FF:11391-118C5: Difference between revisions

Latest revision as of 17:57, 4 June 2020

Name:	Smooth Muscle Cells - Brain Vascular, donor3
Species:	Human (Homo sapiens)
Library ID:	CNhs12004
Sample type:	primary cells
Genomic View:	UCSC
RefEX:	Specific genes
FANTOM CAT:	1, 2, 3, 4, 5, 6, 7, 8, 9, 10
CAGEd-oPOSSUM:	link
ZENBU report :	link

Additional information

Sample information

strain	NA
tissue	brain
dev stage	fetus
sex	unknown
age	fetal
cell type	smooth muscle cell
cell line	NA
company	Sciencell/3H
collaboration	FANTOM5 OSC CORE (contact: Al Forrest)
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	4342
catalog number	SC1105
sample type	total RNA
extraction protocol (Details)	OP-RNA-extraction-totalRNA-TRIzol-isopropanol-v1.0

CAGE Accession numbers

Method		Sample accession id
CAGE		SAMD00005430

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs12004		CAGE		DRX008477		DRR009349

Accession ID Hg19

Library id		BAM		CTSS
CNhs12004		DRZ000774		DRZ002159

Accession ID Hg38

Library id		BAM		CTSS
CNhs12004		DRZ012124		DRZ013509

Download raw sequence, BAM & CTSS

Hg19

Fasta	BAM	CTSS
download	download	donwload

Hg38

BAM	CTSS
download	donwload

RNA-Seq Accession numbers

Method		Sample accession id
sRNA-Seq		SAMD00005430

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
SRhi10003.TAGCTT		sRNA-Seq		DRX037019		DRR041385

Accession ID Hg19

Library id		BAM		CTSS
SRhi10003.TAGCTT		DRZ007027

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

Coexpression cluster	score
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral	0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate	0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural	0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial	0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel	0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS	0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils	0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural	0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis	0
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy	0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood	0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate	0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma	-0.143
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial	0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic	0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat	0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal	0
C113-thyroid-throat-lung-lymph-small-colon-trachea	0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma	0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus	0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea	0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal	0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula	0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD19	0
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils	0
C120-immature-salivary-tongue-skin-cervical-CD14-CD34	0
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B	0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal	0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils	0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte	0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus	0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain	0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil	0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP	0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small	0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD4	0
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar	0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin	0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived	0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma	0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis	0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum	0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal	0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic	0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal	0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal	0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen	0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen	0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B	0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair	0.103
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast	0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis	0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal	0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell	0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral	0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal	0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum	0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue	0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small	0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast	0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung	0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular	0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate	0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid	0
C156-plasma-splenic-hereditary-B-large-xeroderma-b	0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea	0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen	0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal	0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain	0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral	0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta	0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon	0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal	0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma	0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial	0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung	0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD4	0
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral	0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma	0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage	0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet	0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye	0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes	0.246
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose	0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils	0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural	-0.0117
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19	-0.118
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous	0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus	0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil	0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood	0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle	-0.135
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar	0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute	0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt	0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid	0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis	0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid	0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage	0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat	0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen	0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma	0
C190-colon-small-rectum-duodenum-appendix-temporal-oral	0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic	0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD4	0
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD14	0
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar	0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal	0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial	0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival	0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes	0.434
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma	0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast	0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat	0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed	0.204
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall	0
C202-salivary-skin-penis-tongue-uterus-cervical-immature	0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic	0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD34	0
C205-mycosis-cord-hairy-xeroderma-CD4-B-b	0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary	0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte	0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous	0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen	0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic	0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil	0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney	0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD34	0
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral	0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain	0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature	0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD34	0
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital	0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary	0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum	0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD19	0
C220-Adipocyte-mature-left-breast-skin-liver-adipose	0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular	0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte	0.387
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte	0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal	0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal	0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal	0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue	0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult	0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart	0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD14	0
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung	0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis	0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum	0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF7	0
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma	0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas	0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma	0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial	0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell	0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy	0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral	0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal	0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus	-0.461
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach	0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing	0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage	0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic	0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory	0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital	0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast	0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial	0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall	0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD4	0
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue	0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma	0.0758
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum	0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris	0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast	0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla	0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral	0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric	0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing	0.0758
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole	0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood	0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal	0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms	0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil	0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute	0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8	0
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast	0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear	0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate	0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD4	0
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung	0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth	0
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum	0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil	0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast	0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte	0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal	0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal	0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma	0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory	0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial	0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic	0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD4	0
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small	-0.234
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat	0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular	0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus	0.129
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic	0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial	0.14
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal	0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal	0.0758
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left	0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart	0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature	0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea	0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal	0.565
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD34	0
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral	0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte	0.246
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed	0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral	0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital	0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood	0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala	0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal	0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils	0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic	0.746
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid	0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole	0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus	0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea	0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory	0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen	0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile	0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula	0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt	0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea	0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms	0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD133	0
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus	0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small	0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal	0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon	0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder	0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature	0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS	0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel	0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix	0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus	0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma	0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas	0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma	0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas	0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma	0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary	0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature	0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma	0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue	0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural	0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H9	0
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic	0.715
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature	0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical	0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b	0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph	0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute	0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic	0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils	0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus	0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung	0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma	0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK	0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast	0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue	0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate	0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left	0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal	0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy	0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral	0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell	0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD8	0
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea	0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal	0.463
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD34	0
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast	0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid	0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD34	0
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic	0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon	0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma	0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma	0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic	0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived	0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic	0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left	0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen	0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair	0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole	0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular	0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma	0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid	0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix	0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain	0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole	0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs12004

