FF:11254-116F3: Difference between revisions
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{{f5samples | {{f5samples | ||
|ancestors_in_anatomy_facet=UBERON: | |DRA_sample_Accession=CAGE@SAMD00005323 | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL: | |DRA_sample_Accession_RNASeq=sRNA-Seq@SAMD00005323 | ||
|accession_numbers=CAGE;DRX008422;DRR009294;DRZ000719;DRZ002104;DRZ012069;DRZ013454 | |||
|accession_numbers_RNASeq=sRNA-Seq;DRX037157;DRR041523;DRZ007165 | |||
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0002367,UBERON:0002384,UBERON:0000479,UBERON:0005156,UBERON:0004119,UBERON:0000062,UBERON:0004120,UBERON:0000077,UBERON:0000061,UBERON:0000465,UBERON:0000990,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0002530,UBERON:0010147,UBERON:0010317,UBERON:0003937,UBERON:0005399,UBERON:0003101,UBERON:0000079 | |||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0002320,CL:0002371,CL:0000499,CL:0000255,CL:0002622 | |||
|ancestors_in_disease_facet= | |ancestors_in_disease_facet= | ||
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000001,FF:0000277 | |||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|data_phase=2 | |||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score=chr6:134210243..134210257,+!p1@TCF21!2.11!128.25!TCF21;;chr16:86544113..86544145,+!p1@FOXF1!2.06!140.65!FOXF1;;chr5:134369879..134369898,-!p2@PITX1!1.93!84.62!PITX1;;chr5:134369905..134369972,-!p1@PITX1!1.77!87.03!PITX1;;chr15:57511609..57511651,+!p2@TCF12!1.62!66.48!TCF12;;chr11:46299199..46299233,+!p1@CREB3L1!1.56!175.55!CREB3L1;;chr10:28034739..28034756,-!p1@MKX!1.36!21.70!MKX;;chr11:46299539..46299620,+!p2@CREB3L1!1.28!30.66!CREB3L1;;chr17:26697276..26697303,-!p2@SEBOX,p2@VTN!1.24!16.30!SEBOX;;chr7:27224842..27224872,-!p1@HOXA11!1.17!13.78!HOXA11;;chr18:19749541..19749557,+!p1@GATA6!1.14!40.07!GATA6;;chr6:1389789..1389821,+!p1@FOXF2!1.12!16.76!FOXF2;;chr5:92918919..92918942,+!p1@NR2F1!1.10!52.24!NR2F1;;chr17:59477233..59477263,+!p1@TBX2!1.06!32.72!TBX2;;chr5:174151553..174151610,+!p1@MSX2!1.06!17.68!MSX2;;chr19:45260775..45260838,+!p5@BCL3!1.02!12.40!BCL3;;chr2:239756671..239756732,+!p1@TWIST2!1.01!29.97!TWIST2;;chr7:27224795..27224840,-!p2@HOXA11!0.99!8.73!HOXA11;;chr3:25469724..25469773,+!p1@RARB!0.98!12.63!RARB;;chr5:174151612..174151633,+!p2@MSX2!0.97!8.27!MSX2;;chr18:19749386..19749404,+!p2@GATA6!0.96!11.71!GATA6;;chr5:92919100..92919135,+!p3@NR2F1!0.96!9.87!NR2F1;;chr15:67430351..67430366,+!p10@SMAD3!0.93!7.58!SMAD3;;chr17:26697304..26697335,-!p1@SEBOX,p1@VTN!0.93!7.46!SEBOX;;chr7:27239703..27239715,-!p1@HOXA13!0.92!7.35!HOXA13;;chr5:92918956..92918969,+!p4@NR2F1!0.91!7.81!NR2F1;;chrY:21906594..21906622,-!p1@KDM5D!0.89!6.77!KDM5D;;chr14:61116183..61116208,-!p1@SIX1!0.88!26.18!SIX1;;chr2:239756739..239756755,+!p2@TWIST2!0.86!11.14!TWIST2;;chr3:141121847..141121868,+!p5@ZBTB38!0.82!8.73!ZBTB38;;chr15:57511589..57511608,+!p4@TCF12!0.81!5.51!TCF12;;chr7:27205136..27205164,-!p1@HOXA9!0.81!5.40!HOXA9;;chr7:27213893..27213954,-!p1@HOXA10!0.81!5.40!HOXA10;;chr15:42749722..42749739,-!p2@ZFP106!0.80!9.99!ZFP106;;chr7:27239740..27239759,-!p2@HOXA13!0.79!5.17!HOXA13;;chr11:65667884..65667895,-!p2@FOSL1!0.78!21.13!FOSL1;;chr8:99956662..99956684,+!p1@OSR2!0.78!8.04!OSR2;;chr10:63809106..63809127,+!p1@ARID5B!0.77!72.10!ARID5B;;chr12:115121962..115121987,-!p1@TBX3!0.77!44.66!TBX3;;chr2:66662281..66662308,+!p1@MEIS1!0.77!18.37!MEIS1;;chr8:72756667..72756736,-!p2@MSC!0.77!7.92!MSC;;chr17:59477275..59477286,+!p3@TBX2!0.75!6.31!TBX2;;chr8:72756637..72756664,-!p3@MSC!0.75!5.28!MSC;;chr5:92919375..92919438,+!p6@NR2F1!0.75!5.05!NR2F1;;chr3:25470156..25470227,+!p2@RARB!0.75!4.59!RARB;;chr1:170633348..170633399,+!p2@PRRX1!0.74!6.31!PRRX1;;chr10:28032421..28032494,-!p2@MKX!0.74!4.48!MKX;;chr11:46333934..46333963,+!p5@CREB3L1!0.74!4.48!CREB3L1;;chr9:132427883..132427951,+!p2@PRRX2!0.74!4.48!PRRX2;;chr6:126102292..126102329,+!p3@NCOA7!0.73!15.61!NCOA7;;chr5:92919068..92919082,+!p5@NR2F1!0.73!5.28!NR2F1;;chr7:27205106..27205134,-!p2@HOXA9!0.73!4.36!HOXA9;;chr3:128206762..128206781,-!p2@GATA2!0.72!29.28!GATA2;;chr16:31076332..31076388,-!p3@ZNF668!0.71!4.13!ZNF668;;chr2:19558373..19558392,-!p1@OSR1!0.70!12.06!OSR1;;chr17:1959369..1959388,+!p2@HIC1!0.70!11.71!HIC1;;chr11:46299186..46299195,+!p3@CREB3L1!0.70!4.59!CREB3L1;;chrY:2803415..2803468,+!p1@ZFY!0.70!4.02!ZFY;;chr11:65686802..65686818,+!p6@DRAP1!0.69!7.35!DRAP1;;chr9:132427972..132428056,+!p1@PRRX2!0.69!5.28!PRRX2;;chr2:66662396..66662407,+!p4@MEIS1!0.69!3.90!MEIS1;;chr6:34204921..34204939,+!p3@HMGA1!0.68!130.89!HMGA1;;chr11:65687362..65687436,+!p3@DRAP1!0.68!19.75!DRAP1;;chr2:66662510..66662521,+!p6@MEIS1!0.68!3.79!MEIS1;;chr18:19749517..19749531,+!p3@GATA6!0.67!7.00!GATA6;;chr7:27192185..27192209,-!p1@HOXA3!0.67!3.67!HOXA3;;chr7:27196267..27196311,-!p1@HOXA7!0.66!3.56!HOXA7;;chr2:66662249..66662267,+!p2@MEIS1!0.65!15.16!MEIS1;;chr15:67430381..67430396,+!p21@SMAD3!0.65!3.44!SMAD3;;chr5:321810..321877,+!p1@AHRR!0.64!12.17!AHRR;;chr19:13134772..13134822,+!p2@NFIX!0.63!5.17!NFIX;;chr15:83953397..83953425,-!p1@BNC1!0.63!3.90!BNC1;;chr2:178128149..178128198,-!p2@NFE2L2!0.62!19.86!NFE2L2;;chr11:46299443..46299459,+!p4@CREB3L1!0.62!3.21!CREB3L1;;chr12:100867653..100867677,+!p2@NR1H4!0.62!3.21!NR1H4;;chr2:121493492..121493537,+!p2@GLI2!0.61!5.51!GLI2;;chr11:65686732..65686756,+!p2@DRAP1!0.60!14.70!DRAP1;;chr2:121493425..121493474,+!p1@GLI2!0.60!7.46!GLI2;;chr6:1389824..1389840,+!p3@FOXF2!0.60!2.99!FOXF2;;chr1:164528445..164528459,+!p2@PBX1!0.59!10.45!PBX1;;chr3:25469815..25469866,+!p3@RARB!0.59!2.87!RARB;;chr17:1958388..1958404,+!p1@HIC1!0.58!21.81!HIC1;;chr2:185463247..185463263,+!p1@ZNF804A!0.58!5.51!ZNF804A;;chr15:76629123..76629151,+!p1@ISL2!0.58!3.21!ISL2;;chr10:63853436..63853442,+!p4@ARID5B!0.57!17.57!ARID5B;;chr1:158979872..158979898,+!p3@IFI16!0.57!9.87!IFI16;;chr2:66662895..66662907,+!p3@MEIS1!0.57!3.56!MEIS1;;chr12:100867627..100867652,+!p1@NR1H4!0.57!2.76!NR1H4;;chr17:46132044..46132080,+!p4@NFE2L1!0.57!2.76!NFE2L1;;chr7:1577899..1577943,+!p3@MAFK!0.57!2.76!MAFK;;chr10:63809013..63809041,+!p3@ARID5B!0.56!17.80!ARID5B;;chr12:27485762..27485776,+!p3@ARNTL2!0.56!8.38!ARNTL2;;chr3:12329397..12329433,+!p2@PPARG!0.56!7.00!PPARG;;chr17:26697257..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| 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| ||
|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000222;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000499;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002622;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000079;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000161;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000990;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001353;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002367;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0004122;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0005153;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0005157;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0005399;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0005911 | |||
|ffid_belonging_in_development=CL:0000134 | |||
|fonse_cell_line= | |fonse_cell_line= | ||
|fonse_cell_line_closure= | |fonse_cell_line_closure= | ||
| Line 35: | Line 44: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Prostate%2520Stromal%2520Cells%252c%2520donor1.CNhs10883.11254-116F3.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Prostate%2520Stromal%2520Cells%252c%2520donor1.CNhs10883.11254-116F3.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Prostate%2520Stromal%2520Cells%252c%2520donor1.CNhs10883.11254-116F3.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Prostate%2520Stromal%2520Cells%252c%2520donor1.CNhs10883.11254-116F3.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Prostate%2520Stromal%2520Cells%252c%2520donor1.CNhs10883.11254-116F3.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:11254-116F3 | |id=FF:11254-116F3 | ||
|is_a=EFO:0002091;;FF: | |is_a=EFO:0002091;;FF:0000277 | ||
|is_obsolete= | |||
|library_id=CNhs10883 | |||
|library_id_phase_based=2:CNhs10883 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11254 | |||
|microRNAs_nonnovel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#srna;sample;SRhi10010.CCGTCC.11254 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11254 | |||
|microRNAs_novel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer_novel/#/human#srna;sample;SRhi10010.CCGTCC.11254 | |||
