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{{f5samples
{{f5samples
|DRA_sample_Accession=CAGE@SAMD00005618
|accession_numbers=CAGE;DRX008040;DRR008912;DRZ000337;DRZ001722;DRZ011687;DRZ013072
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0002097,UBERON:0002199,UBERON:0002384,UBERON:0000479,UBERON:0000062,UBERON:0000061,UBERON:0000465,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0003102,UBERON:0002416
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0002097,UBERON:0002199,UBERON:0002384,UBERON:0000479,UBERON:0000062,UBERON:0000061,UBERON:0000465,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0003102,UBERON:0002416
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0002320,CL:0002371,CL:0000255,CL:0000057,CL:0002620
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0002320,CL:0002371,CL:0000255,CL:0000057,CL:0002620
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|created_by=
|created_by=
|creation_date=
|creation_date=
|datafreeze_phase=1
|data_phase=2
|datafreeze_phase=2
|def=
|def=
|expression_enrichment_score=chr1:197886461..197886558,+!p1@LHX9!2.67!471.45!LHX9;;chr7:19157248..19157268,-!p1@TWIST1!2.05!297.50!TWIST1;;chr12:54410664..54410684,+!p1@HOXC4,p1@HOXC5,p1@HOXC6!1.72!51.83!HOXC5;;chr20:50179368..50179392,-!p2@NFATC2!1.70!62.48!NFATC2;;chr9:132427883..132427951,+!p2@PRRX2!1.63!41.18!PRRX2;;chr15:57511609..57511651,+!p2@TCF12!1.55!56.80!TCF12;;chr15:37392534..37392562,-!p10@MEIS2!1.50!33.37!MEIS2;;chr10:28034739..28034756,-!p1@MKX!1.48!29.47!MKX;;chr8:67525443..67525459,-!p2@MYBL1!1.44!39.05!MYBL1;;chr19:45971246..45971265,+!p1@FOSB!1.42!451.22!FOSB;;chr11:46299539..46299620,+!p2@CREB3L1!1.42!41.89!CREB3L1;;chr11:46299199..46299233,+!p1@CREB3L1!1.41!123.19!CREB3L1;;chr2:176969228..176969260,+!p1@HOXD11!1.40!24.14!HOXD11;;chr2:176969097..176969109,+!p3@HOXD11!1.38!22.72!HOXD11;;chr1:170632285..170632309,+!p1@PRRX1!1.36!24.85!PRRX1;;chr1:197886421..197886432,+!p2@LHX9!1.34!20.95!LHX9;;chr6:19837592..19837621,+!p1@ID4!1.31!116.09!ID4;;chrY:21906594..21906622,-!p1@KDM5D!1.29!18.46!KDM5D;;chr2:176969179..176969226,+!p2@HOXD11!1.29!18.46!HOXD11;;chr15:37392703..37392717,-!p8@MEIS2!1.28!25.56!MEIS2;;chr15:37392616..37392638,-!p2@MEIS2!1.26!53.25!MEIS2;;chr3:147111231..147111281,+!p3@ZIC1!1.24!16.33!ZIC1;;chr15:37392724..37392757,-!p1@MEIS2!1.22!69.94!MEIS2;;chr15:37390850..37390909,-!p3@MEIS2!1.21!29.82!MEIS2;;chr10:119303078..119303169,+!p2@EMX2!1.18!14.20!EMX2;;chr5:72744594..72744609,-!p1@FOXD1!1.17!63.19!FOXD1;;chr5:2751762..2751784,-!p1@IRX2!1.17!13.85!IRX2;;chr7:27205136..27205164,-!p1@HOXA9!1.17!13.85!HOXA9;;chr14:75745523..75745537,+!p1@FOS!1.16!1601.09!FOS;;chr9:132427972..132428056,+!p1@PRRX2!1.16!17.40!PRRX2;;chr11:46316699..46316719,+!p10@CREB3L1!1.15!13.14!CREB3L1;;chr3:147111198..147111225,+!p4@ZIC1!1.14!12.78!ZIC1;;chr8:93074803..93074845,-!p1@RUNX1T1!1.13!12.43!RUNX1T1;;chr18:22932080..22932170,-!p1@ZNF521!1.11!50.41!ZNF521;;chr4:174451370..174451387,-!p1@HAND2!1.10!11.72!HAND2;;chr1:197886665..197886732,+!p3@LHX9!1.10!11.72!LHX9;;chr20:55204351..55204377,+!p1@TFAP2C!1.09!14.56!TFAP2C;;chr2:102091566..102091581,-!p1@RFX8!1.09!11.36!RFX8;;chr2:176969124..176969155,+!p5@HOXD11!1.09!11.36!HOXD11;;chr5:321810..321877,+!p1@AHRR!1.08!35.50!AHRR;;chr7:27224842..27224872,-!p1@HOXA11!1.08!11.01!HOXA11;;chr2:177001290..177001315,+!p1@HOXD3!1.07!10.65!HOXD3;;chr1:170632959..170632987,+!p4@PRRX1!1.05!11.36!PRRX1;;chr7:27192185..27192209,-!p1@HOXA3!1.04!9.94!HOXA3;;chr14:24837368..24837401,+!p1@NFATC4!1.02!22.72!NFATC4;;chr21:36260773..36260804,-!p7@RUNX1!1.02!12.78!RUNX1;;chr2:200322654..200322707,-!p2@SATB2!1.01!13.49