FF:11533-120A3: Difference between revisions
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{{f5samples | {{f5samples | ||
|ancestors_in_anatomy_facet=UBERON: | |DRA_sample_Accession=CAGE@SAMD00005540 | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL: | |DRA_sample_Accession_RNASeq=sRNA-Seq@SAMD00005540 | ||
|accession_numbers=CAGE;DRX008107;DRR008979;DRZ000404;DRZ001789;DRZ011754;DRZ013139 | |||
|accession_numbers_RNASeq=sRNA-Seq;DRX036990;DRR041356;DRZ006998 | |||
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000305,UBERON:0004121,UBERON:0000064,UBERON:0000062,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0004923,UBERON:0005631,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0000478,UBERON:0010317,UBERON:0000158 | |||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000066,CL:0002371,CL:0000349,CL:0000255,CL:0002536 | |||
|ancestors_in_disease_facet= | |ancestors_in_disease_facet= | ||
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000001,FF:0000009 | |||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|data_phase=2 | |||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score=chr5:153857778..153857794,-!p1@HAND1!2.46!287.03!HAND1;;chr2:19558373..19558392,-!p1@OSR1!2.11!337.06!OSR1;;chr10:8096772..8096787,+!p2@GATA3!2.00!114.68!GATA3;;chr10:8096631..8096660,+!p1@GATA3!1.94!103.32!GATA3;;chr3:111314186..111314204,-!p1@ZBED2!1.92!82.13!ZBED2;;chr6:10415276..10415341,-!p2@TFAP2A!1.87!88.03!TFAP2A;;chr6:10412600..10412637,-!p1@TFAP2A!1.69!78.64!TFAP2A;;chr8:102504651..102504683,+!p1@GRHL2!1.68!47.40!GRHL2;;chr1:209979467..209979494,-!p1@IRF6!1.57!40.41!IRF6;;chr8:49833948..49833973,-!p2@SNAI2!1.48!178.69!SNAI2;;chr5:2751762..2751784,-!p1@IRX2!1.48!29.05!IRX2;;chr8:102504979..102505010,+!p2@GRHL2!1.47!28.18!GRHL2;;chr4:174450089..174450153,-!p2@HAND2!1.47!28.18!HAND2;;chr8:80679993..80680011,-!p1@HEY1!1.46!40.19!HEY1;;chr4:188916918..188916942,+!p1@ZFP42!1.45!26.87!ZFP42;;chr20:55204351..55204377,+!p1@TFAP2C!1.44!33.20!TFAP2C;;chr8:102504690..102504704,+!p3@GRHL2!1.43!25.99!GRHL2;;chr2:46524897..46524911,+!p2@EPAS1!1.42!69.68!EPAS1;;chr17:7493405..7493419,-!p1@SOX15!1.35!21.63!SOX15;;chr8:49833978..49833996,-!p1@SNAI2!1.33!408.49!SNAI2;;chr6:10415484..10415508,-!p3@TFAP2A!1.32!20.10!TFAP2A;;chr5:153857800..153857812,-!p2@HAND1!1.30!18.79!HAND1;;chr4:174451370..174451387,-!p1@HAND2!1.29!18.35!HAND2;;chr20:39317868..39317884,-!p1@MAFB!1.21!177.81!MAFB;;chr3:111314230..111314241,-!p2@ZBED2!1.20!14.85!ZBED2;;chr19:46801639..46801699,+!p1@HIF3A!1.16!13.54!HIF3A;;chr10:8100691..8100732,+!p5@GATA3!1.16!13.54!GATA3;;chr6:10412576..10412599,-!p5@TFAP2A!1.15!13.11!TFAP2A;;chr12:66218836..66218888,+!p1@HMGA2!1.12!114.24!HMGA2;;chr6:10412392..10412409,-!p4@TFAP2A!1.08!12.67!TFAP2A;;chrY:21906594..21906622,-!p1@KDM5D!1.08!11.14!KDM5D;;chr5:3595977..3595999,+!p1@IRX1!1.08!10.92!IRX1;;chr5:2751785..2751808,-!p2@IRX2!1.06!10.49!IRX2;;chr2:5832508..5832524,+!p1@SOX11!1.06!10.49!SOX11;;chr11:113930425..113930471,+!p1@ZBTB16!1.05!14.85!ZBTB16;;chr16:73093174..73093209,-!p3@ZFHX3!1.05!13.76!ZFHX3;;chr3:12330560..12330579,+!p1@PPARG!1.00!10.27!PPARG;;chr16:67881588..67881612,-!p2@CENPT!0.99!12.01!CENPT;;chr10:8095593..8095625,+!p3@GATA3!0.99!10.49!GATA3;;chr5:3595961..3595975,+!p3@IRX1!0.97!8.30!IRX1;;chr5:3595934..3595957,+!p2@IRX1!0.96!8.08!IRX1;;chr20:42295745..42295765,+!p1@MYBL2!0.95!132.81!MYBL2;;chr17:41623692..41623715,-!p1@ETV4!0.95!34.51!ETV4;;chr5:153857819..153857824,-!p3@HAND1!0.95!7.86!HAND1;;chr11:46299199..46299233,+!p1@CREB3L1!0.94!41.29!CREB3L1;;chr6:10413188..10413249,-!p7@TFAP2A!0.94!7.65!TFAP2A;;chr2:19558327..19558334,-!p2@OSR1!0.94!7.65!OSR1;;chr2:16080659..16080685,+!p1@MYCN!0.93!7.43!MYCN;;chr19:926055..926068,+!p2@ARID3A!0.92!16.38!ARID3A;;chr2:231084820..231084836,-!p5@SP110!0.91!8.30!SP110;;chr6:126240380..126240430,+!p2@NCOA7!0.89!18.13!NCOA7;;chr2:46524878..46524891,+!p3@EPAS1!0.89!12.23!EPAS1;;chr8:80680024..80680046,-!p2@HEY1!0.89!7.65!HEY1;;chr6:126240356..126240379,+!p7@NCOA7!0.88!8.08!NCOA7;;chr4:299227..299272,-!p1@ZNF732!0.87!6.33!ZNF732;;chr16:86612320..86612394,+!p1@FOXL1!0.87!6.33!FOXL1;;chr19:45908292..45908374,-!p1@PPP1R13L!0.85!56.79!PPP1R13L;;chr9:110251836..110251887,-!p4@KLF4!0.85!8.30!KLF4;;chr1:38512457..38512474,-!p1@POU3F1!0.84!6.55!POU3F1;;chr5:174151553..174151610,+!p1@MSX2!0.82!9.61!MSX2;;chr15:96869511..96869525,+!p16@NR2F2!0.82!6.33!NR2F2;;chr11:46299539..46299620,+!p2@CREB3L1!0.81!9.61!CREB3L1;;chr6:85473156..85473210,-!p2@TBX18!0.81!6.77!TBX18;;chr16:31076332..31076388,-!p3@ZNF668!0.81!5.46!ZNF668;;chr19:46800289..46800327,+!p2@HIF3A!0.81!5.46!HIF3A;;chr20:18038521..18038571,-!p1@OVOL2!0.81!5.46!OVOL2;;chr17:7492684..7492778,-!p2@SOX15!0.80!11.80!SOX15;;chr12:66218598..66218645,+!p2@HMGA2!0.78!24.90!HMGA2;;chr22:24093154..24093183,-!p2@ZNF70!0.78!5.02!ZNF70;;chr4:149366111..149366128,-!p7@NR3C2!0.78!5.02!NR3C2;;chr7:138666053..138666146,-!p1@KIAA1549!0.77!21.84!KIAA1549;;chr9:110252035..110252057,-!p1@KLF4!0.76!84.10!KLF4;;chr19:926001..926046,+!p1@ARID3A!0.76!18.13!ARID3A;;chr3:52001426..52001447,-!p3@PCBP4!0.76!14.64!PCBP4;;chrX:56258844..56258882,+!p1@KLF8!0.76!6.77!KLF8;;chr9:110250697..110250738,-!p2@KLF4!0.76!5.68!KLF4;;chr8:55370487..55370503,+!p1@SOX17!0.76!4.81!SOX17;;chr1:209979411..209979433,-!p2@IRF6!0.76!4.81!IRF6;;chr2:60780607..60780624,-!p2@BCL11A!0.75!15.29!BCL11A;;chr11:113930291..113930339,+!p2@ZBTB16!0.75!7.86!ZBTB16;;chr6:10415263..10415274,-!p8@TFAP2A!0.75!4.59!TFAP2A;;chr20:42295713..42295738,+!p2@MYBL2!0.74!29.71!MYBL2;;chr2:46524537..46524553,+!p1@EPAS1!0.73!488.43!EPAS1;;chr13:73633131..73633149,+!p1@KLF5!0.73!52.21!KLF5;;chr19:17356189..17356221,-!p2@NR2F6!0.73!7.65!NR2F6;;chr14:75988771..75988826,+!p1@BATF!0.73!6.12!BATF;;chr8:102504932..102504952,+!p4@GRHL2!0.73!4.37!GRHL2;;chr3:52001448..52001478,-!p2@PCBP4!0.72!67.06!PCBP4;;chr18:6414884..6414942,-!p1@L3MBTL4!0.72!5.46!L3MBTL4;;chr3:24536253..24536328,-!p1@THRB!0.71!8.30!THRB;;chr17:41622925..41622976,-!p3@ETV4!0.71!6.55!ETV4;;chr12:54447637..54447659,+!p4@HOXC4!0.71!4.15!HOXC4;;chr12:66218255..66218304,+!p3@HMGA2!0.69!11.58!HMGA2;;chr1:151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| |expression_enrichment_score=chr5:153857778..153857794,-!p1@HAND1!2.46!287.03!HAND1;;chr2:19558373..19558392,-!p1@OSR1!2.11!337.06!OSR1;;chr10:8096772..8096787,+!p2@GATA3!2.00!114.68!GATA3;;chr10:8096631..8096660,+!p1@GATA3!1.94!103.32!GATA3;;chr3:111314186..111314204,-!p1@ZBED2!1.92!82.13!ZBED2;;chr6:10415276..10415341,-!p2@TFAP2A!1.87!88.03!TFAP2A;;chr6:10412600..10412637,-!p1@TFAP2A!1.69!78.64!TFAP2A;;chr8:102504651..102504683,+!p1@GRHL2!1.68!47.40!GRHL2;;chr1:209979467..209979494,-!p1@IRF6!1.57!40.41!IRF6;;chr8:49833948..49833973,-!p2@SNAI2!1.48!178.69!SNAI2;;chr5:2751762..2751784,-!p1@IRX2!1.48!29.05!IRX2;;chr8:102504979..102505010,+!p2@GRHL2!1.47!28.18!GRHL2;;chr4:174450089..174450153,-!p2@HAND2!1.47!28.18!HAND2;;chr8:80679993..80680011,-!p1@HEY1!1.46!40.19!HEY1;;chr4:188916918..188916942,+!p1@ZFP42!1.45!26.87!ZFP42;;chr20:55204351..55204377,+!p1@TFAP2C!1.44!33.20!TFAP2C;;chr8:102504690..102504704,+!p3@GRHL2!1.43!25.99!GRHL2;;chr2:46524897..46524911,+!p2@EPAS1!1.42!69.68!EPAS1;;chr17:7493405..7493419,-!p1@SOX15!1.35!21.63!SOX15;;chr8:49833978..49833996,-!p1@SNAI2!1.33!408.49!SNAI2;;chr6:10415484..10415508,-!p3@TFAP2A!1.32!20.10!TFAP2A;;chr5:153857800..153857812,-!p2@HAND1!1.30!18.79!HAND1;;chr4:174451370..174451387,-!p1@HAND2!1.29!18.35!HAND2;;chr20:39317868..39317884,-!p1@MAFB!1.21!177.81!MAFB;;chr3:111314230..111314241,-!p2@ZBED2!1.20!14.85!ZBED2;;chr19:46801639..46801699,+!p1@HIF3A!1.16!13.54!HIF3A;;chr10:8100691..8100732,+!p5@GATA3!1.16!13.54!GATA3;;chr6:10412576..10412599,-!p5@TFAP2A!1.15!13.11!TFAP2A;;chr12:66218836..66218888,+!p1@HMGA2!1.12!114.24!HMGA2;;chr6:10412392..10412409,-!p4@TFAP2A!1.08!12.67!TFAP2A;;chrY:21906594..21906622,-!p1@KDM5D!1.08!11.14!KDM5D;;chr5:3595977..3595999,+!p1@IRX1!1.08!10.92!IRX1;;chr5:2751785..2751808,-!p2@IRX2!1.06!10.49!IRX2;;chr2:5832508..5832524,+!p1@SOX11!1.06!10.49!SOX11;;chr11:113930425..113930471,+!p1@ZBTB16!1.05!14.85!ZBTB16;;chr16:73093174..73093209,-!p3@ZFHX3!1.05!13.76!ZFHX3;;chr3:12330560..12330579,+!p1@PPARG!1.00!10.27!PPARG;;chr16:67881588..67881612,-!p2@CENPT!0.99!12.01!CENPT;;chr10:8095593..8095625,+!p3@GATA3!0.99!10.49!GATA3;;chr5:3595961..3595975,+!p3@IRX1!0.97!8.30!IRX1;;chr5:3595934..3595957,+!p2@IRX1!0.96!8.08!IRX1;;chr20:42295745..42295765,+!p1@MYBL2!0.95!132.81!MYBL2;;chr17:41623692..41623715,-!p1@ETV4!0.95!34.51!ETV4;;chr5:153857819..153857824,-!p3@HAND1!0.95!7.86!HAND1;;chr11:46299199..46299233,+!p1@CREB3L1!0.94!41.29!CREB3L1;;chr6:10413188..10413249,-!p7@TFAP2A!0.94!7.65!TFAP2A;;chr2:19558327..19558334,-!p2@OSR1!0.94!7.65!OSR1;;chr2:16080659..16080685,+!p1@MYCN!0.93!7.43!MYCN;;chr19:926055..926068,+!p2@ARID3A!0.92!16.38!ARID3A;;chr2:231084820..231084836,-!p5@SP110!0.91!8.30!SP110;;chr6:126240380..126240430,+!p2@NCOA7!0.89!18.13!NCOA7;;chr2:46524878..46524891,+!p3@EPAS1!0.89!12.23!EPAS1;;chr8:80680024..80680046,-!p2@HEY1!0.89!7.65!HEY1;;chr6:126240356..126240379,+!p7@NCOA7!0.88!8.08!NCOA7;;chr4:299227..299272,-!p1@ZNF732!0.87!6.33!ZNF732;;chr16:86612320..86612394,+!p1@FOXL1!0.87!6.33!FOXL1;;chr19:45908292..45908374,-!p1@PPP1R13L!0.85!56.79!PPP1R13L;;chr9:110251836..110251887,-!p4@KLF4!0.85!8.30!KLF4;;chr1:38512457..38512474,-!p1@POU3F1!0.84!6.55!POU3F1;;chr5:174151553..174151610,+!p1@MSX2!0.82!9.61!MSX2;;chr15:96869511..96869525,+!p16@NR2F2!0.82!6.33!NR2F2;;chr11:46299539..46299620,+!p2@CREB3L1!0.81!9.61!CREB3L1;;chr6:85473156..85473210,-!p2@TBX18!0.81!6.77!TBX18;;chr16:31076332..31076388,-!p3@ZNF668!0.81!5.46!ZNF668;;chr19:46800289..46800327,+!p2@HIF3A!0.81!5.46!HIF3A;;chr20:18038521..18038571,-!p1@OVOL2!0.81!5.46!OVOL2;;chr17:7492684..7492778,-!p2@SOX15!0.80!11.80!SOX15;;chr12:66218598..66218645,+!p2@HMGA2!0.78!24.90!HMGA2;;chr22:24093154..24093183,-!p2@ZNF70!0.78!5.02!ZNF70;;chr4:149366111..149366128,-!p7@NR3C2!0.78!5.02!NR3C2;;chr7:138666053..138666146,-!p1@KIAA1549!0.77!21.84!KIAA1549;;chr9:110252035..110252057,-!p1@KLF4!0.76!84.10!KLF4;;chr19:926001..926046,+!p1@ARID3A!0.76!18.13!ARID3A;;chr3:52001426..52001447,-!p3@PCBP4!0.76!14.64!PCBP4;;chrX:56258844..56258882,+!p1@KLF8!0.76!6.77!KLF8;;chr9:110250697