FFCP PHASE1:Hg19::chr15:45879636..45879649,+: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr15:45879636..45879649,+
|short_description=p5@PLDN
|description=CAGE_peak_5_at_PLDN_5end
|association_with_transcript=-139bp_to_uc001zvs.2_5end
|EntrezGene=...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=26258 | |EntrezGene=26258 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=8549 | |HGNC=8549 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-139bp_to_uc001zvs.2_5end | |||
|cluster_id=chr15:45879636..45879649,+ | |||
|coexpression_cluster_id=C7 | |||
|description=CAGE_peak_5_at_PLDN_5end | |||
|id=chr15:45879636..45879649,+ | |||
|ontology_enrichment_celltype=CL:0000766!5.12e-38!76;CL:0000557!7.33e-35!71;CL:0002009!4.80e-34!65;CL:0000763!2.82e-33!112;CL:0000049!2.82e-33!112;CL:0002194!8.84e-33!63;CL:0000576!8.84e-33!63;CL:0000040!8.84e-33!63;CL:0000559!8.84e-33!63;CL:0000839!4.04e-32!70;CL:0000860!1.83e-26!45;CL:0002057!3.56e-26!42;CL:0000738!1.08e-22!140;CL:0002032!2.77e-22!165;CL:0000837!2.77e-22!165;CL:0000037!4.55e-22!172;CL:0000566!4.55e-22!172;CL:0000988!6.34e-21!182;CL:0002031!7.14e-19!124;CL:0002087!2.53e-18!119;CL:0000134!4.07e-08!358;CL:0000219!2.21e-07!390;CL:0002320!4.72e-07!365;CL:0000048!8.74e-07!430 | |||
|ontology_enrichment_celltype_v019=CL:0000860;1.23e-27;33!CL:0002057;1.23e-27;33!CL:0000473;5.32e-26;39!CL:0000234;5.32e-26;39!CL:0000576;1.36e-24;48!CL:0000766;5.70e-21;69!CL:0000763;8.11e-12;100!CL:0000094;8.67e-08;8!CL:0000081;1.92e-07;11!CL:0000738;3.54e-07;136 | |||
|ontology_enrichment_celltype_v019_2=CL:0000766,3.71e-49,72;CL:0000557,7.47e-45,67;CL:0002009,3.40e-44,61;CL:0002194,1.82e-42,59;CL:0000576,1.82e-42,59;CL:0000040,1.82e-42,59;CL:0000559,1.82e-42,59;CL:0000839,7.69e-42,66;CL:0000763,7.72e-40,108;CL:0000049,7.72e-40,108;CL:0000473,3.10e-38,48;CL:0000234,3.10e-38,48;CL:0000860,2.85e-35,42;CL:0002057,2.85e-35,42;CL:0000738,4.27e-26,136;CL:0000037,1.18e-24,168;CL:0002032,2.66e-24,161;CL:0000837,2.66e-24,161;CL:0000988,3.75e-24,177;CL:0002031,3.33e-22,120;CL:0002087,6.24e-21,115;CL:0000134,3.49e-09,354;CL:0002320,2.75e-08,361;CL:0000094,9.20e-08,8;CL:0000219,1.33e-07,386;CL:0000081,2.98e-07,11;CL:0000048,3.54e-07,427;CL:0002393,7.24e-07,9;CL:0002397,7.24e-07,9 | |||
|ontology_enrichment_development_v019=CL:0002057;1.48e-25;42!CL:0000049;6.98e-12;108 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002390!6.95e-32!102;UBERON:0003061!6.95e-32!102;UBERON:0002371!6.59e-31!80;UBERON:0002193!3.09e-30!112;UBERON:0001474!6.37e-29!86;UBERON:0004765!1.39e-26!101;UBERON:0001434!1.39e-26!101;UBERON:0002405!1.45e-22!115;UBERON:0002204!4.12e-14!167;UBERON:0003081!7.11e-10!216;UBERON:0002384!2.90e-07!375 | |||