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	0.152
MA0003.1	MA0003.1	0.229
MA0004.1	MA0004.1	0.642
MA0006.1	MA0006.1	0.0515
MA0007.1	MA0007.1	0.105
MA0009.1	MA0009.1	0.295
MA0014.1	MA0014.1	0.775
MA0017.1	MA0017.1	0.538
MA0018.2	MA0018.2	2.59631e-4
MA0019.1	MA0019.1	0.831
MA0024.1	MA0024.1	5.70974e-6
MA0025.1	MA0025.1	0.00165
MA0027.1	MA0027.1	0.296
MA0028.1	MA0028.1	0.102
MA0029.1	MA0029.1	0.203
MA0030.1	MA0030.1	0.0877
MA0031.1	MA0031.1	0.0122
MA0035.2	MA0035.2	0.377
MA0038.1	MA0038.1	0.805
MA0039.2	MA0039.2	0.794
MA0040.1	MA0040.1	0.957
MA0041.1	MA0041.1	0.221
MA0042.1	MA0042.1	0.421
MA0043.1	MA0043.1	5.03715e-4
MA0046.1	MA0046.1	0.638
MA0047.2	MA0047.2	0.276
MA0048.1	MA0048.1	0.515
MA0050.1	MA0050.1	0.216
MA0051.1	MA0051.1	0.534
MA0052.1	MA0052.1	7.70665e-4
MA0055.1	MA0055.1	0.439
MA0057.1	MA0057.1	0.78
MA0058.1	MA0058.1	0.677
MA0059.1	MA0059.1	0.189
MA0060.1	MA0060.1	0.0179
MA0061.1	MA0061.1	0.0053
MA0062.2	MA0062.2	9.55257e-6
MA0065.2	MA0065.2	0.288
MA0066.1	MA0066.1	0.572
MA0067.1	MA0067.1	0.00865
MA0068.1	MA0068.1	0.841
MA0069.1	MA0069.1	0.26
MA0070.1	MA0070.1	0.955
MA0071.1	MA0071.1	0.285
MA0072.1	MA0072.1	0.393
MA0073.1	MA0073.1	0.739
MA0074.1	MA0074.1	0.178
MA0076.1	MA0076.1	0.0109
MA0077.1	MA0077.1	0.702
MA0078.1	MA0078.1	0.325
MA0079.2	MA0079.2	0.4
MA0080.2	MA0080.2	9.40174e-10
MA0081.1	MA0081.1	0.00858
MA0083.1	MA0083.1	9.1041e-4
MA0084.1	MA0084.1	0.173
MA0087.1	MA0087.1	0.0706
MA0088.1	MA0088.1	0.63
MA0090.1	MA0090.1	9.70695e-6
MA0091.1	MA0091.1	0.0197
MA0092.1	MA0092.1	0.233
MA0093.1	MA0093.1	0.772
MA0099.2	MA0099.2	0.00304
MA0100.1	MA0100.1	0.171
MA0101.1	MA0101.1	0.0188
MA0102.2	MA0102.2	0.711
MA0103.1	MA0103.1	0.00439
MA0104.2	MA0104.2	0.0143
MA0105.1	MA0105.1	0.0188
MA0106.1	MA0106.1	0.56
MA0107.1	MA0107.1	0.0131
MA0108.2	MA0108.2	0.209
MA0111.1	MA0111.1	0.974
MA0112.2	MA0112.2	0.227
MA0113.1	MA0113.1	0.403
MA0114.1	MA0114.1	0.372
MA0115.1	MA0115.1	0.168
MA0116.1	MA0116.1	0.0537
MA0117.1	MA0117.1	0.236
MA0119.1	MA0119.1	0.298
MA0122.1	MA0122.1	0.846
MA0124.1	MA0124.1	0.502
MA0125.1	MA0125.1	0.945
MA0131.1	MA0131.1	0.15
MA0135.1	MA0135.1	0.118
MA0136.1	MA0136.1	4.22951e-13
MA0137.2	MA0137.2	0.754
MA0138.2	MA0138.2	0.327
MA0139.1	MA0139.1	0.42
MA0140.1	MA0140.1	0.638
MA0141.1	MA0141.1	0.966
MA0142.1	MA0142.1	0.458
MA0143.1	MA0143.1	0.681
MA0144.1	MA0144.1	0.194
MA0145.1	MA0145.1	0.216
MA0146.1	MA0146.1	0.3
MA0147.1	MA0147.1	0.0119
MA0148.1	MA0148.1	0.642
MA0149.1	MA0149.1	0.356
MA0150.1	MA0150.1	0.112
MA0152.1	MA0152.1	0.86
MA0153.1	MA0153.1	0.215
MA0154.1	MA0154.1	0.221
MA0155.1	MA0155.1	0.185
MA0156.1	MA0156.1	6.61796e-8
MA0157.1	MA0157.1	0.0431
MA0159.1	MA0159.1	0.314
MA0160.1	MA0160.1	0.353
MA0162.1	MA0162.1	0.0227
MA0163.1	MA0163.1	0.746
MA0164.1	MA0164.1	0.619
MA0258.1	MA0258.1	0.724
MA0259.1	MA0259.1	0.113