!SATB2;;chr15:37390482..37390572,-!p7@MEIS2!1.01!12.78!MEIS2;;chr15:37392576..37392589,-!p12@MEIS2!1.01!11.36!MEIS2;;chr5:158526917..158526932,-!p1@EBF1!0.98!22.01!EBF1;;chr7:137686763..137686784,-!p5@CREB3L2!0.98!14.91!CREB3L2;;chr1:170633348..170633399,+!p2@PRRX1!0.98!11.72!PRRX1;;chr2:172950227..172950249,+!p2@DLX1!0.98!8.52!DLX1;;chr12:115121962..115121987,-!p1@TBX3!0.97!72.78!TBX3;;chr4:81118647..81118666,+!p1@PRDM8!0.97!11.01!PRDM8;;chr7:42276787..42276815,-!p1@GLI3!0.96!22.37!GLI3;;chr5:72743793..72743855,-!p4@FOXD1!0.96!9.59!FOXD1;;chr3:114343768..114343822,-!p1@ZBTB20!0.95!35.86!ZBTB20;;chr9:3525727..3525828,-!p2@RFX3!0.95!20.59!RFX3;;chr15:37392593..37392607,-!p13@MEIS2!0.95!9.59!MEIS2;;chr1:54204818..54204870,-!p@chr1:54204818..54204870,-!0.95!8.52!GLIS1;;chr12:124873357..124873401,-!p1@NCOR2!0.94!93.72!NCOR2;;chr12:54410639..54410659,+!p2@HOXC4,p2@HOXC5,p2@HOXC6!0.94!7.81!HOXC5;;chr7:27205106..27205134,-!p2@HOXA9!0.94!7.81!HOXA9;;chr7:44143925..44143970,+!p1@AEBP1!0.93!175.73!AEBP1;;chr10:63809106..63809127,+!p1@ARID5B!0.93!106.50!ARID5B;;chr1:170632723..170632739,+!p8@PRRX1!0.93!7.46!PRRX1;;chr10:114710244..114710257,+!p3@TCF7L2!0.91!20.24!TCF7L2;;chr6:10415276..10415341,-!p2@TFAP2A!0.91!8.88!TFAP2A;;chr8:93074848..93074871,-!p3@RUNX1T1!0.91!7.10!RUNX1T1;;chrY:21906761..21906810,-!p2@KDM5D!0.91!7.10!KDM5D;;chr1:170632250..170632277,+!p7@PRRX1!0.91!7.10!PRRX1;;chr11:46299186..46299195,+!p3@CREB3L1!0.90!7.81!CREB3L1;;chr2:66662281..66662308,+!p1@MEIS1!0.89!24.14!MEIS1;;chr2:208031943..208031978,-!p5@KLF7!0.89!9.23!KLF7;;chr3:147111505..147111529,+!p6@ZIC1!0.89!6.75!ZIC1;;chr6:100912752..100912778,-!p2@SIM1!0.89!6.75!SIM1;;chr7:27224795..27224840,-!p2@HOXA11!0.89!6.75!HOXA11;;chr16:51185172..51185197,-!p1@SALL1!0.89!6.75!SALL1;;chr2:239756671..239756732,+!p1@TWIST2!0.88!22.01!TWIST2;;chr2:19558373..19558392,-!p1@OSR1!0.88!18.82!OSR1;;chr2:239756739..239756755,+!p2@TWIST2!0.88!11.72!TWIST2;;chr17:38256799..38256815,-!p3@NR1D1!0.87!12.07!NR1D1;;chr2:102091144..102091183,-!p2@RFX8!0.87!6.39!RFX8;;chr4:174450089..174450153,-!p2@HAND2!0.87!6.39!HAND2;;chr10:119302645..119302712,+!p3@EMX2!0.87!6.39!EMX2;;chr18:53254566..53254567,-!p8@TCF4!0.86!10.65!TCF4;;chr12:52445218..52445237,+!p1@NR4A1!0.85!82.36!NR4A1;;chr1:200379104..200379128,-!p2@ZNF281!0.85!15.62!ZNF281;;chr3:147127142..147127168,+!p1@ZIC1!0.85!6.04!ZIC1;;chr1:59249688..59249703,-!p3@JUN!0.84!37.99!JUN;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|expression_enrichment_score=chr1:197886461..197886558,+!p1@LHX9!2.67!471.45!LHX9;;chr7:19157248..19157268,-!p1@TWIST1!2.05!297.50!TWIST1;;chr12:54410664..54410684,+!p1@HOXC4,p1@HOXC5,p1@HOXC6!1.72!51.83!HOXC5;;chr20:50179368..50179392,-!p2@NFATC2!1.70!62.48!NFATC2;;chr9:132427883..132427951,+!p2@PRRX2!1.63!41.18!PRRX2;;chr15:57511609..57511651,+!p2@TCF12!1.55!56.80!TCF12;;chr15:37392534..37392562,-!p10@MEIS2!1.50!33.37!MEIS2;;chr10:28034739..28034756,-!p1@MKX!1.48!29.47!MKX;;chr8:67525443..67525459,-!p2@MYBL1!1.44!39.05!MYBL1;;chr19:45971246..45971265,+!p1@FOSB!1.42!451.22!FOSB;;chr11:46299539..46299620,+!p2@CREB3L1!1.42!41.89!CREB3L1;;chr11:46299199..46299233,+!p1@CREB3L1!1.41!123.19!CREB3L1;;chr2:176969228..176969260,+!p1@HOXD11!1.40!24.14!HOXD11;;chr2:176969097..176969109,+!p3@HOXD11!1.38!22.72!HOXD11;;chr1:170632285..170632309,+!p1@PRRX1!1.36!24.85!PRRX1;;chr1:197886421..197886432,+!p2@LHX9!1.34!20.95!LHX9;;chr6:19837592..19837621,+!p1@ID4!1.31!116.09!ID4;;chrY:21906594..21906622,-!p1@KDM5D!1.29!18.46!KDM5D;;chr2:176969179..176969226,+!p2@HOXD11!1.29!18.46!HOXD11;;chr15:37392703..37392717,-!p8@MEIS2!1.28!25.56!MEIS2;;chr15:37392616..37392638,-!p2@MEIS2!1.26!53.25!MEIS2;;chr3:147111231..147111281,+!p3@ZIC1!1.24!16.33!ZIC1;;chr15:37392724..37392757,-!p1@MEIS2!1.22!69.94!MEIS2;;chr15:37390850..37390909,-!p3@MEIS2!1.21!29.82!MEIS2;;chr10:119303078..119303169,+!p2@EMX2!1.18!14.20!EMX2;;chr5:72744594..72744609,-!p1@FOXD1!1.17!63.19!FOXD1;;chr5:2751762..2751784,-!p1@IRX2!1.17!13.85!IRX2;;chr7:27205136..27205164,-!p1@HOXA9!1.17!13.85!HOXA9;;chr14:75745523..75745537,+!p1@FOS!1.16!1601.09!FOS;;chr9:132427972..132428056,+!p1@PRRX2!1.16!17.40!PRRX2;;chr11:46316699..46316719,+!p10@CREB3L1!1.15!13.14!CREB3L1;;chr3:147111198..147111225,+!p4@ZIC1!1.14!12.78!ZIC1;;chr8:93074803..93074845,-!p1@RUNX1T1!1.13!12.43!RUNX1T1;;chr18:22932080..22932170,-!p1@ZNF521!1.11!50.41!ZNF521;;chr4:174451370..174451387,-!p1@HAND2!1.10!11.72!HAND2;;chr1:197886665..197886732,+!p3@LHX9!1.10!11.72!LHX9;;chr20:55204351..55204377,+!p1@TFAP2C!1.09!14.56!TFAP2C;;chr2:102091566..102091581,-!p1@RFX8!1.09!11.36!RFX8;;chr2:176969124..176969155,+!p5@HOXD11!1.09!11.36!HOXD11;;chr5:321810..321877,+!p1@AHRR!1.08!35.50!AHRR;;chr7:27224842..27224872,-!p1@HOXA11!1.08!11.01!HOXA11;;chr2:177001290..177001315,+!p1@HOXD3!1.07!10.65!HOXD3;;chr1:170632959..170632987,+!p4@PRRX1!1.05!11.36!PRRX1;;chr7:27192185..27192209,-!p1@HOXA3!1.04!9.94!HOXA3;;chr14:24837368..24837401,+!p1@NFATC4!1.02!22.72!NFATC4;;chr21:36260773..36260804,-!p7@RUNX1!1.02!12.78!RUNX1;;chr2:200322654..200322707,-!p2@SATB2!1.01!13.49!SATB2;;chr15:37390482..37390572,-!p7@MEIS2!1.01!12.78!MEIS2;;chr15:37392576..37392589,-!p12@MEIS2!1.01!11.36!MEIS2;;chr5:158526917..158526932,-!p1@EBF1!0.98!22.01!EBF1;;chr7:137686763..137686784,-!p5@CREB3L2!0.98!14.91!CREB3L2;;chr1:170633348..170633399,+!p2@PRRX1!0.98!11.72!PRRX1;;chr2:172950227..172950249,+!p2@DLX1!0.98!8.52!DLX1;;chr12:115121962..115121987,-!p1@TBX3!0.97!72.78!TBX3;;chr4:81118647..81118666,+!p1@PRDM8!0.97!11.01!PRDM8;;chr7:42276787..42276815,-!p1@GLI3!0.96!22.37!GLI3;;chr5:72743793..72743855,-!p4@FOXD1!0.96!9.59!FOXD1;;chr3:114343768..114343822,-!p1@ZBTB20!0.95!35.86!ZBTB20;;chr9:3525727..3525828,-!p2@RFX3!0.95!20.59!RFX3;;chr15:37392593..37392607,-!p13@MEIS2!0.95!9.59!MEIS2;;chr1:54204818..54204870,-!p@chr1:54204818..54204870,-!0.95!8.52!GLIS1;;chr12:124873357..124873401,-!p1@NCOR2!0.94!93.72!NCOR2;;chr12:54410639..54410659,+!p2@HOXC4,p2@HOXC5,p2@HOXC6!0.94!7.81!HOXC5;;chr7:27205106..27205134,-!p2@HOXA9!0.94!7.81!HOXA9;;chr7:44143925..44143970,+!p1@AEBP1!0.93!175.73!AEBP1;;chr10:63809106..63809127,+!p1@ARID5B!0.93!106.50!ARID5B;;chr1:170632723..170632739,+!p8@PRRX1!0.93!7.46!PRRX1;;chr10:114710244..114710257,+!p3@TCF7L2!0.91!20.24!TCF7L2;;chr6:10415276..10415341,-!p2@TFAP2A!0.91!8.88!TFAP2A;;chr8:93074848..93074871,-!p3@RUNX1T1!0.91!7.10!RUNX1T1;;chrY:21906761..21906810,-!p2@KDM5D!0.91!7.10!KDM5D;;chr1:170632250..170632277,+!p7@PRRX1!0.91!7.10!PRRX1;;chr11:46299186..46299195,+!p3@CREB3L1!0.90!7.81!CREB3L1;;chr2:66662281..66662308,+!p1@MEIS1!0.89!24.14!MEIS1;;chr2:208031943..208031978,-!p5@KLF7!0.89!9.23!KLF7;;chr3:147111505..147111529,+!p6@ZIC1!0.89!6.75!ZIC1;;chr6:100912752..100912778,-!p2@SIM1!0.89!6.75!SIM1;;chr7:27224795..27224840,-!p2@HOXA11!0.89!6.75!HOXA11;;chr16:51185172..51185197,-!p1@SALL1!0.89!6.75!SALL1;;chr2:239756671..239756732,+!p1@TWIST2!0.88!22.01!TWIST2;;chr2:19558373..19558392,-!p1@OSR1!0.88!18.82!OSR1;;chr2:239756739..239756755,+!p2@TWIST2!0.88!11.72!TWIST2;;chr17:38256799..38256815,-!p3@NR1D1!0.87!12.07!NR1D1;;chr2:102091144..102091183,-!p2@RFX8!0.87!6.39!RFX8;;chr4:174450089..174450153,-!p2@HAND2!0.87!6.39!HAND2;;chr10:119302645..119302712,+!p3@EMX2!0.87!6.39!EMX2;;chr18:53254566..53254567,-!p8@TCF4!0.86!10.65!TCF4;;chr12:52445218..52445237,+!p1@NR4A1!0.85!82.36!NR4A1;;chr1:200379104..200379128,-!p2@ZNF281!0.85!15.62!ZNF281;;chr3:147127142..147127168,+!p1@ZIC1!0.85!6.04!ZIC1;;chr1:59249688..59249703,-!p3@JUN!0.84!37.99!JUN;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Line 38: Line 41:
|fonse_treatment_closure=
|fonse_treatment_closure=
|has_quality=
|has_quality=
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.fractionation.hCAGE/Fibroblast%2520-%2520skin%2520spinal%2520muscular%2520atrophy%252c%2520donor3%2520%2528nuclear%2520fraction%2529.CNhs12398.14305-155C3.hg19.nobarcode.bam
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.fractionation.hCAGE/Fibroblast%2520-%2520skin%2520spinal%2520muscular%2520atrophy%252c%2520donor3%2520%2528nuclear%2520fraction%2529.CNhs12398.14305-155C3.hg19.ctss.bed.gz
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.fractionation.hCAGE/Fibroblast%2520-%2520skin%2520spinal%2520muscular%2520atrophy%252c%2520donor3%2520%2528nuclear%2520fraction%2529.CNhs12398.14305-155C3.hg19.nobarcode.rdna.fa.gz
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.fractionation.hCAGE/Fibroblast%2520-%2520skin%2520spinal%2520muscular%2520atrophy%252c%2520donor3%2520%2528nuclear%2520fraction%2529.CNhs12398.14305-155C3.hg38.nobarcode.bam
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.fractionation.hCAGE/Fibroblast%2520-%2520skin%2520spinal%2520muscular%2520atrophy%252c%2520donor3%2520%2528nuclear%2520fraction%2529.CNhs12398.14305-155C3.hg38.nobarcode.ctss.bed.gz
|id=FF:14305-155C3
|id=FF:14305-155C3
|is_a=FF:0000670
|is_a=FF:0000670
|is_obsolete=
|is_obsolete=
|library_id=CNhs12398
|library_id_phase_based=2:CNhs12398
|microRNAs=
|microRNAs_nn=
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;14305
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;14305
|name=Fibroblast - skin spinal muscular atrophy, donor3 (nuclear fraction)
|name=Fibroblast - skin spinal muscular atrophy, donor3 (nuclear fraction)
|namespace=FANTOM5
|namespace=FANTOM5
Line 46: Line 60:
|profile_cagescan=,,,
|profile_cagescan=,,,
|profile_hcage=CNhs12398,LSID914,release011,COMPLETED
|profile_hcage=CNhs12398,LSID914,release011,COMPLETED
|profile_rnaseq=,,,
|profile_rnaseq=
|profile_srnaseq=,,,
|profile_srnaseq=,,,
|refex=http://refex.dbcls.jp/genelist.php?lang
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|sample_cell_line=
Line 84: Line 100:
|top_motifs=ALX4:2.20465791481;XBP1:2.19048019873;NKX3-1:2.19031216361;HIF1A:2.04231703583;EN1,2:1.92218390016;HOX{A5,B5}:1.84206932302;HBP1_HMGB_SSRP1_UBTF:1.6789065526;MYBL2:1.66785586818;KLF4:1.61903298806;SRF:1.61104714829;HSF1,2:1.60837138589;FOXL1:1.57370600676;TEAD1:1.56012979006;UFEwm:1.55419287142;TAL1_TCF{3,4,12}:1.52589102221;NR3C1:1.52323897571;PRDM1:1.49881895694;NFE2L1:1.48341945053;GZF1:1.48034519451;ZNF384:1.46689196964;MAFB:1.40532369485;MZF1:1.40092234166;RXR{A,B,G}:1.37171652651;ESR1:1.34231411762;RXRA_VDR{dimer}:1.32393684966;HMX1:1.31886258015;GFI1B:1.28068745809;GATA4:1.26470681663;NKX3-2:1.24647168892;GCM1,2:1.23898788398;SOX17:1.23281553799;TP53:1.19839400872;ZNF238:1.17953699265;EBF1:1.16919818741;EVI1:1.14904720538;GTF2A1,2:1.14269721358;AHR_ARNT_ARNT2:1.13828642967;EP300:1.13798445766;GFI1:1.08698180559;MTE{core}:1.06700192237;MAZ:1.05855417033;TEF:1.04463709251;HMGA1,2:1.02291492571;ATF6:1.00134898377;GTF2I:0.942301373131;ZIC1..3:0.913501039265;TOPORS:0.899579364986;NANOG{mouse}:0.893728431587;ZBTB6:0.855330691056;RFX1:0.854556110446;SMAD1..7,9:0.814347699416;TFAP2{A,C}:0.776309851601;BPTF:0.745544464999;TLX1..3_NFIC{dimer}:0.741398186883;TFAP4:0.739032176264;TFDP1:0.691273810633;SPZ1:0.65904248053;FOXD3:0.611