|name=Prostate Stromal Cells, donor1 | |name=Prostate Stromal Cells, donor1 | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
| Line 42: | Line 65: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs10883,LSID703,release008,COMPLETED | |profile_hcage=CNhs10883,LSID703,release008,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=SRhi10010,,, | |profile_srnaseq=SRhi10010,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
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| |||
|rna_box=116 | |rna_box=116 | ||
|rna_catalog_number=N/A | |rna_catalog_number=N/A | ||
| Line 56: | Line 82: | ||
|rna_tube_id=116F3 | |rna_tube_id=116F3 | ||
|rna_weight_ug=45.33466667 | |rna_weight_ug=45.33466667 | ||
|rnaseq_library_id=SRhi10010.CCGTCC | |||
|sample_age=55 | |sample_age=55 | ||
|sample_category=primary cells | |||
|sample_cell_catalog=CC-2508 | |sample_cell_catalog=CC-2508 | ||
|sample_cell_line= | |sample_cell_line= | ||
| Line 69: | Line 97: | ||
|sample_ethnicity=C | |sample_ethnicity=C | ||
|sample_experimental_condition= | |sample_experimental_condition= | ||
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;6.05202169080561e-233!GO:0005737;cytoplasm;3.46759462896138e-191!GO:0043226;organelle;4.4301845829322e-187!GO:0043229;intracellular organelle;1.26624487040215e-186!GO:0043231;intracellular membrane-bound organelle;2.03121543070166e-186!GO:0043227;membrane-bound organelle;4.34514275324666e-186!GO:0044422;organelle part;8.03904585456041e-151!GO:0044446;intracellular organelle part;2.44184826770311e-149!GO:0044444;cytoplasmic part;2.44722930706571e-140!GO:0032991;macromolecular complex;3.03678024662283e-103!GO:0030529;ribonucleoprotein complex;7.44137443775657e-92!GO:0044238;primary metabolic process;1.05218779160213e-86!GO:0044237;cellular metabolic process;2.26045201903492e-86!GO:0043170;macromolecule metabolic process;1.54751786872139e-79!GO:0005515;protein binding;2.26115819116186e-78!GO:0043233;organelle lumen;1.1244827736213e-74!GO:0031974;membrane-enclosed lumen;1.1244827736213e-74!GO:0044428;nuclear part;8.57844073830698e-74!GO:0005634;nucleus;3.17326997642012e-69!GO:0003723;RNA binding;1.24141497413154e-68!GO:0005739;mitochondrion;9.63805068867524e-67!GO:0005840;ribosome;8.91953809725334e-56!GO:0019538;protein metabolic process;7.78661185362861e-54!GO:0016043;cellular component organization and biogenesis;1.93305446837275e-52!GO:0031090;organelle membrane;5.09613778773803e-52!GO:0006412;translation;1.08830083124799e-51!GO:0043234;protein complex;2.69046930109514e-51!GO:0003735;structural constituent of ribosome;6.59298567405676e-49!GO:0006396;RNA processing;6.59298567405676e-49!GO:0044260;cellular macromolecule metabolic process;1.99916434513132e-47!GO:0044267;cellular protein metabolic process;1.07785680702425e-46!GO:0044429;mitochondrial part;8.80332585908156e-45!GO:0015031;protein transport;5.80584658958446e-44!GO:0031981;nuclear lumen;6.78649271675697e-44!GO:0033036;macromolecule localization;7.68655303398961e-44!GO:0009058;biosynthetic process;7.16097310741117e-43!GO:0033279;ribosomal subunit;3.92391336590252e-42!GO:0044249;cellular biosynthetic process;4.80953804075518e-42!GO:0031967;organelle envelope;1.0130364089972e-41!GO:0031975;envelope;2.64045323922101e-41!GO:0005829;cytosol;4.91450296570622e-41!GO:0045184;establishment of protein localization;8.2465822112872e-41!GO:0008104;protein localization;1.41730682221862e-40!GO:0009059;macromolecule biosynthetic process;1.16608579231254e-39!GO:0043283;biopolymer metabolic process;1.54551538375175e-39!GO:0016071;mRNA metabolic process;1.00994522240407e-37!GO:0046907;intracellular transport;2.99887494549803e-36!GO:0010467;gene expression;7.56635288682518e-35!GO:0008380;RNA splicing;8.69897437669273e-35!GO:0065003;macromolecular complex assembly;1.47051074304606e-34!GO:0043228;non-membrane-bound organelle;2.34157784901114e-34!GO:0043232;intracellular non-membrane-bound organelle;2.34157784901114e-34!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;2.64996629414212e-34!GO:0006996;organelle organization and biogenesis;1.43192796754238e-33!GO:0006397;mRNA processing;6.18724868343046e-33!GO:0022613;ribonucleoprotein complex biogenesis and assembly;2.13725138355983e-32!GO:0005830;cytosolic ribosome (sensu Eukaryota);3.01857177363246e-31!GO:0022607;cellular component assembly;4.26612760175504e-31!GO:0006886;intracellular protein transport;2.08769892760751e-29!GO:0005740;mitochondrial envelope;4.31333041742963e-29!GO:0007049;cell cycle;4.0974065088645e-28!GO:0006259;DNA metabolic process;1.67777097521818e-27!GO:0031966;mitochondrial membrane;1.93478065771411e-27!GO:0019866;organelle inner membrane;9.67312553799784e-27!GO:0005654;nucleoplasm;3.09103927230629e-26!GO:0005681;spliceosome;5.23226433264877e-26!GO:0005743;mitochondrial inner membrane;8.40608811664814e-25!GO:0044445;cytosolic part;5.35209672991061e-24!GO:0051649;establishment of cellular localization;5.35209672991061e-24!GO:0005783;endoplasmic reticulum;5.96022433174676e-24!GO:0051641;cellular localization;7.10713392837028e-24!GO:0012505;endomembrane system;1.90759186029911e-22!GO:0000166;nucleotide binding;2.32427970982686e-22!GO:0006457;protein folding;3.82065428190915e-22!GO:0015935;small ribosomal subunit;5.66452121839311e-22!GO:0022402;cell cycle process;5.7294018806516e-22!GO:0006119;oxidative phosphorylation;7.61995558773947e-22!GO:0000278;mitotic cell cycle;1.16994425073876e-21!GO:0016462;pyrophosphatase activity;1.67016565841345e-21!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;1.93635284054438e-21!GO:0016817;hydrolase activity, acting on acid anhydrides;3.11441214373323e-21!GO:0015934;large ribosomal subunit;3.35859266416867e-21!GO:0044451;nucleoplasm part;4.48047859034678e-21!GO:0017111;nucleoside-triphosphatase activity;1.01931762977345e-20!GO:0048770;pigment granule;4.57371601366687e-20!GO:0042470;melanosome;4.57371601366687e-20!GO:0044455;mitochondrial membrane part;1.23938007907392e-19!GO:0044432;endoplasmic reticulum part;4.64983943466012e-19!GO:0031980;mitochondrial lumen;6.25718267153361e-19!GO:0005759;mitochondrial matrix;6.25718267153361e-19!GO:0005730;nucleolus;7.04487018577449e-19!GO:0022618;protein-RNA complex assembly;9.74042486137531e-19!GO:0000502;proteasome complex (sensu Eukaryota);7.28694809778302e-18!GO:0003676;nucleic acid binding;9.43415901046213e-18!GO:0000087;M phase of mitotic cell cycle;2.4804425891089e-17!GO:0016874;ligase activity;2.8237095134146e-17!GO:0051186;cofactor metabolic process;3.7333688985512e-17!GO:0007067;mitosis;4.12211180590848e-17!GO:0006974;response to DNA damage stimulus;5.76520894454251e-17!GO:0008135;translation factor activity, nucleic acid binding;1.13396112415103e-16!GO:0043285;biopolymer catabolic process;1.59805738227089e-16!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);2.46481894379075e-16!GO:0005746;mitochondrial respiratory chain;2.84517550051511e-16!GO:0044265;cellular macromolecule catabolic process;3.70017001242782e-16!GO:0051603;proteolysis involved in cellular protein catabolic process;3.96464749995217e-16!GO:0022403;cell cycle phase;4.12422433207771e-16!GO:0032553;ribonucleotide binding;5.82297413303893e-16!GO:0032555;purine ribonucleotide binding;5.82297413303893e-16!GO:0019941;modification-dependent protein catabolic process;6.85816375227596e-16!GO:0043632;modification-dependent macromolecule catabolic process;6.85816375227596e-16!GO:0006512;ubiquitin cycle;7.65838058143822e-16!GO:0006511;ubiquitin-dependent protein catabolic process;8.47883872824476e-16!GO:0005761;mitochondrial ribosome;1.02580697043444e-15!GO:0000313;organellar ribosome;1.02580697043444e-15!GO:0044257;cellular protein catabolic process;1.16508150270613e-15!GO:0017076;purine nucleotide binding;1.39680107039594e-15!GO:0005694;chromosome;1.48418062920667e-15!GO:0005794;Golgi apparatus;1.91557890462233e-15!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);2.84529301724332e-15!