FFCP PHASE1:Hg19::chr10:17270214..17270247,+: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr10:17270214..17270247,+
|short_description=p5@VIM
|description=CAGE_peak_5_at_VIM_5end
|association_with_transcript=-10bp_to_ENST00000478317,ENST00000544301,...") |
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(11 intermediate revisions by the same user not shown) | |||
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=7431 | |EntrezGene=7431 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=12692 | |HGNC=12692 | ||
|TSSclassifier=strong | |||
|UniProt=P08670 | |UniProt=P08670 | ||
|association_with_transcript=-10bp_to_ENST00000478317,ENST00000544301,NM_003380,uc001iou.2_5end | |||
|cluster_id=chr10:17270214..17270247,+ | |||
|coexpression_cluster_id=C168 | |||
|description=CAGE_peak_5_at_VIM_5end | |||
|id=chr10:17270214..17270247,+ | |||
|ontology_enrichment_celltype=CL:0002057!1.54e-29!42;CL:0000738!6.26e-27!140;CL:0000860!2.61e-26!45;CL:0000766!3.01e-26!76;CL:0000557!3.14e-26!71;CL:0000839!6.43e-23!70;CL:0002009!8.05e-23!65;CL:0002031!1.73e-22!124;CL:0002194!1.43e-21!63;CL:0000576!1.43e-21!63;CL:0000040!1.43e-21!63;CL:0000559!1.43e-21!63;CL:0002087!1.86e-21!119;CL:0002320!1.28e-17!365;CL:0000134!1.68e-17!358;CL:0000988!2.04e-17!182;CL:0000037!2.70e-17!172;CL:0000566!2.70e-17!172;CL:0000219!1.60e-15!390;CL:0002032!6.67e-15!165;CL:0000837!6.67e-15!165;CL:0000763!4.80e-13!112;CL:0000049!4.80e-13!112;CL:0000048!6.88e-13!430;CL:0000034!6.10e-12!444;CL:0000723!1.25e-11!436;CL:0002393!5.49e-07!9;CL:0002397!5.49e-07!9 | |||
|ontology_enrichment_celltype_v019=CL:0000860;3.03e-37;33!CL:0002057;3.03e-37;33!CL:0000576;2.95e-26;48!CL:0000473;3.97e-26;39!CL:0000234;3.97e-26;39!CL:0000766;1.14e-21;69!CL:0002087;1.14e-09;104!CL:0000738;8.19e-09;136!CL:0002393;4.63e-08;6!CL:0002397;4.63e-08;6!CL:0000763;8.35e-08;100!CL:0000097;8.36e-07;5 | |||
|ontology_enrichment_celltype_v019_2=CL:0000860,9.31e-51,42;CL:0002057,9.31e-51,42;CL:0000766,2.63e-46,72;CL:0000557,4.13e-45,67;CL:0000473,4.23e-44,48;CL:0000234,4.23e-44,48;CL:0000839,2.38e-40,66;CL:0002009,4.72e-39,61;CL:0000738,8.54e-38,136;CL:0002194,7.96e-37,59;CL:0000576,7.96e-37,59;CL:0000040,7.96e-37,59;CL:0000559,7.96e-37,59;CL:0002031,2.89e-31,120;CL:0002087,5.11e-28,115;CL:0000763,2.14e-27,108;CL:0000049,2.14e-27,108;CL:0000037,2.96e-27,168;CL:0000988,1.67e-24,177;CL:0002032,1.31e-23,161;CL:0000837,1.31e-23,161;CL:0000134,5.30e-18,354;CL:0002320,1.52e-17,361;CL:0000219,1.90e-15,386;CL:0000048,1.09e-11,427;CL:0000034,1.17e-11,441;CL:0002393,4.43e-11,9;CL:0002397,4.43e-11,9;CL:0000723,4.55e-11,433;CL:0000097,5.34e-07,5;CL:0002028,5.34e-07,5 | |||
|ontology_enrichment_development_v019=CL:0002057;1.97e-36;42!CL:0000049;7.71e-08;108 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002193!3.96e-29!112;UBERON:0002390!4.92e-28!102;UBERON:0003061!4.92e-28!102;UBERON:0002371!1.91e-24!80;UBERON:0001474!1.46e-23!86;UBERON:0004765!1.12e-20!101;UBERON:0001434!1.12e-20!101;UBERON:0002405!1.63e-19!115;UBERON:0002384!5.79e-18!375;UBERON:0003081!5.85e-15!216;UBERON:0002204!5.58e-10!167 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002390,2.74e-40,98;UBERON:0003061,2.74e-40,98;UBERON:0002371,4.66e-39,76;UBERON:0001474,2.16e-37,82;UBERON:0002193,1.95e-36,108;UBERON:0004765,1.74e-33,90;UBERON:0002405,1.21e-31,93;UBERON:0001434,2.68e-30,100;UBERON:0003081,7.77e-21,203;UBERON:0002384,3.40e-17,371;UBERON:0002204,3.81e-13,167;UBERON:0000926,2.32e-10,315;UBERON:0004120,2.32e-10,315;UBERON:0006603,2.32e-10,315 | |||