822961573;NKX2-2,8:0.592161708188;NFATC1..3:0.575384587717;ARID5B:0.555013510991;FOXN1:0.532356673984;TFCP2:0.522136675028;TBX4,5:0.500919196829;NFE2L2:0.480089866394;HOX{A4,D4}:0.471354446638;GLI1..3:0.44607305637;AIRE:0.44422619497;BACH2:0.43885432151;PPARG:0.433414790218;MYB:0.424711615934;HLF:0.407367398473;MEF2{A,B,C,D}:0.373275930571;CREB1:0.353130565608;POU5F1:0.34742360415;IKZF1:0.328878286647;MED-1{core}:0.320167170539;HOXA9_MEIS1:0.299369072765;NFE2:0.281967556225;SOX2:0.28066713344;PATZ1:0.277526185669;NKX2-1,4:0.275935754983;PAX8:0.260806781303;CDC5L:0.236892442943;XCPE1{core}:0.233244434568;NRF1:0.225348174601;RREB1:0.213598800695;FOS_FOS{B,L1}_JUN{B,D}:0.209581999777;POU3F1..4:0.198805641769;PAX3,7:0.16408433639;ELK1,4_GABP{A,B1}:0.16356125594;E2F1..5:0.158022839553;MYFfamily:0.138339703084;LHX3,4:0.134494483447;PDX1:0.133163612187;PAX5:0.129451268152;PAX2:0.126317380533;FOX{D1,D2}:0.102880811732;TBP:0.0874868628475;ATF4:0.0766211022376;TLX2:0.0721319707126;ATF5_CREB3:0.0669060380484;HES1:0.0589890917196;NFIX:0.0505029822702;TFAP2B:0.0397508279629;ZNF143:0.029702249351;CRX:0.0278792388116;LEF1_TCF7_TCF7L1,2:0.0183710701378;RUNX1..3:0.017318723986;STAT1,3:0.0134127730607;HIC1:0.00554410305103;NFY{A,B,C}:0.00498376349141;SP1:0.00412814029585;ZFP161:-0.003101379428;T:-0.00716093046263;FOSL2:-0.0146456124928;DMAP1_NCOR{1,2}_SMARC:-0.0344366221896;PRRX1,2:-0.0634743793;SOX5:-0.0889876991522;POU1F1:-0.104676472594;YY1:-0.112653441596;NHLH1,2:-0.115196015486;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.15421617413;DBP:-0.16827741709;JUN:-0.193010535776;ZBTB16:-0.200077814274;FOXA2:-0.208192908543;ZNF148:-0.214485371358;NR1H4:-0.22283064358;CEBPA,B_DDIT3:-0.226940319007;ELF1,2,4:-0.233987523172;HAND1,2:-0.242248812565;IRF1,2:-0.255927828217;FOX{I1,J2}:-0.25603686206;FOXP1:-0.258975669314;RFX2..5_RFXANK_RFXAP:-0.290515958911;STAT2,4,6:-0.318562532986;HNF1A:-0.337209091486;CUX2:-0.337954700092;EGR1..3:-0.3698622669;NKX2-3_NKX2-5:-0.421585043234;SPI1:-0.423580101539;PAX1,9:-0.426735398615;SPIB:-0.430115085008;ONECUT1,2:-0.44228056684;SREBF1,2:-0.454217737834;HNF4A_NR2F1,2:-0.466672952069;ZNF423:-0.47612053366;bHLH_family:-0.491613371379;ETS1,2:-0.493676314206;TGIF1:-0.498009370864;POU6F1:-0.506429148647;HOX{A6,A7,B6,B7}:-0.524101445898;NFKB1_REL_RELA:-0.58937356109;AR:-0.600322082452;PAX4:-0.618889171571;SOX{8,9,10}:-0.620820256779;PBX1:-0.646877792345;FOXP3:-0.673451626032;NR6A1:-0.690871725264;REST:-0.757476333984;ADNP_IRX_SIX_ZHX:-0.765543456407;ATF2:-0.773815606943;FOXO1,3,4:-0.783464499788;VSX1,2:-0.785186363105;IKZF2:-0.907422975706;NANOG:-0.925069811282;POU2F1..3:-0.946511066387;STAT5{A,B}:-0.958489477047;MTF1:-0.961091321651;RBPJ:-0.963365255294;OCT4_SOX2{dimer}:-1.00737037552;NKX6-1,2:-1.01465845574;ALX1:-1.02817387984;NFIL3:-1.02825142244;IRF7:-1.02872465173;SNAI1..3:-1.10961808388;PITX1..3:-1.1096937091;BREu{core}:-1.11788146157;CDX1,2,4:-1.14965879889;GATA6:-1.21281755528;RXR{A,B,G}_{NR1H2,PPAR}dimers:-1.21496788738;ZEB1:-1.26276915339;FOXM1:-1.30081479347;LMO2:-1.38484735233;MYOD1:-1.42474164951;NR5A1,2:-1.47203245644;RORA:-1.55382613981;PAX6:-1.58087559376;FOX{F1,F2,J1}:-1.7414480631;ESRRA:-1.77500998305;FOXQ1:-1.89568473862