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs12004

Novel motif	Logo	P-value
1	1	0.32
10	10	0.221
100	100	0.701
101	101	0.452
102	102	0.0619
103	103	0.628
104	104	0.575
105	105	0.158
106	106	0.451
107	107	0.128
108	108	0.365
109	109	0.619
11	11	0.992
110	110	0.895
111	111	0.129
112	112	0.349
113	113	0.649
114	114	0.654
115	115	0.145
116	116	0.033
117	117	0.54
118	118	0.299
119	119	0.742
12	12	0.189
120	120	0.363
121	121	0.67
122	122	0.0175
123	123	0.0102
124	124	0.289
125	125	0.0584
126	126	0.976
127	127	0.758
128	128	0.22
129	129	0.334
13	13	0.321
130	130	0.446
131	131	0.935
132	132	0.445
133	133	0.494
134	134	0.439
135	135	0.254
136	136	0.234
137	137	0.0261
138	138	0.891
139	139	0.512
14	14	0.209
140	140	0.338
141	141	0.128
142	142	0.743
143	143	0.46
144	144	0.51
145	145	0.394
146	146	0.799
147	147	0.109
148	148	0.64
149	149	0.315
15	15	0.544
150	150	0.413
151	151	0.358
152	152	0.0286
153	153	0.568
154	154	0.415
155	155	0.00645
156	156	0.3
157	157	0.384
158	158	0.0114
159	159	0.405
16	16	0.077
160	160	0.781
161	161	0.806
162	162	0.358
163	163	0.131
164	164	0.299
165	165	0.0491
166	166	0.231
167	167	0.511
168	168	0.103
169	169	0.225
17	17	0.86
18	18	0.958
19	19	0.253
2	2	0.431
20	20	0.34
21	21	0.88
22	22	0.249
23	23	0.37
24	24	0.46
25	25	0.0384
26	26	0.312
27	27	0.505
28	28	0.194
29	29	0.779
3	3	0.948
30	30	0.38
31	31	0.366
32	32	2.96932e-18
33	33	0.849
34	34	0.513
35	35	0.145
36	36	0.0378
37	37	0.684
38	38	0.372
39	39	0.586
4	4	0.0694
40	40	0.286
41	41	0.0824
42	42	0.353
43	43	0.56
44	44	0.282
45	45	0.94
46	46	0.718
47	47	0.728
48	48	0.852
49	49	0.103
5	5	0.614
50	50	0.834
51	51	0.521
52	52	0.723
53	53	0.152
54	54	0.66
55	55	0.245
56	56	0.788
57	57	0.896
58	58	0.0246
59	59	0.699
6	6	0.569
60	60	0.462
61	61	0.938
62	62	0.0655
63	63	0.938
64	64	0.542
65	65	0.831
66	66	0.904
67	67	0.273
68	68	0.864
69	69	0.667
7	7	0.215
70	70	0.322
71	71	0.505
72	72	0.975
73	73	0.0243
74	74	0.834
75	75	0.116
76	76	0.494
77	77	0.245
78	78	0.961
79	79	0.0801
8	8	0.373
80	80	0.135
81	81	0.868
82	82	0.813
83	83	0.92
84	84	0.855
85	85	0.458
86	86	0.964
87	87	0.0272
88	88	0.997
89	89	0.693
9	9	0.791
90	90	0.38
91	91	0.776
92	92	0.158
93	93	0.118
94	94	0.619
95	95	0.442
96	96	0.389
97	97	0.418
98	98	0.0872
99	99	2.03874e-4

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs12004

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
EFO:0002091 biological replicate
FF:0000170 human smooth muscle cell of the brain vasculature sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0002371 (somatic cell)
0000393 (electrically responsive cell)
0000183 (contractile cell)
0000187 (muscle cell)
0000192 (smooth muscle cell)
0000211 (electrically active cell)
0000255 (eukaryotic cell)
0000359 (vascular associated smooth muscle cell)
0002590 (smooth muscle cell of the brain vasculature)

UBERON: Anatomy
0000468 (multi-cellular organism)
0000955 (brain)
0004121 (ectoderm-derived structure)
0011216 (organ system subdivision)
0000062 (organ)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0005284 (brain vasculature)
0002049 (vasculature)
0006876 (vasculature of organ)
0010317 (germ layer / neural crest derived structure)
0007798 (vascular system)
0001017 (central nervous system)
0001016 (nervous system)
0004535 (cardiovascular system)
0001009 (circulatory system)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000167 (smooth muscle cell sample)
0000170 (human smooth muscle cell of the brain vasculature sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
CL:0000355 (multi-potent skeletal muscle stem cell)
CL:0000222 (mesodermal cell)
CL:0000514 (smooth muscle myoblast)