..110250738,-!p2@KLF4!0.76!5.68!KLF4;;chr8:55370487..55370503,+!p1@SOX17!0.76!4.81!SOX17;;chr1:209979411..209979433,-!p2@IRF6!0.76!4.81!IRF6;;chr2:60780607..60780624,-!p2@BCL11A!0.75!15.29!BCL11A;;chr11:113930291..113930339,+!p2@ZBTB16!0.75!7.86!ZBTB16;;chr6:10415263..10415274,-!p8@TFAP2A!0.75!4.59!TFAP2A;;chr20:42295713..42295738,+!p2@MYBL2!0.74!29.71!MYBL2;;chr2:46524537..46524553,+!p1@EPAS1!0.73!488.43!EPAS1;;chr13:73633131..73633149,+!p1@KLF5!0.73!52.21!KLF5;;chr19:17356189..17356221,-!p2@NR2F6!0.73!7.65!NR2F6;;chr14:75988771..75988826,+!p1@BATF!0.73!6.12!BATF;;chr8:102504932..102504952,+!p4@GRHL2!0.73!4.37!GRHL2;;chr3:52001448..52001478,-!p2@PCBP4!0.72!67.06!PCBP4;;chr18:6414884..6414942,-!p1@L3MBTL4!0.72!5.46!L3MBTL4;;chr3:24536253..24536328,-!p1@THRB!0.71!8.30!THRB;;chr17:41622925..41622976,-!p3@ETV4!0.71!6.55!ETV4;;chr12:54447637..54447659,+!p4@HOXC4!0.71!4.15!HOXC4;;chr12:66218255..66218304,+!p3@HMGA2!0.69!11.58!HMGA2;;chr1:151032860..151032918,+!p1@MLLT11!0.68!52.21!MLLT11;;chr12:124873357..124873401,-!p1@NCOR2!0.67!49.15!NCOR2;;chr3:71630980..71631110,-!p3@FOXP1!0.67!14.42!FOXP1;;chr20:18038486..18038520,-!p2@OVOL2!0.67!3.71!OVOL2;;chr4:149363494..149363543,-!p1@NR3C2!0.65!3.50!NR3C2;;chrX:56258900..56258917,+!p4@KLF8!0.65!3.50!KLF8;;chr11:125034640..125034655,+!p1@PKNOX2!0.65!3.50!PKNOX2;;chr19:22193731..22193751,-!p1@ZNF208!0.65!3.50!ZNF208;;chr2:60778035..60778060,-!p4@BCL11A!0.64!4.15!BCL11A;;chr15:96869255..96869291,+!p6@NR2F2!0.63!6.55!NR2F2;;chr3:52001396..52001425,-!p4@PCBP4!0.63!6.33!PCBP4;;chr1:151032922..151032951,+!p2@MLLT11!0.63!5.90!MLLT11;;chr1:6479968..6479986,-!p1@HES2!0.63!3.28!HES2;;chr17:45928521..45928539,-!p1@SP6!0.63!3.28!SP6;;chr17:46132044..46132080,+!p4@NFE2L1!0.63!3.28!NFE2L1;;chr10:8097295..8097320,+!p6@GATA3!0.63!3.28!GATA3;;chr6:31126291..31126399,+!p1@TCF19!0.62!35.82!TCF19;;chr2:60780753..60780800,-!p1@BCL11A!0.62!18.35!BCL11A;;chr15:96873861..96873872,+!p9@NR2F2!0.61!7.21!NR2F2;;chr6:85474299..85474324,-!p1@TBX18!0.61!6.12!TBX18;;chr19:22398550..22398579,-!p@chr19:22398550..22398579,-!0.61!3.06!ZNF676;;chr3:24536332..24536358,-!p2@THRB!0.61!3.06!THRB;;chrY:21906623..21906637,-!p3@KDM5D!0.61!3.06!KDM5D;;chr3:12329358..12329393,+!p3@PPARG!0.60!8.30!PPARG;;chr1:59249732..59249749,-!p2@JUN!0.59!42.60!JUN;;chr17:41622765..41622821,-!p2@ETV4!0.59!4.81!ETV4;;chr17:70117153..70117174,+!p1@SOX9!0.58!34.95!SOX9;;chr15:96869292..96869320,+!p15@NR2F2!0.58!4.37!NR2F2;;chr4:149363475..149363492,-!p2@NR3C2!0.58!2.84!NR3C2;;chr20:55205825..55205847,+!p2@TFAP2C!0.58!2.84!TFAP2C;;chrY:2803415..2803468,+!p1@ZFY!0.58!2.84!ZFY;;chr1:164528410..164528428,+!p1@PBX1!0.56!24.47!PBX1;;chr5:176738887..176738934,-!p1@MXD3!0.56!21.84!MXD3;;chr13:74708504..74708549,-!p1@KLF12!0.56!14.42!KLF12;;chr9:117150254..117150271,-!p1@AKNA!0.56!8.52!AKNA;;chr7:35293685..35293718,-!p1@TBX20!0.56!2.62!TBX20;;chr11:125034605..125034636,+!p2@PKNOX2!0.56!2.62!PKNOX2;;chr2:101436564..101436647,+!p1@NPAS2!0.55!65.10!NPAS2;;chr10:77161504..77161530,-!p1@ZNF503!0.55!43.03!ZNF503;;chr17:41623009..41623053,-!p4@ETV4!0.55!4.59!ETV4;;chr12:66218378..66218401,+!p6@HMGA2!0.55!4.37!HMGA2;;chr1:8483878..8483907,-!p4@RERE!0.54!11.80!RERE;;chr16:29817789..29817838,+!p2@MAZ!0.53!41.29!MAZ;;chr12:54447599..54447630,+!p3@HOXC4!0.53!3.06!HOXC4;;chr11:47236584..47236679,+!p1@DDB2!0.52!32.77!DDB2;;chr19:22235279..22235301,+!p1@ZNF257!0.52!5.02!ZNF257;;chr22:42229246..42229270,+!p2@SREBF2!0.50!35.82!SREBF2;;chr2:166326200..166326216,+!p1@CSRNP3!0.50!3.50!CSRNP3;;chr9:16870659..16870675,-!p2@BNC2!0.50!2.84!BNC2;;chr2:46524865..46524870,+!p9@EPAS1!0.50!2.62!EPAS1;;chr10:8097321..8097348,+!p4@GATA3!0.50!2.18!GATA3;;chr19:46806868..46806883,+!p3@HIF3A!0.50!2.18!HIF3A;;chr6:10419768..10419819,-!p6@TFAP2A!0.50!2.18!TFAP2A;;chr12:2986275..2986363,-!p1@FOXM1!0.49!27.52!FOXM1;;chr3:128206762..128206781,-!p2@GATA2!0.49!17.04!GATA2;;chr5:72744594..72744609,-!p1@FOXD1!0.49!12.23!FOXD1;;chr2:25475120..25475176,-!p2@DNMT3A!0.49!3.06!DNMT3A;;chr6:144329384..144329405,-!p1@PLAGL1!0.48!31.24!PLAGL1;;chr16:29818160..29818188,+!p6@MAZ!0.48!12.23!MAZ;;chr8:102217679..102217719,-!p2@ZNF706!0.48!8.96!ZNF706;;chr11:12696002..12696022,+!p2@TEAD1!0.48!6.12!TEAD1;;chr12:66218003..66218018,+!p9@HMGA2!0.48!2.62!HMGA2;;chr17:41622834..41622883,-!p6@ETV4!0.48!2.62!ETV4;;chr12:77459306..77459365,-!p1@E2F7!0.47!32.98!E2F7;;chr17:46621937..46621966,-!p2@HOXB2!0.47!6.55!HOXB2;;chr19:20188776..20188826,+!p1@ZNF90!0.47!6.55!ZNF90;;chr15:96874244..96874259,+!p5@NR2F2!0.47!5.90!NR2F2;;chr3:12329397..12329433,+!p2@PPARG!0.47!5.46!PPARG;;chr16:73092791..73092831,-!p4@ZFHX3!0.47!4.15!ZFHX3;;chr9:16870710..16870763,-!p1@BNC2!0.47!3.93!BNC2;;chr2:46612334..46612349,+!p6@EPAS1!0.47!2.84!EPAS1;;chr11:12696071..12696086,+!p3@TEAD1!0.47!2.84!TEAD1;;chr12:54422217..54422239,+!p3@HOXC6!0.47!1.97!HOXC6;;chr5:174151612..174151633,+!p2@MSX2!0.47!1.97!MSX2;;chr6:10412640..10412655,-!p14@TFAP2A!0.47!1.97!TFAP2A;;chr1:201979743..201979762,+!p1@ELF3!0.47!1.97!ELF3;;chr16:67881647..67881663,-!p3@CENPT!0.47!1.97!CENPT;;chr16:73093210..73093223,-!p13@ZFHX3!0.47!1.97!ZFHX3;;chr16:29817841..29817865,+!p1@MAZ!0.46!56.14!MAZ;;chr14:62162258..62162269,+!p2@HIF1A!0.46!24.90!HIF1A;;chrX:129244454..129244488,-!p1@ELF4!0.46!18.35!ELF4;;chr19:24097675..24097699,+!p1@ZNF726!0.46!8.08!ZNF726;;chr1:164528445..164528459,+!p2@PBX1!0.46!7.65!PBX1;;chr16:86600426..86600441,+!p1@FOXC2!0.46!5.90!FOXC2;;chr20:32274150..32274166,-!p2@E2F1!0.46!4.15!E2F1;;chr3:42947600..42947680,+!p1@ZNF662!0.46!3.06!ZNF662;;chr3:71631151..71631194,-!p15@FOXP1!0.46!2.18!FOXP1;;chr1:59249707..59249727,-!p1@JUN!0.45!108.57!JUN;;chr17:61920280..61920343,-!p2@SMARCD2!0.45!24.47!SMARCD2;;chr7:28448965..28448994,+!p2@CREB5!0.45!8.30!CREB5;;chr1:8484314..8484348,-!p7@RERE!0.45!6.33!RERE;;chr7:42276787..42276815,-!p1@GLI3!0.45!6.12!GLI3;;chr15:74833584..74833626,+!p1@ARID3B!0.45!5.24!ARID3B;;chr2:43453734..43453751,-!p1@ZFP36L2!0.44!269.56!ZFP36L2;;chr20:32274179..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| ||
|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000066;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000222;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002536;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000158;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000305;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0004871 | |||
|fonse_cell_line= | |fonse_cell_line= | ||
|fonse_cell_line_closure= | |fonse_cell_line_closure= | ||
| Line 35: | Line 43: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Amniotic%2520Epithelial%2520Cells%252c%2520donor1.CNhs11341.11533-120A3.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Amniotic%2520Epithelial%2520Cells%252c%2520donor1.CNhs11341.11533-120A3.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Amniotic%2520Epithelial%2520Cells%252c%2520donor1.CNhs11341.11533-120A3.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Amniotic%2520Epithelial%2520Cells%252c%2520donor1.CNhs11341.11533-120A3.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Amniotic%2520Epithelial%2520Cells%252c%2520donor1.CNhs11341.11533-120A3.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:11533-120A3 | |id=FF:11533-120A3 | ||
|is_a=EFO:0002091;;FF: | |is_a=EFO:0002091;;FF:0000009 | ||
|is_obsolete= | |||
|library_id=CNhs11341 | |||
|library_id_phase_based=2:CNhs11341 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11533 | |||
|microRNAs_nonnovel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#srna;sample;SRhi10002.TTAGGC.11533 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11533 | |||
|microRNAs_novel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer_novel/#/human#srna;sample;SRhi10002.TTAGGC.11533 | |||
|name=Amniotic Epithelial Cells, donor1 | |name=Amniotic Epithelial Cells, donor1 | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
| Line 42: | Line 64: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs11341,LSID769,release014,COMPLETED | |profile_hcage=CNhs11341,LSID769,release014,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=SRhi10002,,, | |profile_srnaseq=SRhi10002,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
|repeat_enrich_byfamily=0,0,0,0,0.042902318515433,0,0,0.160286591790396,0,0.111872582931559,-0.282403560576942,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.153323010348428,0,0,0,0,0,-0.0979578962680575,0,0,-0.132956589778862,0,0,0,0,0,0,0,0,0,0,0,0,-0.0302443114532445,0,0,0,0,0,0,0,0,0.0186872974025986,0,0,0,0.085804637030866,0,0,0.085804637030866,-0.0969923612426051,0,0,-0.011538990182231,0,0,0,0,0,0,0,0,0.157421329304417,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0408241686039905,-0.168295084180436,0,0.085804637030866,0.042902318515433,0.085804637030866,-0.0980353512377064,-0.138477200800895,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0176629292702524,0,0,0,0,0.0448483689442466,0,0,0,0,0,0 | |||
