FFCP PHASE1:Hg19::chr15:45879429..45879438,+: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr15:45879429..45879438,+
|short_description=p6@PLDN
|description=CAGE_peak_6_at_PLDN_5end
|association_with_transcript=12bp_to_ENST00000220531,NM_012388,uc001...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=26258 | |EntrezGene=26258 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=8549 | |HGNC=8549 | ||
|TSSclassifier=strong | |||
|UniProt=Q9UL45,B3KY40 | |UniProt=Q9UL45,B3KY40 | ||
|association_with_transcript=12bp_to_ENST00000220531,NM_012388,uc001zvq.2,uc001zvr.2_5end | |||
|cluster_id=chr15:45879429..45879438,+ | |||
|coexpression_cluster_id=C3494 | |||
|description=CAGE_peak_6_at_PLDN_5end | |||
|id=chr15:45879429..45879438,+ | |||
|ontology_enrichment_celltype=CL:0000048!1.36e-22!430;CL:0000037!2.29e-22!172;CL:0000566!2.29e-22!172;CL:0000988!1.25e-21!182;CL:0000034!1.95e-21!444;CL:0000738!3.18e-21!140;CL:0000723!4.50e-21!436;CL:0002032!1.06e-20!165;CL:0000837!1.06e-20!165;CL:0000763!2.24e-18!112;CL:0000049!2.24e-18!112;CL:0000766!4.30e-18!76;CL:0002320!5.23e-18!365;CL:0000134!7.16e-18!358;CL:0002031!3.33e-17!124;CL:0002087!7.78e-17!119;CL:0000557!1.01e-16!71;CL:0002057!3.83e-16!42;CL:0000219!1.86e-15!390;CL:0000839!2.81e-15!70;CL:0002009!1.19e-14!65;CL:0002194!2.32e-14!63;CL:0000576!2.32e-14!63;CL:0000040!2.32e-14!63;CL:0000559!2.32e-14!63;CL:0000860!1.47e-13!45;CL:0002371!3.42e-09!591;CL:0000144!9.43e-08!625 | |||
|ontology_enrichment_celltype_v019=CL:0000860;3.11e-19;33!CL:0002057;3.11e-19;33!CL:0000473;8.55e-14;39!CL:0000234;8.55e-14;39!CL:0000576;4.09e-13;48!CL:0000766;8.03e-10;69!CL:0002087;7.54e-07;104 | |||
|ontology_enrichment_celltype_v019_2=CL:0000037,1.53e-24,168;CL:0000988,2.48e-24,177;CL:0000738,3.10e-24,136;CL:0000766,6.81e-24,72;CL:0002032,1.65e-22,161;CL:0000837,1.65e-22,161;CL:0000048,3.40e-22,427;CL:0000557,1.07e-21,67;CL:0000763,2.17e-21,108;CL:0000049,2.17e-21,108;CL:0000034,3.01e-21,441;CL:0000723,3.16e-21,433;CL:0000860,3.74e-20,42;CL:0002057,3.74e-20,42;CL:0000839,8.33e-20,66;CL:0002031,9.25e-20,120;CL:0002087,9.95e-20,115;CL:0002194,5.01e-19,59;CL:0000576,5.01e-19,59;CL:0000040,5.01e-19,59;CL:0000559,5.01e-19,59;CL:0002009,5.16e-19,61;CL:0002320,5.48e-19,361;CL:0000134,1.50e-18,354;CL:0000473,1.37e-17,48;CL:0000234,1.37e-17,48;CL:0000219,4.60e-16,386 | |||
|ontology_enrichment_development_v019=CL:0002057;1.04e-14;42 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002193!4.22e-17!112;UBERON:0002384!4.35e-17!375;UBERON:0002390!5.89e-17!102;UBERON:0003061!5.89e-17!102;UBERON:0002204!1.48e-15!167;UBERON:0002371!1.23e-14!80;UBERON:0001474!6.93e-14!86;UBERON:0004765!8.34e-14!101;UBERON:0001434!8.34e-14!101;UBERON:0002405!2.85e-11!115;UBERON:0003081!3.51e-09!216 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002193,7.86e-20,108;UBERON:0002390,1.43e-19,98;UBERON:0003061,1.43e-19,98;UBERON:0002371,1.08e-18,76;UBERON:0002405,6.67e-18,93;UBERON:0001474,9.07e-18,82;UBERON:0002384,9.69e-18,371;UBERON:0004765,1.02e-17,90;UBERON:0001434,4.41e-16,100;UBERON:0002204,3.87e-15,167;UBERON:0003081,1.19e-10,203;UBERON:0000926,6.37e-08,315;UBERON:0004120,6.37e-08,315;UBERON:0006603,6.37e-08,315 | |||
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| ||
|short_description=p6@PLDN | |||
}} | }} |
Latest revision as of 20:38, 17 September 2015
Short description: | p6@PLDN |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_6_at_PLDN_5end |
Coexpression cluster: | C3494_CD14_Dendritic_Eosinophils_Mast_Whole_Neutrophils_CD4 |
Association with transcript: | 12bp_to_ENST00000220531, NM_012388, uc001zvq.2, uc001zvr.2_5end |
EntrezGene: | PLDN |
HGNC: | 8549 |
UniProt: | Q9UL45B3KY40 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
hematopoietic stem cell | 1.53e-24 | 168 |
hematopoietic cell | 2.48e-24 | 177 |
leukocyte | 3.10e-24 | 136 |
myeloid leukocyte | 6.81e-24 | 72 |
hematopoietic oligopotent progenitor cell | 1.65e-22 | 161 |
hematopoietic multipotent progenitor cell | 1.65e-22 | 161 |
multi fate stem cell | 3.40e-22 | 427 |
granulocyte monocyte progenitor cell | 1.07e-21 | 67 |
myeloid cell | 2.17e-21 | 108 |
common myeloid progenitor | 2.17e-21 | 108 |
stem cell | 3.01e-21 | 441 |
somatic stem cell | 3.16e-21 | 433 |
classical monocyte | 3.74e-20 | 42 |
CD14-positive, CD16-negative classical monocyte | 3.74e-20 | 42 |
myeloid lineage restricted progenitor cell | 8.33e-20 | 66 |
hematopoietic lineage restricted progenitor cell | 9.25e-20 | 120 |
nongranular leukocyte | 9.95e-20 | 115 |
monopoietic cell | 5.01e-19 | 59 |
monocyte | 5.01e-19 | 59 |
monoblast | 5.01e-19 | 59 |
promonocyte | 5.01e-19 | 59 |
macrophage dendritic cell progenitor | 5.16e-19 | 61 |
connective tissue cell | 5.48e-19 | 361 |
mesenchymal cell | 1.50e-18 | 354 |
defensive cell | 1.37e-17 | 48 |
phagocyte | 1.37e-17 | 48 |
motile cell | 4.60e-16 | 386 |
Ontology term | p-value | n |
---|---|---|
hemolymphoid system | 7.86e-20 | 108 |
hematopoietic system | 1.43e-19 | 98 |
blood island | 1.43e-19 | 98 |
bone marrow | 1.08e-18 | 76 |
immune system | 6.67e-18 | 93 |
bone element | 9.07e-18 | 82 |
connective tissue | 9.69e-18 | 371 |
skeletal element | 1.02e-17 | 90 |
skeletal system | 4.41e-16 | 100 |
musculoskeletal system | 3.87e-15 | 167 |
lateral plate mesoderm | 1.19e-10 | 203 |
mesoderm | 6.37e-08 | 315 |
mesoderm-derived structure | 6.37e-08 | 315 |
presumptive mesoderm | 6.37e-08 | 315 |