L2;;chr6:31126291..31126399,+!p1@TCF19!0.61!34.94!TCF19;;chr10:3827371..3827386,-!p2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@@ Line 38: / Line 43: @@
 |fonse_treatment_closure=
 |has_quality=
+|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.fractionation.hCAGE/Fibroblast%2520-%2520skin%2520normal%252c%2520donor2%2520%2528nuclear%2520fraction%2529.CNhs12582.14302-155B9.hg19.nobarcode.bam
+|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.fractionation.hCAGE/Fibroblast%2520-%2520skin%2520normal%252c%2520donor2%2520%2528nuclear%2520fraction%2529.CNhs12582.14302-155B9.hg19.ctss.bed.gz
+|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.fractionation.hCAGE/Fibroblast%2520-%2520skin%2520normal%252c%2520donor2%2520%2528nuclear%2520fraction%2529.CNhs12582.14302-155B9.hg19.nobarcode.rdna.fa.gz
+|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.fractionation.hCAGE/Fibroblast%2520-%2520skin%2520normal%252c%2520donor2%2520%2528nuclear%2520fraction%2529.CNhs12582.14302-155B9.hg38.nobarcode.bam
+|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.fractionation.hCAGE/Fibroblast%2520-%2520skin%2520normal%252c%2520donor2%2520%2528nuclear%2520fraction%2529.CNhs12582.14302-155B9.hg38.nobarcode.ctss.bed.gz
 |id=FF:14302-155B9
 |is_a=EFO:0002091;;FF:0000668
 |is_obsolete=
+|library_id=CNhs12582
+|library_id_phase_based=2:CNhs12582
+|microRNAs=
+|microRNAs_nn=
+|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;14302
+|microRNAs_nonnovel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#srna;sample;SRhi10009.ACAGTG.14302
+|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;14302
+|microRNAs_novel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer_novel/#/human#srna;sample;SRhi10009.ACAGTG.14302
 |name=Fibroblast - skin normal, donor2 (nuclear fraction)
 |namespace=FANTOM5
@@ Line 46: / Line 64: @@
 |profile_cagescan=,,,
 |profile_hcage=CNhs12582,LSID912,release012,COMPLETED
-|profile_rnaseq=,,,
+|profile_rnaseq=
 |profile_srnaseq=SRhi10009,,,
+|refex=http://refex.dbcls.jp/genelist.php?lang
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@@ Line 62: / Line 81: @@
 |rna_tube_id=155B9
 |rna_weight_ug=10.2
+|rnaseq_library_id=SRhi10009.ACAGTG
 |sample_age=3 year old child
+|sample_category=fractionations and perturbations
 |sample_cell_catalog=N/A
 |sample_cell_line=
@@ Line 84: / Line 105: @@
 |top_motifs=HBP1_HMGB_SSRP1_UBTF:2.70352351509;NKX3-1:2.19423753934;EN1,2:2.09405060962;TOPORS:2.05249817699;ALX4:2.03342984804;ZNF384:1.83461449249;HIF1A:1.74565650876;XBP1:1.56496051319;PITX1..3:1.48018603739;MYBL2:1.46590259521;FOXP1:1.38954441296;TFDP1:1.37753330902;ZNF238:1.35603636626;HMGA1,2:1.34410513826;GFI1:1.32955253911;TEAD1:1.32796729966;NKX3-2:1.32688215835;HSF1,2:1.31377881735;GZF1:1.26644751571;SRF:1.2408739926;HOX{A5,B5}:1.1851296749;EVI1:1.17098306409;GTF2A1,2:1.14781398213;GATA4:1.127936979;PRDM1:1.08603781724;GFI1B:1.04383434595;KLF4:1.03866715033;PAX8:1.01784720465;SOX17:0.979420690506;HOX{A6,A7,B6,B7}:0.977121937062;E2F1..5:0.951288937886;RXR{A,B,G}:0.944159525849;MTE{core}:0.940664727191;GCM1,2:0.921323370833;HOX{A4,D4}:0.901440321529;POU3F1..4:0.881452117626;AHR_ARNT_ARNT2:0.878528780453;MZF1:0.853610588544;ESR1:0.820502806933;MYB:0.807102209085;GTF2I:0.77133004179;PPARG:0.767973495963;STAT1,3:0.76420642071;XCPE1{core}:0.747941608517;UFEwm:0.747110524813;FOXL1:0.7463449756;TLX1..3_NFIC{dimer}:0.720916905832;ZIC1..3:0.719402866128;NKX6-1,2:0.701336673898;MAZ:0.665431979968;SMAD1..7,9:0.653577577081;NKX2-1,4:0.648487593322;ELK1,4_GABP{A,B1}:0.633361235011;TP53:0.573987461453;NR3C1:0.572014470695;NFATC1..3:0.56679709036;MAFB:0.550