|repeat_enrich_byname=0,0,0,0,-0.0980353512377064,0,0.085804637030866,0,0.085804637030866,0,0,0,0,0.085804637030866,0,0,0.0255363604580387,0,-0.474086218752008,0.328651955396743,0,0,-0.164905469605737,0,0,0,0,0,0,0,0.085804637030866,0,-0.0423152299216988,0,-0.0504125515893149,0,0,0,0,0.0480873848899092,0.0974919856461199,0,-0.0379004432777082,0.295389573544872,0,0,0,0,0.044553544277992,0,0.151835751949862,0.00308446870744861,-0.0329058915946434,0.139122761864283,-0.04680465889238,0,0,0,-0.580774599879665,0.0417591142875429,0,0,-0.121779851751874,-0.102638953908451,0,0,-0.391044581551635,0,0.0354154205914893,0.256769556853054,0,-0.177619039986976,0,0,0,0,0,0,0,0,0,0,0,-0.0145911483060035,-0.326988596678969,0,0,0,0,0.0516274017854502,0.085804637030866,0,0.59523284879439,0.257595208335526,0.0197952689402442,-0.0854772132920394,0,-0.144968397705496,-0.0210601183294697,0.133217214273909,0.129441373579861,-0.147401849371139,0.248960878026954,0.00128833021541247,0.0417518303202222,0.202181749423422,0.00554195090380715,0.159003516992388,0.121563704160486,0.385714066842565,0.156207254807368,0,0.157421329304417,0,0.303176693631823,0,-0.010614659393605,0.202903483751243,0.0693439574855295,0.62614463629893,-0.160340324311926,0.110878081158367,0.0466621070172735,-0.0395325284566706,-0.184721217152992,0,-0.242312388516465,0,0.085804637030866,0,-0.0462806458981236,0.30606951559571,-0.212861956634152,0,-0.12024362718874,-0.0683442610773682,0,0.0477331531483585,0.141202110645159,0,0,0.00552434257675838,0,0,0.0401976260925339,0,0,0.0674852372723789,-0.4536875059993,-0.0754342322511277,0,0.0802746915153605,0.00335445852033522,0.135408051639995,0,0.0928428308110901,0,0,-0.0199185688526328,0,0.116455318633284,-0.0883306473157291,0.084160124199441,-0.336590168360872,-0.0584468268118252,-0.366738099153491,0.0869843644991706,0.0408241686039905,0.0633179486736479,0,-0.0881268324752877,-0.0545697858372298,-0.562940128641598,-0.315764296999284,0.0495755729909807,-0.036425487472755,0.085804637030866,0.0387807080218159,0,-0.0580044361859485,0,-0.0552237580452827,0.0438678219749302,-0.220406332252493,-0.430629241312421,0,0.0810836586689497,-0.788130937773974,0.320604621876782,0.000330862571622736,0.0118216954568748,0.085804637030866,-0.150367083334639,0.18043738479139,-0.211650427864589,0.013354383000335,0,0.301901464313376,0,0,-0.128806990324055,-0.149671400733523,0,0.046597515315684,0.0218978075249101,-0.13204894327508,0.041450255869483,0,0,0.0276434798966407,0,0.157421329304417,0.419845455727597,0,-0.116753837378554,-0.253326341486756,0,0.936541985589032,0,0,-0.0201064366607586,0,-0.0908467878281315,0,0,-0.0895789856604327,0,0,0,0,0.0408178584023432,0,0,0,0,0.0144060990569047,0,0,0.0346094706162541,-0.135950287888255,0,0,0,0.085804637030866,0.085804637030866,0,0,0,0,0,0.248854312381982,-0.0474023279036574,-0.12301741567642,0.2194712987884,0,0,0,0.104881219323307,-0.0458152327903067,0,-0.0460580694667658,0,0,0,0,-0.0861409897892114,0,0,0,0,0.0280741799772019,0.00786299121552449,0,0,0,-0.27695440160179,0,0,0,0,-0.235287647316676,0,0,0.115269393256943,0,0.0982392499554279,-0.0815818795468414,0,-0.228146617881375,-0.126607894496972,0.498914698442763,0,0,-0.103925802485471,0,0,-0.404843599894941,0,0,-0.0209247759461169,0,0,0,0,0,0,-0.214314512399756,0,0,0,0,0,0,0,0,0,0,0.085804637030866,0.100873969598358,0.126658985669682,0.085804637030866,0,0,0,0,0,0,0.0975069600887384,-0.0541168098018875,0.042902318515433,0,0,0,0,0.157421329304417,0,0,-0.252542897335049,0,0,0,0,0,-0.0969923612426051,0,0,0,0,-0.564807121153884,0,0,0.125602084351013,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0375144490045818,0.111872582931559,0,0,0,0,0,0,0,-0.189028661175225,0,0,0,0,-0.113884373708977,0.085804637030866,0,0,0.167918850954447,0,0.160286591790396,0,0,0,0,0,0.085804637030866,0.042902318515433,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.270868105082331,0,-0.101992887586051,-0.0568589461625992,0,0,0.179742833677752,0,0,0,0,0,0,-0.031340424028527,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0962259712900034,0,0,0,0,0,0,0,-0.0979578962680575,0,0,-0.0920328098005262,0,0,0,0,0,0,-0.0435924138690129,0.602903095796821,-0.0174837021881015,0,0,0,0.0672274106851865,0.085804637030866,0,0.0444733900271032,0.085804637030866,0.492086693345969,0,0,0,0,0,0,0,0,0.272715235743603,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.153323010348428,0,0,0,0,0,0,0,0,0,0,0,0,0.042902318515433,0,0,0,0,0,0,0,0,0,0,0,0,0.218883042328193,0,0,0,0,0,0,0,0,0,-0.0340113632754165,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0800184682686384,0,0,0,-0.127281592626178,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0335137306264067,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0482220752390542,0,0.00142800480083881,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.550504042515712,0,0,0,0,-0.0476371106609188,0,0,0,0,0,0,0,0.0489291200699484,0,0,0.218883042328193,0,0,0,0,0,0,0,0.042902318515433,0,0,-0.253610608288505,0,0,-0.157726167784564,0,0,0,0,0,0,0,0,0,0,0,0,0.0244844578807395,0,0,0,0,0,0,0,0,0,0,0.03737459480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| |||
|rna_box=120 | |rna_box=120 | ||
|rna_catalog_number=SC7105 | |rna_catalog_number=SC7105 | ||
| Line 56: | Line 81: | ||
|rna_tube_id=120A3 | |rna_tube_id=120A3 | ||
|rna_weight_ug=10 | |rna_weight_ug=10 | ||
|rnaseq_library_id=SRhi10002.TTAGGC | |||
|sample_age= | |sample_age= | ||
|sample_category=primary cells | |||
|sample_cell_catalog=lot:0669 | |sample_cell_catalog=lot:0669 | ||
|sample_cell_line= | |sample_cell_line= | ||
| Line 69: | Line 96: | ||
|sample_ethnicity= | |sample_ethnicity= | ||
|sample_experimental_condition= | |sample_experimental_condition= | ||
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;5.33158307607821e-234!GO:0005737;cytoplasm;1.29133949487283e-190!GO:0043226;organelle;7.30970593924998e-186!GO:0043229;intracellular organelle;1.82190118031121e-185!GO:0043231;intracellular membrane-bound organelle;5.17763076749759e-176!GO:0043227;membrane-bound organelle;1.63606172406292e-175!GO:0044422;organelle part;3.51608369744029e-148!GO:0044446;intracellular organelle part;7.16021698613775e-147!GO:0044444;cytoplasmic part;1.32692208137016e-133!GO:0032991;macromolecular complex;7.21070664490701e-92!GO:0044238;primary metabolic process;8.48688999854921e-84!GO:0044237;cellular metabolic process;1.16270975590866e-81!GO:0030529;ribonucleoprotein complex;3.09859473170084e-77!GO:0043170;macromolecule metabolic process;1.01632535610272e-75!GO:0005515;protein binding;1.610248133934e-75!GO:0005634;nucleus;3.82537233799182e-63!GO:0005739;mitochondrion;6.84203789345365e-63!GO:0043233;organelle lumen;6.93379818282703e-63!GO:0031974;membrane-enclosed lumen;6.93379818282703e-63!GO:0044428;nuclear part;3.79798435546563e-60!GO:0003723;RNA binding;1.73936698949506e-56!GO:0031090;organelle membrane;1.44617176068057e-54!GO:0019538;protein metabolic process;1.00392269701402e-51!GO:0005840;ribosome;1.28790987818931e-50!GO:0043234;protein complex;2.56646792123202e-47!GO:0006412;translation;4.8197299019628e-47!GO:0016043;cellular component organization and biogenesis;1.05220545091811e-46!GO:0044260;cellular macromolecule metabolic process;8.4843346101182e-45!GO:0003735;structural constituent of ribosome;1.14740716014513e-44!GO:0044267;cellular protein metabolic process;1.90981268058467e-44!GO:0044429;mitochondrial part;1.30775479640251e-43!GO:0009058;biosynthetic process;7.12033878692656e-43!GO:0043283;biopolymer metabolic process;2.15094568080609e-42!GO:0033036;macromolecule localization;3.51970027617884e-42!GO:0015031;protein transport;8.68125157291838e-42!GO:0043228;non-membrane-bound organelle;6.93900936045977e-40!GO:0043232;intracellular non-membrane-bound organelle;6.93900936045977e-40!GO:0031967;organelle envelope;1.75586177521947e-39!GO:0008104;protein localization;2.1125967432012e-39!GO:0031975;envelope;4.23021596458273e-39!GO:0045184;establishment of protein localization;7.13156304784584e-39!GO:0033279;ribosomal subunit;2.72004853932114e-38!GO:0009059;macromolecule biosynthetic process;3.04383684392267e-38!GO:0006396;RNA processing;3.55279495293834e-38!GO:0044249;cellular biosynthetic process;1.58463767601648e-37!GO:0031981;nuclear lumen;7.48707351378194e-36!GO:0005829;cytosol;1.00698376160109e-35!GO:0065003;macromolecular complex assembly;2.21548177038361e-33!GO:0046907;intracellular transport;2.70803237296899e-33!GO:0006996;organelle organization and biogenesis;8.10572018002665e-33!GO:0010467;gene expression;3.31525566411895e-31!GO:0016071;mRNA metabolic process;5.92698147041104e-31!GO:0022607;cellular component assembly;9.24371795528864e-31!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;3.6899105890378e-30!GO:0005740;mitochondrial envelope;6.09722804626581e-29!GO:0005830;cytosolic ribosome (sensu Eukaryota);6.96207526991615e-29!GO:0006886;intracellular protein transport;2.28312734433426e-28!GO:0008380;RNA splicing;1.37624632268526e-27!GO:0031966;mitochondrial membrane;2.05774946869575e-27!GO:0006397;mRNA processing;7.05297584496034e-27!GO:0019866;organelle inner membrane;1.12057964624923e-26!GO:0006259;DNA metabolic process;1.40282072339734e-26!GO:0007049;cell cycle;8.34497908753751e-25!GO:0005743;mitochondrial inner membrane;8.71120828854866e-25!GO:0044445;cytosolic part;7.92620461280274e-24!GO:0012505;endomembrane system;2.55378452042483e-23!GO:0022613;ribonucleoprotein complex biogenesis and assembly;5.8722318931647e-23!GO:0005654;nucleoplasm;1.75745026552513e-21!GO:0051649;establishment of cellular localization;2.57343473790402e-21!GO:0051641;cellular localization;4.17123896695413e-21!GO:0005681;spliceosome;1.79750105670822e-20!GO:0015934;large ribosomal subunit;6.64610949321915e-20!GO:0022402;cell cycle process;9.52363151478213e-20!GO:0016874;ligase activity;1.13799125537342e-19!GO:0005783;endoplasmic reticulum;1.37942707609023e-19!GO:0015935;small ribosomal subunit;2.28543205001e-19!GO:0006119;oxidative phosphorylation;2.47554342922403e-19!GO:0044455;mitochondrial membrane part;9.22950149053461e-19!GO:0000278;mitotic cell cycle;1.65124387292171e-18!GO:0044432;endoplasmic reticulum part;1.65124387292171e-18!GO:0000166;nucleotide binding;1.7946050379076e-18!GO:0044451;nucleoplasm part;5.71856485683267e-18!GO:0043412;biopolymer modification;1.08411680876186e-17!GO:0031980;mitochondrial lumen;1.70266081067581e-17!GO:0005759;mitochondrial matrix;1.70266081067581e-17!GO:0006457;protein folding;1.74892786837799e-17!GO:0005794;Golgi apparatus;3.40711792410212e-17!GO:0048770;pigment granule;8.90984262867016e-17!GO:0042470;melanosome;8.90984262867016e-17!GO:0016462;pyrophosphatase activity;2.02050981779277e-16!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;2.28890906775213e-16!GO:0016817;hydrolase activity, acting on acid anhydrides;2.93148589788691e-16!GO:0006464;protein modification process;5.18515143080949e-16!GO:0006512;ubiquitin cycle;9.23227682859984e-16!GO:0005746;mitochondrial respiratory chain;1.19422732310192e-15!GO:0017111;nucleoside-triphosphatase activity;2.02005368120246e-15!GO:0003676;nucleic acid binding;2.31355909248993e-15!GO:0008134;transcription factor binding;4.57905112217688e-15!GO:0022403;cell cycle phase;4.88051327460078e-15!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);7.22967873745619e-15!GO:0022618;protein-RNA complex assembly;1.88996756145012e-14!GO:0044265;cellular macromolecule catabolic process;2.4653932221487e-14!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;2.48016817305486e-14!