FFCP PHASE1:Hg19::chr13:48877940..48877953,+: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr13:48877940..48877953,+
|short_description=p4@RB1
|description=CAGE_peak_4_at_RB1_5end
|association_with_transcript=29bp_to_ENST00000267163,ENST00000467505_5...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=5925 | |EntrezGene=5925 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=9884 | |HGNC=9884 | ||
|TSSclassifier=strong | |||
|UniProt=P06400,Q92728 | |UniProt=P06400,Q92728 | ||
|association_with_transcript=29bp_to_ENST00000267163,ENST00000467505_5end | |||
|cluster_id=chr13:48877940..48877953,+ | |||
|description=CAGE_peak_4_at_RB1_5end | |||
|id=chr13:48877940..48877953,+ | |||
|ontology_enrichment_celltype=CL:0000738!3.22e-40!140;CL:0000037!1.64e-39!172;CL:0000566!1.64e-39!172;CL:0002032!5.01e-37!165;CL:0000837!5.01e-37!165;CL:0002031!4.78e-35!124;CL:0002087!1.87e-33!119;CL:0000988!2.88e-33!182;CL:0000766!6.09e-29!76;CL:0000839!2.08e-27!70;CL:0000763!2.81e-27!112;CL:0000049!2.81e-27!112;CL:0000557!5.92e-27!71;CL:0002057!4.03e-25!42;CL:0002194!5.16e-25!63;CL:0000576!5.16e-25!63;CL:0000040!5.16e-25!63;CL:0000559!5.16e-25!63;CL:0002009!8.72e-25!65;CL:0000860!1.24e-24!45;CL:0000542!5.86e-09!53;CL:0000051!5.86e-09!53;CL:0000838!7.89e-09!52;CL:0000134!4.42e-08!358;CL:0000945!1.41e-07!24;CL:0000826!1.41e-07!24;CL:0000219!2.19e-07!390 | |||
|ontology_enrichment_celltype_v019=CL:0000860;1.98e-20;33!CL:0002057;1.98e-20;33!CL:0000473;2.03e-18;39!CL:0000234;2.03e-18;39!CL:0000576;3.17e-17;48!CL:0000766;4.12e-14;69!CL:0002087;3.50e-11;104!CL:0000738;5.37e-10;136!CL:0000763;1.85e-08;100!CL:0000945;2.08e-07;24 | |||
|ontology_enrichment_celltype_v019_2=CL:0000738,1.88e-40,136;CL:0000037,6.81e-40,168;CL:0002032,2.51e-37,161;CL:0000837,2.51e-37,161;CL:0002031,4.13e-35,120;CL:0000988,1.11e-34,177;CL:0002087,1.83e-33,115;CL:0000766,1.29e-29,72;CL:0000839,4.80e-28,66;CL:0000763,6.90e-28,108;CL:0000049,6.90e-28,108;CL:0000473,1.43e-27,48;CL:0000234,1.43e-27,48;CL:0000557,1.49e-27,67;CL:0000860,3.77e-26,42;CL:0002057,3.77e-26,42;CL:0002194,1.43e-25,59;CL:0000576,1.43e-25,59;CL:0000040,1.43e-25,59;CL:0000559,1.43e-25,59;CL:0002009,2.62e-25,61;CL:0000542,8.02e-09,53;CL:0000051,8.02e-09,53;CL:0000838,1.09e-08,52;CL:0000134,3.26e-08,354;CL:0000945,1.31e-07,24;CL:0000826,1.31e-07,24;CL:0000219,1.45e-07,386;CL:0002320,6.59e-07,361 | |||
|ontology_enrichment_development_v019=CL:0002057;1.54e-19;42!CL:0000049;1.03e-08;108 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002390!2.53e-24!102;UBERON:0003061!2.53e-24!102;UBERON:0002193!2.74e-22!112;UBERON:0002371!6.57e-22!80;UBERON:0001474!1.17e-19!86;UBERON:0002405!5.72e-17!115;UBERON:0004765!8.64e-16!101;UBERON:0001434!8.64e-16!101;UBERON:0002384!5.67e-07!375;UBERON:0003081!8.37e-07!216 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002390,9.61e-25,98;UBERON:0003061,9.61e-25,98;UBERON:0002193,4.58e-23,108;UBERON:0002405,2.07e-22,93;UBERON:0002371,2.40e-22,76;UBERON:0001474,1.59e-19,82;UBERON:0004765,1.12e-15,90;UBERON:0001434,7.21e-14,100;UBERON:0003081,2.14e-08,203;UBERON:0002384,3.13e-07,371 | |||
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| ||
|short_description=p4@RB1 | |||
}} | }} |
Latest revision as of 15:15, 17 September 2015
Short description: | p4@RB1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_4_at_RB1_5end |
Coexpression cluster: | NA |
Association with transcript: | 29bp_to_ENST00000267163, ENST00000467505_5end |
EntrezGene: | RB1 |
HGNC: | 9884 |
UniProt: | P06400Q92728 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
leukocyte | 1.88e-40 | 136 |
hematopoietic stem cell | 6.81e-40 | 168 |
hematopoietic oligopotent progenitor cell | 2.51e-37 | 161 |
hematopoietic multipotent progenitor cell | 2.51e-37 | 161 |
hematopoietic lineage restricted progenitor cell | 4.13e-35 | 120 |
hematopoietic cell | 1.11e-34 | 177 |
nongranular leukocyte | 1.83e-33 | 115 |
myeloid leukocyte | 1.29e-29 | 72 |
myeloid lineage restricted progenitor cell | 4.80e-28 | 66 |
myeloid cell | 6.90e-28 | 108 |
common myeloid progenitor | 6.90e-28 | 108 |
defensive cell | 1.43e-27 | 48 |
phagocyte | 1.43e-27 | 48 |
granulocyte monocyte progenitor cell | 1.49e-27 | 67 |
classical monocyte | 3.77e-26 | 42 |
CD14-positive, CD16-negative classical monocyte | 3.77e-26 | 42 |
monopoietic cell | 1.43e-25 | 59 |
monocyte | 1.43e-25 | 59 |
monoblast | 1.43e-25 | 59 |
promonocyte | 1.43e-25 | 59 |
macrophage dendritic cell progenitor | 2.62e-25 | 61 |
lymphocyte | 8.02e-09 | 53 |
common lymphoid progenitor | 8.02e-09 | 53 |
lymphoid lineage restricted progenitor cell | 1.09e-08 | 52 |
mesenchymal cell | 3.26e-08 | 354 |
lymphocyte of B lineage | 1.31e-07 | 24 |
pro-B cell | 1.31e-07 | 24 |
motile cell | 1.45e-07 | 386 |
connective tissue cell | 6.59e-07 | 361 |
Ontology term | p-value | n |
---|---|---|
hematopoietic system | 9.61e-25 | 98 |
blood island | 9.61e-25 | 98 |
hemolymphoid system | 4.58e-23 | 108 |
immune system | 2.07e-22 | 93 |
bone marrow | 2.40e-22 | 76 |
bone element | 1.59e-19 | 82 |
skeletal element | 1.12e-15 | 90 |
skeletal system | 7.21e-14 | 100 |
lateral plate mesoderm | 2.14e-08 | 203 |
connective tissue | 3.13e-07 | 371 |