|phase1_expression=0,0.428201047781966,0.281908808191942,0,0,0,0,0.631719873426831,0,0,0,0,0,0.618831764800233,0,0,0,0,0,0.492484232307152,0.408001382488506,1.88072832886853,0.85870796139317,1.64249310087461,1.88313959392204,0.382067028739756,0.328402357799783,0,15.3412067971073,8.44424675813868,17.0297735647684,0,0,0,0,0.142169232487422,4.11040615068786,9.41792194504192,8.42286679374595,16.058804432973,0,0.647787332037959,0.515151135268373,13.5220362064995,13.6035339727971,13.8272914877055,17.8970358417377,17.6802191849385,19.8212077372866,21.001544639517,17.4189280439788,18.6820961611982,25.8559260552464,18.0735711403471,17.6054432572644,13.1769637679823,13.6453075028923,14.8317499733756,34.2813959455411,35.6231220054464,43.4749245543348,10.8850929061616,11.9678194572979,12.3605177654481,49.9159890441165,43.6886623012178,38.6149794377257,19.597395890026,13.037072960505,24.9767171410884,50.2481587185696,57.0830335780725,43.3553470794012,6.5489138756702,5.31510749912609,9.64429769338529,3.03287304095537,6.30742949934327,5.94684670779196,9.12040779971995,3.9783335439818,5.47992461293902,0,0.546138611262131,0,2.56038133539904,0,0.574752439954483,0.661044872784862,0,0.569212969109448,1.17447437874188,0.764546456250458,5.28685314316103,2.24203425192614,1.58030450865046,3.14735632182133,5.10913991573914,6.16804496998528,0.167186495390678,0.651844533267181,2.36723902867367,1.94826728407911,0.779873198196215,0.883817722424512,0.443067789167242,1.89562704635511,0.384273959177026,0.390178042679635,0.822189523018381,1.65810010671509,0.579606171470105,4.74517002118593,2.1403266247177,1.04535523804977,0.339928028092699,4.98186641682498,3.4362744548263,3.03623630423403,0.318565414324097,0,0.950452044448374,1.05402583354441,0.511946444617674,1.24930726552346,0.236777252044017,0.821127996921047,5.44338206706778,4.27904313253612,5.64815175142916,0,0,0,1.0843174571537,0,0.289693037921647,0,0,1.22895262313288,0.665188192387692,2.3715392137144,0.458426764241994,0,0,2.92092654289215,1.74129737299267,2.26028532882071,0.953962497221368,2.28797964312051,1.85728750664782,1.78886166630035,1.72046919021225,3.47140501607594,2.82653970962005,0.838998872419812,1.6507082516404,1.67195973229448,1.03366703667732,0.71153252537342,1.00416183829401,4.02829317109147,0,2.4406205754817,1.10298924103761,1.62028389576352,0.17859945656816,0.22452937262617,0.225222960966644,1.53316637465883,0,0.183201743930407,0,3.87780264148325,0,0.496971951695318,0.379891534993739,0.926864265692532,0.286836620748814,1.06400514659507,0,1.06748995729705,0.24666754841716,0.622422070799533,0.134710672069688,0.163461903113459,0.605429710579726,0,0,1.24864030732128,1.1409436430889,0.597794722207204,0.587172493218824,0.485618833104395,1.12360645361799,1.02077085627447,0.982674538494144,0.103325781175765,2.37600571456411,1.23633464639278,0,0.718618141816238,1.0100166837244,0