FFCP PHASE1:Hg19::chr9:112260531..112260598,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=5774 | |EntrezGene=5774 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=9655 | |HGNC=9655 | ||
|TSSclassifier=strong | |||
|UniProt=P26045,B7Z9V1,Q8N4S3 | |UniProt=P26045,B7Z9V1,Q8N4S3 | ||
|association_with_transcript=0bp_to_ENST00000262539,ENST00000374541,ENST00000394831,NM_001145368,NM_002829,uc004bed.2,uc004bee.3,uc011lwg.1,uc011lwh.1_5end | |association_with_transcript=0bp_to_ENST00000262539,ENST00000374541,ENST00000394831,NM_001145368,NM_002829,uc004bed.2,uc004bee.3,uc011lwg.1,uc011lwh.1_5end | ||
|cluster_id=chr9:112260531..112260598,- | |||
|description=CAGE_peak_1_at_PTPN3_5end | |description=CAGE_peak_1_at_PTPN3_5end | ||
|id=chr9:112260531..112260598,- | |id=chr9:112260531..112260598,- | ||
|ontology_enrichment_celltype=CL:0000066!1.13e-34!254;CL:0000223!1.77e-17!59;CL:0002076!8.85e-14!43;CL:0002251!3.37e-07!21 | |ontology_enrichment_celltype=CL:0000066!1.13e-34!254;CL:0000223!1.77e-17!59;CL:0002076!8.85e-14!43;CL:0002251!3.37e-07!21 | ||
|ontology_enrichment_celltype_v019=CL:0002076;4.77e-11;42!CL:0002251;2.28e-07;20 | |||
|ontology_enrichment_celltype_v019_2=CL:0000066,3.00e-35,253;CL:0000223,2.57e-18,58;CL:0002076,2.50e-14,42;CL:0002251,2.00e-07,20 | |||
|ontology_enrichment_development_v019=CL:0000223;5.04e-10;58!UBERON:0001041;3.97e-07;30!UBERON:0006595;4.12e-07;86 | |||
|ontology_enrichment_disease=DOID:305!1.08e-26!106;DOID:0050687!1.72e-25!143;DOID:162!3.69e-11!235;DOID:14566!5.14e-10!239;DOID:1749!8.04e-08!14;DOID:299!2.00e-07!25 | |||
|ontology_enrichment_disease_v019=DOID:305;2.77e-08;106!DOID:1749;3.80e-08;14!DOID:299;1.77e-07;25 | |||
|ontology_enrichment_disease_v019_2=DOID:305,3.28e-27,106;DOID:0050687,3.78e-25,143;DOID:162,2.60e-12,235;DOID:14566,5.32e-11,239;DOID:1749,3.92e-08,14;DOID:299,1.52e-07,25 | |||
|ontology_enrichment_uberon=UBERON:0004119!1.50e-25!169;UBERON:0000925!1.50e-25!169;UBERON:0006595!1.50e-25!169;UBERON:0000481!2.90e-22!347;UBERON:0001007!2.63e-21!155;UBERON:0001555!2.63e-21!155;UBERON:0007026!2.63e-21!155;UBERON:0004921!5.94e-16!129;UBERON:0004185!5.94e-16!129;UBERON:0000077!1.40e-15!130;UBERON:0000062!1.65e-15!511;UBERON:0005177!3.47e-14!107;UBERON:0001041!3.22e-13!98;UBERON:0000475!1.07e-12!365;UBERON:0000064!1.10e-12!219;UBERON:0001004!5.24e-12!72;UBERON:0000922!6.36e-12!612;UBERON:0003104!1.54e-11!238;UBERON:0009142!1.54e-11!238;UBERON:0000466!1.75e-11!126;UBERON:0002050!2.23e-11!605;UBERON:0005423!2.23e-11!605;UBERON:0000923!3.67e-11!604;UBERON:0005291!3.67e-11!604;UBERON:0006598!3.67e-11!604;UBERON:0002532!3.67e-11!604;UBERON:0005911!8.94e-11!82;UBERON:0001048!1.08e-09!168;UBERON:0000468!1.68e-09!659;UBERON:0007023!1.75e-09!115;UBERON:0004121!2.52e-09!169;UBERON:0000924!6.57e-09!173;UBERON:0006601!6.57e-09!173;UBERON:0000464!8.48e-09!104;UBERON:0000467!1.13e-08!625;UBERON:0000480!1.84e-08!626;UBERON:0000483!3.21e-08!309;UBERON:0000033!3.37e-08!123;UBERON:0000119!3.57e-08!312;UBERON:0000153!4.69e-08!129;UBERON:0007811!4.69e-08!129;UBERON:0009569!1.05e-07!113;UBERON:0000166!1.70e-07!21;UBERON:0000065!2.37e-07!53;UBERON:0002530!2.91e-07!59;UBERON:0000477!4.82e-07!286;UBERON:0005172!8.15e-07!55;UBERON:0005173!8.15e-07!55;UBERON:0000161!8.47e-07!35;UBERON:0000165!8.61e-07!28;UBERON:0000930!8.61e-07!28 | |||