|top_motifs=ALX4:2.20465791481;XBP1:2.19048019873;NKX3-1:2.19031216361;HIF1A:2.04231703583;EN1,2:1.92218390016;HOX{A5,B5}:1.84206932302;HBP1_HMGB_SSRP1_UBTF:1.6789065526;MYBL2:1.66785586818;KLF4:1.61903298806;SRF:1.61104714829;HSF1,2:1.60837138589;FOXL1:1.57370600676;TEAD1:1.56012979006;UFEwm:1.55419287142;TAL1_TCF{3,4,12}:1.52589102221;NR3C1:1.52323897571;PRDM1:1.49881895694;NFE2L1:1.48341945053;GZF1:1.48034519451;ZNF384:1.46689196964;MAFB:1.40532369485;MZF1:1.40092234166;RXR{A,B,G}:1.37171652651;ESR1:1.34231411762;RXRA_VDR{dimer}:1.32393684966;HMX1:1.31886258015;GFI1B:1.28068745809;GATA4:1.26470681663;NKX3-2:1.24647168892;GCM1,2:1.23898788398;SOX17:1.23281553799;TP53:1.19839400872;ZNF238:1.17953699265;EBF1:1.16919818741;EVI1:1.14904720538;GTF2A1,2:1.14269721358;AHR_ARNT_ARNT2:1.13828642967;EP300:1.13798445766;GFI1:1.08698180559;MTE{core}:1.06700192237;MAZ:1.05855417033;TEF:1.04463709251;HMGA1,2:1.02291492571;ATF6:1.00134898377;GTF2I:0.942301373131;ZIC1..3:0.913501039265;TOPORS:0.899579364986;NANOG{mouse}:0.893728431587;ZBTB6:0.855330691056;RFX1:0.854556110446;SMAD1..7,9:0.814347699416;TFAP2{A,C}:0.776309851601;BPTF:0.745544464999;TLX1..3_NFIC{dimer}:0.741398186883;TFAP4:0.739032176264;TFDP1:0.691273810633;SPZ1:0.65904248053;FOXD3:0.611822961573;NKX2-2,8:0.592161708188;NFATC1..3:0.575384587717;ARID5B:0.555013510991;FOXN1:0.532356673984;TFCP2:0.522136675028;TBX4,5:0.500919196829;NFE2L2:0.480089866394;HOX{A4,D4}:0.471354446638;GLI1..3:0.44607305637;AIRE:0.44422619497;BACH2:0.43885432151;PPARG:0.433414790218;MYB:0.424711615934;HLF:0.407367398473;MEF2{A,B,C,D}:0.373275930571;CREB1:0.353130565608;POU5F1:0.34742360415;IKZF1:0.328878286647;MED-1{core}:0.320167170539;HOXA9_MEIS1:0.299369072765;NFE2:0.281967556225;SOX2:0.28066713344;PATZ1:0.277526185669;NKX2-1,4:0.275935754983;PAX8:0.260806781303;CDC5L:0.236892442943;XCPE1{core}:0.233244434568;NRF1:0.225348174601;RREB1:0.213598800695;FOS_FOS{B,L1}_JUN{B,D}:0.209581999777;POU3F1..4:0.198805641769;PAX3,7:0.16408433639;ELK1,4_GABP{A,B1}:0.16356125594;E2F1..5:0.158022839553;MYFfamily:0.138339703084;LHX3,4:0.134494483447;PDX1:0.133163612187;PAX5:0.129451268152;PAX2:0.126317380533;FOX{D1,D2}:0.102880811732;TBP:0.0874868628475;ATF4:0.0766211022376;TLX2:0.0721319707126;ATF5_CREB3:0.0669060380484;HES1:0.0589890917196;NFIX:0.0505029822702;TFAP2B:0.0397508279629;ZNF143:0.029702249351;CRX:0.0278792388116;LEF1_TCF7_TCF7L1,2:0.0183710701378;RUNX1..3:0.017318723986;STAT1,3:0.0134127730607;HIC1:0.00554410305103;NFY{A,B,C}:0.00498376349141;SP1:0.00412814029585;ZFP161:-0.003101379428;T:-0.00716093046263;FOSL2:-0.0146456124928;DMAP1_NCOR{1,2}_SMARC:-0.0344366221896;PRRX1,2:-0.0634743793;SOX5:-0.0889876991522;POU1F1:-0.104676472594;YY1:-0.112653441596;NHLH1,2:-0.115196015486;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.15421617413;DBP:-0.16827741709;JUN:-0.193010535776;ZBTB16:-0.200077814274;FOXA2:-0.208192908543;ZNF148:-0.214485371358;NR1H4:-0.22283064358;CEBPA,B_DDIT3:-0.226940319007;ELF1,2,4:-0.233987523172;HAND1,2:-0.242248812565;IRF1,2:-0.255927828217;FOX{I1,J2}:-0.25603686206;FOXP1:-0.258975669314;RFX2..5_RFXANK_RFXAP:-0.290515958911;STAT2,4,6:-0.318562532986;HNF1A:-0.337209091486;CUX2:-0.337954700092;EGR1..3:-0.3698622669;NKX2-3_NKX2-5:-0.421585043234;SPI1:-0.423580101539;PAX1,9:-0.426735398615;SPIB:-0.430115085008;ONECUT1,2:-0.44228056684;SREBF1,2:-0.454217737834;HNF4A_NR2F1,2:-0.466672952069;ZNF423:-0.47612053366;bHLH_family:-0.491613371379;ETS1,2:-0.493676314206;TGIF1:-0.498009370864;POU6F1:-0.506429148647;HOX{A6,A7,B6,B7}:-0.524101445898;NFKB1_REL_RELA:-0.58937356109;AR:-0.600322082452;PAX4:-0.618889171571;SOX{8,9,10}:-0.620820256779;PBX1:-0.646877792345;FOXP3:-0.673451626032;NR6A1:-0.690871725264;REST:-0.757476333984;ADNP_IRX_SIX_ZHX:-0.765543456407;ATF2:-0.773815606943;FOXO1,3,4:-0.783464499788;VSX1,2:-0.785186363105;IKZF2:-0.907422975706;NANOG:-0.925069811282;POU2F1..3:-0.946511066387;STAT5{A,B}:-0.958489477047;MTF1:-0.961091321651;RBPJ:-0.963365255294;OCT4_SOX2{dimer}:-1.00737037552;NKX6-1,2:-1.01465845574;ALX1:-1.02817387984;NFIL3:-1.02825142244;IRF7:-1.02872465173;SNAI1..3:-1.10961808388;PITX1..3:-1.1096937091;BREu{core}:-1.11788146157;CDX1,2,4:-1.14965879889;GATA6:-1.21281755528;RXR{A,B,G}_{NR1H2,PPAR}dimers:-1.21496788738;ZEB1:-1.26276915339;FOXM1:-1.30081479347;LMO2:-1.38484735233;MYOD1:-1.42474164951;NR5A1,2:-1.47203245644;RORA:-1.55382613981;PAX6:-1.58087559376;FOX{F1,F2,J1}:-1.7414480631;ESRRA:-1.77500998305;FOXQ1:-1.89568473862
