FFCP PHASE1:Hg19::chr3:149535040..149535052,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(8 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=11342 | |EntrezGene=11342 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=10057 | |HGNC=10057 | ||
|TSSclassifier=strong | |||
|UniProt=C9J8T4 | |UniProt=C9J8T4 | ||
|association_with_transcript=11bp_to_ENST00000466795_5end | |association_with_transcript=11bp_to_ENST00000466795_5end | ||
|cluster_id=chr3:149535040..149535052,+ | |||
|coexpression_cluster_id=C7 | |||
|description=CAGE_peak_11_at_RNF13_5end | |description=CAGE_peak_11_at_RNF13_5end | ||
|id=chr3:149535040..149535052,+ | |id=chr3:149535040..149535052,+ | ||
|ontology_enrichment_celltype=CL:0002057!4.60e-93!42;CL:0000860!2.86e-86!45;CL:0002194!2.56e-77!63;CL:0000576!2.56e-77!63;CL:0000040!2.56e-77!63;CL:0000559!2.56e-77!63;CL:0002009!1.11e-74!65;CL:0000766!1.16e-73!76;CL:0000839!9.76e-69!70;CL:0000557!1.20e-67!71;CL:0000763!5.96e-47!112;CL:0000049!5.96e-47!112;CL:0002087!3.92e-41!119;CL:0000738!1.12e-39!140;CL:0002031!4.35e-39!124;CL:0002032!3.97e-32!165;CL:0000837!3.97e-32!165;CL:0000037!2.10e-30!172;CL:0000566!2.10e-30!172;CL:0000988!3.58e-28!182;CL:0000134!2.56e-09!358;CL:0002320!5.99e-09!365;CL:0000219!1.19e-07!390 | |ontology_enrichment_celltype=CL:0002057!4.60e-93!42;CL:0000860!2.86e-86!45;CL:0002194!2.56e-77!63;CL:0000576!2.56e-77!63;CL:0000040!2.56e-77!63;CL:0000559!2.56e-77!63;CL:0002009!1.11e-74!65;CL:0000766!1.16e-73!76;CL:0000839!9.76e-69!70;CL:0000557!1.20e-67!71;CL:0000763!5.96e-47!112;CL:0000049!5.96e-47!112;CL:0002087!3.92e-41!119;CL:0000738!1.12e-39!140;CL:0002031!4.35e-39!124;CL:0002032!3.97e-32!165;CL:0000837!3.97e-32!165;CL:0000037!2.10e-30!172;CL:0000566!2.10e-30!172;CL:0000988!3.58e-28!182;CL:0000134!2.56e-09!358;CL:0002320!5.99e-09!365;CL:0000219!1.19e-07!390 | ||
|ontology_enrichment_celltype_v019=CL:0000860;9.58e-114;33!CL:0002057;9.58e-114;33!CL:0000473;1.04e-88;39!CL:0000234;1.04e-88;39!CL:0000576;2.79e-51;48!CL:0000766;2.65e-35;69!CL:0000763;7.51e-17;100!CL:0002087;7.02e-14;104!CL:0000738;8.32e-09;136!CL:0000219;3.39e-07;193!CL:0000988;6.62e-07;177 | |||
|ontology_enrichment_celltype_v019_2=CL:0000860,7.79e-98,42;CL:0002057,7.79e-98,42;CL:0000473,1.88e-92,48;CL:0000234,1.88e-92,48;CL:0002194,3.39e-73,59;CL:0000576,3.39e-73,59;CL:0000040,3.39e-73,59;CL:0000559,3.39e-73,59;CL:0002009,1.04e-70,61;CL:0000766,7.37e-70,72;CL:0000839,3.81e-65,66;CL:0000557,3.94e-64,67;CL:0000763,1.76e-45,108;CL:0000049,1.76e-45,108;CL:0002087,5.89e-36,115;CL:0000738,2.33e-35,136;CL:0002031,2.65e-34,120;CL:0002032,2.86e-29,161;CL:0000837,2.86e-29,161;CL:0000037,6.91e-28,168;CL:0000988,2.88e-26,177;CL:0000134,5.00e-11,354;CL:0002320,9.96e-11,361;CL:0000219,1.13e-09,386;CL:0000048,2.22e-08,427;CL:0000723,3.36e-08,433;CL:0000034,5.71e-08,441 | |||
|ontology_enrichment_development_v019=CL:0002057;3.33e-71;42!CL:0000049;1.23e-13;108 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002390!1.20e-60!102;UBERON:0003061!1.20e-60!102;UBERON:0002371!4.74e-59!80;UBERON:0002193!2.40e-54!112;UBERON:0001474!2.62e-54!86;UBERON:0002405!4.62e-45!115;UBERON:0004765!6.81e-45!101;UBERON:0001434!6.81e-45!101;UBERON:0002204!1.83e-23!167;UBERON:0003081!3.08e-23!216;UBERON:0002384!4.21e-09!375;UBERON:0000926!1.30e-07!448;UBERON:0004120!1.30e-07!448;UBERON:0006603!1.30e-07!448 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002371,3.53e-56,76;UBERON:0001474,7.80e-52,82;UBERON:0004765,6.25e-47,90;UBERON:0002405,2.63e-45,93;UBERON:0002390,8.11e-43,98;UBERON:0003061,8.11e-43,98;UBERON:0001434,6.85e-42,100;UBERON:0002193,1.60e-38,108;UBERON:0002204,1.45e-23,167;UBERON:0003081,1.14e-18,203;UBERON:0000926,1.56e-10,315;UBERON:0004120,1.56e-10,315;UBERON:0006603,1.56e-10,315;UBERON:0002384,2.55e-10,371 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.309632246632152,0,0,0,0,0,0,0,0,0.217010870715852,0,0.32389366601898,0,0.581592955118259,0.377875943688809,0.485168122375632,2.78914844286822,3.28934310417461,5.57471467611186,12.0830804775303,11.2710710872804,20.1009895405297,8.61864201841546,8.39130088658974,21.6682378550947,0.941211697713023,0.818718450173537,0.674170453335254,2.75475503133812,4.49300637906531,1.91801137739712,2.63881040149373,1.99463657621632,2.98357325372886,1.45104619314292,1.70215567407342,2.4912889959823,9.79869794501299,3.65038042894141,27.5829832775498,1.21079900526674,2.94622108790052,2.84816148696796,0,0,0.209658645508376,0,0,0,0.285012743741249,0.19891667719909,0,0,0,0,0.426730222566507,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.383220493601921,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.174129737299267,0.398873881556595,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.31780417436063,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.40402559083543,0.148631162288728,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