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);2.82294383223473e-14!GO:0005730;nucleolus;3.39615006725997e-14!GO:0050136;NADH dehydrogenase (quinone) activity;7.55075993599538e-14!GO:0003954;NADH dehydrogenase activity;7.55075993599538e-14!GO:0008137;NADH dehydrogenase (ubiquinone) activity;7.55075993599538e-14!GO:0032553;ribonucleotide binding;7.71603005883172e-14!GO:0032555;purine ribonucleotide binding;7.71603005883172e-14!GO:0005694;chromosome;1.19762912075262e-13!GO:0043285;biopolymer catabolic process;1.21718885836571e-13!GO:0006605;protein targeting;1.27861973036735e-13!GO:0051186;cofactor metabolic process;1.57056849429645e-13!GO:0051276;chromosome organization and biogenesis;1.63397851606381e-13!GO:0006974;response to DNA damage stimulus;1.93416570151034e-13!GO:0000087;M phase of mitotic cell cycle;2.15499754368509e-13!GO:0007067;mitosis;2.33683948139152e-13!GO:0042175;nuclear envelope-endoplasmic reticulum network;2.73206738669521e-13!GO:0005761;mitochondrial ribosome;3.3700073624558e-13!GO:0000313;organellar ribosome;3.3700073624558e-13!GO:0005789;endoplasmic reticulum membrane;3.57291017931066e-13!GO:0043687;post-translational protein modification;3.86319870217289e-13!GO:0044427;chromosomal part;3.89797712749007e-13!GO:0051603;proteolysis involved in cellular protein catabolic process;5.60392092552442e-13!GO:0009057;macromolecule catabolic process;6.00160916379339e-13!GO:0005524;ATP binding;6.44111243324476e-13!GO:0019941;modification-dependent protein catabolic process;1.02847914238414e-12!GO:0043632;modification-dependent macromolecule catabolic process;1.02847914238414e-12!GO:0006511;ubiquitin-dependent protein catabolic process;1.06129276884764e-12!GO:0017076;purine nucleotide binding;1.0726440789642e-12!GO:0044257;cellular protein catabolic process;1.10075097602515e-12!GO:0032559;adenyl ribonucleotide binding;1.40123601380733e-12!GO:0000502;proteasome complex (sensu Eukaryota);1.66549607313782e-12!GO:0044248;cellular catabolic process;1.66549607313782e-12!GO:0042775;organelle ATP synthesis coupled electron transport;2.84755538400736e-12!GO:0042773;ATP synthesis coupled electron transport;2.84755538400736e-12!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;3.34670228350509e-12!GO:0006325;establishment and/or maintenance of chromatin architecture;4.23971968973253e-12!GO:0048193;Golgi vesicle transport;4.35555840265347e-12!GO:0051082;unfolded protein binding;5.23780180004024e-12!GO:0030964;NADH dehydrogenase complex (quinone);5.85709307700108e-12!GO:0045271;respiratory chain complex I;5.85709307700108e-12!GO:0005747;mitochondrial respiratory chain complex I;5.85709307700108e-12!GO:0051301;cell division;7.44562209462199e-12!GO:0030163;protein catabolic process;8.76856458607942e-12!GO:0006281;DNA repair;1.14103076642858e-11!GO:0016070;RNA metabolic process;1.32571555361899e-11!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;1.61722617240167e-11!GO:0006323;DNA packaging;2.13858655881995e-11!GO:0000398;nuclear mRNA splicing, via spliceosome;2.14204224943672e-11!GO:0000375;RNA splicing, via transesterification reactions;2.14204224943672e-11!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;2.14204224943672e-11!GO:0008135;translation factor activity, nucleic acid binding;2.41947435608527e-11!GO:0005635;nuclear envelope;2.71020265271569e-11!GO:0000279;M phase;2.8319555846007e-11!GO:0030554;adenyl nucleotide binding;3.32948761785645e-11!GO:0051726;regulation of cell cycle;5.21486970276465e-11!GO:0000074;regulation of progression through cell cycle;5.30606793402652e-11!GO:0006461;protein complex assembly;6.59575220445685e-11!GO:0016192;vesicle-mediated transport;8.03764019855113e-11!GO:0006732;coenzyme metabolic process;8.91900427819264e-11!GO:0031965;nuclear membrane;1.69826362992457e-10!GO:0008639;small protein conjugating enzyme activity;1.84521448919035e-10!GO:0065004;protein-DNA complex assembly;4.02450973909277e-10!GO:0004842;ubiquitin-protein ligase activity;4.30956026948292e-10!GO:0009719;response to endogenous stimulus;4.81200809111385e-10!GO:0044453;nuclear membrane part;5.44842763014035e-10!GO:0019787;small conjugating protein ligase activity;9.12229461561928e-10!GO:0016879;ligase activity, forming carbon-nitrogen bonds;1.00535491704096e-09!GO:0005793;ER-Golgi intermediate compartment;1.11726561612006e-09!GO:0006333;chromatin assembly or disassembly;1.24926977737875e-09!GO:0006260;DNA replication;1.93227450864508e-09!GO:0000785;chromatin;2.55562081927892e-09!GO:0016604;nuclear body;3.44012758881157e-09!GO:0006399;tRNA metabolic process;3.66285892371872e-09!GO:0016740;transferase activity;3.74254032011016e-09!GO:0009055;electron carrier activity;3.9800823719248e-09!GO:0003712;transcription cofactor activity;4.33939169745208e-09!GO:0006913;nucleocytoplasmic transport;4.35893450425143e-09!GO:0003743;translation initiation factor activity;4.49636259017558e-09!GO:0006915;apoptosis;4.63590596023345e-09!GO:0008565;protein transporter activity;4.66004175944452e-09!GO:0009259;ribonucleotide metabolic process;4.8790801019768e-09!GO:0012501;programmed cell death;4.92376011682405e-09!GO:0006413;translational initiation;5.36819640149069e-09!GO:0042254;ribosome biogenesis and assembly;5.65280153199844e-09!GO:0005768;endosome;5.94000348566194e-09!GO:0051169;nuclear transport;8.33388829534627e-09!GO:0006334;nucleosome assembly;1.099513477231e-08!GO:0006446;regulation of translational initiation;1.14259430479249e-08!GO:0042623;ATPase activity, coupled;1.19946638187854e-08!GO:0065002;intracellular protein transport across a membrane;1.62945959331151e-08!GO:0016881;acid-amino acid ligase activity;2.10041341591834e-08!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;2.41267704013104e-08!GO:0004812;aminoacyl-tRNA ligase activity;2.41267704013104e-08!GO:0016875;ligase activity, forming carbon-oxygen bonds;2.41267704013104e-08!GO:0044431;Golgi apparatus part;2.8335212943864e-08!GO:0048475;coated membrane;2.97309498628629e-08!GO:0030117;membrane coat;2.97309498628629e-08!GO:0006163;purine nucleotide metabolic process;3.10730592828349e-08!GO:0031497;chromatin assembly;3.40926238110102e-08!GO:0009150;purine ribonucleotide metabolic process;3.92045258513192e-08!GO:0005643;nuclear pore;3.96157407010897e-08!GO:0016887;ATPase activity;4.40461616703293e-08!GO:0009260;ribonucleotide biosynthetic process;5.09144268430306e-08!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;6.40087485434605e-08!GO:0008219;cell death;6.5215924446095e-08!GO:0016265;death;6.5215924446095e-08!GO:0030120;vesicle coat;6.58848193829052e-08!GO:0030662;coated vesicle membrane;6.58848193829052e-08!GO:0043038;amino acid activation;6.76207470152922e-08!GO:0006418;tRNA aminoacylation for protein translation;6.76207470152922e-08!GO:0043039;tRNA aminoacylation;6.76207470152922e-08!GO:0030532;small nuclear ribonucleoprotein complex;7.34040092276252e-08!GO:0006793;phosphorus metabolic process;8.41593762699632e-08!GO:0006796;phosphate metabolic process;8.41593762699632e-08!GO:0009060;aerobic respiration;9.42626835349362e-08!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;1.09571774636523e-07!GO:0015630;microtubule cytoskeleton;1.13886912275321e-07!GO:0006164;purine nucleotide biosynthetic process;1.16008407815643e-07!GO:0017038;protein import;1.34025292458135e-07!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;1.40748229925047e-07!GO:0009152;purine ribonucleotide biosynthetic process;1.40958178783156e-07!GO:0009056;catabolic process;1.48989203142644e-07!GO:0005788;endoplasmic reticulum lumen;1.48989203142644e-07!GO:0031252;leading edge;1.86014855831183e-07!GO:0004386;helicase activity;1.86870033635638e-07!GO:0016607;nuclear speck;2.39414616814221e-07!GO:0051188;cofactor biosynthetic process;2.81775365616656e-07!GO:0007005;mitochondrion organization and biogenesis;3.2168369488225e-07!GO:0009199;ribonucleoside triphosphate metabolic process;3.26616043593617e-07!GO:0006366;transcription from RNA polymerase II promoter;3.32367998762899e-07!GO:0045333;cellular respiration;3.57611711048476e-07!GO:0006888;ER to Golgi vesicle-mediated transport;3.84374553722263e-07!GO:0009141;nucleoside triphosphate metabolic process;3.95552469060765e-07!GO:0009142;nucleoside triphosphate biosynthetic process;4.43734585555609e-07!GO:0009201;ribonucleoside triphosphate biosynthetic process;4.43734585555609e-07!GO:0009205;purine ribonucleoside triphosphate metabolic process;7.43522122798494e-07!GO:0009144;purine nucleoside triphosphate metabolic process;7.43522122798494e-07!GO:0046930;pore complex;8.44142344396368e-07!GO:0051325;interphase;8.44847680653015e-07!GO:0032446;protein modification by small protein conjugation;8.84575536609951e-07!GO:0016772;transferase activity, transferring phosphorus-containing groups;9.46208885166231e-07!GO:0015986;ATP synthesis coupled proton transport;9.46208885166231e-07!GO:0015985;energy coupled proton transport, down electrochemical gradient;9.46208885166231e-07!GO:0051329;interphase of mitotic cell cycle;9.46208885166231e-07!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;1.04365118559101e-06!GO:0009145;purine nucleoside triphosphate biosynthetic process;1.04365118559101e-06!GO:0016567;protein ubiquitination;1.39687787477386e-06!GO:0050657;nucleic acid transport;1.44452820027583e-06!GO:0051236;establishment of RNA localization;1.44452820027583e-06!GO:0050658;RNA transport;1.44452820027583e-06!GO:0051246;regulation of protein metabolic process;1.50390820205143e-06!GO:0009117;nucleotide metabolic process;1.68615109409609e-06!GO:0006403;RNA localization;1.81643306726264e-06!GO:0008654;phospholipid biosynthetic process;1.84700299032935e-06!GO:0043623;cellular protein complex assembly;2.14368015912824e-06!GO:0008026;ATP-dependent helicase activity;2.22120203466575e-06!GO:0005798;Golgi-associated vesicle;2.51424586559635e-06!GO:0006099;tricarboxylic acid cycle;2.5302044485193e-06!GO:0046356;acetyl-CoA catabolic process;2.5302044485193e-06!GO:0000139;Golgi membrane;2.62188297211069e-06!GO:0005773;vacuole;2.80575590841881e-06!GO:0015078;hydrogen ion transmembrane transporter activity;3.24843444243107e-06!GO:0019829;cation-transporting ATPase activity;3.39545991932806e-06!GO:0016310;phosphorylation;3.59540959570508e-06!GO:0006364;rRNA processing;3.79130113131647e-06!GO:0016023;cytoplasmic membrane-bound vesicle;3.916958766898e-06!GO:0006084;acetyl-CoA metabolic process;4.10198417615315e-06!GO:0016568;chromatin modification;4.32599620346493e-06!GO:0044440;endosomal part;4.35360173042274e-06!GO:0010008;endosome membrane;4.35360173042274e-06!