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;2.85685912795125e-15!GO:0008134;transcription factor binding;6.98953239532857e-15!GO:0009057;macromolecule catabolic process;9.81799497308942e-15!GO:0030163;protein catabolic process;1.25616047126419e-14!GO:0006605;protein targeting;1.45965722109961e-14!GO:0042254;ribosome biogenesis and assembly;1.71984834014932e-14!GO:0048193;Golgi vesicle transport;2.05810294291935e-14!GO:0044427;chromosomal part;2.29294628950719e-14!GO:0051082;unfolded protein binding;2.80580219847716e-14!GO:0050136;NADH dehydrogenase (quinone) activity;3.25821048692545e-14!GO:0003954;NADH dehydrogenase activity;3.25821048692545e-14!GO:0008137;NADH dehydrogenase (ubiquinone) activity;3.25821048692545e-14!GO:0051301;cell division;4.30221304778688e-14!GO:0044248;cellular catabolic process;4.8648027496053e-14!GO:0006732;coenzyme metabolic process;7.05049840766396e-14!GO:0042175;nuclear envelope-endoplasmic reticulum network;1.37987511620838e-13!GO:0009719;response to endogenous stimulus;1.78325411583972e-13!GO:0006281;DNA repair;1.89353108841421e-13!GO:0000398;nuclear mRNA splicing, via spliceosome;2.04707849561953e-13!GO:0000375;RNA splicing, via transesterification reactions;2.04707849561953e-13!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;2.04707849561953e-13!GO:0005635;nuclear envelope;2.50120926710671e-13!GO:0003743;translation initiation factor activity;2.77229106162694e-13!GO:0005524;ATP binding;3.14158086161218e-13!GO:0000279;M phase;3.24852857286735e-13!GO:0032559;adenyl ribonucleotide binding;3.6475440874368e-13!GO:0005789;endoplasmic reticulum membrane;4.93717042240014e-13!GO:0016070;RNA metabolic process;5.11442942340864e-13!GO:0031965;nuclear membrane;9.39804099163023e-13!GO:0042775;organelle ATP synthesis coupled electron transport;1.0352908240793e-12!GO:0042773;ATP synthesis coupled electron transport;1.0352908240793e-12!GO:0030554;adenyl nucleotide binding;1.28916148768903e-12!GO:0044453;nuclear membrane part;1.54552608286493e-12!GO:0006260;DNA replication;2.2268928182883e-12!GO:0030964;NADH dehydrogenase complex (quinone);2.30375156198739e-12!GO:0045271;respiratory chain complex I;2.30375156198739e-12!GO:0005747;mitochondrial respiratory chain complex I;2.30375156198739e-12!GO:0016192;vesicle-mediated transport;4.13297252609565e-12!GO:0009055;electron carrier activity;4.31604643971033e-12!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;4.35245226935439e-12!GO:0006413;translational initiation;4.79774760920292e-12!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;6.05920519560919e-12!GO:0000074;regulation of progression through cell cycle;7.26137743011992e-12!GO:0051726;regulation of cell cycle;8.12383160291313e-12!GO:0012501;programmed cell death;1.56517739288213e-11!GO:0051276;chromosome organization and biogenesis;1.61203979990857e-11!GO:0005793;ER-Golgi intermediate compartment;1.90468086877448e-11!GO:0006915;apoptosis;2.626886716796e-11!GO:0042623;ATPase activity, coupled;3.20519828029435e-11!GO:0043412;biopolymer modification;3.60106640853629e-11!GO:0016887;ATPase activity;3.93920699599939e-11!GO:0009259;ribonucleotide metabolic process;1.54225736032294e-10!GO:0016604;nuclear body;1.72707516585009e-10!GO:0006399;tRNA metabolic process;1.9489799785726e-10!GO:0006913;nucleocytoplasmic transport;2.02273941101679e-10!GO:0065002;intracellular protein transport across a membrane;3.02614056934228e-10!GO:0065004;protein-DNA complex assembly;3.58526939953473e-10!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;3.90345721920717e-10!GO:0008219;cell death;3.98675146939516e-10!GO:0016265;death;3.98675146939516e-10!GO:0006464;protein modification process;4.47231767421559e-10!GO:0006446;regulation of translational initiation;4.57089429114343e-10!GO:0051169;nuclear transport;4.60647092503934e-10!GO:0006163;purine nucleotide metabolic process;5.01248556004246e-10!GO:0005643;nuclear pore;5.1874057611462e-10!GO:0003712;transcription cofactor activity;6.77791255494617e-10!GO:0008565;protein transporter activity;9.40741057449333e-10!GO:0009150;purine ribonucleotide metabolic process;1.28874156366798e-09!GO:0006461;protein complex assembly;1.50082294666972e-09!GO:0006364;rRNA processing;1.6427020597708e-09!GO:0009260;ribonucleotide biosynthetic process;1.71943754118232e-09!GO:0006164;purine nucleotide biosynthetic process;2.1483394746745e-09!GO:0006325;establishment and/or maintenance of chromatin architecture;2.206546261857e-09!GO:0048523;negative regulation of cellular process;2.22452602032313e-09!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;3.25468751670829e-09!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;3.8658151695799e-09!GO:0016879;ligase activity, forming carbon-nitrogen bonds;3.9017443779883e-09!GO:0016072;rRNA metabolic process;4.05102267544336e-09!GO:0009199;ribonucleoside triphosphate metabolic process;4.70603931958728e-09!GO:0008639;small protein conjugating enzyme activity;4.82700448856786e-09!GO:0009152;purine ribonucleotide biosynthetic process;5.31618282308827e-09!GO:0004386;helicase activity;6.6100734355288e-09!GO:0006323;DNA packaging;6.63770551086938e-09!GO:0005788;endoplasmic reticulum lumen;6.72164828989789e-09!GO:0019787;small conjugating protein ligase activity;6.92570465046274e-09!GO:0009141;nucleoside triphosphate metabolic process;6.97049123329989e-09!GO:0009060;aerobic respiration;7.06999145924786e-09!GO:0006888;ER to Golgi vesicle-mediated transport;7.42427739219648e-09!GO:0043687;post-translational protein modification;9.21985683615582e-09!GO:0004842;ubiquitin-protein ligase activity;9.4374236329423e-09!GO:0009205;purine ribonucleoside triphosphate metabolic process;9.60119325316171e-09!GO:0009144;purine nucleoside triphosphate metabolic process;9.60119325316171e-09!GO:0008026;ATP-dependent helicase activity;1.07051030182241e-08!GO:0050657;nucleic acid transport;1.35458111530728e-08!GO:0051236;establishment of RNA localization;1.35458111530728e-08!GO:0050658;RNA transport;1.35458111530728e-08!GO:0051188;cofactor biosynthetic process;1.35708199505672e-08!GO:0015630;microtubule cytoskeleton;1.47880856428739e-08!GO:0009056;catabolic process;1.52075269690466e-08!GO:0006403;RNA localization;1.52075269690466e-08!GO:0009142;nucleoside triphosphate biosynthetic process;1.62105358926105e-08!GO:0009201;ribonucleoside triphosphate biosynthetic process;1.62105358926105e-08!GO:0046930;pore complex;1.67169770510301e-08!GO:0015986;ATP synthesis coupled proton transport;1.70022211739703e-08!GO:0015985;energy coupled proton transport, down electrochemical gradient;1.70022211739703e-08!GO:0000785;chromatin;2.01847561717706e-08!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;2.01847561717706e-08!GO:0004812;aminoacyl-tRNA ligase activity;2.01847561717706e-08!GO:0016875;ligase activity, forming carbon-oxygen bonds;2.01847561717706e-08!GO:0006333;chromatin assembly or disassembly;2.5791394716741e-08!GO:0045333;cellular respiration;2.587494933894e-08!GO:0016607;nuclear speck;3.10145199671327e-08!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;3.35223590230656e-08!GO:0009145;purine nucleoside triphosphate biosynthetic process;3.35223590230656e-08!GO:0043038;amino acid activation;3.42079428303342e-08!GO:0006418;tRNA aminoacylation for protein translation;3.42079428303342e-08!GO:0043039;tRNA aminoacylation;3.42079428303342e-08!GO:0016491;oxidoreductase activity;3.42079428303342e-08!GO:0019829;cation-transporting ATPase activity;3.43584842912143e-08!GO:0030532;small nuclear ribonucleoprotein complex;4.65745398921631e-08!GO:0016881;acid-amino acid ligase activity;5.63277320634571e-08!GO:0017038;protein import;6.79917378153875e-08!GO:0005839;proteasome core complex (sensu Eukaryota);7.1110332389565e-08!GO:0006334;nucleosome assembly;8.03306932865492e-08!GO:0009117;nucleotide metabolic process;8.64270587142717e-08!GO:0046034;ATP metabolic process;8.89859444415599e-08!GO:0048519;negative regulation of biological process;1.01292332295026e-07!GO:0051246;regulation of protein metabolic process;1.13569061557997e-07!GO:0051187;cofactor catabolic process;1.1717650600349e-07!GO:0006099;tricarboxylic acid cycle;1.20987161475885e-07!GO:0046356;acetyl-CoA catabolic process;1.20987161475885e-07!GO:0003924;GTPase activity;1.39959325852496e-07!GO:0003697;single-stranded DNA binding;1.42293563139372e-07!GO:0007005;mitochondrion organization and biogenesis;1.54053431950256e-07!GO:0043067;regulation of programmed cell death;1.54053431950256e-07!GO:0015078;hydrogen ion transmembrane transporter activity;1.58361895409277e-07!GO:0030120;vesicle coat;1.63806286846073e-07!GO:0030662;coated vesicle membrane;1.63806286846073e-07!GO:0042981;regulation of apoptosis;1.71814745097529e-07!GO:0009109;coenzyme catabolic process;2.37386515850576e-07!GO:0006366;transcription from RNA polymerase II promoter;2.38341908626578e-07!GO:0006754;ATP biosynthetic process;2.70240177392672e-07!GO:0006753;nucleoside phosphate metabolic process;2.70240177392672e-07!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;2.88041653455185e-07!GO:0005768;endosome;3.40269059570959e-07!