FFCP PHASE1:Hg19::chr12:6579833..6579850,-: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr12:6579833..6579850,-
|short_description=p1@VAMP1
|description=CAGE_peak_1_at_VAMP1_5end
|association_with_transcript=0bp_to_ENST00000355479,ENST00000396308,...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=6843 | |EntrezGene=6843 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=12642 | |HGNC=12642 | ||
|TSSclassifier=strong | |||
|UniProt=B4DZX9,P23763,F5H787 | |UniProt=B4DZX9,P23763,F5H787 | ||
|association_with_transcript=0bp_to_ENST00000355479,ENST00000396308,ENST00000396943,ENST00000535927,ENST00000539047,NM_014231,NM_016830,NM_199245,uc001qoj.2,uc001qok.2,uc001qol.2_5end | |||
|cluster_id=chr12:6579833..6579850,- | |||
|coexpression_cluster_id=C247 | |||
|description=CAGE_peak_1_at_VAMP1_5end | |||
|id=chr12:6579833..6579850,- | |||
|ontology_enrichment_celltype=CL:0000738!1.90e-25!140;CL:0000037!4.32e-24!172;CL:0000566!4.32e-24!172;CL:0002032!6.40e-22!165;CL:0000837!6.40e-22!165;CL:0000988!7.22e-22!182;CL:0002087!8.35e-20!119;CL:0002031!2.06e-19!124;CL:0000542!4.83e-16!53;CL:0000051!4.83e-16!53;CL:0000838!6.36e-16!52;CL:0000860!2.31e-10!45;CL:0002057!4.89e-10!42;CL:0000084!1.82e-08!25;CL:0000827!1.82e-08!25;CL:0000763!2.31e-08!112;CL:0000049!2.31e-08!112;CL:0000766!2.79e-08!76;CL:0000791!7.11e-08!18;CL:0000789!7.11e-08!18;CL:0002420!7.11e-08!18;CL:0002419!7.11e-08!18;CL:0000790!7.11e-08!18;CL:0000945!3.40e-07!24;CL:0000826!3.40e-07!24 | |||
|ontology_enrichment_celltype_v019=CL:0000860;3.67e-12;33!CL:0002057;3.67e-12;33!CL:0000542;5.59e-10;53!CL:0000084;2.03e-08;25!CL:0000791;6.82e-08;18!CL:0000789;6.82e-08;18!CL:0002419;6.82e-08;18!CL:0002087;6.85e-08;104!CL:0000945;3.25e-07;24 | |||
|ontology_enrichment_celltype_v019_2=CL:0000738,7.13e-25,136;CL:0000037,1.76e-23,168;CL:0000988,8.22e-22,177;CL:0002032,2.51e-21,161;CL:0000837,2.51e-21,161;CL:0002087,2.89e-19,115;CL:0002031,7.21e-19,120;CL:0000542,4.82e-16,53;CL:0000051,4.82e-16,53;CL:0000838,6.35e-16,52;CL:0000860,4.88e-10,42;CL:0002057,4.88e-10,42;CL:0000084,1.82e-08,25;CL:0000827,1.82e-08,25;CL:0000763,6.61e-08,108;CL:0000049,6.61e-08,108;CL:0000791,7.11e-08,18;CL:0000789,7.11e-08,18;CL:0002420,7.11e-08,18;CL:0002419,7.11e-08,18;CL:0000790,7.11e-08,18;CL:0000766,8.18e-08,72;CL:0000945,3.39e-07,24;CL:0000826,3.39e-07,24 | |||
|ontology_enrichment_development_v019=CL:0000051;5.59e-10;53!CL:0000790;6.82e-08;18!CL:0002057;8.43e-08;42 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001049!4.34e-15!57;UBERON:0005068!4.34e-15!57;UBERON:0006241!4.34e-15!57;UBERON:0007135!4.34e-15!57;UBERON:0002780!2.49e-12!41;UBERON:0001890!2.49e-12!41;UBERON:0006240!2.49e-12!41;UBERON:0000955!5.26e-12!69;UBERON:0006238!5.26e-12!69;UBERON:0007023!1.23e-11!115;UBERON:0002020!1.61e-11!34;UBERON:0003528!1.61e-11!34;UBERON:0001893!2.03e-11!34;UBERON:0003080!2.03e-11!42;UBERON:0001017!4.23e-11!82;UBERON:0002616!4.79e-11!59;UBERON:0002791!7.90e-11!33;UBERON:0001869!1.39e-10!32;UBERON:0002390!4.12e-10!102;UBERON:0003061!4.12e-10!102;UBERON:0005743!5.49e-10!86;UBERON:0000073!5.55e-09!94;UBERON:0001016!5.55e-09!94;UBERON:0002619!9.88e-09!22;UBERON:0002193!4.49e-08!112;UBERON:0001950!5.00e-08!20;UBERON:0000956!9.23e-08!25;UBERON:0000203!9.23e-08!25;UBERON:0002346!1.24e-07!90;UBERON:0003075!1.76e-07!86;UBERON:0007284!1.76e-07!86 | |||