|ontology_enrichment_uberon_v019=UBERON:0000178;4.92e-08;15!UBERON:0000179;4.92e-08;15!UBERON:0000463;4.92e-08;15 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002390,2.02e-40,98;UBERON:0003061,2.02e-40,98;UBERON:0002193,3.23e-39,108;UBERON:0002371,3.98e-39,76;UBERON:0001474,7.06e-37,82;UBERON:0004765,3.77e-33,90;UBERON:0002405,4.28e-32,93;UBERON:0001434,2.02e-31,100;UBERON:0003081,3.91e-17,203;UBERON:0002204,2.98e-15,167;UBERON:0002384,2.52e-08,371;UBERON:0000926,3.61e-08,315;UBERON:0004120,3.61e-08,315;UBERON:0006603,3.61e-08,315;UBERON:0000178,9.20e-08,15;UBERON:0000179,9.20e-08,15;UBERON:0000463,9.20e-08,15 | |||
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| ||
|short_description=p5@PLDN | |||
}} | }} |
Latest revision as of 20:41, 17 September 2015
Short description: | p5@PLDN |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_5_at_PLDN_5end |
Coexpression cluster: | C7_CD14_Eosinophils_Neutrophils_Smooth_Basophils_Macrophage_Mast |
Association with transcript: | -139bp_to_uc001zvs.2_5end |
EntrezGene: | PLDN |
HGNC: | 8549 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
myeloid leukocyte | 3.71e-49 | 72 |
granulocyte monocyte progenitor cell | 7.47e-45 | 67 |
macrophage dendritic cell progenitor | 3.40e-44 | 61 |
monopoietic cell | 1.82e-42 | 59 |
monocyte | 1.82e-42 | 59 |
monoblast | 1.82e-42 | 59 |
promonocyte | 1.82e-42 | 59 |
myeloid lineage restricted progenitor cell | 7.69e-42 | 66 |
myeloid cell | 7.72e-40 | 108 |
common myeloid progenitor | 7.72e-40 | 108 |
defensive cell | 3.10e-38 | 48 |
phagocyte | 3.10e-38 | 48 |
classical monocyte | 2.85e-35 | 42 |
CD14-positive, CD16-negative classical monocyte | 2.85e-35 | 42 |
leukocyte | 4.27e-26 | 136 |
hematopoietic stem cell | 1.18e-24 | 168 |
hematopoietic oligopotent progenitor cell | 2.66e-24 | 161 |
hematopoietic multipotent progenitor cell | 2.66e-24 | 161 |
hematopoietic cell | 3.75e-24 | 177 |
hematopoietic lineage restricted progenitor cell | 3.33e-22 | 120 |
nongranular leukocyte | 6.24e-21 | 115 |
mesenchymal cell | 3.49e-09 | 354 |
connective tissue cell | 2.75e-08 | 361 |
granulocyte | 9.20e-08 | 8 |
motile cell | 1.33e-07 | 386 |
blood cell | 2.98e-07 | 11 |
multi fate stem cell | 3.54e-07 | 427 |
intermediate monocyte | 7.24e-07 | 9 |
CD14-positive, CD16-positive monocyte | 7.24e-07 | 9 |
Ontology term | p-value | n |
---|---|---|
hematopoietic system | 2.02e-40 | 98 |
blood island | 2.02e-40 | 98 |
hemolymphoid system | 3.23e-39 | 108 |
bone marrow | 3.98e-39 | 76 |
bone element | 7.06e-37 | 82 |
skeletal element | 3.77e-33 | 90 |
immune system | 4.28e-32 | 93 |
skeletal system | 2.02e-31 | 100 |
lateral plate mesoderm | 3.91e-17 | 203 |
musculoskeletal system | 2.98e-15 | 167 |
connective tissue | 2.52e-08 | 371 |
mesoderm | 3.61e-08 | 315 |
mesoderm-derived structure | 3.61e-08 | 315 |
presumptive mesoderm | 3.61e-08 | 315 |
blood | 9.20e-08 | 15 |
haemolymphatic fluid | 9.20e-08 | 15 |
organism substance | 9.20e-08 | 15 |