@@ Line 1: / Line 1: @@
 {{f5samples
-|ancestors_in_anatomy_facet=UBERON:0000033,UBERON:0000061,UBERON:0000073,UBERON:0000119,UBERON:0000153,UBERON:0000383,UBERON:0000465,UBERON:0000467,UBERON:0000468,UBERON:0000475,UBERON:0000477,UBERON:0000479,UBERON:0000480,UBERON:0000481,UBERON:0000483,UBERON:0000486,UBERON:0000490,UBERON:0000914,UBERON:0000922,UBERON:0000923,UBERON:0000924,UBERON:0000926,UBERON:0000955,UBERON:0001009,UBERON:0001015,UBERON:0001016,UBERON:0001017,UBERON:0001062,UBERON:0001134,UBERON:0002036,UBERON:0002049,UBERON:0002050,UBERON:0002200,UBERON:0002204,UBERON:0002329,UBERON:0002385,UBERON:0002532,UBERON:0002616,UBERON:0003059,UBERON:0003077,UBERON:0003082,UBERON:0003104,UBERON:0004120,UBERON:0004121,UBERON:0004290,UBERON:0004535,UBERON:0005284,UBERON:0005291,UBERON:0005423,UBERON:0005743,UBERON:0007798,UBERON:0009142
+|DRA_sample_Accession=CAGE@SAMD00005430
-|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000004,CL:0000012,CL:0000034,CL:0000048,CL:0000055,CL:0000056,CL:0000144,CL:0000183,CL:0000187,CL:0000192,CL:0000211,CL:0000220,CL:0000222,CL:0000255,CL:0000355,CL:0000359,CL:0000393,CL:0000514,CL:0000548,CL:0000680,CL:0000723,CL:0002321,CL:0002371,CL:0002590
+|DRA_sample_Accession_RNASeq=sRNA-Seq@SAMD00005430
+|accession_numbers=CAGE;DRX008477;DRR009349;DRZ000774;DRZ002159;DRZ012124;DRZ013509
+|accession_numbers_RNASeq=sRNA-Seq;DRX037019;DRR041385;DRZ007027
+|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000955,UBERON:0004121,UBERON:0011216,UBERON:0000062,UBERON:0000061,UBERON:0000465,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0005284,UBERON:0002049,UBERON:0006876,UBERON:0010317,UBERON:0007798,UBERON:0001017,UBERON:0001016,UBERON:0004535,UBERON:0001009
+|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0002371,CL:0000393,CL:0000183,CL:0000187,CL:0000192,CL:0000211,CL:0000255,CL:0000359,CL:0002590
 |ancestors_in_disease_facet=
+|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000001,FF:0000167,FF:0000170
 |comment=
 |created_by=
 |creation_date=
+|data_phase=2
+|datafreeze_phase=2
 |def=
 |expression_enrichment_score=chr15:83953397..83953425,-!p1@BNC1!1.67!52.80!BNC1;;chr11:61520075..61520136,+!p1@C11orf9!1.44!54.71!C11orf9;;chr16:86544113..86544145,+!p1@FOXF1!1.41!30.31!FOXF1;;chr15:42749722..42749739,-!p2@ZFP106!1.36!38.70!ZFP106;;chr4:174451370..174451387,-!p1@HAND2!1.31!19.63!HAND2;;chr7:35293685..35293718,-!p1@TBX20!1.26!17.35!TBX20;;chr19:46801639..46801699,+!p1@HIF3A!1.25!16.58!HIF3A;;chr11:46299199..46299233,+!p1@CREB3L1!1.24!83.31!CREB3L1;;chr4:174450089..174450153,-!p2@HAND2!1.23!15.82!HAND2;;chr14:62162285..62162296,+!p3@HIF1A!1.19!73.96!HIF1A;;chr8:11561684..11561751,+!p1@GATA4!1.19!14.49!GATA4;;chr7:19157248..19157268,-!p1@TWIST1!1.16!37.55!TWIST1;;chr14:62162258..62162269,+!p2@HIF1A!1.10!110.76!HIF1A;;chr8:106330656..106330684,+!p1@ZFPM2!1.10!30.88!ZFPM2;;chr2:185463247..185463263,+!p1@ZNF804A!1.06!18.87!ZNF804A;;chr11:46299539..46299620,+!p2@CREB3L1!1.04!16.97!CREB3L1;;chr6:134210243..134210257,+!p1@TCF21!1.03!9.72!TCF21;;chr5:92918919..92918942,+!p1@NR2F1!1.01!41.75!NR2F1;;chr17:26697276..26697303,-!p2@SEBOX,p2@VTN!0.97!8.39!SEBOX;;chr2:46524537..46524553,+!p1@EPAS1!0.96!816.85!EPAS1;;chrY:21906594..21906622,-!p1@KDM5D!0.95!8.01!KDM5D;;chr6:85474299..85474324,-!p1@TBX18!0.93!13.73!TBX18;;chr17:1959369..1959388,+!p2@HIC1!0.84!16.58!HIC1;;chr8:49833948..49833973,-!p2@SNAI2!0.83!39.08!SNAI2;;chr3:150126759..150126784,+!p2@TSC22D2!0.83!27.83!TSC22D2;;chr18:19749541..19749557,+!p1@GATA6!0.83!19.25!GATA6;;chr17:46622070..46622109,-!p1@HOXB2!0.83!13.34!HOXB2;;chr17:46655704..46655718,-!p2@HOXB4!0.83!8.96!HOXB4;;chr8:93074803..93074845,-!p1@RUNX1T1!0.83!5.72!RUNX1T1;;chr8:37963466..37963506,+!p3@ASH2L!0.82!7.24!ASH2L;;chr2:66662281..66662308,+!p1@MEIS1!0.81!20.02!MEIS1;;chr12:104531823..104531849,-!p5@NFYB!0.81!12.01!NFYB;;chr15:83953373..83953386,-!p2@BNC1!0.81!5.53!BNC1;;chr17:46621937..46621966,-!p2@HOXB2!0.80!15.44!HOXB2;;chr11:12696071..12696086,+!p3@TEAD1!0.80!7.24!TEAD1;;chrY:2803415..2803468,+!p1@ZFY!0.80!5.34!ZFY;;chr8:106330696..106330719,+!p2@ZFPM2!0.79!6.67!ZFPM2;;chr3:178789522..178789564,-!p2@ZMAT3!0.78!40.22!ZMAT3;;chr8:93074848..93074871,-!p3@RUNX1T1!0.77!4.96!RUNX1T1;;chr17:26697304..26697335,-!p1@SEBOX,p1@VTN!0.77!4.96!SEBOX;;chr2:231084820..231084836,-!p5@SP110!0.76!5.53!SP110;;chr3:147127142..147127168,+!p1@ZIC1!0.76!4.77!ZIC1;;chr7:28220198..28220269,-!p2@JAZF1!0.75!45.94!JAZF1;;chr2:45236540..45236577,-!p1@SIX2!0.75!4.58!SIX2;;chr3:147127177..147127194,+!p2@ZIC1!0.75!4.58!ZIC1;;chr12:80085061..80085119,-!p6@PAWR!0.74!7.63!PAWR;;chr15:96876966..96877017,+!p12@NR2F2!0.74!6.67!NR2F2;;chr14:62213758..62213774,+!p8@HIF1A!0.74!5.91!HIF1A;;chr14:62162224..62162254,+!p1@HIF1A!0.73!712.39!HIF1A;;chr3:150126904..150126958,+!p7@TSC22D2!0.72!7.82!TSC22D2;;chr5:92918956..92918969,+!p4@NR2F1!0.72!4.77!NR2F1;;chr11:32457075..32457095,-!p1@WT1!0.72!4.19!WT1;;chr9:16870710..16870763,-!p1@BNC2!0.71!7.63!BNC2;;chr6:45296048..45296082,+!p1@RUNX2!0.71!4.77!RUNX2;;chr8:49833978..49833996,-!p1@SNAI2!0.70!93.60!SNAI2;;chr17:46622114..46622138,-!p4@HOXB2!0.70!6.48!HOXB2;;chr8:55370487..55370503,+!p1@SOX17!0.70!4.00!SOX17;;chr3:147111231..147111281,+!p3@ZIC1!0.70!4.00!ZIC1;;chr7:19157043..19157088,-!p2@TWIST1!0.69!10.68!TWIST1;;chr11:113930425..113930471,+!p1@ZBTB16!0.68!5.72!ZBTB16;;chr12:24715376..24715432,-!p1@SOX5!0.68!4.96!SOX5;;chr2:27357446..27357475,-!p2@PREB!0.66!13.92!PREB;;chr2:46524897..46524911,+!p2@EPAS1!0.66!11.06!EPAS1;;chr14:62203595..62203676,+!p4@HIF1A!0.66!7.24!HIF1A;;chr3:25469724..25469773,+!p1@RARB!0.66!5.53!RARB;;chr2:46602901..46602926,+!p7@EPAS1!0.66!4.96!EPAS1;;chr17:46675420..46675465,-!p3@HOXB6!0.66!4.19!HOXB6;;chr12:66218836..66218888,+!p1@HMGA2!0.65!37.74!HMGA2;;chr21:47063625..47063658,+!p1@PCBP3!0.65!17.35!PCBP3;;chr12:66218255..66218304,+!p3@HMGA2!0.65!10.48!HMGA2;;chr7:44143978..44143989,+!p2@AEBP1!0.65!6.86!AEBP1;;chr18:19749517..19749531,+!p3@GATA6!0.65!6.67!GATA6;;chr5:139492456..139492489,+!p7@PURA!0.65!3.43!PURA;;chr12:66218598..66218645,+!p2@HMGA2!0.63!17.35!HMGA2;;chr15:83953474..83953483,-!p3@BNC1!0.63!3.24!BNC1;;chr1:151032860..151032918,+!p1@MLLT11!0.62!45.37!MLLT11;;chr9:4300050..4300118,-!p1@GLIS3!0.62!24.21!GLIS3;;chr5:92919100..92919135,+!p3@NR2F1!0.62!4.00!NR2F1;;chr6:85473156..85473210,-!p2@TBX18!0.62!4.00!TBX18;;chr1:54204818..54204870,-!p@chr1:54204818..54204870,-!0.62!3.43!GLIS1;;chr17:1958388..1958404,+!p1@HIC1!0.61!23.07!HIC1;;chr2:19558373..19558392,-!p1@OSR1!0.61!9.53!OSR1;;chr15:96869255..96869291,+!p6@NR2F2!0.61!6.10!NR2F2;;chr18:19749386..19749404,+!p2@GATA6!0.61!4.77!GATA6;;chr4:174451350..174451363,-!p3@HAND2!0.61!3.05!HAND2;;chr7:44143925..44143970,+!p1@AEBP1!0.60!81.21!AEBP1;;chr7:17338266..17338282,+!p1@AHR!0.60!38.70!AHR;;chr2:66662895..66662907,+!p3@MEIS1!0.59!3.81!MEIS1;;chrY:21906761..21906810,-!p2@KDM5D!0.59!2.86!KDM5D;;chr2:145275162..145275202,-!p2@ZEB2!0.58!20.21!ZEB2;;chr15:57511609..57511651,+!p2@TCF12!0.58!5.15!TCF12;;chr8:72756667..72756736,-!p2@MSC!0.58!4.77!MSC;;chr3:178789993..178790049,-!p5@ZMAT3!0.58!4.38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+|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000056;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000187;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000192;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000222;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000359;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002590;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001016;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002385;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0006876;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0007798
+|ffid_belonging_in_development=CL:0000355,CL:0000222,CL:0000514
 |fonse_cell_line=
 |fonse_cell_line_closure=
@@ Line 35: / Line 44: @@
 |fonse_treatment_closure=
 |has_quality=