|ontology_enrichment_uberon_v019=UBERON:0001893;2.96e-10;34!UBERON:0003528;7.25e-10;34!UBERON:0002020;7.25e-10;34!UBERON:0001869;1.37e-09;32!UBERON:0002791;2.22e-09;32!UBERON:0002780;7.88e-09;41!UBERON:0001890;7.88e-09;41!UBERON:0002619;1.13e-08;22!UBERON:0000073;3.74e-08;53!UBERON:0002616;3.74e-08;53!UBERON:0001950;5.75e-08;20!UBERON:0000956;9.09e-08;25!UBERON:0000203;9.09e-08;25!UBERON:0000955;8.60e-07;68 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001049,5.45e-16,56;UBERON:0005068,5.45e-16,56;UBERON:0006241,5.45e-16,56;UBERON:0007135,5.45e-16,56;UBERON:0000073,2.14e-14,53;UBERON:0002616,2.14e-14,53;UBERON:0000955,1.10e-12,68;UBERON:0006238,1.10e-12,68;UBERON:0002780,2.57e-12,41;UBERON:0001890,2.57e-12,41;UBERON:0003080,2.57e-12,41;UBERON:0006240,2.57e-12,41;UBERON:0001017,1.06e-11,81;UBERON:0003528,1.65e-11,34;UBERON:0002020,1.65e-11,34;UBERON:0001893,2.08e-11,34;UBERON:0007023,3.26e-11,114;UBERON:0001869,1.43e-10,32;UBERON:0001016,1.81e-10,89;UBERON:0002791,2.19e-10,32;UBERON:0002390,1.26e-09,98;UBERON:0003061,1.26e-09,98;UBERON:0002619,1.01e-08,22;UBERON:0002346,2.13e-08,86;UBERON:0003075,2.92e-08,82;UBERON:0007284,2.92e-08,82;UBERON:0001950,5.13e-08,20;UBERON:0000956,9.43e-08,25;UBERON:0000203,9.43e-08,25;UBERON:0002193,1.27e-07,108 | |||
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| ||
|short_description=p1@VAMP1 | |||
}} | }} |
Latest revision as of 22:36, 19 September 2015
Short description: | p1@VAMP1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_VAMP1_5end |
Coexpression cluster: | C247_pons_locus_medulla_spinal_paracentral_medial_occipital |
Association with transcript: | 0bp_to_ENST00000355479, ENST00000396308, ENST00000396943, ENST00000535927, ENST00000539047, NM_014231, NM_016830, NM_199245, uc001qoj.2, uc001qok.2, uc001qol.2_5end |
EntrezGene: | VAMP1 |
HGNC: | 12642 |
UniProt: | B4DZX9P23763F5H787 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
leukocyte | 7.13e-25 | 136 |
hematopoietic stem cell | 1.76e-23 | 168 |
hematopoietic cell | 8.22e-22 | 177 |
hematopoietic oligopotent progenitor cell | 2.51e-21 | 161 |
hematopoietic multipotent progenitor cell | 2.51e-21 | 161 |
nongranular leukocyte | 2.89e-19 | 115 |
hematopoietic lineage restricted progenitor cell | 7.21e-19 | 120 |
lymphocyte | 4.82e-16 | 53 |
common lymphoid progenitor | 4.82e-16 | 53 |
lymphoid lineage restricted progenitor cell | 6.35e-16 | 52 |
classical monocyte | 4.88e-10 | 42 |
CD14-positive, CD16-negative classical monocyte | 4.88e-10 | 42 |
T cell | 1.82e-08 | 25 |
pro-T cell | 1.82e-08 | 25 |
myeloid cell | 6.61e-08 | 108 |
common myeloid progenitor | 6.61e-08 | 108 |
mature alpha-beta T cell | 7.11e-08 | 18 |
alpha-beta T cell | 7.11e-08 | 18 |
immature T cell | 7.11e-08 | 18 |
mature T cell | 7.11e-08 | 18 |
immature alpha-beta T cell | 7.11e-08 | 18 |
myeloid leukocyte | 8.18e-08 | 72 |
lymphocyte of B lineage | 3.39e-07 | 24 |
pro-B cell | 3.39e-07 | 24 |
Ontology term | p-value | n |
---|---|---|
neural tube | 5.45e-16 | 56 |
neural rod | 5.45e-16 | 56 |
future spinal cord | 5.45e-16 | 56 |
neural keel | 5.45e-16 | 56 |
regional part of nervous system | 2.14e-14 | 53 |
regional part of brain | 2.14e-14 | 53 |
brain | 1.10e-12 | 68 |
future brain | 1.10e-12 | 68 |
regional part of forebrain | 2.57e-12 | 41 |
forebrain | 2.57e-12 | 41 |
anterior neural tube | 2.57e-12 | 41 |
future forebrain | 2.57e-12 | 41 |
central nervous system | 1.06e-11 | 81 |
brain grey matter | 1.65e-11 | 34 |
gray matter | 1.65e-11 | 34 |
telencephalon | 2.08e-11 | 34 |
adult organism | 3.26e-11 | 114 |
cerebral hemisphere | 1.43e-10 | 32 |
nervous system | 1.81e-10 | 89 |
regional part of telencephalon | 2.19e-10 | 32 |
hematopoietic system | 1.26e-09 | 98 |
blood island | 1.26e-09 | 98 |
regional part of cerebral cortex | 1.01e-08 | 22 |
neurectoderm | 2.13e-08 | 86 |
neural plate | 2.92e-08 | 82 |
presumptive neural plate | 2.92e-08 | 82 |
neocortex | 5.13e-08 | 20 |
cerebral cortex | 9.43e-08 | 25 |
pallium | 9.43e-08 | 25 |
hemolymphoid system | 1.27e-07 | 108 |