|xref=
|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:14305-155C3;search_select_hide=table117:FF:14305-155C3
}}
}}

Latest revision as of 19:06, 4 June 2020

Name:Fibroblast - skin spinal muscular atrophy, donor3 (nuclear fraction)
Species:Human (Homo sapiens)
Library ID:CNhs12398
Sample type:fractionations and perturbations
Genomic View: UCSC
RefEX:Specific genes
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissueskin
dev stageNA
sexM
age7 month old child
cell typefibroblast
cell lineNA
companyCoriell
collaborationFANTOM5 OSC CORE (contact: Al Forrest)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot numberNA
catalog numbercustom
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-TRIzol-ethanol-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00005618
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs12398 CAGE DRX008040 DRR008912
Accession ID Hg19

Library idBAMCTSS
CNhs12398 DRZ000337 DRZ001722
Accession ID Hg38

Library idBAMCTSS
CNhs12398 DRZ011687 DRZ013072
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis0.261
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma0.277
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0.869
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD190.126
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle0.327
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0.659
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed-0.174
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte-0.117
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0.776
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0.132
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus-0.199
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40.106
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0.443
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0.584
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD80.0155
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth-0.0976
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0.0711
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40.116
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small0.162
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0.233
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0.721
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0.233
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte1.412
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0.542
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0.927
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0.995
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs12398

Jaspar motifP-value
MA0002.20.0969
MA0003.10.48
MA0004.10.0276
MA0006.10.607
MA0007.10.156
MA0009.10.464
MA0014.10.373
MA0017.10.00408
MA0018.20.53
MA0019.10.491
MA0024.10.232
MA0025.10.0174
MA0027.10.844
MA0028.10.208
MA0029.10.802
MA0030.10.154
MA0031.10.0834
MA0035.28.05032e-5
MA0038.10.934
MA0039.20.023
MA0040.10.594
MA0041.10.797
MA0042.10.852
MA0043.10.122
MA0046.10.359
MA0047.20.844
MA0048.10.00683
MA0050.10.00112
MA0051.10.00315
MA0052.10.317
MA0055.10.6
MA0057.10.651
MA0058.10.00855
MA0059.10.0357
MA0060.10.239
MA0061.16.06367e-4
MA0062.20.0187
MA0065.20.00161