+|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Smooth%2520Muscle%2520Cells%2520-%2520Brain%2520Vascular%252c%2520donor3.CNhs12004.11391-118C5.hg19.nobarcode.bam
+|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Smooth%2520Muscle%2520Cells%2520-%2520Brain%2520Vascular%252c%2520donor3.CNhs12004.11391-118C5.hg19.ctss.bed.gz
+|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Smooth%2520Muscle%2520Cells%2520-%2520Brain%2520Vascular%252c%2520donor3.CNhs12004.11391-118C5.hg19.nobarcode.rdna.fa.gz
+|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Smooth%2520Muscle%2520Cells%2520-%2520Brain%2520Vascular%252c%2520donor3.CNhs12004.11391-118C5.hg38.nobarcode.bam
+|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Smooth%2520Muscle%2520Cells%2520-%2520Brain%2520Vascular%252c%2520donor3.CNhs12004.11391-118C5.hg38.nobarcode.ctss.bed.gz
 |id=FF:11391-118C5
-|is_a=EFO:0002091;;FF:0000002;;FF:0000170;;FF:0000210
+|is_a=EFO:0002091;;FF:0000170
+|is_obsolete=
+|library_id=CNhs12004
+|library_id_phase_based=2:CNhs12004
+|microRNAs=
+|microRNAs_nn=
+|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11391
+|microRNAs_nonnovel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#srna;sample;SRhi10003.TAGCTT.11391
+|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11391
+|microRNAs_novel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer_novel/#/human#srna;sample;SRhi10003.TAGCTT.11391
 |name=Smooth Muscle Cells - Brain Vascular, donor3
 |namespace=FANTOM5
@@ Line 42: / Line 65: @@
 |profile_cagescan=,,,
 |profile_hcage=CNhs12004,LSID837,release011,COMPLETED
-|profile_rnaseq=,,,
+|profile_rnaseq=
 |profile_srnaseq=SRhi10003,,,
+|refex=http://refex.dbcls.jp/genelist.php?lang
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 |rna_box=118
 |rna_catalog_number=SC1105
@@ Line 56: / Line 82: @@
 |rna_tube_id=118C5
 |rna_weight_ug=10
+|rnaseq_library_id=SRhi10003.TAGCTT
 |sample_age=fetal
+|sample_category=primary cells
 |sample_cell_catalog=N/A
 |sample_cell_line=
@@ Line 69: / Line 97: @@
 |sample_ethnicity=unknown
 |sample_experimental_condition=
+|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0005737;cytoplasm;4.58373120347347e-211!GO:0044424;intracellular part;3.52142723327878e-209!GO:0043226;organelle;1.66449561476259e-158!GO:0043229;intracellular organelle;3.24041499256861e-158!GO:0044444;cytoplasmic part;4.47433136146551e-158!GO:0043231;intracellular membrane-bound organelle;1.15078792254946e-157!GO:0043227;membrane-bound organelle;2.30848176727485e-157!GO:0044422;organelle part;2.78846152669856e-123!GO:0044446;intracellular organelle part;7.53424588886479e-122!GO:0032991;macromolecular complex;3.56823568688319e-78!GO:0044238;primary metabolic process;3.04330244435223e-76!GO:0044237;cellular metabolic process;1.95260812727506e-75!GO:0030529;ribonucleoprotein complex;7.10086920936054e-73!GO:0005515;protein binding;6.7723770161363e-70!GO:0005739;mitochondrion;3.7743623670153e-69!GO:0043170;macromolecule metabolic process;4.75234763333359e-63!GO:0031090;organelle membrane;1.08521548024444e-61!GO:0043233;organelle lumen;6.13641678036339e-60!GO:0031974;membrane-enclosed lumen;6.13641678036339e-60!GO:0019538;protein metabolic process;1.50934329067362e-57!GO:0003723;RNA binding;1.66006450538639e-55!GO:0044260;cellular macromolecule metabolic process;4.97197184802253e-52!GO:0044267;cellular protein metabolic process;7.44988671050803e-51!GO:0044428;nuclear part;1.39935621555539e-50!GO:0009058;biosynthetic process;2.558666944605e-49!GO:0005840;ribosome;2.66797274042897e-49!GO:0033036;macromolecule localization;9.25498513762373e-48!GO:0015031;protein transport;1.27074172681619e-47!GO:0006412;translation;3.46504868824981e-46!GO:0044429;mitochondrial part;4.72750166959249e-46!GO:0045184;establishment of protein localization;6.84526165704663e-45!GO:0008104;protein localization;1.11173633189953e-44!GO:0003735;structural constituent of ribosome;9.25090717700245e-44!GO:0016043;cellular component organization and biogenesis;2.82945085974314e-43!GO:0031967;organelle