212284078;TFAP2B:0.536465857884;TAL1_TCF{3,4,12}:0.532569514228;NKX2-2,8:0.5295016603;DBP:0.521446812163;MED-1{core}:0.520415789074;NFY{A,B,C}:0.514799346777;YY1:0.507668229346;ZNF143:0.491614447676;NRF1:0.479022261223;NFE2L1:0.443307515582;POU1F1:0.437739707074;POU5F1:0.436255300792;GLI1..3:0.4182673028;PAX4:0.414455570354;FOX{I1,J2}:0.408732885976;EP300:0.406821828788;FOXN1:0.390895932769;BACH2:0.359618258997;HMX1:0.356362876101;HES1:0.356024435584;TBP:0.347864097511;TEF:0.340096768339;RXRA_VDR{dimer}:0.330934966522;SPZ1:0.327177063843;FOS_FOS{B,L1}_JUN{B,D}:0.323133217211;ALX1:0.307192432035;CREB1:0.302674576891;PAX3,7:0.290413232291;AIRE:0.273294702146;SOX5:0.210679360213;FOSL2:0.174767781762;NFE2L2:0.165480196878;CDC5L:0.145986480913;LHX3,4:0.128872070107;ZBTB16:0.125893641398;CEBPA,B_DDIT3:0.115774256226;ATF6:0.114233822786;HLF:0.105790420403;FOXA2:0.101064768562;RFX1:0.0999623595054;MEF2{A,B,C,D}:0.0980653922032;TLX2:0.0918964892255;NKX2-3_NKX2-5:0.0862608425374;RREB1:0.0826443968814;EBF1:0.0807016439319;FOXD3:0.0755361002146;ZBTB6:0.0675663608309;NFE2:0.0518515919845;HIC1:0.0478460536597;IKZF1:0.0404427506804;NANOG{mouse}:0.036870890382;SP1:0.0270277282751;TFAP4:0.0209498284994;ELF1,2,4:0.0139518998535;PRRX1,2:-0.00673951760799;SOX2:-0.0138145150841;TFAP2{A,C}:-0.0187195327916;EGR1..3:-0.0195056907009;LEF1_TCF7_TCF7L1,2:-0.0450949423457;ZFP161:-0.0519257562142;MYFfamily:-0.0646638411016;BPTF:-0.0760493641578;NR1H4:-0.0846648347956;VSX1,2:-0.096802677077;DMAP1_NCOR{1,2}_SMARC:-0.104952832323;SREBF1,2:-0.106679601885;ZNF148:-0.108226787597;ATF5_CREB3:-0.135672086569;T:-0.13971215641;PATZ1:-0.142221744712;SOX{8,9,10}:-0.146943746117;PDX1:-0.171986520084;ADNP_IRX_SIX_ZHX:-0.217688172819;PAX5:-0.233348342603;OCT4_SOX2{dimer}:-0.256024766277;NFIL3:-0.263748964942;PAX2:-0.268527692334;JUN:-0.28143173338;NFIX:-0.286934595792;IRF1,2:-0.299855482723;NHLH1,2:-0.301902748465;HNF1A:-0.305371760232;RFX2..5_RFXANK_RFXAP:-0.324529038983;BREu{core}:-0.325907154238;STAT2,4,6:-0.334893044865;ONECUT1,2:-0.3378324781;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.41669807785;ZNF423:-0.417371176147;ATF4:-0.423869117327;RUNX1..3:-0.428944498522;HOXA9_MEIS1:-0.44258010771;bHLH_family:-0.45204881078;TFCP2:-0.456532111286;TBX4,5:-0.468531222121;POU6F1:-0.476416085993;FOX{D1,D2}:-0.488298513541;SPI1:-0.488614934895;SPIB:-0.494047613334;NANOG:-0.495030042738;CUX2:-0.54319045937;FOXO1,3,4:-0.568778693732;CRX:-0.579767023592;MTF1:-0.580501327521;AR:-0.607793592046;ETS1,2:-0.613309890343;RBPJ:-0.61349964092;POU2F1..3:-0.668260066167;HAND1,2:-0.675025543171;PAX1,9:-0.696240479342;NFKB1_REL_RELA:-0.713583983522;CDX1,2,4:-0.714330854878;TGIF1:-0.715821756299;HNF4A_NR2F1,2:-0.728233349829;NR6A1:-0.730960565006;ATF2:-0.733114766224;ARID5B:-0.741037478436;IKZF2:-0.802318170935;REST:-0.834944889673;IRF7:-0.845031696999;FOXP3:-0.857780331527;FOXQ1:-0.894228102275;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.915203551771;GATA6:-0.98718556029;STAT5{A,B}:-1.10737812677;PBX1:-1.15209365084;NR5A1,2:-1.19856141685;FOXM1:-1.25580780188;SNAI1..3:-1.27496662624;ZEB1:-1.37051812453;LMO2:-1.42629959578;PAX6:-1.50432045777;RORA:-1.6244849389;ESRRA:-1.7875225255;FOX{F1,F2,J1}:-1.84020154824;MYOD1:-1.98238331001
 |xref=
+|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:14302-155B9;search_select_hide=table117:FF:14302-155B9
 }}

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FF:14302-155B9: Difference between revisions

From FANTOM5_SSTAR

Latest revision as of 19:05, 4 June 2020

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	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0