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;5.22559598016549e-06!GO:0045259;proton-transporting ATP synthase complex;5.37454397276903e-06!GO:0048523;negative regulation of cellular process;5.60979617089655e-06!GO:0050794;regulation of cellular process;5.7618748992505e-06!GO:0031988;membrane-bound vesicle;5.9078691552165e-06!GO:0046034;ATP metabolic process;6.31058112431678e-06!GO:0016469;proton-transporting two-sector ATPase complex;6.32293129518102e-06!GO:0003924;GTPase activity;6.32293129518102e-06!GO:0031982;vesicle;6.43558831443507e-06!GO:0031410;cytoplasmic vesicle;7.62621564908802e-06!GO:0016072;rRNA metabolic process;7.68562575138342e-06!GO:0006754;ATP biosynthetic process;7.86369539066155e-06!GO:0006753;nucleoside phosphate metabolic process;7.86369539066155e-06!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;8.37202511622734e-06!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;8.9486780723415e-06!GO:0042981;regulation of apoptosis;9.1661979642572e-06!GO:0003697;single-stranded DNA binding;1.23597122986369e-05!GO:0005770;late endosome;1.40026627195269e-05!GO:0009109;coenzyme catabolic process;1.44982271687184e-05!GO:0043067;regulation of programmed cell death;1.46185500467926e-05!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;1.80493963232354e-05!GO:0016779;nucleotidyltransferase activity;2.00328840941366e-05!GO:0009108;coenzyme biosynthetic process;2.3508876182194e-05!GO:0005762;mitochondrial large ribosomal subunit;2.50363024555781e-05!GO:0000315;organellar large ribosomal subunit;2.50363024555781e-05!GO:0005839;proteasome core complex (sensu Eukaryota);2.53811723998545e-05!GO:0005813;centrosome;2.93744871330912e-05!GO:0016853;isomerase activity;3.49882617928673e-05!GO:0006752;group transfer coenzyme metabolic process;3.65618036572081e-05!GO:0051028;mRNA transport;3.7510047257301e-05!GO:0031324;negative regulation of cellular metabolic process;3.86445051021424e-05!GO:0000323;lytic vacuole;3.88607299797258e-05!GO:0005764;lysosome;3.88607299797258e-05!GO:0016787;hydrolase activity;4.06065620583684e-05!GO:0019899;enzyme binding;4.36014351500687e-05!GO:0003714;transcription corepressor activity;4.39153911560086e-05!GO:0005819;spindle;4.44496469173043e-05!GO:0007249;I-kappaB kinase/NF-kappaB cascade;4.68141860846633e-05!GO:0051170;nuclear import;4.7018360882075e-05!GO:0005667;transcription factor complex;4.73396061387459e-05!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;5.03634348834488e-05!GO:0000786;nucleosome;5.03634348834488e-05!GO:0016859;cis-trans isomerase activity;5.18685812948206e-05!GO:0000245;spliceosome assembly;6.33576230997213e-05!GO:0000151;ubiquitin ligase complex;6.33576230997213e-05!GO:0051187;cofactor catabolic process;6.33576230997213e-05!GO:0007010;cytoskeleton organization and biogenesis;7.28395156480232e-05!GO:0003713;transcription coactivator activity;7.28395156480232e-05!GO:0045786;negative regulation of progression through cell cycle;8.32655000166653e-05!GO:0006606;protein import into nucleus;8.35633020610989e-05!GO:0016563;transcription activator activity;8.36991332461053e-05!GO:0006916;anti-apoptosis;8.40333908534112e-05!GO:0030036;actin cytoskeleton organization and biogenesis;9.19526714155543e-05!GO:0019843;rRNA binding;0.000102043885758407!GO:0004298;threonine endopeptidase activity;0.000107390386494317!GO:0016126;sterol biosynthetic process;0.000109599929483035!GO:0005815;microtubule organizing center;0.000114297003233911!GO:0043566;structure-specific DNA binding;0.0001317699035623!GO:0016491;oxidoreductase activity;0.000137867829283706!GO:0048519;negative regulation of biological process;0.000142921614333882!GO:0031202;RNA splicing factor activity, transesterification mechanism;0.000144484729583033!GO:0005905;coated pit;0.000149393947074056!GO:0042802;identical protein binding;0.000151858964198107!GO:0003899;DNA-directed RNA polymerase activity;0.000152988622421912!GO:0000307;cyclin-dependent protein kinase holoenzyme complex;0.000156842937463148!GO:0033116;ER-Golgi intermediate compartment membrane;0.000160541024408043!GO:0015077;monovalent inorganic cation transmembrane transporter activity;0.000170164835628138!GO:0030118;clathrin coat;0.000174620809257629!GO:0030867;rough endoplasmic reticulum membrane;0.000188626321245296!GO:0045454;cell redox homeostasis;0.000191781751759898!GO:0043069;negative regulation of programmed cell death;0.000196797000792387!GO:0009892;negative regulation of metabolic process;0.000203896028617241!GO:0030133;transport vesicle;0.000213641203306401!GO:0007243;protein kinase cascade;0.000216762291691667!GO:0001558;regulation of cell growth;0.000218787677380461!GO:0043066;negative regulation of apoptosis;0.000222855676241421!GO:0046474;glycerophospholipid biosynthetic process;0.000225718524905253!GO:0051789;response to protein stimulus;0.00022907947484276!GO:0006986;response to unfolded protein;0.00022907947484276!GO:0015980;energy derivation by oxidation of organic compounds;0.000232473628948028!GO:0008361;regulation of cell size;0.000232473628948028!GO:0001726;ruffle;0.000236549336925369!GO:0065009;regulation of a molecular function;0.000247844078474237!GO:0051427;hormone receptor binding;0.000259783937090171!GO:0006613;cotranslational protein targeting to membrane;0.000265036653032826!GO:0007264;small GTPase mediated signal transduction;0.000270108808187639!GO:0000079;regulation of cyclin-dependent protein kinase activity;0.000270108808187639!GO:0008092;cytoskeletal protein binding;0.000273551220090257!GO:0008250;oligosaccharyl transferase complex;0.000276108325780316!GO:0016049;cell growth;0.00027842469636287!GO:0030027;lamellipodium;0.000298092704394012!GO:0051252;regulation of RNA metabolic process;0.000328086240421629!GO:0005769;early endosome;0.000328086240421629!GO:0030119;AP-type membrane coat adaptor complex;0.000344901097607802!GO:0000314;organellar small ribosomal subunit;0.000432532523397142!GO:0005763;mitochondrial small ribosomal subunit;0.000432532523397142!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.000435972746205933!GO:0046489;phosphoinositide biosynthetic process;0.000439136414442946!GO:0019867;outer membrane;0.000485308191207973!GO:0006091;generation of precursor metabolites and energy;0.000508870626724098!GO:0035257;nuclear hormone receptor binding;0.000508870626724098!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.000518875281223295!GO:0016564;transcription repressor activity;0.000523853599698227!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.000539995325778572!GO:0006839;mitochondrial transport;0.00056036059903388!GO:0006357;regulation of transcription from RNA polymerase II promoter;0.000560430682861493!GO:0030131;clathrin adaptor complex;0.000591891812594661!GO:0031968;organelle outer membrane;0.00059379203188866!GO:0008610;lipid biosynthetic process;0.000594403297376432!GO:0003724;RNA helicase activity;0.000622325433907776!GO:0030029;actin filament-based process;0.000632699675445824!GO:0005048;signal sequence binding;0.000656635237030392!GO:0048471;perinuclear region of cytoplasm;0.00067417658704056!GO:0043681;protein import into mitochondrion;0.00068357427447146!GO:0008094;DNA-dependent ATPase activity;0.000731194835328787!GO:0051168;nuclear export;0.000785933562278722!GO:0030132;clathrin coat of coated pit;0.000858362765533945!GO:0004576;oligosaccharyl transferase activity;0.000875541773103551!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.000942338007742491!GO:0005525;GTP binding;0.000942338007742491!GO:0016044;membrane organization and biogenesis;0.00094586710223103!GO:0016363;nuclear matrix;0.000953634248645581!GO:0030176;integral to endoplasmic reticulum membrane;0.000974606572582532!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.000974606572582532!GO:0006650;glycerophospholipid metabolic process;0.000987887432289162!GO:0005741;mitochondrial outer membrane;0.000999539373766159!GO:0018196;peptidyl-asparagine modification;0.00100830352846382!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.00100830352846382!GO:0007051;spindle organization and biogenesis;0.00104055409259248!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.00104602666241973!GO:0005791;rough endoplasmic reticulum;0.00105462920879002!GO:0006261;DNA-dependent DNA replication;0.00109237359027387!GO:0005885;Arp2/3 protein complex;0.00110456883398056!GO:0051920;peroxiredoxin activity;0.0011143658113784!GO:0006695;cholesterol biosynthetic process;0.00114509510715987!GO:0006626;protein targeting to mitochondrion;0.00118079281474818!GO:0030658;transport vesicle membrane;0.00119140965058188!GO:0043488;regulation of mRNA stability;0.00121807943136626!GO:0043487;regulation of RNA stability;0.00121807943136626!GO:0030384;phosphoinositide metabolic process;0.00128347480522483!GO:0003684;damaged DNA binding;0.0012917057745499!GO:0000775;chromosome, pericentric region;0.00129315854348692!GO:0005657;replication fork;0.00130262244880443!GO:0007006;mitochondrial membrane organization and biogenesis;0.00137377219016468!GO:0046467;membrane lipid biosynthetic process;0.0013884363172161!GO:0000075;cell cycle checkpoint;0.00146531033030628!GO:0005874;microtubule;0.00158642776110649!GO:0050789;regulation of biological process;0.00162610202416332!GO:0007088;regulation of mitosis;0.00163850511205887!GO:0043021;ribonucleoprotein binding;0.00175563421154035!GO:0009165;nucleotide biosynthetic process;0.00184620776272778!GO:0040008;regulation of growth;0.00202244046902004!GO:0007265;Ras protein signal transduction;0.00207964661113528!GO:0006414;translational elongation;0.0021042050387177!GO:0044262;cellular carbohydrate metabolic process;0.00210914720987538!GO:0030659;cytoplasmic vesicle membrane;0.00216062078235692!GO:0005684;U2-dependent spliceosome;0.0023523152686221!GO:0008186;RNA-dependent ATPase activity;0.00255966369138465!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00258137630252124!