MA0066.10.756
MA0067.10.855
MA0068.10.575
MA0069.10.0129
MA0070.10.319
MA0071.10.201
MA0072.10.257
MA0073.10.71
MA0074.10.46
MA0076.10.722
MA0077.10.233
MA0078.10.627
MA0079.20.123
MA0080.21.35004e-8
MA0081.10.0377
MA0083.13.7531e-4
MA0084.10.639
MA0087.10.437
MA0088.10.208
MA0090.11.7326e-4
MA0091.10.855
MA0092.10.717
MA0093.10.0461
MA0099.20.941
MA0100.10.432
MA0101.19.23601e-5
MA0102.20.193
MA0103.17.02537e-6
MA0104.22.46938e-4
MA0105.10.0403
MA0106.10.216
MA0107.11.59764e-4
MA0108.20.106
MA0111.10.138
MA0112.20.538
MA0113.10.492
MA0114.10.00152
MA0115.10.0334
MA0116.10.502
MA0117.10.404
MA0119.10.726
MA0122.10.268
MA0124.10.0806
MA0125.10.149
MA0131.10.754
MA0135.10.484
MA0136.12.74773e-7
MA0137.20.111
MA0138.20.653
MA0139.10.408
MA0140.10.0123
MA0141.10.00466
MA0142.10.1
MA0143.10.996
MA0144.10.196
MA0145.10.925
MA0146.10.0688
MA0147.10.0044
MA0148.10.212
MA0149.10.152
MA0150.10.0932
MA0152.10.212
MA0153.10.991
MA0154.10.598
MA0155.10.724
MA0156.10.00384
MA0157.10.123
MA0159.10.176
MA0160.14.73799e-4
MA0162.10.0318
MA0163.10.537
MA0164.10.59
MA0258.10.374
MA0259.10.27



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs12398

Novel motifP-value
10.0768
100.376
1000.486
1010.309
1020.0758
1030.313
1040.929
1050.529
1060.126
1070.975
1080.919
1090.013
110.129
1100.624
1110.0703
1120.602
1130.0163
1140.322
1150.262
1160.779
1170.105
1180.414
1190.307
120.937
1200.754
1210.838
1220.0595
1230.00104
1240.063
1250.704
1260.233
1270.516
1280.188
1290.107
130.619
1300.991
1310.399
1320.623
1330.328
1340.923
1350.837
1360.131
1370.918
1380.533
1390.108
140.447
1400.608
1410.214
1420.984
1430.667
1440.719
1450.928
1460.142
1470.158
1480.11
1490.266
150.0534
1500.608
1510.131
1520.479
1530.648
1540.482
1550.0167
1560.589
1570.34
1580.108
1590.715
160.806
1600.257
1610.022
1620.581
1630.382
1640.91
1650.703
1660.00483
1670.314
1680.991
1690.853
170.719
180.759
190.257
20.897
200.418
210.502
220.825
230.801
240.37
250.126
260.896
270.488
280.688
290.958
30.445
300.569
310.667
328.05793e-7
330.215
340.611
350.515
360.0245
370.72
380.278
390.978
40.35
400.0466
410.78
420.286
430.451
440.373
450.492
460.499
470.128
480.332
490.0708
50.734
500.799
510.466
520.645
530.323
540.486
550.533
560.294
570.994
580.119
590.73
60.872
600.309
610.144
620.0841
630.565
640.207
650.473
660.43
670.813
680.866
690.676
70.0684
700.0748
710.804
720.271
730.448
740.323
750.0754
760.534
770.898
780.0126
790.149
80.181
800.551
810.38
820.725
830.0539
840.362
850.683
860.521
870.486
880.721
890.923
90.969
900.237
910.8
920.429
930.641
940.556
950.016
960.735
970.531
980.0486
990.521



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs12398


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0002320 (connective tissue cell)
0002371 (somatic cell)
0000255 (eukaryotic cell)
0000057 (fibroblast)
0002620 (skin fibroblast)

UBERON: Anatomy
0000468 (multi-cellular organism)
0002097 (skin of body)
0002199 (integument)
0002384 (connective tissue)
0000479 (tissue)
0000062 (organ)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0003102 (surface structure)
0002416 (integumental system)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000057 (fibroblast sample)
0000250 (human fibroblast of skin sample)
0000001 (sample)
0000408 (cellular fractionation sample)
0000350 (experimentally modified sample)
0000251 (human fibroblast - skin spinal muscular atrophy sample)
0000406 (nuclear fraction sample)
0000670 (human Fibroblast - skin spinal muscular atrophy, nuclear fraction sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000134 (mesenchymal cell)

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