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;3.55867206147041e-07!GO:0006084;acetyl-CoA metabolic process;3.65934858997459e-07!GO:0009108;coenzyme biosynthetic process;4.10510603762618e-07!GO:0005819;spindle;5.26565051159506e-07!GO:0031497;chromatin assembly;5.39183452842769e-07!GO:0004298;threonine endopeptidase activity;6.09863673709928e-07!GO:0051028;mRNA transport;6.18733748988667e-07!GO:0016469;proton-transporting two-sector ATPase complex;6.37185365394159e-07!GO:0016023;cytoplasmic membrane-bound vesicle;6.38827503475929e-07!GO:0031988;membrane-bound vesicle;6.8148124234191e-07!GO:0043566;structure-specific DNA binding;7.76595906738824e-07!GO:0016853;isomerase activity;8.91936985501748e-07!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;9.17520282980556e-07!GO:0043069;negative regulation of programmed cell death;9.48197489908048e-07!GO:0005667;transcription factor complex;1.14533530169566e-06!GO:0048475;coated membrane;1.22667690501379e-06!GO:0030117;membrane coat;1.22667690501379e-06!GO:0045454;cell redox homeostasis;1.45137436064876e-06!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;1.61258570414407e-06!GO:0044431;Golgi apparatus part;1.63864291307149e-06!GO:0043066;negative regulation of apoptosis;1.78723614944342e-06!GO:0050794;regulation of cellular process;2.1725977526203e-06!GO:0007051;spindle organization and biogenesis;2.21902200879894e-06!GO:0000775;chromosome, pericentric region;2.45883044098463e-06!GO:0045259;proton-transporting ATP synthase complex;2.52883225047692e-06!GO:0000245;spliceosome assembly;3.24423091981136e-06!GO:0031982;vesicle;3.56424464675658e-06!GO:0006752;group transfer coenzyme metabolic process;3.61122580823981e-06!GO:0043623;cellular protein complex assembly;3.76258685003653e-06!GO:0032446;protein modification by small protein conjugation;4.16359137316559e-06!GO:0006613;cotranslational protein targeting to membrane;4.45497378350466e-06!GO:0016787;hydrolase activity;4.79794501667639e-06!GO:0051329;interphase of mitotic cell cycle;4.82006365302844e-06!GO:0031410;cytoplasmic vesicle;4.82006365302844e-06!GO:0016779;nucleotidyltransferase activity;4.8823588016413e-06!GO:0016567;protein ubiquitination;5.0286142193502e-06!GO:0006916;anti-apoptosis;5.09094968189808e-06!GO:0005798;Golgi-associated vesicle;5.58498623326839e-06!GO:0005770;late endosome;6.35933633902354e-06!GO:0045786;negative regulation of progression through cell cycle;7.22315509382832e-06!GO:0051325;interphase;7.33198272636801e-06!GO:0031202;RNA splicing factor activity, transesterification mechanism;7.6531124902279e-06!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;8.98378520543232e-06!GO:0007249;I-kappaB kinase/NF-kappaB cascade;9.16475404320118e-06!GO:0016859;cis-trans isomerase activity;1.11438812338801e-05!GO:0051170;nuclear import;1.26949936105421e-05!GO:0005773;vacuole;1.35802251844303e-05!GO:0003724;RNA helicase activity;1.491951070863e-05!GO:0000151;ubiquitin ligase complex;1.77133785791263e-05!GO:0003714;transcription corepressor activity;1.85630805026696e-05!GO:0015077;monovalent inorganic cation transmembrane transporter activity;1.9086670582753e-05!GO:0005762;mitochondrial large ribosomal subunit;1.90888628058078e-05!GO:0000315;organellar large ribosomal subunit;1.90888628058078e-05!GO:0016740;transferase activity;1.93504302945488e-05!GO:0005813;centrosome;2.08369866168759e-05!GO:0005525;GTP binding;2.28167882971545e-05!GO:0006091;generation of precursor metabolites and energy;2.63862890181299e-05!GO:0030867;rough endoplasmic reticulum membrane;2.66118291533528e-05!GO:0031252;leading edge;2.8122822556321e-05!GO:0008654;phospholipid biosynthetic process;3.25284640280647e-05!GO:0006261;DNA-dependent DNA replication;3.31765830510516e-05!GO:0005815;microtubule organizing center;3.59366907347439e-05!GO:0016310;phosphorylation;3.64809540391191e-05!GO:0006606;protein import into nucleus;3.68929835994382e-05!GO:0003899;DNA-directed RNA polymerase activity;3.76585008635875e-05!GO:0019867;outer membrane;3.96130096159937e-05!GO:0031968;organelle outer membrane;4.04168669430057e-05!GO:0000314;organellar small ribosomal subunit;4.18360534155174e-05!GO:0005763;mitochondrial small ribosomal subunit;4.18360534155174e-05!GO:0000075;cell cycle checkpoint;4.38480340627664e-05!GO:0006612;protein targeting to membrane;4.59336571486729e-05!GO:0008361;regulation of cell size;4.62518252134888e-05!GO:0044440;endosomal part;5.02671017017521e-05!GO:0010008;endosome membrane;5.02671017017521e-05!GO:0003713;transcription coactivator activity;5.28358438624618e-05!GO:0006793;phosphorus metabolic process;5.76612843242839e-05!GO:0006796;phosphate metabolic process;5.76612843242839e-05!GO:0043021;ribonucleoprotein binding;6.38328419673698e-05!GO:0016049;cell growth;6.40760132527559e-05!GO:0007010;cytoskeleton organization and biogenesis;6.50770958928098e-05!GO:0019843;rRNA binding;6.68077533241395e-05!GO:0031324;negative regulation of cellular metabolic process;7.80689234382251e-05!GO:0000323;lytic vacuole;7.92691742067745e-05!GO:0005764;lysosome;7.92691742067745e-05!GO:0051789;response to protein stimulus;8.08527097479022e-05!GO:0006986;response to unfolded protein;8.08527097479022e-05!GO:0000139;Golgi membrane;8.63185148288078e-05!GO:0015980;energy derivation by oxidation of organic compounds;8.64506999278765e-05!GO:0016568;chromatin modification;9.44209555635091e-05!GO:0005791;rough endoplasmic reticulum;9.67006147194592e-05!GO:0032561;guanyl ribonucleotide binding;0.000106498032667735!GO:0019001;guanyl nucleotide binding;0.000106498032667735!GO:0005769;early endosome;0.000113005352163365!GO:0005657;replication fork;0.000128215764639592!GO:0001558;regulation of cell growth;0.000129815328875745!GO:0006626;protein targeting to mitochondrion;0.000145368108797293!GO:0016564;transcription repressor activity;0.000152639886435058!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.000156578071573099!GO:0051427;hormone receptor binding;0.0001628791165142!GO:0033116;ER-Golgi intermediate compartment membrane;0.000172371735232961!GO:0016563;transcription activator activity;0.000172722195575854!GO:0050789;regulation of biological process;0.00019128933409599!GO:0005741;mitochondrial outer membrane;0.000207135425678039!GO:0005905;coated pit;0.000211207051702826!GO:0006414;translational elongation;0.000215349587012888!GO:0051168;nuclear export;0.000234670570229264!GO:0030133;transport vesicle;0.00024054637739083!GO:0048522;positive regulation of cellular process;0.000242860128319915!GO:0005048;signal sequence binding;0.000249291081629982!GO:0000786;nucleosome;0.000254677559616773!GO:0006950;response to stress;0.00030668954086929!GO:0016772;transferase activity, transferring phosphorus-containing groups;0.000307644648279675!GO:0030663;COPI coated vesicle membrane;0.000313066468168661!GO:0030126;COPI vesicle coat;0.000313066468168661!GO:0035257;nuclear hormone receptor binding;0.000330043824889005!GO:0008186;RNA-dependent ATPase activity;0.000339172224378102!GO:0005885;Arp2/3 protein complex;0.000340318512460112!GO:0008094;DNA-dependent ATPase activity;0.000345564215584296!GO:0008250;oligosaccharyl transferase complex;0.000345564215584296!GO:0009892;negative regulation of metabolic process;0.000365671075507658!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.000365671075507658!GO:0009165;nucleotide biosynthetic process;0.000371090752378109!GO:0000776;kinetochore;0.000371090752378109!GO:0004576;oligosaccharyl transferase activity;0.000412576119443317!GO:0043681;protein import into mitochondrion;0.000452417246097673!GO:0006839;mitochondrial transport;0.000479136949764272!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.000484026685497529!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.000503453243538121!GO:0016363;nuclear matrix;0.000504108175328373!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;0.000572583199551128!GO:0000082;G1/S transition of mitotic cell cycle;0.000583341007630007!GO:0044452;nucleolar part;0.000643681823547586!GO:0000079;regulation of cyclin-dependent protein kinase activity;0.000692245269420958!GO:0018196;peptidyl-asparagine modification;0.000708532458539593!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.000708532458539593!GO:0043284;biopolymer biosynthetic process;0.000729313865291008!