|ontology_enrichment_uberon_v019=UBERON:0000161;2.69e-07;19!UBERON:0000166;2.69e-07;19!UBERON:0000165;9.32e-07;28 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004119,2.36e-21,160;UBERON:0000925,2.36e-21,160;UBERON:0006595,2.36e-21,160;UBERON:0001007,8.10e-18,145;UBERON:0001555,8.10e-18,145;UBERON:0007026,8.10e-18,145;UBERON:0005177,1.28e-14,101;UBERON:0004921,3.28e-13,118;UBERON:0011216,2.57e-12,223;UBERON:0001004,3.19e-11,74;UBERON:0005911,4.52e-11,82;UBERON:0001041,5.40e-11,87;UBERON:0007023,4.86e-09,114;UBERON:0002530,8.10e-08,59;UBERON:0001008,1.03e-07,48;UBERON:0006554,1.25e-07,47;UBERON:0005172,2.07e-07,54;UBERON:0005173,2.07e-07,54;UBERON:0009569,4.44e-07,112;UBERON:0000166,5.23e-07,22;UBERON:0000065,5.81e-07,54;UBERON:0002365,6.82e-07,31;UBERON:0002330,6.82e-07,31;UBERON:0000922,8.31e-07,592 | |||
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|phase1_expression=0.181678379270557,0.642301571672949,0.140954404095971,0,0,0,0,0.631719873426831,0.522371256399677,2.94880723801811,6.28021051175185,17.4753097704138,11.3419800638235,2.59909341216098,3.64537113300707,0.672325146451775,0,0.730310090387373,0,0.738726348460727,0.204000691244253,1.88072832886853,0.572471974262113,0.547497700291537,1.63205431473244,0,0.0821005894499457,0,0,0,1.23852898652861,10.1136334692682,12.3494426699083,14.7901604066715,0,0,0,0,0,0.217010870715852,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.56738522469114,0,0.251248665256743,0,0,3.02699751316684,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.205601498999509,0,0,0,0,0,0,0,0,0.128091319725675,0.130059347559878,0,0,0,0,0,0,0,0,0,0,0.318565414324097,0,0,0,0,0,0,0,0,0,0,2.43806866313962,0.670700859703636,1.40648818027883,2.89151321907653,3.00802746381534,4.05570253090306,15.1104329939709,9.24606253575008,2.55244006342983,0.886917589850256,2.10803485663503,13.7528029272598,7.65020105414339,7.04490441290416,0,0,0,0.238490624305342,0,0,0,0,0,0,0,0,0,0,0.35576626268671,0,0.402829317109147,1.52054421143703,0.976248230192678,0,0.81014194788176,0,0,0,0,0,0,0,0,8.72188104285069,0,3.03913227994991,0.132409180813219,0.286836620748814,1.06400514659507,2.80338800071154,1.06748995729705,1.72667283892012,2.8008993185979,1.75123873690594,1.79808093424805,0.908144565869588,1.72852777344,0.234321431833797,1.24864030732128,0,0.298897361103602,0.939475989150119,0.323745888736263,0.421352420106746,4.49139176760765,2.7023549808589,6.81950155760052,2.37600571456411,2.22540236350701,0,0,1.85169725349473,2.37725187756732,6.92660288710457,0.877955241761676,2.14541457059314,2.10333282469236,2.04177929688038,0,0,0,0,0,0,0.37223371266318,0.168776332241266,0,0.252433774244115,0,1.61646056818812,0,0,0.339121184620975,16.8136942252068,16.0920211148592,20.3631262726193,3.29329006549908,2.12047629314376,1.39432731443422,2.59152637538426,2.01856680700503,0.72995471815166,0,0.643240938192885,0,0.464367928031979,0.721879481669586,5.20549920175313,3.54027849164014,3.85617647813571,5.5146986366197,5.01122721412534,5.93176547777742,3.91010793664477,4.51309369788296,4.23221872641029,0,1.40241773803446,2.8810180793198,1.47008711385542,29.1536580090211,48.1585336172037,25.4039659873004,0,14.3896473095443,1.88724591328378,19.0965496611008,10.1161577931858,15.9841066134493,15.554858786633,0.325808305310325,1.03993478527958,1.44331342025273,1.27523445472584,2.81780866165972,0.288732895522148,0.462985512576611,0.951270761172991,16.5942923571448,11.1603201072333,0,0,0,6.56136837907439,17.3021592044825,16.7294614746016,12.985985791913,13.9504290486702,18.7857512790953,0,0,0,0,0,4.00036734040665,8.02175693672383,7.03304683260282,3.4214489204541,6.88944201112268,3.00343057843917,5.43070221998099,2.24262168690721,1.30788020649984,2.3468251462704,2.06834745212444,0,0,0,0,1.02882949704857,5.67396528093113,1.3321108950805,0.428933980974443,0,0,2.28015329005615,0,0.791951872933429,10.2489388200259,6.10073421020206,9.69738014465953,0,0,0,3.83399768786532,3.44585807502342,2.85273810081437,0.723906533337896,3.6985738059069,2.86497541183833,0,0,0,0,0,1.30139853857622,0.773288812777695,1.34