FFCP PHASE1:Hg19::chr1:17380600..17380615,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=6390 | |EntrezGene=6390 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=10681 | |HGNC=10681 | ||
|TSSclassifier=strong | |||
|UniProt=P21912 | |UniProt=P21912 | ||
|association_with_transcript=49bp_to_ENST00000375499,NM_003000,uc001bae.2_5end | |association_with_transcript=49bp_to_ENST00000375499,NM_003000,uc001bae.2_5end | ||
|cluster_id=chr1:17380600..17380615,- | |||
|description=CAGE_peak_2_at_SDHB_5end | |description=CAGE_peak_2_at_SDHB_5end | ||
|id=chr1:17380600..17380615,- | |id=chr1:17380600..17380615,- | ||
|ontology_enrichment_celltype=CL:0000548!6.98e-27!679;CL:0000004!6.98e-27!679;CL:0000255!6.98e-27!679;CL:0000012!1.97e-26!682;CL:0002194!8.77e-26!63;CL:0000576!8.77e-26!63;CL:0000040!8.77e-26!63;CL:0000559!8.77e-26!63;CL:0002009!1.34e-24!65;CL:0000063!2.51e-22!578;CL:0000860!8.73e-22!45;CL:0002057!8.01e-21!42;CL:0000766!1.19e-20!76;CL:0000839!3.54e-19!70;CL:0000557!3.93e-19!71;CL:0000144!1.94e-17!625;CL:0002371!8.74e-17!591;CL:0000763!1.77e-16!112;CL:0000049!1.77e-16!112;CL:0000003!3.09e-15!722;CL:0000066!1.03e-10!254;CL:0000048!4.33e-09!430;CL:0000723!8.67e-09!436;CL:0000222!1.42e-08!119;CL:0002087!4.17e-08!119;CL:0000034!6.04e-08!444;CL:0000115!2.02e-07!35;CL:0000220!2.44e-07!246;CL:0002321!4.45e-07!248;CL:0002032!7.98e-07!165;CL:0000837!7.98e-07!165 | |ontology_enrichment_celltype=CL:0000548!6.98e-27!679;CL:0000004!6.98e-27!679;CL:0000255!6.98e-27!679;CL:0000012!1.97e-26!682;CL:0002194!8.77e-26!63;CL:0000576!8.77e-26!63;CL:0000040!8.77e-26!63;CL:0000559!8.77e-26!63;CL:0002009!1.34e-24!65;CL:0000063!2.51e-22!578;CL:0000860!8.73e-22!45;CL:0002057!8.01e-21!42;CL:0000766!1.19e-20!76;CL:0000839!3.54e-19!70;CL:0000557!3.93e-19!71;CL:0000144!1.94e-17!625;CL:0002371!8.74e-17!591;CL:0000763!1.77e-16!112;CL:0000049!1.77e-16!112;CL:0000003!3.09e-15!722;CL:0000066!1.03e-10!254;CL:0000048!4.33e-09!430;CL:0000723!8.67e-09!436;CL:0000222!1.42e-08!119;CL:0002087!4.17e-08!119;CL:0000034!6.04e-08!444;CL:0000115!2.02e-07!35;CL:0000220!2.44e-07!246;CL:0002321!4.45e-07!248;CL:0002032!7.98e-07!165;CL:0000837!7.98e-07!165 | ||
|ontology_enrichment_celltype_v019=CL:0000473;1.14e-16;39!CL:0000234;1.14e-16;39!CL:0000860;2.78e-16;33!CL:0002057;2.78e-16;33!CL:0000576;1.04e-13;48!CL:0000766;1.55e-09;69!CL:0000115;8.58e-07;36 | |||
|ontology_enrichment_celltype_v019_2=CL:0000473,1.89e-24,48;CL:0000234,1.89e-24,48;CL:0002194,2.21e-24,59;CL:0000576,2.21e-24,59;CL:0000040,2.21e-24,59;CL:0000559,2.21e-24,59;CL:0002009,3.39e-23,61;CL:0000860,7.98e-21,42;CL:0002057,7.98e-21,42;CL:0000766,2.85e-19,72;CL:0000839,8.22e-18,66;CL:0000557,9.08e-18,67;CL:0000763,3.07e-15,108;CL:0000049,3.07e-15,108;CL:0000066,6.26e-11,253;CL:0000222,1.27e-08,121;CL:0000048,3.43e-08,427;CL:0000723,6.51e-08,433;CL:0000115,8.44e-08,36;CL:0002087,3.24e-07,115;CL:0002321,3.63e-07,250;CL:0000034,4.03e-07,441 | |||