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00258137630252124!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00258137630252124!GO:0006082;organic acid metabolic process;0.00258991625466768!GO:0019752;carboxylic acid metabolic process;0.0026272947040526!GO:0005852;eukaryotic translation initiation factor 3 complex;0.00284434232645513!GO:0030880;RNA polymerase complex;0.00286124181602232!GO:0030660;Golgi-associated vesicle membrane;0.00287464910885044!GO:0000082;G1/S transition of mitotic cell cycle;0.00297254905312047!GO:0048522;positive regulation of cellular process;0.00312613077101508!GO:0031902;late endosome membrane;0.00317914547134908!GO:0005856;cytoskeleton;0.0032511367617706!GO:0050790;regulation of catalytic activity;0.00325519137964685!GO:0003729;mRNA binding;0.00343894718467873!GO:0006402;mRNA catabolic process;0.00359901099054536!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;0.00360035655090937!GO:0030663;COPI coated vesicle membrane;0.00363659861153461!GO:0030126;COPI vesicle coat;0.00363659861153461!GO:0017166;vinculin binding;0.00404802557608722!GO:0004674;protein serine/threonine kinase activity;0.0041742968312922!GO:0048487;beta-tubulin binding;0.00426607090925989!GO:0031072;heat shock protein binding;0.00436375115909789!GO:0016301;kinase activity;0.00439535849653897!GO:0006891;intra-Golgi vesicle-mediated transport;0.00450523948642579!GO:0032508;DNA duplex unwinding;0.00456552659906025!GO:0032392;DNA geometric change;0.00456552659906025!GO:0016780;phosphotransferase activity, for other substituted phosphate groups;0.00461557103113717!GO:0030134;ER to Golgi transport vesicle;0.00468513330530504!GO:0016481;negative regulation of transcription;0.00468680727853974!GO:0032561;guanyl ribonucleotide binding;0.00470106331056407!GO:0019001;guanyl nucleotide binding;0.00470106331056407!GO:0000059;protein import into nucleus, docking;0.00473648791806437!GO:0006612;protein targeting to membrane;0.00491826537136331!GO:0008033;tRNA processing;0.00528419927519568!GO:0030145;manganese ion binding;0.00528798248974906!GO:0003682;chromatin binding;0.0056768139257987!GO:0030125;clathrin vesicle coat;0.00568898052757898!GO:0030665;clathrin coated vesicle membrane;0.00568898052757898!GO:0003711;transcription elongation regulator activity;0.00584545143507045!GO:0030137;COPI-coated vesicle;0.00587280402123014!GO:0006506;GPI anchor biosynthetic process;0.00604136792988875!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.00627603312660768!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.00627603312660768!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.00644099122532597!GO:0000428;DNA-directed RNA polymerase complex;0.00644099122532597!GO:0004004;ATP-dependent RNA helicase activity;0.00656740993693567!GO:0006289;nucleotide-excision repair;0.00663532470999243!GO:0003678;DNA helicase activity;0.00667780648506404!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.00699658476428668!GO:0035258;steroid hormone receptor binding;0.00726434346183367!GO:0030127;COPII vesicle coat;0.0072774742343811!GO:0012507;ER to Golgi transport vesicle membrane;0.0072774742343811!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.00736148153262659!GO:0005774;vacuolar membrane;0.0076625911858481!GO:0009967;positive regulation of signal transduction;0.00775066212117487!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.00775066212117487!GO:0015002;heme-copper terminal oxidase activity;0.00775066212117487!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.00775066212117487!GO:0004129;cytochrome-c oxidase activity;0.00775066212117487!GO:0006520;amino acid metabolic process;0.00777433741586935!GO:0016311;dephosphorylation;0.00799738065267844!GO:0044433;cytoplasmic vesicle part;0.0080952806885907!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.00845743197710971!GO:0005637;nuclear inner membrane;0.00847840073955258!GO:0006509;membrane protein ectodomain proteolysis;0.00847894824820033!GO:0033619;membrane protein proteolysis;0.00847894824820033!GO:0043284;biopolymer biosynthetic process;0.00848749386445931!GO:0006595;polyamine metabolic process;0.00887133068007256!GO:0009112;nucleobase metabolic process;0.00901646056664403!GO:0006268;DNA unwinding during replication;0.00906722430943025!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.00906722430943025!GO:0008022;protein C-terminus binding;0.00911065539452122!GO:0030521;androgen receptor signaling pathway;0.00954962257896226!GO:0006505;GPI anchor metabolic process;0.00955877871115448!GO:0016272;prefoldin complex;0.00992347572479835!GO:0006818;hydrogen transport;0.01007268448433!GO:0019222;regulation of metabolic process;0.0103795649742251!GO:0016281;eukaryotic translation initiation factor 4F complex;0.0104640799667401!GO:0016197;endosome transport;0.0105357054342784!GO:0016125;sterol metabolic process;0.010591196490453!GO:0006497;protein amino acid lipidation;0.0106431745020485!GO:0004177;aminopeptidase activity;0.0107280380940662!GO:0008139;nuclear localization sequence binding;0.0112688589079112!GO:0016741;transferase activity, transferring one-carbon groups;0.0112770695865279!GO:0005869;dynactin complex;0.0115849291410194!GO:0045936;negative regulation of phosphate metabolic process;0.0115909712211601!GO:0007040;lysosome organization and biogenesis;0.0124837472280618!GO:0008168;methyltransferase activity;0.0128420334875993!GO:0044452;nucleolar part;0.0130901218172475!GO:0030031;cell projection biogenesis;0.0131099615776479!GO:0015992;proton transport;0.0132088752691582!GO:0006383;transcription from RNA polymerase III promoter;0.0133503664278687!GO:0006401;RNA catabolic process;0.0136372247145493!GO:0019205;nucleobase, nucleoside, nucleotide kinase activity;0.0137980424982463!GO:0015631;tubulin binding;0.0138782017127854!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.0139845176865628!GO:0015399;primary active transmembrane transporter activity;0.0139845176865628!GO:0031529;ruffle organization and biogenesis;0.0141301606958166!GO:0046483;heterocycle metabolic process;0.0142785781412165!GO:0007266;Rho protein signal transduction;0.0147933568380448!GO:0006611;protein export from nucleus;0.0149666746505291!GO:0006352;transcription initiation;0.0151556029791077!GO:0051338;regulation of transferase activity;0.01522692730388!GO:0006740;NADPH regeneration;0.0156845930260405!GO:0006098;pentose-phosphate shunt;0.0156845930260405!GO:0005083;small GTPase regulator activity;0.0159510668287861!GO:0016791;phosphoric monoester hydrolase activity;0.0159678264191194!GO:0006643;membrane lipid metabolic process;0.0160618087669013!GO:0000209;protein polyubiquitination;0.0162751078857448!GO:0006779;porphyrin biosynthetic process;0.0167037319191429!GO:0033014;tetrapyrrole biosynthetic process;0.0167037319191429!GO:0006644;phospholipid metabolic process;0.0167621039085351!GO:0043161;proteasomal ubiquitin-dependent protein catabolic process;0.0168532966098339!GO:0009116;nucleoside metabolic process;0.0171359120737625!GO:0051087;chaperone binding;0.0174509495473025!GO:0006066;alcohol metabolic process;0.0174613126238803!GO:0044437;vacuolar part;0.0179365163518597!GO:0048500;signal recognition particle;0.0182412011997417!GO:0051128;regulation of cellular component organization and biogenesis;0.0182739816326424!GO:0022890;inorganic cation transmembrane transporter activity;0.0187258168809918!GO:0000049;tRNA binding;0.0188901815396709!GO:0042158;lipoprotein biosynthetic process;0.0191074286111187!GO:0045935;positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.0195693310185474!GO:0004721;phosphoprotein phosphatase activity;0.0211949582912575!GO:0031543;peptidyl-proline dioxygenase activity;0.0214129114754231!GO:0007033;vacuole organization and biogenesis;0.0216942805201147!GO:0000086;G2/M transition of mitotic cell cycle;0.0223198181985828!GO:0012506;vesicle membrane;0.0225619841927698!GO:0045792;negative regulation of cell size;0.0225619841927698!GO:0006405;RNA export from nucleus;0.0229068230308048!GO:0006302;double-strand break repair;0.0231771352416094!GO:0045893;positive regulation of transcription, DNA-dependent;0.0232129793254888!GO:0000226;microtubule cytoskeleton organization and biogenesis;0.0234236085264308!GO:0006284;base-excision repair;0.0236131421550735!GO:0000288;mRNA catabolic process, deadenylation-dependent decay;0.0236974286868011!GO:0006979;response to oxidative stress;0.0241424584797933!GO:0005862;muscle thin filament tropomyosin;0.0242422934377741!GO:0005099;Ras GTPase activator activity;0.024382352614531!GO:0035035;histone acetyltransferase binding;0.0245776518903759!GO:0045941;positive regulation of transcription;0.0254881000397454!GO:0042326;negative regulation of phosphorylation;0.0255268162489978!GO:0008286;insulin receptor signaling pathway;0.0256670743921314!GO:0051287;NAD binding;0.0262487577449903!GO:0030433;ER-associated protein catabolic process;0.0263889762927119!GO:0006515;misfolded or incompletely synthesized protein catabolic process;0.0263889762927119!GO:0006458;'de novo' protein folding;0.0264135269750898!GO:0051084;'de novo' posttranslational protein folding;0.0264135269750898!GO:0031124;mRNA 3'-end processing;0.0271702709087182!GO:0043549;regulation of kinase activity;0.0272720170265317!GO:0005665;DNA-directed RNA polymerase II, core complex;0.0273052665889687!GO:0030308;negative regulation of cell growth;0.0273052665889687!GO:0006220;pyrimidine nucleotide metabolic process;0.0275865478574132!GO:0016773;phosphotransferase activity, alcohol group as acceptor;0.0276898642311702!GO:0003756;protein disulfide isomerase activity;0.0281525900006718!GO:0016864;intramolecular oxidoreductase activity, transposing S-S bonds;0.0281525900006718!GO:0040029;regulation of gene expression, epigenetic;0.0282980564831164!GO:0006518;peptide metabolic process;0.0286322732125442!GO:0003690;double-stranded DNA binding;0.028961212563885!GO:0016408;C-acyltransferase activity;0.0295109614769341!GO:0007050;cell cycle arrest;0.0297379227557158!GO:0043154;negative regulation of caspase activity;0.0297410150442607!GO:0030518;steroid hormone receptor signaling pathway;0.0308372079919406!GO:0045334;clathrin-coated endocytic vesicle;0.0318591843000449!GO:0004518;nuclease