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.000780150971557752!GO:0051052;regulation of DNA metabolic process;0.000785306680341258!GO:0007088;regulation of mitosis;0.0007989098601561!GO:0030137;COPI-coated vesicle;0.000820604347507353!GO:0051920;peroxiredoxin activity;0.000831298722818093!GO:0030176;integral to endoplasmic reticulum membrane;0.000859488193049675!GO:0004004;ATP-dependent RNA helicase activity;0.000914745261252587!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.000918792358323331!GO:0015399;primary active transmembrane transporter activity;0.000918792358323331!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.000932094475672147!GO:0008033;tRNA processing;0.000942779461943437!GO:0006302;double-strand break repair;0.00100628338889481!GO:0006891;intra-Golgi vesicle-mediated transport;0.001016662368467!GO:0046483;heterocycle metabolic process;0.00103369196932829!GO:0000059;protein import into nucleus, docking;0.00109196882950214!GO:0019752;carboxylic acid metabolic process;0.00114554284681521!GO:0006383;transcription from RNA polymerase III promoter;0.00114898693115082!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.00120888739561082!GO:0006082;organic acid metabolic process;0.00123218463444543!GO:0030880;RNA polymerase complex;0.00124559656877396!GO:0046474;glycerophospholipid biosynthetic process;0.00131177628150946!GO:0005874;microtubule;0.00139099532767037!GO:0042802;identical protein binding;0.00144591338108639!GO:0000226;microtubule cytoskeleton organization and biogenesis;0.00150510970122102!GO:0048500;signal recognition particle;0.00154633266742465!GO:0005852;eukaryotic translation initiation factor 3 complex;0.00154633266742465!GO:0003690;double-stranded DNA binding;0.00156307682951646!GO:0007052;mitotic spindle organization and biogenesis;0.00163342205173054!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.0016448504984322!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.0016448504984322!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.0016448504984322!GO:0031072;heat shock protein binding;0.00178029784666207!GO:0016281;eukaryotic translation initiation factor 4F complex;0.00178900849802881!GO:0003684;damaged DNA binding;0.00191686305144553!GO:0048487;beta-tubulin binding;0.00202523349719202!GO:0007093;mitotic cell cycle checkpoint;0.00204103733186293!GO:0051252;regulation of RNA metabolic process;0.00217752051158915!GO:0015631;tubulin binding;0.00218380974845033!GO:0030036;actin cytoskeleton organization and biogenesis;0.00220565316392563!GO:0051087;chaperone binding;0.00230724547558076!GO:0006402;mRNA catabolic process;0.00235322279077079!GO:0003729;mRNA binding;0.0023858915702449!GO:0048471;perinuclear region of cytoplasm;0.00242580765411975!GO:0046489;phosphoinositide biosynthetic process;0.00256936898222326!GO:0007243;protein kinase cascade;0.00265803487739056!GO:0008312;7S RNA binding;0.00283449788299321!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.00283449788299321!GO:0000428;DNA-directed RNA polymerase complex;0.00283449788299321!GO:0008180;signalosome;0.00283534269318632!GO:0003678;DNA helicase activity;0.00285923555212491!GO:0006979;response to oxidative stress;0.00292332725878467!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.00294393105764636!GO:0015992;proton transport;0.00298026449016941!GO:0005684;U2-dependent spliceosome;0.00305998981217814!GO:0006357;regulation of transcription from RNA polymerase II promoter;0.00306498559995761!GO:0019899;enzyme binding;0.00320338259521446!GO:0030659;cytoplasmic vesicle membrane;0.00331403514891551!GO:0008632;apoptotic program;0.00331496590193293!GO:0051045;negative regulation of membrane protein ectodomain proteolysis;0.00336055331865622!GO:0051043;regulation of membrane protein ectodomain proteolysis;0.00336055331865622!GO:0000049;tRNA binding;0.0035220990862649!GO:0006818;hydrogen transport;0.00354612442635208!GO:0007006;mitochondrial membrane organization and biogenesis;0.00357993341836474!GO:0009112;nucleobase metabolic process;0.00359245538345591!GO:0043488;regulation of mRNA stability;0.00366986452789176!GO:0043487;regulation of RNA stability;0.00366986452789176!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.00367307675960938!GO:0045047;protein targeting to ER;0.00367307675960938!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.00371056432391009!GO:0044262;cellular carbohydrate metabolic process;0.0037119678188954!GO:0007059;chromosome segregation;0.0040054309334805!GO:0030134;ER to Golgi transport vesicle;0.0040054309334805!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.00412472483237912!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.00412472483237912!GO:0006352;transcription initiation;0.0041635811863878!GO:0016481;negative regulation of transcription;0.00423622863704665!GO:0030027;lamellipodium;0.00452491769856297!GO:0030521;androgen receptor signaling pathway;0.00452491769856297!GO:0016251;general RNA polymerase II transcription factor activity;0.00472714874868719!GO:0008168;methyltransferase activity;0.00476938784112244!GO:0030132;clathrin coat of coated pit;0.00476938784112244!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.00493825395095413!GO:0048518;positive regulation of biological process;0.00499954261495312!GO:0005581;collagen;0.0051070441930056!GO:0016741;transferase activity, transferring one-carbon groups;0.0051070441930056!GO:0006401;RNA catabolic process;0.00517834959183817!GO:0000096;sulfur amino acid metabolic process;0.00517834959183817!GO:0006520;amino acid metabolic process;0.00518736818103131!GO:0007017;microtubule-based process;0.00521187106274406!GO:0009116;nucleoside metabolic process;0.00549917060512763!GO:0004177;aminopeptidase activity;0.00552660765677372!GO:0007050;cell cycle arrest;0.00569042090125226!GO:0051287;NAD binding;0.00592827542692315!GO:0035258;steroid hormone receptor binding;0.00628118909379916!GO:0030658;transport vesicle membrane;0.00640038424841012!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.00682918388550274!GO:0015002;heme-copper terminal oxidase activity;0.00682918388550274!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.00682918388550274!GO:0004129;cytochrome-c oxidase activity;0.00682918388550274!GO:0005876;spindle microtubule;0.00694285830745496!GO:0005637;nuclear inner membrane;0.00694285830745496!GO:0051128;regulation of cellular component organization and biogenesis;0.00695605856920923!GO:0004527;exonuclease activity;0.00695605856920923!GO:0009967;positive regulation of signal transduction;0.00708037624460762!GO:0003746;translation elongation factor activity;0.00708037624460762!GO:0045045;secretory pathway;0.00709438780070004!GO:0006595;polyamine metabolic process;0.00741984830647206!GO:0003682;chromatin binding;0.00741984830647206!GO:0065009;regulation of a molecular function;0.00743330881074019!GO:0017166;vinculin binding;0.00767474323788298!GO:0040008;regulation of growth;0.00777682482141547!GO:0044433;cytoplasmic vesicle part;0.00783786955561271!GO:0016197;endosome transport;0.00814497584833312!GO:0022890;inorganic cation transmembrane transporter activity;0.00822314723432928!GO:0043492;ATPase activity, coupled to movement of substances;0.00823120827566658!GO:0030127;COPII vesicle coat;0.00845494495985195!GO:0012507;ER to Golgi transport vesicle membrane;0.00845494495985195!GO:0006740;NADPH regeneration;0.00856375763757453!GO:0006098;pentose-phosphate shunt;0.00856375763757453!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.00861386613292766!GO:0016706;oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors;0.00862824608537427!GO:0008047;enzyme activator activity;0.00868016290795936!GO:0046467;membrane lipid biosynthetic process;0.00880263815208136!GO:0032508;DNA duplex unwinding;0.00897083457398381!GO:0032392;DNA geometric change;0.00897083457398381!GO:0031902;late endosome membrane;0.00898088769687163!GO:0006984;ER-nuclear signaling pathway;0.00919807899453931!GO:0006310;DNA recombination;0.00927126083872983!GO:0032984;macromolecular complex disassembly;0.00945634158916997!GO:0005869;dynactin complex;0.00945946121957302!GO:0006275;regulation of DNA replication;0.00945946121957302!