.250237039743928,3.04770527032601,0.877955241761676,0,0.300476117813194,0.567160915800105,1.97328599257748,0.213557388818567,0.635795703478686,2.10063767259082,0.824420233907511,0.515281080091258,1.11670113798954,11.3080142601648,3.50773218580315,0,0.184099797284599,1.2931684545505,1.77504796258307,1.71278566986988,1.86516651541536,0,0,0,0,0,0.464775771478074,0.10366105501537,0,0.36497735907583,0,1.92972281457866,1.38134921352481,0.464367928031979,0,0.236613600079688,0,0.241011029883482,0,0.217879444092406,0,0.404493924480493,0,0,0,1.40241773803446,0,1.47008711385542,0,0.982827216677626,0,0.441463099414651,0,0.343135620597051,0,0,0,0,0.651616610620649,0,1.44331342025273,1.62302566965108,1.29149563659404,0.866198686566443,0.925971025153221,0.380508304469197,0,0,0.492434012174795,0.702012795417713,0.148631162288728,0,0,0,0,0,0,2.95597942737566,1.76096868026452,149.068915073815,54.7655822984453,134.448191599095,0.253991577168676,0,1.17217447210047,0,0.411309970813294,0,0,0.112131084345361,0,0,0.129271715757778,3.57656445851882,0.845302752556,0.797814349754612,0,0.514414748524284,0,0.799266537048298,0.285955987316295,0,0,0.325736184293735,0.710783897485092,0,0.602878754119172,0,0.099972991182057,0,1.50677127429638,0,0,0,0,0.144781306667579,0.410952645100767,0.537182889719687,0,4.53170748464433,4.52817907204986,4.62034930607094,1.27047312111232,0,0,0.167516265334349,0,1.49801404789436,0,2.90090859405225,1.71768088406796,0,0,0.415941723061614,0.535286966391485,0,0.468565659970853,0.300946099727719,0,0,0,1.10621501125022,0.60818530127658,0.979005787313703,0.686286847621712,2.68798433959754,7.11856862701436,3.52200940751366,0.303127571446259,0,0,0,0.153461973288062,0.561320188866147,0,0.511707249066704,0.160853921143607,0,1.69630663182921,1.06537035187876,1.39616165223476,0.519254429183621,3.48631135379878,0,0,0,0,0.182091168006717,0.524497659837696,0.451199612907412,0.15403067420883,0,0,0,1.13733384070897,0.170093705276516,0,0,0.812839312631559,0.501689773854853,0,0,0.447749509444357,0,0,0,0,0,0.412164046590889,0.0915694648183434,0,0,0,0,0.290012154876366,0,0.15350367472613,0,0,0.290033387828457,0.0852266274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| ||
|short_description=p5@VIM | |||
}} | }} |
Latest revision as of 10:15, 17 September 2015
Short description: | p5@VIM |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_5_at_VIM_5end |
Coexpression cluster: | C168_Mast_CD14_immature_Basophils_Eosinophils_CD34_Peripheral |
Association with transcript: | -10bp_to_ENST00000478317, ENST00000544301, NM_003380, uc001iou.2_5end |
EntrezGene: | VIM |
HGNC: | 12692 |
UniProt: | P08670 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
hematopoietic system | 2.74e-40 | 98 |
blood island | 2.74e-40 | 98 |
bone marrow | 4.66e-39 | 76 |
bone element | 2.16e-37 | 82 |
hemolymphoid system | 1.95e-36 | 108 |
skeletal element | 1.74e-33 | 90 |
immune system | 1.21e-31 | 93 |
skeletal system | 2.68e-30 | 100 |
lateral plate mesoderm | 7.77e-21 | 203 |
connective tissue | 3.40e-17 | 371 |
musculoskeletal system | 3.81e-13 | 167 |
mesoderm | 2.32e-10 | 315 |
mesoderm-derived structure | 2.32e-10 | 315 |
presumptive mesoderm | 2.32e-10 | 315 |