activity;0.0321627401802794!GO:0005765;lysosomal membrane;0.0330478327687904!GO:0045892;negative regulation of transcription, DNA-dependent;0.0332506980733841!GO:0007052;mitotic spindle organization and biogenesis;0.0334651925560538!GO:0008312;7S RNA binding;0.0335319343695724!GO:0016584;nucleosome positioning;0.0336806624355212!GO:0033673;negative regulation of kinase activity;0.0338321111066145!GO:0006469;negative regulation of protein kinase activity;0.0338321111066145!GO:0000910;cytokinesis;0.0339677248055434!GO:0048144;fibroblast proliferation;0.0342233336979504!GO:0048145;regulation of fibroblast proliferation;0.0342233336979504!GO:0051348;negative regulation of transferase activity;0.0343268931685029!GO:0045737;positive regulation of cyclin-dependent protein kinase activity;0.0343409673515968!GO:0007346;regulation of progression through mitotic cell cycle;0.0343409673515968!GO:0016891;endoribonuclease activity, producing 5'-phosphomonoesters;0.0343409673515968!GO:0030057;desmosome;0.0345863152858567!GO:0008632;apoptotic program;0.0354196416241364!GO:0030140;trans-Golgi network transport vesicle;0.0356404557182711!GO:0046426;negative regulation of JAK-STAT cascade;0.0356404557182711!GO:0006783;heme biosynthetic process;0.0356404557182711!GO:0006778;porphyrin metabolic process;0.035778323065607!GO:0033013;tetrapyrrole metabolic process;0.035778323065607!GO:0019798;procollagen-proline dioxygenase activity;0.035877504659757!GO:0005832;chaperonin-containing T-complex;0.0359781781010425!GO:0008426;protein kinase C inhibitor activity;0.035993818427669!GO:0030128;clathrin coat of endocytic vesicle;0.035993818427669!GO:0030669;clathrin-coated endocytic vesicle membrane;0.035993818427669!GO:0030122;AP-2 adaptor complex;0.035993818427669!GO:0031301;integral to organelle membrane;0.0361511193105851!GO:0019904;protein domain specific binding;0.0361769984436776!GO:0007034;vacuolar transport;0.0366704607929501!GO:0006417;regulation of translation;0.0367065926299044!GO:0050811;GABA receptor binding;0.0370861738942622!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.0370861738942622!GO:0045047;protein targeting to ER;0.0370861738942622!GO:0019318;hexose metabolic process;0.037968724637915!GO:0016251;general RNA polymerase II transcription factor activity;0.038268618130437!GO:0004003;ATP-dependent DNA helicase activity;0.038268618130437!GO:0051052;regulation of DNA metabolic process;0.0385913105191529!GO:0043065;positive regulation of apoptosis;0.0385913105191529!GO:0008629;induction of apoptosis by intracellular signals;0.0394247606094504!GO:0006519;amino acid and derivative metabolic process;0.0404881353365409!GO:0051098;regulation of binding;0.0410838398697735!GO:0006470;protein amino acid dephosphorylation;0.0411453183486762!GO:0007242;intracellular signaling cascade;0.0415591780500058!GO:0030508;thiol-disulfide exchange intermediate activity;0.0424833781894538!GO:0031227;intrinsic to endoplasmic reticulum membrane;0.0425961558845103!GO:0035267;NuA4 histone acetyltransferase complex;0.0426723575485416!GO:0005100;Rho GTPase activator activity;0.0426723575485416!GO:0008047;enzyme activator activity;0.0426723575485416!GO:0005586;collagen type III;0.0429044372907247!GO:0008637;apoptotic mitochondrial changes;0.043093885100669!GO:0008652;amino acid biosynthetic process;0.0435178670869328!GO:0050681;androgen receptor binding;0.0437641992910059!GO:0000776;kinetochore;0.0439245598872746!GO:0048146;positive regulation of fibroblast proliferation;0.0441281787547851!GO:0043189;H4/H2A histone acetyltransferase complex;0.0441554175857041!GO:0051059;NF-kappaB binding;0.0445735230425537!GO:0008538;proteasome activator activity;0.0446711911854281!GO:0006984;ER-nuclear signaling pathway;0.0447383293270495!GO:0006007;glucose catabolic process;0.0455495726146749!GO:0005996;monosaccharide metabolic process;0.0455495726146749!GO:0016706;oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors;0.0457589848991811!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.0461227001626977!GO:0009119;ribonucleoside metabolic process;0.0464208075389955!GO:0032981;mitochondrial respiratory chain complex I assembly;0.0464841369259481!GO:0010257;NADH dehydrogenase complex assembly;0.0464841369259481!GO:0033108;mitochondrial respiratory chain complex assembly;0.0464841369259481!GO:0005092;GDP-dissociation inhibitor activity;0.0465643941927605!GO:0003945;N-acetyllactosamine synthase activity;0.0466439954383566!GO:0030833;regulation of actin filament polymerization;0.0467357041960453!GO:0007021;tubulin folding;0.0467357041960453!GO:0032507;maintenance of cellular protein localization;0.0467357041960453!GO:0000123;histone acetyltransferase complex;0.0468769860697956!GO:0007017;microtubule-based process;0.0472657908132062!GO:0048518;positive regulation of biological process;0.0473000421757268!GO:0043068;positive regulation of programmed cell death;0.0474411924230863!GO:0044438;microbody part;0.0481119337913765!GO:0044439;peroxisomal part;0.0481119337913765!GO:0045859;regulation of protein kinase activity;0.0481119337913765!GO:0006739;NADP metabolic process;0.0482706954456404!GO:0000096;sulfur amino acid metabolic process;0.0490600949804052!GO:0046588;negative regulation of calcium-dependent cell-cell adhesion;0.0490600949804052!GO:0046586;regulation of calcium-dependent cell-cell adhesion;0.0490600949804052!GO:0003923;GPI-anchor transamidase activity;0.0490600949804052!GO:0016255;attachment of GPI anchor to protein;0.0490600949804052!GO:0042765;GPI-anchor transamidase complex;0.0490600949804052!GO:0006892;post-Golgi vesicle-mediated transport;0.0492531476175184 | |||
|sample_id=11533 | |sample_id=11533 | ||
|sample_note= | |sample_note= | ||
| Line 76: | Line 104: | ||
|sample_tissue=amnion | |sample_tissue=amnion | ||
|top_motifs=GCM1,2:1.82721620593;ZNF148:1.36547302249;XCPE1{core}:1.336865768;SNAI1..3:1.26624739917;NKX2-1,4:1.25704616413;HOX{A5,B5}:1.22582847846;TEAD1:1.15812608824;TP53:1.15625112198;TBX4,5:1.1541796687;GFI1:1.1359877764;NKX2-3_NKX2-5:1.01689564011;ZEB1:1.00505927739;ZIC1..3:0.957552072278;TFAP2{A,C}:0.948619912332;ZNF384:0.925691808507;HAND1,2:0.861514270594;FOXM1:0.743144353293;GLI1..3:0.719412061374;EP300:0.68916980936;NKX2-2,8:0.683777615475;ONECUT1,2:0.676511276321;KLF4:0.673943529323;FOXL1:0.662207024544;MAZ:0.655607812739;PBX1:0.650516539476;TFCP2:0.645010713937;PAX5:0.63150436364;PPARG:0.59649404608;SP1:0.570353749836;NFY{A,B,C}:0.565012709596;E2F1..5:0.539652054824;TFDP1:0.520128436727;POU3F1..4:0.443165771597;RORA:0.435048368348;EN1,2:0.407291973118;FOS_FOS{B,L1}_JUN{B,D}:0.374493607021;HOX{A4,D4}:0.369982382363;SOX17:0.368048017653;LEF1_TCF7_TCF7L1,2:0.362149413759;EBF1:0.361891561537;TBP:0.35000326178;ZNF238:0.339987934416;POU2F1..3:0.328285195877;IKZF1:0.327523029634;AR:0.325909553999;BACH2:0.305371947568;ADNP_IRX_SIX_ZHX:0.303239704588;NR3C1:0.295908183796;RXRA_VDR{dimer}:0.24947086462;SOX{8,9,10}:0.239581622346;STAT5{A,B}:0.225513197941;GZF1:0.196640587689;TLX1..3_NFIC{dimer}:0.194034865288;HOXA9_MEIS1:0.1900320515;HMX1:0.183622311353;UFEwm:0.178300185754;GATA6:0.175784768321;HIC1:0.170991690484;JUN:0.145567489564;CDC5L:0.139001267459;GTF2A1,2:0.138199398176;HLF:0.116367300927;PAX8:0.110164856508;MYOD1:0.107021646752;TFAP2B:0.094879675512;HOX{A6,A7,B6,B7}:0.0578844453003;FOSL2:0.0425326535358;SOX2:0.0409034499463;GTF2I:0.0325174803018;DBP:-0.011511626495;TFAP4:-0.0173641071497;MYB:-0.0173816270206;LHX3,4:-0.01948257441;RXR{A,B,G}:-0.0230650897861;POU6F1:-0.023244067772;FOX{I1,J2}:-0.0240121430474;OCT4_SOX2{dimer}:-0.0417510866823;ZNF143:-0.0455601160477;TEF:-0.0597606749877;NKX3-2:-0.0621994603031;bHLH_family:-0.0724644546456;FOXA2:-0.0735432075445;HNF1A:-0.0870968320607;MED-1{core}:-0.0944306717498;NR6A1:-0.110242631628;RREB1:-0.113833124474;SPZ1:-0.114717569508;MTF1:-0.116646352485;HSF1,2:-0.121758384273;PITX1..3:-0.125968633706;NR1H4:-0.126490528037;POU1F1:-0.132396329426;ESR1:-0.14794445119;SOX5:-0.150250329338;FOXQ1:-0.151018600575;PAX4:-0.158240737629;HIF1A:-0.172902559613;ZNF423:-0.183320522192;PAX6:-0.185851531063;NHLH1,2:-0.192182529773;NFE2L2:-0.195568043577;NFE2:-0.196948499624;ESRRA:-0.232104152494;EVI1:-0.24580516045;SRF:-0.258144013097;HES1:-0.259761755436;MTE{core}:-0.270289789663;ARID5B:-0.271260797418;PAX2:-0.299627961196;ELK1,4_GABP{A,B1}:-0.302969002732;MYBL2:-0.317238115896;NFKB1_REL_RELA:-0.325293795022;NANOG:-0.330079923196;HNF4A_NR2F1,2:-0.33101977581;VSX1,2:-0.33982209489;STAT1,3:-0.340855165544;MZF1:-0.346636218567;ALX1:-0.362518823967;TOPORS:-0.363052756636;T:-0.372141342859;FOXO1,3,4:-0.377658275747;NFIL3:-0.377871335213;CRX:-0.394724811599;GFI1B:-0.397473501412;MEF2{A,B,C,D}:-0.406098091801;XBP1:-0.411063331964;RFX1:-0.413122635991;NR5A1,2:-0.413418287348;ZBTB6:-0.41703100652;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.429764797035;ATF6:-0.430420524282;NRF1:-0.452041646262;TLX2:-0.458762491654;CEBPA,B_DDIT3:-0.484524501981;ETS1,2:-0.486714371991;AIRE:-0.49511111091;BREu{core}:-0.497761170197;NFATC1..3:-0.500075950702;ELF1,2,4:-0.500460390718;ATF2:-0.512075707163;PDX1:-0.512254566021;PAX1,9:-0.525428477271;FOXN1:-0.52750838484;SMAD1..7,9:-0.547725311123;YY1:-0.554313501587;ALX4:-0.565923560781;PRRX1,2:-0.571332268327;PATZ1:-0.581365280424;RUNX1..3:-0.590776145122;CUX2:-0.621538442249;HMGA1,2:-0.626058507227;PAX3,7:-0.636063083177;SPIB:-0.644532140444;SPI1:-0.648199195284;FOXP3:-0.65542585077;EGR1..3:-0.665035685004;ATF4:-0.708028006681;LMO2:-0.716699211216;FOX{F1,F2,J1}:-0.73741605183;PRDM1:-0.752402483982;ZFP161:-0.764841832752;BPTF:-0.769950533344;TAL1_TCF{3,4,12}:-0.77233223005;FOXP1:-0.775495853033;REST:-0.785823500392;MYFfamily:-0.817165911573;HBP1_HMGB_SSRP1_UBTF:-0.821923720531;CREB1:-0.826108389899;GATA4:-0.858214228897;NFIX:-0.864315552621;NFE2L1:-0.866470514587;IRF7:-0.88395524209;ATF5_CREB3:-0.923678206428;FOX{D1,D2}:-0.931617369006;STAT2,4,6:-0.988060146959;IRF1,2:-1.02354237475;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-1.03870001236;SREBF1,2:-1.07550286878;RBPJ:-1.08213184188;NANOG{mouse}:-1.10781535495;CDX1,2,4:-1.14312961634;DMAP1_NCOR{1,2}_SMARC:-1.15452551554;TGIF1:-1.15747018378;RFX2..5_RFXANK_RFXAP:-1.16355760211;POU5F1:-1.24306939758;NKX3-1:-1.24755781393;AHR_ARNT_ARNT2:-1.25938776137;IKZF2:-1.2615546707;MAFB:-1.2681511697;FOXD3:-1.39034077857;ZBTB16:-1.5617640549;NKX6-1,2:-1.84087671813 | |top_motifs=GCM1,2:1.82721620593;ZNF148:1.36547302249;XCPE1{core}:1.336865768;SNAI1..3:1.26624739917;NKX2-1,4:1.25704616413;HOX{A5,B5}:1.22582847846;TEAD1:1.15812608824;TP53:1.15625112198;TBX4,5:1.1541796687;GFI1:1.1359877764;NKX2-3_NKX2-5:1.01689564011;ZEB1:1.00505927739;ZIC1..3:0.957552072278;TFAP2{A,C}:0.948619912332;ZNF384:0.925691808507;HAND1,2:0.861514270594;FOXM1:0.743144353293;GLI1..3:0.719412061374;EP300:0.68916980936;NKX2-2,8:0.683777615475;ONECUT1,2:0.676511276321;KLF4:0.673943529323;FOXL1:0.662207024544;MAZ:0.655607812739;PBX1:0.650516539476;TFCP2:0.645010713937;PAX5:0.63150436364;PPARG:0.59649404608;SP1:0.570353749836;NFY{A,B,C}:0.565012709596;E2F1..5:0.539652054824;TFDP1:0.520128436727;POU3F1..4:0.443165771597;RORA:0.435048368348;EN1,2:0.407291973118;FOS_FOS{B,L1}_JUN{B,D}:0.374493607021;HOX{A4,D4}:0.369982382363;SOX17:0.368048017653;LEF1_TCF7_TCF7L1,2:0.362149413759;EBF1:0.361891561537;TBP:0.35000326178;ZNF238:0.339987934416;POU2F1..3:0.328285195877;IKZF1:0.327523029634;AR:0.325909553999;BACH2:0.305371947568;ADNP_IRX_SIX_ZHX:0.303239704588;NR3C1:0.295908183796;RXRA_VDR{dimer}:0.24947086462;SOX{8,9,10}:0.239581622346;STAT5{A,B}:0.225513197941;GZF1:0.196640587689;TLX1..3_NFIC{dimer}:0.194034865288;HOXA9_MEIS1:0.1900320515;HMX1:0.183622311353;UFEwm:0.178300185754;GATA6:0.175784768321;HIC1:0.170991690484;JUN:0.145567489564;CDC5L:0.139001267459;GTF2A1,2:0.138199398176;HLF:0.116367300927;PAX8:0.110164856508;MYOD1:0.107021646752;TFAP2B:0.094879675512;HOX{A6,A7,B6,B7}:0.0578844453003;FOSL2:0.0425326535358;SOX2:0.0409034499463;GTF2I:0.0325174803018;DBP:-0.011511626495;TFAP4:-0.0173641071497;MYB:-0.0173816270206;LHX3,4:-0.01948257441;RXR{A,B,G}:-0.0230650897861;POU6F1:-0.023244067772;FOX{I1,J2}:-0.0240121430474;OCT4_SOX2{dimer}:-0.0417510866823;ZNF143:-0.0455601160477;TEF:-0.0597606749877;NKX3-2:-0.0621994603031;bHLH_family:-0.0724644546456;FOXA2:-0.0735432075445;HNF1A:-0.0870968320607;MED-1{core}:-0.0944306717498;NR6A1:-0.110242631628;RREB1:-0.113833124474;SPZ1:-0.114717569508;MTF1:-0.116646352485;HSF1,2:-0.121758384273;PITX1..3:-0.125968633706;NR1H4:-0.126490528037;POU1F1:-0.132396329426;ESR1:-0.14794445119;SOX5:-0.150250329338;FOXQ1:-0.151018600575;PAX4:-0.158240737629;HIF1A:-0.172902559613;ZNF423:-0.183320522192;PAX6:-0.185851531063;NHLH1,2:-0.192182529773;NFE2L2:-0.195568043577;NFE2:-0.196948499624;ESRRA:-0.232104152494;EVI1:-0.24580516045;SRF:-0.258144013097;HES1:-0.259761755436;MTE{core}:-0.270289789663;ARID5B:-0.271260797418;PAX2:-0.299627961196;ELK1,4_GABP{A,B1}:-0.302969002732;MYBL2:-0.317238115896;NFKB1_REL_RELA:-0.325293795022;NANOG:-0.330079923196;HNF4A_NR2F1,2:-0.33101977581;VSX1,2:-0.33982209489;STAT1,3:-0.340855165544;MZF1:-0.346636218567;ALX1:-0.362518823967;TOPORS:-0.363052756636;T:-0.372141342859;FOXO1,3,4:-0.377658275747;NFIL3:-0.377871335213;CRX:-0.394724811599;GFI1B:-0.397473501412;MEF2{A,B,C,D}:-0.406098091801;XBP1:-0.411063331964;RFX1:-0.413122635991;NR5A1,2:-0.413418287348;ZBTB6:-0.41703100652;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.429764797035;ATF6:-0.430420524282;NRF1:-0.452041646262;TLX2:-0.458762491654;CEBPA,B_DDIT3:-0.484524501981;ETS1,2:-0.486714371991;AIRE:-0.49511111091;BREu{core}:-0.497761170197;NFATC1..3:-0.500075950702;ELF1,2,4:-0.500460390718;ATF2:-0.512075707163;PDX1:-0.512254566021;PAX1,9:-0.525428477271;FOXN1:-0.52750838484;SMAD1..7,9:-0.547725311123;YY1:-0.554313501587;ALX4:-0.565923560781;PRRX1,2:-0.571332268327;PATZ1:-0.581365280424;RUNX1..3:-0.590776145122;CUX2:-0.621538442249;HMGA1,2:-0.626058507227;PAX3,7:-0.636063083177;SPIB:-0.644532140444;SPI1:-0.648199195284;FOXP3:-0.65542585077;EGR1..3:-0.665035685004;ATF4:-0.708028006681;LMO2:-0.716699211216;FOX{F1,F2,J1}:-0.73741605183;PRDM1:-0.752402483982;ZFP161:-0.764841832752;BPTF:-0.769950533344;TAL1_TCF{3,4,12}:-0.77233223005;FOXP1:-0.775495853033;REST:-0.785823500392;MYFfamily:-0.817165911573;HBP1_HMGB_SSRP1_UBTF:-0.821923720531;CREB1:-0.826108389899;GATA4:-0.858214228897;NFIX:-0.864315552621;NFE2L1:-0.866470514587;IRF7:-0.88395524209;ATF5_CREB3:-0.923678206428;FOX{D1,D2}:-0.931617369006;STAT2,4,6:-0.988060146959;IRF1,2:-1.02354237475;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-1.03870001236;SREBF1,2:-1.07550286878;RBPJ:-1.08213184188;NANOG{mouse}:-1.10781535495;CDX1,2,4:-1.14312961634;DMAP1_NCOR{1,2}_SMARC:-1.15452551554;TGIF1:-1.15747018378;RFX2..5_RFXANK_RFXAP:-1.16355760211;POU5F1:-1.24306939758;NKX3-1:-1.24755781393;AHR_ARNT_ARNT2:-1.25938776137;IKZF2:-1.2615546707;MAFB:-1.2681511697;FOXD3:-1.39034077857;ZBTB16:-1.5617640549;NKX6-1,2:-1.84087671813 | ||
|xref= | |||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11533-120A3;search_select_hide=table117:FF:11533-120A3 | |||
}} | }} | ||
Latest revision as of 18:07, 4 June 2020
| Name: | Amniotic Epithelial Cells, donor1 |
|---|---|
| Species: | Human (Homo sapiens) |
| Library ID: | CNhs11341 |
| Sample type: | primary cells |
| Genomic View: | UCSC |
| RefEX: | Specific genes |
| FANTOM CAT: | 1, 2, 3, 4, 5, 6 |
| CAGEd-oPOSSUM: | link |
| ZENBU report : | link |
| Additional information | ||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Sample information
RNA information
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| CAGE Accession numbers | ||||||||||||||||||||||||||||||||||||||||||||||
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| Download raw sequence, BAM & CTSS | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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| RNA-Seq Accession numbers | ||||||||||||||||||||||||||||||||
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11341
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11341
| Novel motif | Logo | P-value |
|---|---|---|
| 1 | 1 | 0.366 |
| 10 | 10 | 0.584 |
| 100 | 100 | 0.806 |
| 101 | 101 | 0.506 |
| 102 | 102 | 0.996 |
| 103 | 103 | 0.17 |
| 104 | 104 | 0.881 |
| 105 | 105 | 0.0895 |
| 106 | 106 | 0.0472 |
| 107 | 107 | 0.051 |
| 108 | 108 | 0.379 |
| 109 | 109 | 0.0497 |
| 11 | 11 | 0.633 |
| 110 | 110 | 0.0958 |
| 111 | 111 | 0.827 |
| 112 | 112 | 0.723 |
| 113 | 113 | 9.44878e-5 |
| 114 | 114 | 0.875 |
| 115 | 115 | 0.361 |
| 116 | 116 | 0.883 |
| 117 | 117 | 0.31 |
| 118 | 118 | 0.257 |
| 119 | 119 | 0.413 |
| 12 | 12 | 0.711 |
| 120 | 120 | 0.346 |
| 121 | 121 | 0.16 |
| 122 | 122 | 0.227 |
| 123 | 123 | 0.169 |
| 124 | 124 | 0.182 |
| 125 | 125 | 0.308 |
| 126 | 126 | 0.149 |
| 127 | 127 | 0.561 |
| 128 | 128 | 0.672 |
| 129 | 129 | 0.172 |
| 13 | 13 | 0.277 |
| 130 | 130 | 0.604 |
| 131 | 131 | 0.0225 |
| 132 | 132 | 0.411 |
| 133 | 133 | 0.486 |
| 134 | 134 | 0.0914 |
| 135 | 135 | 0.533 |
| 136 | 136 | 0.118 |
| 137 | 137 | 0.12 |
| 138 | 138 | 0.275 |
| 139 | 139 | 0.153 |
| 14 | 14 | 0.985 |
| 140 | 140 | 0.631 |
| 141 | 141 | 0.6 |
| 142 | 142 | 0.558 |
| 143 | 143 | 0.734 |
| 144 | 144 | 0.944 |
| 145 | 145 | 0.681 |
| 146 | 146 | 0.0466 |
| 147 | 147 | 0.18 |
| 148 | 148 | 0.121 |
| 149 | 149 | 0.129 |
| 15 | 15 | 0.974 |
| 150 | 150 | 0.141 |
| 151 | 151 | 0.326 |
| 152 | 152 | 0.0636 |
| 153 | 153 | 0.136 |
| 154 | 154 | 0.444 |
| 155 | 155 | 0.2 |
| 156 | 156 | 0.245 |
| 157 | 157 | 0.62 |
| 158 | 158 | 0.413 |
| 159 | 159 | 0.451 |
| 16 | 16 | 0.193 |
| 160 | 160 | 0.0701 |
| 161 | 161 | 0.213 |
| 162 | 162 | 0.197 |
| 163 | 163 | 0.475 |
| 164 | 164 | 0.949 |
| 165 | 165 | 0.808 |
| 166 | 166 | 0.15 |
| 167 | 167 | 0.221 |
| 168 | 168 | 0.533 |
| 169 | 169 | 0.0599 |
| 17 | 17 | 0.144 |
| 18 | 18 | 0.36 |
| 19 | 19 | 0.522 |
| 2 | 2 | 0.0802 |
| 20 | 20 | 0.892 |
| 21 | 21 | 0.361 |
| 22 | 22 | 0.142 |
| 23 | 23 | 0.134 |
| 24 | 24 | 0.844 |
| 25 | 25 | 0.736 |
| 26 | 26 | 0.412 |
| 27 | 27 | 0.463 |
| 28 | 28 | 0.853 |
| 29 | 29 | 0.766 |
| 3 | 3 | 0.989 |
| 30 | 30 | 0.107 |
| 31 | 31 | 0.819 |
| 32 | 32 | 0.13 |
| 33 | 33 | 0.113 |
| 34 | 34 | 0.515 |
| 35 | 35 | 0.0391 |
| 36 | 36 | 0.183 |
| 37 | 37 | 0.963 |
| 38 | 38 | 0.725 |
| 39 | 39 | 0.156 |
| 4 | 4 | 0.513 |
| 40 | 40 | 0.0461 |
| 41 | 41 | 0.776 |
| 42 | 42 | 0.901 |
| 43 | 43 | 0.309 |
| 44 | 44 | 0.921 |
| 45 | 45 | 0.102 |
| 46 | 46 | 0.777 |
| 47 | 47 | 0.736 |
| 48 | 48 | 0.183 |
| 49 | 49 | 0.289 |
| 5 | 5 | 0.996 |
| 50 | 50 | 0.363 |
| 51 | 51 | 0.399 |
| 52 | 52 | 0.259 |
| 53 | 53 | 0.652 |
| 54 | 54 | 0.563 |
| 55 | 55 | 0.224 |
| 56 | 56 | 0.339 |
| 57 | 57 | 0.502 |
| 58 | 58 | 0.653 |
| 59 | 59 | 0.174 |
| 6 | 6 | 0.759 |
| 60 | 60 | 0.541 |
| 61 | 61 | 0.437 |
| 62 | 62 | 0.802 |
| 63 | 63 | 0.492 |
| 64 | 64 | 0.225 |
| 65 | 65 | 0.438 |
| 66 | 66 | 0.115 |
| 67 | 67 | 0.597 |
| 68 | 68 | 0.897 |
| 69 | 69 | 0.00108 |
| 7 | 7 | 0.3 |
| 70 | 70 | 0.792 |
| 71 | 71 | 0.468 |
| 72 | 72 | 0.705 |
| 73 | 73 | 0.0762 |
| 74 | 74 | 0.13 |
| 75 | 75 | 0.503 |
| 76 | 76 | 0.153 |
| 77 | 77 | 0.0319 |
| 78 | 78 | 0.417 |
| 79 | 79 | 0.553 |
| 8 | 8 | 0.72 |
| 80 | 80 | 0.61 |
| 81 | 81 | 0.672 |
| 82 | 82 | 0.547 |
| 83 | 83 | 0.985 |
| 84 | 84 | 0.519 |
| 85 | 85 | 0.586 |
| 86 | 86 | 0.28 |
| 87 | 87 | 0.941 |
| 88 | 88 | 0.227 |
| 89 | 89 | 0.185 |
| 9 | 9 | 0.391 |
| 90 | 90 | 0.354 |
| 91 | 91 | 0.266 |
| 92 | 92 | 0.537 |
| 93 | 93 | 0.57 |
| 94 | 94 | 0.668 |
| 95 | 95 | 0.554 |
| 96 | 96 | 0.577 |
| 97 | 97 | 0.269 |
| 98 | 98 | 0.965 |
| 99 | 99 | 0.0202 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs11341
FANTOM5 (FF) ontology
Direct parent terms
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000066 (epithelial cell)
0002371 (somatic cell)
0000349 (extraembryonic cell)
0000255 (eukaryotic cell)
0002536 (amniotic epithelial cell)
UBERON: Anatomy
0000468 (multi-cellular organism)
0000305 (amnion)
0004121 (ectoderm-derived structure)
0000064 (organ part)
0000062 (organ)
0004120 (mesoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0004923 (organ component layer)
0005631 (extraembryonic membrane)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0000478 (extraembryonic structure)
0010317 (germ layer / neural crest derived structure)
0000158 (membranous layer)
FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000009 (human amniotic epithelial cell sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
NA