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.00966945964433991!GO:0019798;procollagen-proline dioxygenase activity;0.0096922525531674!GO:0005862;muscle thin filament tropomyosin;0.0096922525531674!GO:0000339;RNA cap binding;0.00969398296905685!GO:0008139;nuclear localization sequence binding;0.00969858948752062!GO:0003711;transcription elongation regulator activity;0.00980219176053654!GO:0016044;membrane organization and biogenesis;0.00985772135703502!GO:0045792;negative regulation of cell size;0.00995451301318445!GO:0031543;peptidyl-proline dioxygenase activity;0.0100715658253599!GO:0043022;ribosome binding;0.0102464538827529!GO:0030029;actin filament-based process;0.0104951018027778!GO:0006405;RNA export from nucleus;0.0106883928849063!GO:0016667;oxidoreductase activity, acting on sulfur group of donors;0.0106883928849063!GO:0000307;cyclin-dependent protein kinase holoenzyme complex;0.0106883928849063!GO:0007040;lysosome organization and biogenesis;0.010727330014664!GO:0016272;prefoldin complex;0.0110586123566982!GO:0031124;mRNA 3'-end processing;0.0113834860638815!GO:0012506;vesicle membrane;0.0114520721598633!GO:0005832;chaperonin-containing T-complex;0.0117570263552462!GO:0048468;cell development;0.0118220112301643!GO:0043624;cellular protein complex disassembly;0.0122091973253513!GO:0030308;negative regulation of cell growth;0.0124500461774171!GO:0003756;protein disulfide isomerase activity;0.0126876153754183!GO:0016864;intramolecular oxidoreductase activity, transposing S-S bonds;0.0126876153754183!GO:0019222;regulation of metabolic process;0.0127048333129332!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.0127725413974278!GO:0016860;intramolecular oxidoreductase activity;0.0128855082419101!GO:0006650;glycerophospholipid metabolic process;0.0134319671893!GO:0005669;transcription factor TFIID complex;0.0135479115824683!GO:0001726;ruffle;0.0136488614116854!GO:0006611;protein export from nucleus;0.0136887988671693!GO:0006509;membrane protein ectodomain proteolysis;0.014017527382685!GO:0033619;membrane protein proteolysis;0.014017527382685!GO:0007033;vacuole organization and biogenesis;0.0141534751999741!GO:0008652;amino acid biosynthetic process;0.014240270660895!GO:0031418;L-ascorbic acid binding;0.0144371970134507!GO:0016627;oxidoreductase activity, acting on the CH-CH group of donors;0.0145088392585798!GO:0006144;purine base metabolic process;0.0146886016326807!GO:0030518;steroid hormone receptor signaling pathway;0.0148637372333073!GO:0030118;clathrin coat;0.015004314507676!GO:0030503;regulation of cell redox homeostasis;0.0151028214543089!GO:0043241;protein complex disassembly;0.0152063079087249!GO:0008320;protein transmembrane transporter activity;0.0152413428389176!GO:0051540;metal cluster binding;0.0152499611096018!GO:0051536;iron-sulfur cluster binding;0.0152499611096018!GO:0006497;protein amino acid lipidation;0.0153995788648811!GO:0051539;4 iron, 4 sulfur cluster binding;0.0154515387839901!GO:0030660;Golgi-associated vesicle membrane;0.0160589817793888!GO:0042770;DNA damage response, signal transduction;0.0161449229288229!GO:0000287;magnesium ion binding;0.0161449229288229!GO:0008610;lipid biosynthetic process;0.0168936352737861!GO:0016408;C-acyltransferase activity;0.0170230608217546!GO:0006790;sulfur metabolic process;0.0171228086605596!GO:0006268;DNA unwinding during replication;0.0171944545395276!GO:0022408;negative regulation of cell-cell adhesion;0.0173708468354001!GO:0043065;positive regulation of apoptosis;0.0174122027747389!GO:0006220;pyrimidine nucleotide metabolic process;0.0175745532438393!GO:0004003;ATP-dependent DNA helicase activity;0.0176276855594436!GO:0008022;protein C-terminus binding;0.0180252187247208!GO:0050811;GABA receptor binding;0.0180771761371627!GO:0047485;protein N-terminus binding;0.0181748229777297!GO:0050681;androgen receptor binding;0.0182745071691951!GO:0016126;sterol biosynthetic process;0.019145162976687!GO:0030145;manganese ion binding;0.0196756731259792!GO:0005758;mitochondrial intermembrane space;0.0196756731259792!GO:0043068;positive regulation of programmed cell death;0.0205040231257559!GO:0006749;glutathione metabolic process;0.0207758667542432!GO:0065007;biological regulation;0.0213225618898037!GO:0008538;proteasome activator activity;0.0219381251513238!GO:0007021;tubulin folding;0.022066107286766!GO:0000922;spindle pole;0.0222649429931009!GO:0016584;nucleosome positioning;0.0224852872913368!GO:0030041;actin filament polymerization;0.0225043121497441!GO:0006739;NADP metabolic process;0.0226762189328011!GO:0006778;porphyrin metabolic process;0.0227625532228662!GO:0033013;tetrapyrrole metabolic process;0.0227625532228662!GO:0007264;small GTPase mediated signal transduction;0.023653266989714!GO:0008637;apoptotic mitochondrial changes;0.023718294941108!GO:0004674;protein serine/threonine kinase activity;0.023724860460738!GO:0043433;negative regulation of transcription factor activity;0.0237289192012747!GO:0006289;nucleotide-excision repair;0.0238047046547566!GO:0042393;histone binding;0.023815785390944!GO:0005665;DNA-directed RNA polymerase II, core complex;0.0242577721007309!GO:0050662;coenzyme binding;0.0243907510313046!GO:0006506;GPI anchor biosynthetic process;0.024572221293146!GO:0008243;plasminogen activator activity;0.0256767587629591!GO:0005774;vacuolar membrane;0.0264128947558025!GO:0000209;protein polyubiquitination;0.0266124474609153!GO:0007034;vacuolar transport;0.0268399638557295!GO:0031529;ruffle organization and biogenesis;0.0277629341211531!GO:0005586;collagen type III;0.0278655169967816!GO:0045935;positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.0285399467854289!GO:0022406;membrane docking;0.0294557993547864!GO:0048278;vesicle docking;0.0294557993547864!GO:0016780;phosphotransferase activity, for other substituted phosphate groups;0.0296439687921836!GO:0008629;induction of apoptosis by intracellular signals;0.0296503422878576!GO:0030032;lamellipodium biogenesis;0.0296978573012358!GO:0043161;proteasomal ubiquitin-dependent protein catabolic process;0.0297060389763936!GO:0000178;exosome (RNase complex);0.0297060389763936!GO:0033673;negative regulation of kinase activity;0.0299586713806977!GO:0006469;negative regulation of protein kinase activity;0.0299586713806977!GO:0030496;midbody;0.0299894398883775!GO:0042168;heme metabolic process;0.0299894398883775!GO:0031901;early endosome membrane;0.0301236540591671!GO:0022411;cellular component disassembly;0.03060357647101!GO:0006376;mRNA splice site selection;0.0307215781203916!GO:0000389;nuclear mRNA 3'-splice site recognition;0.0307215781203916!GO:0030833;regulation of actin filament polymerization;0.0307409232661275!GO:0030508;thiol-disulfide exchange intermediate activity;0.0307472094077183!GO:0006118;electron transport;0.0311782550746518!GO:0030384;phosphoinositide metabolic process;0.0311782550746518!GO:0019205;nucleobase, nucleoside, nucleotide kinase activity;0.0318499395185308!GO:0030330;DNA damage response, signal transduction by p53 class mediator;0.0322593813124852!GO:0005784;translocon complex;0.032306966318939!GO:0051348;negative regulation of transferase activity;0.0343160256685355!GO:0006505;GPI anchor metabolic process;0.0343160256685355!GO:0043596;nuclear replication fork;0.0343473572877733!GO:0030433;ER-associated protein catabolic process;0.0343473572877733!GO:0006515;misfolded or incompletely synthesized protein catabolic process;0.0343473572877733!GO:0006354;RNA elongation;0.0344203719092082!GO:0019206;nucleoside kinase activity;0.0350611117046152!GO:0006904;vesicle docking during exocytosis;0.0351295228283932!GO:0000910;cytokinesis;0.0354215164678405!GO:0006368;RNA elongation from RNA polymerase II promoter;0.0355932707188786!GO:0031371;ubiquitin conjugating enzyme complex;0.0356315271141285!GO:0051101;regulation of DNA binding;0.0357950972621569!GO:0006007;glucose catabolic process;0.0359983501157139!GO:0006458;'de novo' protein folding;0.036263405672625!GO:0051084;'de novo' posttranslational protein folding;0.036263405672625!GO:0051098;regulation of binding;0.036263405672625!GO:0030119;AP-type membrane coat adaptor complex;0.0362906083086783!GO:0042158;lipoprotein biosynthetic process;0.0366132512342794!GO:0006892;post-Golgi vesicle-mediated transport;0.037013268753403!GO:0045941;positive regulation of transcription;0.0372617817634795!GO:0015036;disulfide oxidoreductase activity;0.0373939505342517!GO:0009303;rRNA transcription;0.0376461606370099!GO:0005096;GTPase activator activity;0.0380201202144749!GO:0008154;actin polymerization and/or depolymerization;0.0380536543792227!GO:0007569;cell aging;0.0386231318264071!GO:0046426;negative regulation of JAK-STAT cascade;0.0386231318264071!GO:0031123;RNA 3'-end processing;0.0400025306735659!GO:0035035;histone acetyltransferase binding;0.040578456237482!GO:0043130;ubiquitin binding;0.0418106191332356!GO:0032182;small conjugating protein binding;0.0418106191332356!GO:0003923;GPI-anchor transamidase