.14415513436035,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.206082023295445,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0941438007767792,0,0,0,0,0,0,0,0.238231775457789,0.822724546172388,0,0.540031437238115,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.146508179271894,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.106787412567695,0,0,0,0,0,0,0,0,0,0,0,0,0.122026264901963,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.319267718114302,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.548257766857182,0,0,0,0,0,0,0,0,0,0,0.0679697329768317,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.150962843566674,0,0,0,0,0,0,0,0,0,0,0.0644578879735772,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0620747142958579,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.309632246632152,0,0,0,0,0,0,0,0,0.217010870715852,0,0.32389366601898,0,0.581592955118259,0.377875943688809,0.485168122375632,2.78914844286822,3.28934310417461,5.57471467611186,12.0830804775303,11.2710710872804,20.1009895405297,8.61864201841546,8.39130088658974,21.6682378550947,0.941211697713023,0.818718450173537,0.674170453335254,2.75475503133812,4.49300637906531,1.91801137739712,2.63881040149373,1.99463657621632,2.98357325372886,1.45104619314292,1.70215567407342,2.4912889959823,9.79869794501299,3.65038042894141,27.5829832775498,1.21079900526674,2.94622108790052,2.84816148696796,0,0,0.209658645508376,0,0,0,0.285012743741249,0.19891667719909,0,0,0,0,0.426730222566507,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.383220493601921,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.174129737299267,0.398873881556595,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.31780417436063,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.40402559083543,0.148631162288728,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.14415513436035,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.206082023295445,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0941438007767792,0,0,0,0,0,0,0,0.238231775457789,0.822724546172388,0,0.540031437238115,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.146508179271894,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.106787412567695,0,0,0,0,0,0,0,0,0,0,0,0,0.122026264901963,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.319267718114302,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.548257766857182,0,0,0,0,0,0,0,0,0,0,0.0679697329768317,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.150962843566674,0,0,0,0,0,0,0,0,0,0,0.0644578879735772,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0620747142958579,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | ||
|short_description=p11@RNF13 | |short_description=p11@RNF13 | ||
}} | }} |
Latest revision as of 22:40, 15 September 2015
Short description: | p11@RNF13 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_11_at_RNF13_5end |
Coexpression cluster: | C7_CD14_Eosinophils_Neutrophils_Smooth_Basophils_Macrophage_Mast |
Association with transcript: | 11bp_to_ENST00000466795_5end |
EntrezGene: | RNF13 |
HGNC: | 10057 |
UniProt: | C9J8T4 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
classical monocyte | 7.79e-98 | 42 |
CD14-positive, CD16-negative classical monocyte | 7.79e-98 | 42 |
defensive cell | 1.88e-92 | 48 |
phagocyte | 1.88e-92 | 48 |
monopoietic cell | 3.39e-73 | 59 |
monocyte | 3.39e-73 | 59 |
monoblast | 3.39e-73 | 59 |
promonocyte | 3.39e-73 | 59 |
macrophage dendritic cell progenitor | 1.04e-70 | 61 |
myeloid leukocyte | 7.37e-70 | 72 |
myeloid lineage restricted progenitor cell | 3.81e-65 | 66 |
granulocyte monocyte progenitor cell | 3.94e-64 | 67 |
myeloid cell | 1.76e-45 | 108 |
common myeloid progenitor | 1.76e-45 | 108 |
nongranular leukocyte | 5.89e-36 | 115 |
leukocyte | 2.33e-35 | 136 |
hematopoietic lineage restricted progenitor cell | 2.65e-34 | 120 |
hematopoietic oligopotent progenitor cell | 2.86e-29 | 161 |
hematopoietic multipotent progenitor cell | 2.86e-29 | 161 |
hematopoietic stem cell | 6.91e-28 | 168 |
hematopoietic cell | 2.88e-26 | 177 |
mesenchymal cell | 5.00e-11 | 354 |
connective tissue cell | 9.96e-11 | 361 |
motile cell | 1.13e-09 | 386 |
multi fate stem cell | 2.22e-08 | 427 |
somatic stem cell | 3.36e-08 | 433 |
stem cell | 5.71e-08 | 441 |
Ontology term | p-value | n |
---|---|---|
bone marrow | 3.53e-56 | 76 |
bone element | 7.80e-52 | 82 |
skeletal element | 6.25e-47 | 90 |
immune system | 2.63e-45 | 93 |
hematopoietic system | 8.11e-43 | 98 |
blood island | 8.11e-43 | 98 |
skeletal system | 6.85e-42 | 100 |
hemolymphoid system | 1.60e-38 | 108 |
musculoskeletal system | 1.45e-23 | 167 |
lateral plate mesoderm | 1.14e-18 | 203 |
mesoderm | 1.56e-10 | 315 |
mesoderm-derived structure | 1.56e-10 | 315 |
presumptive mesoderm | 1.56e-10 | 315 |
connective tissue | 2.55e-10 | 371 |