envelope;9.03506540649922e-42!GO:0031975;envelope;2.34779444471398e-41!GO:0044249;cellular biosynthetic process;5.22824361911352e-41!GO:0009059;macromolecule biosynthetic process;8.75201038114015e-41!GO:0005829;cytosol;1.96919902894021e-40!GO:0005634;nucleus;5.22047214361232e-40!GO:0043234;protein complex;1.06131129010575e-38!GO:0033279;ribosomal subunit;5.46778818092923e-38!GO:0046907;intracellular transport;2.91533195283512e-37!GO:0006396;RNA processing;4.22956704010737e-33!GO:0005740;mitochondrial envelope;2.54102525079322e-31!GO:0031981;nuclear lumen;6.51755254555602e-31!GO:0006886;intracellular protein transport;1.03561854313961e-30!GO:0031966;mitochondrial membrane;1.08926188583789e-29!GO:0005830;cytosolic ribosome (sensu Eukaryota);3.20882088804945e-29!GO:0019866;organelle inner membrane;3.93803369974402e-28!GO:0016071;mRNA metabolic process;5.44988105991537e-28!GO:0012505;endomembrane system;1.53446958463546e-27!GO:0043283;biopolymer metabolic process;3.19990869231375e-27!GO:0005783;endoplasmic reticulum;5.76159664456996e-27!GO:0005743;mitochondrial inner membrane;1.09629311898223e-26!GO:0065003;macromolecular complex assembly;5.67806392485987e-26!GO:0008380;RNA splicing;2.20090855234069e-25!GO:0051649;establishment of cellular localization;2.90768561699289e-24!GO:0044445;cytosolic part;5.26549872314936e-24!GO:0051641;cellular localization;5.73481861424882e-24!GO:0006119;oxidative phosphorylation;1.1499512996881e-23!GO:0006397;mRNA processing;4.0882107204045e-23!GO:0005794;Golgi apparatus;5.95436628276411e-23!GO:0022613;ribonucleoprotein complex biogenesis and assembly;6.47398927801145e-23!GO:0006996;organelle organization and biogenesis;6.92414432207439e-23!GO:0022607;cellular component assembly;8.19198960438435e-23!GO:0010467;gene expression;1.6718219580104e-22!GO:0048770;pigment granule;5.72325684926503e-21!GO:0042470;melanosome;5.72325684926503e-21!GO:0044432;endoplasmic reticulum part;1.59222075821055e-20!GO:0000166;nucleotide binding;2.79488207712245e-20!GO:0044455;mitochondrial membrane part;3.06456331830499e-20!GO:0006457;protein folding;4.1608201127031e-20!GO:0043228;non-membrane-bound organelle;4.31751636295175e-20!GO:0043232;intracellular non-membrane-bound organelle;4.31751636295175e-20!GO:0015934;large ribosomal subunit;9.41311305634576e-20!GO:0015935;small ribosomal subunit;2.77892730313499e-19!GO:0005654;nucleoplasm;3.5770219891932e-19!GO:0016462;pyrophosphatase activity;1.2926418107455e-18!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;1.42003405422215e-18!GO:0016817;hydrolase activity, acting on acid anhydrides;2.19468528850945e-18!GO:0031980;mitochondrial lumen;2.6665077085344e-18!GO:0005759;mitochondrial matrix;2.6665077085344e-18!GO:0017111;nucleoside-triphosphatase activity;7.41261530689443e-18!GO:0005746;mitochondrial respiratory chain;1.11398488373047e-17!GO:0051186;cofactor metabolic process;1.53099202920845e-17!GO:0005681;spliceosome;1.670136938355e-17!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;1.98420714232791e-17!GO:0016874;ligase activity;7.22874946683944e-17!GO:0048193;Golgi vesicle transport;9.63512438523691e-17!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;1.03022660507101e-16!GO:0016192;vesicle-mediated transport;1.45149277092281e-16!GO:0051603;proteolysis involved in cellular protein catabolic process;2.98335085911538e-16!GO:0000502;proteasome complex (sensu Eukaryota);5.40025517756099e-16!GO:0019941;modification-dependent protein catabolic process;6.29673450188707e-16!GO:0043632;modification-dependent macromolecule catabolic process;6.29673450188707e-16!GO:0044265;cellular macromolecule catabolic process;6.75295969858563e-16!GO:0022618;protein-RNA complex assembly;6.75295969858563e-16!GO:0006512;ubiquitin cycle;7.57320574780683e-16!GO:0044257;cellular protein catabolic process;7.79793763484439e-16!GO:0050136;NADH dehydrogenase (quinone) activity;9.31571126351336e-16!GO:0003954;NADH dehydrogenase activity;9.31571126351336e-16!GO:0008137;NADH dehydrogenase (ubiquinone) activity;9.31571126351336e-16!GO:0044451;nucleoplasm part;1.01732112128144e-15!GO:0044248;cellular catabolic process;1.13402039105298e-15!GO:0006511;ubiquitin-dependent protein catabolic process;1.17305406831744e-15!GO:0043285;biopolymer catabolic process;2.31541005649863e-15!GO:0043412;biopolymer modification;2.33926543712462e-15!GO:0032553;ribonucleotide binding;2.6707491778932e-15!GO:0032555;purine ribonucleotide binding;2.6707491778932e-15!