|ontology_enrichment_development_v019=CL:0002057;1.94e-15;42 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000926!2.07e-18!448;UBERON:0004120!2.07e-18!448;UBERON:0006603!2.07e-18!448;UBERON:0002371!3.24e-17!80;UBERON:0003081!8.73e-17!216;UBERON:0002405!1.63e-16!115;UBERON:0001474!4.59e-16!86;UBERON:0002193!8.03e-14!112;UBERON:0002390!8.79e-14!102;UBERON:0003061!8.79e-14!102;UBERON:0002204!7.75e-12!167;UBERON:0004765!1.56e-11!101;UBERON:0001434!1.56e-11!101;UBERON:0000055!1.11e-07!69;UBERON:0001981!2.48e-07!60;UBERON:0007500!2.48e-07!60;UBERON:0004537!2.48e-07!60;UBERON:0006965!2.48e-07!60;UBERON:0001637!3.38e-07!42;UBERON:0003509!3.38e-07!42;UBERON:0004572!3.38e-07!42;UBERON:0002049!9.80e-07!79;UBERON:0007798!9.80e-07!79 | |ontology_enrichment_uberon=UBERON:0000926!2.07e-18!448;UBERON:0004120!2.07e-18!448;UBERON:0006603!2.07e-18!448;UBERON:0002371!3.24e-17!80;UBERON:0003081!8.73e-17!216;UBERON:0002405!1.63e-16!115;UBERON:0001474!4.59e-16!86;UBERON:0002193!8.03e-14!112;UBERON:0002390!8.79e-14!102;UBERON:0003061!8.79e-14!102;UBERON:0002204!7.75e-12!167;UBERON:0004765!1.56e-11!101;UBERON:0001434!1.56e-11!101;UBERON:0000055!1.11e-07!69;UBERON:0001981!2.48e-07!60;UBERON:0007500!2.48e-07!60;UBERON:0004537!2.48e-07!60;UBERON:0006965!2.48e-07!60;UBERON:0001637!3.38e-07!42;UBERON:0003509!3.38e-07!42;UBERON:0004572!3.38e-07!42;UBERON:0002049!9.80e-07!79;UBERON:0007798!9.80e-07!79 | ||
|ontology_enrichment_uberon_v019= | |||
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| ||
|short_description=p2@SDHB | |short_description=p2@SDHB | ||
}} | }} |
Latest revision as of 18:13, 18 September 2015
Short description: | p2@SDHB |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_SDHB_5end |
Coexpression cluster: | NA |
Association with transcript: | 49bp_to_ENST00000375499, NM_003000, uc001bae.2_5end |
EntrezGene: | SDHB |
HGNC: | 10681 |
UniProt: | P21912 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
defensive cell | 1.89e-24 | 48 |
phagocyte | 1.89e-24 | 48 |
monopoietic cell | 2.21e-24 | 59 |
monocyte | 2.21e-24 | 59 |
monoblast | 2.21e-24 | 59 |
promonocyte | 2.21e-24 | 59 |
macrophage dendritic cell progenitor | 3.39e-23 | 61 |
classical monocyte | 7.98e-21 | 42 |
CD14-positive, CD16-negative classical monocyte | 7.98e-21 | 42 |
myeloid leukocyte | 2.85e-19 | 72 |
myeloid lineage restricted progenitor cell | 8.22e-18 | 66 |
granulocyte monocyte progenitor cell | 9.08e-18 | 67 |
myeloid cell | 3.07e-15 | 108 |
common myeloid progenitor | 3.07e-15 | 108 |
epithelial cell | 6.26e-11 | 253 |
mesodermal cell | 1.27e-08 | 121 |
multi fate stem cell | 3.43e-08 | 427 |
somatic stem cell | 6.51e-08 | 433 |
endothelial cell | 8.44e-08 | 36 |
nongranular leukocyte | 3.24e-07 | 115 |
embryonic cell | 3.63e-07 | 250 |
stem cell | 4.03e-07 | 441 |
Ontology term | p-value | n |
---|---|---|
lateral plate mesoderm | 6.66e-16 | 203 |
bone marrow | 6.74e-16 | 76 |
bone element | 8.77e-15 | 82 |
mesoderm | 4.60e-14 | 315 |
mesoderm-derived structure | 4.60e-14 | 315 |
presumptive mesoderm | 4.60e-14 | 315 |
immune system | 1.27e-13 | 93 |
skeletal element | 6.81e-13 | 90 |
hemolymphoid system | 1.16e-12 | 108 |
hematopoietic system | 1.33e-12 | 98 |
blood island | 1.33e-12 | 98 |
musculoskeletal system | 6.88e-10 | 167 |
skeletal system | 1.77e-09 | 100 |
vessel | 2.09e-07 | 68 |
artery | 3.38e-07 | 42 |
arterial blood vessel | 3.38e-07 | 42 |
arterial system | 3.38e-07 | 42 |
epithelial tube open at both ends | 4.69e-07 | 59 |
blood vessel | 4.69e-07 | 59 |
blood vasculature | 4.69e-07 | 59 |
vascular cord | 4.69e-07 | 59 |
epithelial tube | 7.42e-07 | 117 |