activity;0.0421300666219034!GO:0016255;attachment of GPI anchor to protein;0.0421300666219034!GO:0042765;GPI-anchor transamidase complex;0.0421300666219034!GO:0030125;clathrin vesicle coat;0.0421966211377332!GO:0030665;clathrin coated vesicle membrane;0.0421966211377332!GO:0045893;positive regulation of transcription, DNA-dependent;0.042943795593897!GO:0006769;nicotinamide metabolic process;0.0431592599429096!GO:0008092;cytoskeletal protein binding;0.0432141708894466!GO:0031970;organelle envelope lumen;0.0432970888488005!GO:0017015;regulation of transforming growth factor beta receptor signaling pathway;0.0432970888488005!GO:0008234;cysteine-type peptidase activity;0.0433542787978575!GO:0006807;nitrogen compound metabolic process;0.043499414918653!GO:0031227;intrinsic to endoplasmic reticulum membrane;0.0436176703942082!GO:0006417;regulation of translation;0.0444921037842148!GO:0008097;5S rRNA binding;0.0450569995209224!GO:0006733;oxidoreduction coenzyme metabolic process;0.0451755181440291!GO:0045936;negative regulation of phosphate metabolic process;0.0452458231143668!GO:0030911;TPR domain binding;0.0453884997363538!GO:0006564;L-serine biosynthetic process;0.0455324913522134!GO:0000097;sulfur amino acid biosynthetic process;0.046427423287941!GO:0031625;ubiquitin protein ligase binding;0.0469624884166076!GO:0048037;cofactor binding;0.0474006089582472!GO:0031570;DNA integrity checkpoint;0.0474035952336079!GO:0016616;oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor;0.0475803170731186!GO:0051270;regulation of cell motility;0.0475803170731186!GO:0005583;fibrillar collagen;0.0480768760417293!GO:0032940;secretion by cell;0.0486842087124197!GO:0000152;nuclear ubiquitin ligase complex;0.0488257089446817!GO:0006378;mRNA polyadenylation;0.0489076927987392!GO:0005801;cis-Golgi network;0.0492954582144941!GO:0003702;RNA polymerase II transcription factor activity;0.0496132725589005 | |||
|sample_id=11254 | |sample_id=11254 | ||
|sample_note= | |sample_note= | ||
| Line 76: | Line 105: | ||
|sample_tissue=prostate | |sample_tissue=prostate | ||
|top_motifs=TAL1_TCF{3,4,12}:1.95175010535;HSF1,2:1.83013764171;EN1,2:1.64342113655;MYBL2:1.57423525319;NKX2-2,8:1.27702301472;ALX4:1.27463564751;HES1:1.14777959286;ZNF238:1.09224137312;YY1:1.06769288396;PAX1,9:0.944557587056;NFE2L1:0.920873263019;KLF4:0.919006495536;UFEwm:0.917069737548;LHX3,4:0.871136635245;MYB:0.859067112888;ESR1:0.81375851635;GLI1..3:0.80686909408;TEAD1:0.801461653947;GTF2A1,2:0.78061024975;TBP:0.766658253418;TLX2:0.735946359447;TBX4,5:0.724507091004;TFAP4:0.697561361242;FOXL1:0.691762317194;NKX3-1:0.67828010503;HOX{A5,B5}:0.669825073904;POU5F1:0.660615574453;FOXD3:0.650138756761;GFI1:0.646837895527;E2F1..5:0.637279897109;SRF:0.634364011855;ZNF384:0.621668614556;ELK1,4_GABP{A,B1}:0.586383278535;TLX1..3_NFIC{dimer}:0.574175536119;MAFB:0.569426497262;CRX:0.56593390602;GFI1B:0.547578389716;NR3C1:0.537122433507;NFE2L2:0.533586230245;bHLH_family:0.479471440758;FOX{I1,J2}:0.475869866462;STAT5{A,B}:0.457901672915;TEF:0.445584254494;HLF:0.442273598498;GZF1:0.426262930435;IKZF1:0.413753231274;CDC5L:0.409197534062;POU3F1..4:0.408669513662;PAX4:0.387339731225;CEBPA,B_DDIT3:0.378305700159;NKX6-1,2:0.375482070508;HMGA1,2:0.369067367084;TP53:0.3497202124;XBP1:0.348142892547;NFIX:0.34678220302;HAND1,2:0.327108864232;MAZ:0.318326581177;STAT2,4,6:0.313593391371;PATZ1:0.308209187104;EVI1:0.297228566979;NFATC1..3:0.277556143779;NFY{A,B,C}:0.262323113741;T:0.251042223634;LEF1_TCF7_TCF7L1,2:0.250579576677;TFDP1:0.245065968356;PRDM1:0.230724133303;HOX{A4,D4}:0.229097865534;GTF2I:0.228255874094;PPARG:0.225041091264;SPZ1:0.210860779268;NR5A1,2:0.208201499753;EBF1:0.196902967293;NR1H4:0.178932887533;ZNF143:0.176895896633;MYFfamily:0.170112304747;HMX1:0.160854184168;IRF1,2:0.149329753761;HOX{A6,A7,B6,B7}:0.132193338865;PBX1:0.129623968769;NRF1:0.127452574458;HNF4A_NR2F1,2:0.117228324641;TFCP2:0.100526365337;HOXA9_MEIS1:0.0987428529156;ATF6:0.082037922093;NANOG{mouse}:0.0802285789233;AHR_ARNT_ARNT2:0.0790272403647;XCPE1{core}:0.0700334126091;FOXA2:0.061646680461;NKX3-2:0.0587490964454;RXR{A,B,G}:0.0570239364661;AIRE:0.0564549299897;NFE2:0.0451762370525;HNF1A:0.0407013643657;ADNP_IRX_SIX_ZHX:0.0388573786283;MZF1:0.028460122563;BACH2:0.0192488192221;TOPORS:0.0090633538622;DBP:0.00539543775079;SOX5:0.000865098166114;PAX8:-0.00462908646355;NHLH1,2:-0.00726311190649;FOXQ1:-0.0125249306682;ZNF148:-0.0160453534418;ZIC1..3:-0.021882279183;FOS_FOS{B,L1}_JUN{B,D}:-0.0305690672407;MTE{core}:-0.0335305144632;RFX1:-0.0414355201161;SOX17:-0.0467133739284;ESRRA:-0.0683245737461;NR6A1:-0.0752550190402;IRF7:-0.116953762675;ZBTB6:-0.121151243172;PRRX1,2:-0.133253682729;ZNF423:-0.133726465523;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.137504803112;STAT1,3:-0.158428910411;NFIL3:-0.162671376055;FOSL2:-0.17488969031;MTF1:-0.190981089407;RREB1:-0.198744498005;VSX1,2:-0.208227300586;HIC1:-0.22841875624;SMAD1..7,9:-0.230443810821;RUNX1..3:-0.243819203632;DMAP1_NCOR{1,2}_SMARC:-0.247921638516;TFAP2B:-0.252138248261;LMO2:-0.258931847486;FOX{F1,F2,J1}:-0.25921555818;FOXO1,3,4:-0.266567672442;ELF1,2,4:-0.275483409964;JUN:-0.278222378072;GATA4:-0.284382315524;HIF1A:-0.319112333628;MED-1{core}:-0.322689730466;FOX{D1,D2}:-0.3242533404;ARID5B:-0.329635707797;PAX5:-0.344472788259;SOX2:-0.344680932324;MEF2{A,B,C,D}:-0.349122027186;TFAP2{A,C}:-0.352827713773;FOXM1:-0.372721221051;NFKB1_REL_RELA:-0.385761713926;ONECUT1,2:-0.389371553207;GATA6:-0.398388573522;POU6F1:-0.407229138423;REST:-0.414244817153;ZFP161:-0.433760990503;OCT4_SOX2{dimer}:-0.449042619365;SP1:-0.454792568436;EGR1..3:-0.461775680972;FOXP3:-0.465627403996;NKX2-3_NKX2-5:-0.487053391897;FOXN1:-0.487248342774;RXRA_VDR{dimer}:-0.503070973165;CDX1,2,4:-0.513615001119;BPTF:-0.515540999193;SPIB:-0.527611476888;PAX2:-0.555206438229;SREBF1,2:-0.563408582169;PDX1:-0.56403945947;ATF2:-0.570886982988;ATF5_CREB3:-0.580279867118;GCM1,2:-0.582152095071;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.594076581207;PAX3,7:-0.597886992901;ETS1,2:-0.60711910637;SPI1:-0.613010562823;RORA:-0.618713095152;AR:-0.619915382008;CREB1:-0.626849847054;MYOD1:-0.680711290465;SNAI1..3:-0.682134967544;PAX6:-0.694312617506;EP300:-0.697385010007;SOX{8,9,10}:-0.700497626275;ATF4:-0.702742539393;PITX1..3:-0.71460139947;BREu{core}:-0.736819135212;CUX2:-0.751389850453;FOXP1:-0.800086063074;TGIF1:-0.81772799906;POU2F1..3:-0.865035167641;HBP1_HMGB_SSRP1_UBTF:-0.877100495781;RFX2..5_RFXANK_RFXAP:-0.877974602434;ZEB1:-0.956656113728;NANOG:-1.01142979085;NKX2-1,4:-1.16754106983;ALX1:-1.22574754973;POU1F1:-1.24625738215;ZBTB16:-1.34440563839;IKZF2:-1.36218283545;RBPJ:-1.44186814656 | |top_motifs=TAL1_TCF{3,4,12}:1.95175010535;HSF1,2:1.83013764171;EN1,2:1.64342113655;MYBL2:1.57423525319;NKX2-2,8:1.27702301472;ALX4:1.27463564751;HES1:1.14777959286;ZNF238:1.09224137312;YY1:1.06769288396;PAX1,9:0.944557587056;NFE2L1:0.920873263019;KLF4:0.919006495536;UFEwm:0.917069737548;LHX3,4:0.871136635245;MYB:0.859067112888;ESR1:0.81375851635;GLI1..3:0.80686909408;TEAD1:0.801461653947;GTF2A1,2:0.78061024975;TBP:0.766658253418;TLX2:0.735946359447;TBX4,5:0.724507091004;TFAP4:0.697561361242;FOXL1:0.691762317194;NKX3-1:0.67828010503;HOX{A5,B5}:0.669825073904;POU5F1:0.660615574453;FOXD3:0.650138756761;GFI1:0.646837895527;E2F1..5:0.637279897109;SRF:0.634364011855;ZNF384:0.621668614556;ELK1,4_GABP{A,B1}:0.586383278535;TLX1..3_NFIC{dimer}:0.574175536119;MAFB:0.569426497262;CRX:0.56593390602;GFI1B:0.547578389716;NR3C1:0.537122433507;NFE2L2:0.533586230245;bHLH_family:0.479471440758;FOX{I1,J2}:0.475869866462;STAT5{A,B}:0.457901672915;TEF:0.445584254494;HLF:0.442273598498;GZF1:0.426262930435;IKZF1:0.413753231274;CDC5L:0.409197534062;POU3F1..4:0.408669513662;PAX4:0.387339731225;CEBPA,B_DDIT3:0.378305700159;NKX6-1,2:0.375482070508;HMGA1,2:0.369067367084;TP53:0.3497202124;XBP1:0.348142892547;NFIX:0.34678220302;HAND1,2:0.327108864232;MAZ:0.318326581177;STAT2,4,6:0.313593391371;PATZ1:0.308209187104;EVI1:0.297228566979;NFATC1..3:0.277556143779;NFY{A,B,C}:0.262323113741;T:0.251042223634;LEF1_TCF7_TCF7L1,2:0.250579576677;TFDP1:0.245065968356;PRDM1:0.230724133303;HOX{A4,D4}:0.229097865534;GTF2I:0.228255874094;PPARG:0.225041091264;SPZ1:0.210860779268;NR5A1,2:0.208201499753;EBF1:0.196902967293;NR1H4:0.178932887533;ZNF143:0.176895896633;MYFfamily:0.170112304747;HMX1:0.160854184168;IRF1,2:0.149329753761;HOX{A6,A7,B6,B7}:0.132193338865;PBX1:0.129623968769;NRF1:0.127452574458;HNF4A_NR2F1,2:0.117228324641;TFCP2:0.100526365337;HOXA9_MEIS1:0.0987428529156