013012267479,0,0,0,0,5.76650011079957,2.00068208423871,2.17012018959788,6.03115498439341,2.67643483195743,3.15404830067869,2.81139395982512,3.31040709700491,2.27407504055985,2.0694614258501,2.65690239414175,3.68738337083406,0.868836144680828,0.783204629850962,1.37257369524342,0.206768026122887,0,0,6.36567900037145,8.32177197552485,6.35019615992329,0,0.767309866440312,0,0.256278298511402,0.511707249066704,0.160853921143607,0,0.154209693802656,0.532685175939381,0.164254312027618,1.03850885836724,0.348631135379878,15.1074311989528,15.0379852727464,17.3112259199485,0,0.364182336013434,0,12.1823895485001,27.4944753462761,10.1965469992991,8.76835347919564,27.8656300277192,0,0,3.02282282542995,3.08454505380579,6.50271450105247,4.51520796469368,27.7815137619092,18.2836721964319,12.0892367549976,0,0,5.64190275256056,0.984043937099117,2.27764876265012,26.8937040400555,17.3981983154852,26.3205304746676,20.099293829866,8.45078319847478,0,1.16004861950546,3.08097234229289,2.91656981979646,2.34322173223702,1.93356440762893,3.62541734785571,2.89770533214743,0.623224249527161,21.6523239122881,16.336155726034,46.961478198007,15.3759826900436,0,0,0,4.31247012246524,2.66153015158511,0,0,3.57812216854978,1.86079184679834,5.69482964493707,0.38126038784765,0.255897791311334,0,1.90921948755562,3.13979456079692,1.2591072030832,0.823611089208164,0.471249609382746,1.2130948894399,4.75530963519025,1.26377536871694,0,0.731140468893853,0,0,0,0,1.65409603063837,2.65375590096488,1.31535265576129,0.578775534266688,1.31178950409327,2.02910376962704,0,0.845086807596724,1.29070216983646,0.88424136911809,2.49669736036875,0,3.37772216476263,1.64647446479951,1.51789269506286,0.699869440489966,18.8595340942004,10.7248364085726,9.80018863751903,28.2431402330337,6.88808596273968,8.42357378338128,12.4160442990269,28.25597822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| ||
|short_description=p1@PTPN3 | |short_description=p1@PTPN3 | ||
}} | }} |
Latest revision as of 02:18, 20 September 2015
Short description: | p1@PTPN3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_PTPN3_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000262539, ENST00000374541, ENST00000394831, NM_001145368, NM_002829, uc004bed.2, uc004bee.3, uc011lwg.1, uc011lwh.1_5end |
EntrezGene: | PTPN3 |
HGNC: | 9655 |
UniProt: | P26045B7Z9V1Q8N4S3 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell | 3.00e-35 | 253 |
endodermal cell | 2.57e-18 | 58 |
endo-epithelial cell | 2.50e-14 | 42 |
epithelial cell of alimentary canal | 2.00e-07 | 20 |
Ontology term | p-value | n |
---|---|---|
endoderm-derived structure | 2.36e-21 | 160 |
endoderm | 2.36e-21 | 160 |
presumptive endoderm | 2.36e-21 | 160 |
digestive system | 8.10e-18 | 145 |
digestive tract | 8.10e-18 | 145 |
primitive gut | 8.10e-18 | 145 |
trunk region element | 1.28e-14 | 101 |
subdivision of digestive tract | 3.28e-13 | 118 |
organ system subdivision | 2.57e-12 | 223 |
respiratory system | 3.19e-11 | 74 |
endo-epithelium | 4.52e-11 | 82 |
foregut | 5.40e-11 | 87 |
adult organism | 4.86e-09 | 114 |
gland | 8.10e-08 | 59 |
renal system | 1.03e-07 | 48 |
urinary system structure | 1.25e-07 | 47 |
abdomen element | 2.07e-07 | 54 |
abdominal segment element | 2.07e-07 | 54 |
subdivision of trunk | 4.44e-07 | 112 |
oral opening | 5.23e-07 | 22 |
respiratory tract | 5.81e-07 | 54 |
exocrine gland | 6.82e-07 | 31 |
exocrine system | 6.82e-07 | 31 |
embryo | 8.31e-07 | 592 |
Ontology term | p-value | n |
---|---|---|
carcinoma | 3.28e-27 | 106 |
cell type cancer | 3.78e-25 | 143 |
cancer | 2.60e-12 | 235 |
disease of cellular proliferation | 5.32e-11 | 239 |
squamous cell carcinoma | 3.92e-08 | 14 |
adenocarcinoma | 1.52e-07 | 25 |