FFCP PHASE1:Hg19::chr20:37230443..37230457,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=343578 | |EntrezGene=343578 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=16226 | |HGNC=16226 | ||
|TSSclassifier=strong | |||
|UniProt=Q5TG30 | |UniProt=Q5TG30 | ||
|association_with_transcript=-119bp_to_ENST00000373345,NM_001164431_5end | |association_with_transcript=-119bp_to_ENST00000373345,NM_001164431_5end | ||
|cluster_id=chr20:37230443..37230457,+ | |||
|coexpression_cluster_id=C4031 | |||
|description=CAGE_peak_3_at_ARHGAP40_5end | |description=CAGE_peak_3_at_ARHGAP40_5end | ||
|id=chr20:37230443..37230457,+ | |id=chr20:37230443..37230457,+ | ||
|ontology_enrichment_celltype=CL:0000066!7.77e-25!254;CL:0002076!2.47e-11!43;CL:0000039!3.62e-11!7;CL:0000586!3.62e-11!7;CL:0002368!4.38e-11!13;CL:0000223!4.40e-09!59;CL:1000449!5.96e-08!16;CL:1000507!2.38e-07!12;CL:1000494!2.38e-07!12;CL:1000497!8.47e-07!18;CL:0002518!8.47e-07!18 | |ontology_enrichment_celltype=CL:0000066!7.77e-25!254;CL:0002076!2.47e-11!43;CL:0000039!3.62e-11!7;CL:0000586!3.62e-11!7;CL:0002368!4.38e-11!13;CL:0000223!4.40e-09!59;CL:1000449!5.96e-08!16;CL:1000507!2.38e-07!12;CL:1000494!2.38e-07!12;CL:1000497!8.47e-07!18;CL:0002518!8.47e-07!18 | ||
|ontology_enrichment_celltype_v019=CL:0002368;1.66e-14;13!CL:0000244;1.65e-12;4!CL:0000731;1.65e-12;4!CL:0000039;1.68e-12;7!CL:0000586;1.68e-12;7!CL:0002536;2.34e-11;2!CL:0000239;7.44e-08;3!CL:1000615;7.44e-08;3!CL:0002306;7.44e-08;3!CL:0002681;4.46e-07;12!CL:0002584;4.46e-07;12!CL:0000349;8.74e-07;19 | |||
|ontology_enrichment_celltype_v019_2=CL:0002368,1.99e-14,13;CL:0000039,1.09e-12,7;CL:0000586,1.09e-12,7;CL:0000244,1.42e-12,4;CL:0000731,1.42e-12,4;CL:0000066,1.19e-11,253;CL:0002536,4.65e-11,2;CL:0000239,7.72e-08,3;CL:1000615,7.72e-08,3;CL:0002306,7.72e-08,3;CL:0002681,4.61e-07,12;CL:0002584,4.61e-07,12;CL:0000313,8.97e-07,1 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:1749!8.15e-09!14;DOID:305!1.07e-08!106;DOID:0050687!3.32e-07!143 | |ontology_enrichment_disease=DOID:1749!8.15e-09!14;DOID:305!1.07e-08!106;DOID:0050687!3.32e-07!143 | ||
|ontology_enrichment_disease_v019=DOID:4556;7.44e-08;3 | |||
|ontology_enrichment_disease_v019_2=DOID:4556,7.20e-08,3;DOID:2152,8.97e-07,1 | |||
|ontology_enrichment_uberon=UBERON:0000464!1.00e-11!104;UBERON:0000466!1.61e-10!126;UBERON:0005178!1.27e-09!34;UBERON:0002224!1.27e-09!34;UBERON:0005181!3.31e-09!35;UBERON:0006555!3.65e-09!17;UBERON:0005103!3.65e-09!17;UBERON:0000083!3.65e-09!17;UBERON:0009201!3.65e-09!17;UBERON:0004819!3.65e-09!17;UBERON:0006553!3.65e-09!17;UBERON:0003074!3.65e-09!17;UBERON:0003060!3.65e-09!17;UBERON:0000065!5.30e-09!53;UBERON:0004876!7.87e-09!20;UBERON:0000058!1.21e-08!26;UBERON:0000080!1.71e-08!18;UBERON:0002120!1.71e-08!18;UBERON:0004875!1.71e-08!18;UBERON:0005721!1.71e-08!18;UBERON:0005754!1.71e-08!18;UBERON:0007297!1.71e-08!18;UBERON:0006554!1.86e-08!44;UBERON:0004119!3.72e-08!169;UBERON:0000925!3.72e-08!169;UBERON:0006595!3.72e-08!169;UBERON:0001008!3.78e-08!45;UBERON:0000344!4.75e-08!12;UBERON:0004211!5.96e-08!16;UBERON:0001285!5.96e-08!16;UBERON:0007684!5.96e-08!16;UBERON:0003220!5.96e-08!16;UBERON:0004208!5.96e-08!16;UBERON:0005177!9.37e-08!107;UBERON:0005631!1.01e-07!14;UBERON:0000158!1.01e-07!14;UBERON:0003126!1.25e-07!7;UBERON:0001005!1.25e-07!7;UBERON:0003064!2.04e-07!37;UBERON:0007196!2.10e-07!14;UBERON:0001558!2.10e-07!14;UBERON:0009773!2.38e-07!12;UBERON:0001231!2.38e-07!12;UBERON:0004810!2.38e-07!12;UBERON:0003887!7.00e-07!21 | |ontology_enrichment_uberon=UBERON:0000464!1.00e-11!104;UBERON:0000466!1.61e-10!126;UBERON:0005178!1.27e-09!34;UBERON:0002224!1.27e-09!34;UBERON:0005181!3.31e-09!35;UBERON:0006555!3.65e-09!17;UBERON:0005103!3.65e-09!17;UBERON:0000083!3.65e-09!17;UBERON:0009201!3.65e-09!17;UBERON:0004819!3.65e-09!17;UBERON:0006553!3.65e-09!17;UBERON:0003074!3.65e-09!17;UBERON:0003060!3.65e-09!17;UBERON:0000065!5.30e-09!53;UBERON:0004876!7.87e-09!20;UBERON:0000058!1.21e-08!26;UBERON:0000080!1.71e-08!18;UBERON:0002120!1.71e-08!18;UBERON:0004875!1.71e-08!18;UBERON:0005721!1.71e-08!18;UBERON:0005754!1.71e-08!18;UBERON:0007297!1.71e-08!18;UBERON:0006554!1.86e-08!44;UBERON:0004119!3.72e-08!169;UBERON:0000925!3.72e-08!169;UBERON:0006595!3.72e-08!169;UBERON:0001008!3.78e-08!45;UBERON:0000344!4.75e-08!12;UBERON:0004211!5.96e-08!16;UBERON:0001285!5.96e-08!16;UBERON:0007684!5.96e-08!16;UBERON:0003220!5.96e-08!16;UBERON:0004208!5.96e-08!16;UBERON:0005177!9.37e-08!107;UBERON:0005631!1.01e-07!14;UBERON:0000158!1.01e-07!14;UBERON:0003126!1.25e-07!7;UBERON:0001005!1.25e-07!7;UBERON:0003064!2.04e-07!37;UBERON:0007196!2.10e-07!14;UBERON:0001558!2.10e-07!14;UBERON:0009773!2.38e-07!12;UBERON:0001231!2.38e-07!12;UBERON:0004810!2.38e-07!12;UBERON:0003887!7.00e-07!21 | ||
|ontology_enrichment_uberon_v019=UBERON:0000305;3.04e-12;7!UBERON:0000365;4.19e-10;5!UBERON:0005631;1.33e-08;10!UBERON:0000158;1.33e-08;10!UBERON:0005910;1.70e-08;6!UBERON:0006853;7.44e-08;3!UBERON:0007685;7.44e-08;3!UBERON:0004134;7.44e-08;3!UBERON:0006554;1.15e-07;30!UBERON:0001008;1.15e-07;30!UBERON:0001225;4.46e-07;12!UBERON:0008987;4.46e-07;12!UBERON:0001301;5.57e-07;1 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000305,4.04e-12,7;UBERON:0004871,1.27e-10,8;UBERON:0000365,3.71e-10,5;UBERON:0005631,3.26e-09,14;UBERON:0000158,3.26e-09,14;UBERON:0005910,1.54e-08,6;UBERON:0006555,5.05e-08,16;UBERON:0004819,5.05e-08,16;UBERON:0006853,7.72e-08,3;UBERON:0007685,7.72e-08,3;UBERON:0004134,7.72e-08,3;UBERON:0006554,1.31e-07,47;UBERON:0001008,2.03e-07,48;UBERON:0001225,4.61e-07,12;UBERON:0008987,4.61e-07,12;UBERON:0001301,6.08e-07,1;UBERON:0004911,8.97e-07,1 | |||
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| ||
|short_description=p3@ARHGAP40 | |short_description=p3@ARHGAP40 | ||
}} | }} |
Latest revision as of 03:51, 16 September 2015
Short description: | p3@ARHGAP40 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_ARHGAP40_5end |
Coexpression cluster: | C4031_Small_teratocarcinoma_epididymis_Placental_clear_amniotic_Bronchial |
Association with transcript: | -119bp_to_ENST00000373345, NM_001164431_5end |
EntrezGene: | ARHGAP40 |
HGNC: | 16226 |
UniProt: | Q5TG30 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
respiratory epithelial cell | 1.99e-14 | 13 |
germ line cell | 1.09e-12 | 7 |
germ cell | 1.09e-12 | 7 |
transitional epithelial cell | 1.42e-12 | 4 |
urothelial cell | 1.42e-12 | 4 |
epithelial cell | 1.19e-11 | 253 |
amniotic epithelial cell | 4.65e-11 | 2 |
brush border epithelial cell | 7.72e-08 | 3 |
kidney cortex tubule cell | 7.72e-08 | 3 |
epithelial cell of proximal tubule | 7.72e-08 | 3 |
kidney cortical cell | 4.61e-07 | 12 |
renal cortical epithelial cell | 4.61e-07 | 12 |
serous secreting cell | 8.97e-07 | 1 |
Ontology term | p-value | n |
---|---|---|
amnion | 4.04e-12 | 7 |
somatic layer of lateral plate mesoderm | 1.27e-10 | 8 |
urothelium | 3.71e-10 | 5 |
extraembryonic membrane | 3.26e-09 | 14 |
membranous layer | 3.26e-09 | 14 |
transitional epithelium | 1.54e-08 | 6 |
excretory tube | 5.05e-08 | 16 |
kidney epithelium | 5.05e-08 | 16 |
renal cortex tubule | 7.72e-08 | 3 |
region of nephron tubule | 7.72e-08 | 3 |
proximal tubule | 7.72e-08 | 3 |
urinary system structure | 1.31e-07 | 47 |
renal system | 2.03e-07 | 48 |
cortex of kidney | 4.61e-07 | 12 |
renal parenchyma | 4.61e-07 | 12 |
epididymis | 6.08e-07 | 1 |
epithelium of female gonad | 8.97e-07 | 1 |
Ontology term | p-value | n |
---|---|---|
lung large cell carcinoma | 7.20e-08 | 3 |
ovary epithelial cancer | 8.97e-07 | 1 |