;ATF6:0.082037922093;NANOG{mouse}:0.0802285789233;AHR_ARNT_ARNT2:0.0790272403647;XCPE1{core}:0.0700334126091;FOXA2:0.061646680461;NKX3-2:0.0587490964454;RXR{A,B,G}:0.0570239364661;AIRE:0.0564549299897;NFE2:0.0451762370525;HNF1A:0.0407013643657;ADNP_IRX_SIX_ZHX:0.0388573786283;MZF1:0.028460122563;BACH2:0.0192488192221;TOPORS:0.0090633538622;DBP:0.00539543775079;SOX5:0.000865098166114;PAX8:-0.00462908646355;NHLH1,2:-0.00726311190649;FOXQ1:-0.0125249306682;ZNF148:-0.0160453534418;ZIC1..3:-0.021882279183;FOS_FOS{B,L1}_JUN{B,D}:-0.0305690672407;MTE{core}:-0.0335305144632;RFX1:-0.0414355201161;SOX17:-0.0467133739284;ESRRA:-0.0683245737461;NR6A1:-0.0752550190402;IRF7:-0.116953762675;ZBTB6:-0.121151243172;PRRX1,2:-0.133253682729;ZNF423:-0.133726465523;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.137504803112;STAT1,3:-0.158428910411;NFIL3:-0.162671376055;FOSL2:-0.17488969031;MTF1:-0.190981089407;RREB1:-0.198744498005;VSX1,2:-0.208227300586;HIC1:-0.22841875624;SMAD1..7,9:-0.230443810821;RUNX1..3:-0.243819203632;DMAP1_NCOR{1,2}_SMARC:-0.247921638516;TFAP2B:-0.252138248261;LMO2:-0.258931847486;FOX{F1,F2,J1}:-0.25921555818;FOXO1,3,4:-0.266567672442;ELF1,2,4:-0.275483409964;JUN:-0.278222378072;GATA4:-0.284382315524;HIF1A:-0.319112333628;MED-1{core}:-0.322689730466;FOX{D1,D2}:-0.3242533404;ARID5B:-0.329635707797;PAX5:-0.344472788259;SOX2:-0.344680932324;MEF2{A,B,C,D}:-0.349122027186;TFAP2{A,C}:-0.352827713773;FOXM1:-0.372721221051;NFKB1_REL_RELA:-0.385761713926;ONECUT1,2:-0.389371553207;GATA6:-0.398388573522;POU6F1:-0.407229138423;REST:-0.414244817153;ZFP161:-0.433760990503;OCT4_SOX2{dimer}:-0.449042619365;SP1:-0.454792568436;EGR1..3:-0.461775680972;FOXP3:-0.465627403996;NKX2-3_NKX2-5:-0.487053391897;FOXN1:-0.487248342774;RXRA_VDR{dimer}:-0.503070973165;CDX1,2,4:-0.513615001119;BPTF:-0.515540999193;SPIB:-0.527611476888;PAX2:-0.555206438229;SREBF1,2:-0.563408582169;PDX1:-0.56403945947;ATF2:-0.570886982988;ATF5_CREB3:-0.580279867118;GCM1,2:-0.582152095071;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.594076581207;PAX3,7:-0.597886992901;ETS1,2:-0.60711910637;SPI1:-0.613010562823;RORA:-0.618713095152;AR:-0.619915382008;CREB1:-0.626849847054;MYOD1:-0.680711290465;SNAI1..3:-0.682134967544;PAX6:-0.694312617506;EP300:-0.697385010007;SOX{8,9,10}:-0.700497626275;ATF4:-0.702742539393;PITX1..3:-0.71460139947;BREu{core}:-0.736819135212;CUX2:-0.751389850453;FOXP1:-0.800086063074;TGIF1:-0.81772799906;POU2F1..3:-0.865035167641;HBP1_HMGB_SSRP1_UBTF:-0.877100495781;RFX2..5_RFXANK_RFXAP:-0.877974602434;ZEB1:-0.956656113728;NANOG:-1.01142979085;NKX2-1,4:-1.16754106983;ALX1:-1.22574754973;POU1F1:-1.24625738215;ZBTB16:-1.34440563839;IKZF2:-1.36218283545;RBPJ:-1.44186814656 | ||
|xref= | |||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11254-116F3;search_select_hide=table117:FF:11254-116F3 | |||
}} | }} | ||
Latest revision as of 16:28, 3 June 2020
| Name: | Prostate Stromal Cells, donor1 |
|---|---|
| Species: | Human (Homo sapiens) |
| Library ID: | CNhs10883 |
| Sample type: | primary cells |
| Genomic View: | UCSC |
| RefEX: | Specific genes |
| FANTOM CAT: | 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13 |
| CAGEd-oPOSSUM: | link |
| ZENBU report : | link |
| Additional information | ||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Sample information
RNA information
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| CAGE Accession numbers | ||||||||||||||||||||||||||||||||||||||||||||||
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| Download raw sequence, BAM & CTSS | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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| RNA-Seq Accession numbers | ||||||||||||||||||||||||||||||||
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs10883
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs10883
| Novel motif | Logo | P-value |
|---|---|---|
| 1 | 1 | 0.991 |
| 10 | 10 | 0.403 |
| 100 | 100 | 0.0246 |
| 101 | 101 | 0.113 |
| 102 | 102 | 0.0214 |
| 103 | 103 | 0.456 |
| 104 | 104 | 0.662 |
| 105 | 105 | 0.275 |
| 106 | 106 | 0.343 |
| 107 | 107 | 0.13 |
| 108 | 108 | 0.799 |
| 109 | 109 | 0.247 |
| 11 | 11 | 0.901 |
| 110 | 110 | 0.176 |
| 111 | 111 | 0.346 |
| 112 | 112 | 0.716 |
| 113 | 113 | 0.316 |
| 114 | 114 | 0.719 |
| 115 | 115 | 0.0968 |
| 116 | 116 | 0.166 |
| 117 | 117 | 0.764 |
| 118 | 118 | 0.802 |
| 119 | 119 | 0.056 |
| 12 | 12 | 0.141 |
| 120 | 120 | 0.378 |
| 121 | 121 | 0.568 |
| 122 | 122 | 0.0926 |
| 123 | 123 | 0.0043 |
| 124 | 124 | 0.695 |
| 125 | 125 | 0.453 |
| 126 | 126 | 0.717 |
| 127 | 127 | 0.371 |
| 128 | 128 | 0.52 |
| 129 | 129 | 0.0273 |
| 13 | 13 | 0.0742 |
| 130 | 130 | 0.147 |
| 131 | 131 | 0.693 |
| 132 | 132 | 0.762 |
| 133 | 133 | 0.687 |
| 134 | 134 | 0.429 |
| 135 | 135 | 0.922 |
| 136 | 136 | 0.0166 |
| 137 | 137 | 0.0902 |
| 138 | 138 | 0.177 |
| 139 | 139 | 0.286 |
| 14 | 14 | 0.075 |
| 140 | 140 | 0.201 |
| 141 | 141 | 0.167 |
| 142 | 142 | 0.976 |
| 143 | 143 | 0.877 |
| 144 | 144 | 0.752 |
| 145 | 145 | 0.443 |
| 146 | 146 | 0.794 |
| 147 | 147 | 0.23 |
| 148 | 148 | 0.676 |
| 149 | 149 | 0.355 |
| 15 | 15 | 0.226 |
| 150 | 150 | 0.337 |
| 151 | 151 | 0.89 |
| 152 | 152 | 0.039 |
| 153 | 153 | 0.668 |
| 154 | 154 | 0.295 |
| 155 | 155 | 0.00418 |
| 156 | 156 | 0.864 |
| 157 | 157 | 0.15 |
| 158 | 158 | 0.00499 |
| 159 | 159 | 0.407 |
| 16 | 16 | 0.157 |
| 160 | 160 | 0.576 |
| 161 | 161 | 0.828 |
| 162 | 162 | 0.809 |
| 163 | 163 | 0.594 |
| 164 | 164 | 0.176 |
| 165 | 165 | 0.855 |
| 166 | 166 | 0.0742 |
| 167 | 167 | 0.41 |
| 168 | 168 | 0.96 |
| 169 | 169 | 0.0504 |
| 17 | 17 | 0.96 |
| 18 | 18 | 0.219 |
| 19 | 19 | 0.0147 |
| 2 | 2 | 0.374 |
| 20 | 20 | 0.341 |
| 21 | 21 | 0.182 |
| 22 | 22 | 0.711 |
| 23 | 23 | 0.344 |
| 24 | 24 | 0.737 |
| 25 | 25 | 0.365 |
| 26 | 26 | 0.613 |
| 27 | 27 | 0.921 |
| 28 | 28 | 0.0981 |
| 29 | 29 | 0.391 |
| 3 | 3 | 0.919 |
| 30 | 30 | 0.557 |
| 31 | 31 | 0.911 |
| 32 | 32 | 2.39001e-10 |
| 33 | 33 | 0.698 |
| 34 | 34 | 0.861 |
| 35 | 35 | 0.682 |
| 36 | 36 | 0.443 |
| 37 | 37 | 0.284 |
| 38 | 38 | 0.182 |
| 39 | 39 | 0.384 |
| 4 | 4 | 0.0414 |
| 40 | 40 | 0.767 |
| 41 | 41 | 0.0667 |
| 42 | 42 | 0.813 |
| 43 | 43 | 0.894 |
| 44 | 44 | 0.181 |
| 45 | 45 | 0.308 |
| 46 | 46 | 0.825 |
| 47 | 47 | 0.781 |
| 48 | 48 | 0.958 |
| 49 | 49 | 0.183 |
| 5 | 5 | 0.495 |
| 50 | 50 | 0.46 |
| 51 | 51 | 0.705 |
| 52 | 52 | 0.686 |
| 53 | 53 | 0.119 |
| 54 | 54 | 0.723 |
| 55 | 55 | 0.528 |
| 56 | 56 | 0.892 |
| 57 | 57 | 0.644 |
| 58 | 58 | 0.297 |
| 59 | 59 | 0.423 |
| 6 | 6 | 0.985 |
| 60 | 60 | 0.536 |
| 61 | 61 | 0.6 |
| 62 | 62 | 0.578 |
| 63 | 63 | 0.413 |
| 64 | 64 | 0.456 |
| 65 | 65 | 0.64 |
| 66 | 66 | 0.571 |
| 67 | 67 | 0.73 |
| 68 | 68 | 0.835 |
| 69 | 69 | 0.548 |
| 7 | 7 | 0.477 |
| 70 | 70 | 0.145 |
| 71 | 71 | 0.125 |
| 72 | 72 | 0.604 |
| 73 | 73 | 0.0186 |
| 74 | 74 | 0.292 |
| 75 | 75 | 0.657 |
| 76 | 76 | 0.57 |
| 77 | 77 | 0.19 |
| 78 | 78 | 0.129 |
| 79 | 79 | 0.0648 |
| 8 | 8 | 0.108 |
| 80 | 80 | 0.735 |
| 81 | 81 | 0.577 |
| 82 | 82 | 0.164 |
| 83 | 83 | 0.593 |
| 84 | 84 | 0.822 |
| 85 | 85 | 0.164 |
| 86 | 86 | 0.567 |
| 87 | 87 | 0.049 |
| 88 | 88 | 0.332 |
| 89 | 89 | 0.232 |
| 9 | 9 | 0.657 |
| 90 | 90 | 0.188 |
| 91 | 91 | 0.715 |
| 92 | 92 | 0.364 |
| 93 | 93 | 0.618 |
| 94 | 94 | 0.348 |
| 95 | 95 | 0.191 |
| 96 | 96 | 0.305 |
| 97 | 97 | 0.708 |
| 98 | 98 | 0.0362 |
| 99 | 99 | 4.90824e-4 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs10883
FANTOM5 (FF) ontology
Direct parent terms
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0002320 (connective tissue cell)
0002371 (somatic cell)
0000499 (stromal cell)
0000255 (eukaryotic cell)
0002622 (prostate stromal cell)
UBERON: Anatomy
0000468 (multi-cellular organism)
0002367 (prostate gland)
0002384 (connective tissue)
0000479 (tissue)
0005156 (reproductive structure)
0004119 (endoderm-derived structure)
0000062 (organ)
0004120 (mesoderm-derived structure)
0000077 (mixed endoderm/mesoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000990 (reproductive system)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0002530 (gland)
0010147 (male accessory sex gland)
0010317 (germ layer / neural crest derived structure)
0003937 (sex gland)
0005399 (male reproductive gland)
0003101 (male organism)
0000079 (male reproductive system)
FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000277 (human prostate stromal cell sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000134 (mesenchymal cell)