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);2.6707491778932e-15!GO:0017076;purine nucleotide binding;4.15945254587473e-15!GO:0006605;protein targeting;8.16280572612436e-15!GO:0042175;nuclear envelope-endoplasmic reticulum network;9.56406534667768e-15!GO:0030163;protein catabolic process;1.59663680067184e-14!GO:0006464;protein modification process;2.0571746964265e-14!GO:0051082;unfolded protein binding;2.35184623904087e-14!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);2.75955379320849e-14!GO:0009057;macromolecule catabolic process;2.80232045620741e-14!GO:0005789;endoplasmic reticulum membrane;2.81802649314954e-14!GO:0042775;organelle ATP synthesis coupled electron transport;5.69415463751353e-14!GO:0042773;ATP synthesis coupled electron transport;5.69415463751353e-14!GO:0030964;NADH dehydrogenase complex (quinone);6.66791259722223e-14!GO:0045271;respiratory chain complex I;6.66791259722223e-14!GO:0005747;mitochondrial respiratory chain complex I;6.66791259722223e-14!GO:0008135;translation factor activity, nucleic acid binding;7.11957918617296e-14!GO:0006732;coenzyme metabolic process;7.5421183203317e-14!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;9.02177492752244e-14!GO:0008134;transcription factor binding;1.18711708533191e-13!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;2.05423908257202e-13!GO:0005761;mitochondrial ribosome;4.68490811079143e-13!GO:0000313;organellar ribosome;4.68490811079143e-13!GO:0005730;nucleolus;9.98499115226796e-13!GO:0005793;ER-Golgi intermediate compartment;2.95152799644609e-12!GO:0006259;DNA metabolic process;3.01238682967099e-12!GO:0007049;cell cycle;3.09881546018689e-12!GO:0012501;programmed cell death;3.36826049975005e-12!GO:0006915;apoptosis;1.02665554441464e-11!GO:0009055;electron carrier activity;1.44544112407772e-11!GO:0043687;post-translational protein modification;2.09930877096367e-11!GO:0005524;ATP binding;2.22598629147533e-11!GO:0032559;adenyl ribonucleotide binding;2.44348793249423e-11!GO:0005635;nuclear envelope;3.19512363482253e-11!GO:0003743;translation initiation factor activity;3.92173141034828e-11!GO:0030554;adenyl nucleotide binding;4.763728785028e-11!GO:0031965;nuclear membrane;9.54711260514951e-11!GO:0008219;cell death;1.22207073067899e-10!GO:0016265;death;1.22207073067899e-10!GO:0009259;ribonucleotide metabolic process;1.27862747414137e-10!GO:0005768;endosome;1.27862747414137e-10!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;1.94722899453379e-10!GO:0006413;translational initiation;1.97884965638414e-10!GO:0044431;Golgi apparatus part;2.37473559901892e-10!GO:0006163;purine nucleotide metabolic process;4.61029886141927e-10!GO:0009150;purine ribonucleotide metabolic process;5.34844849630075e-10!GO:0008565;protein transporter activity;5.96704680768142e-10!GO:0009056;catabolic process;7.79858280659385e-10!GO:0008639;small protein conjugating enzyme activity;7.85521230953618e-10!GO:0006913;nucleocytoplasmic transport;9.56095883405195e-10!GO:0019787;small conjugating protein ligase activity;9.7615339863583e-10!GO:0000398;nuclear mRNA splicing, via spliceosome;1.15138068391267e-09!GO:0000375;RNA splicing, via transesterification reactions;1.15138068391267e-09!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;1.15138068391267e-09!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;1.17541914089407e-09!GO:0006461;protein complex assembly;1.53758682965939e-09!GO:0004842;ubiquitin-protein ligase activity;1.55537551730014e-09!GO:0003924;GTPase activity;1.61108146533651e-09!GO:0051169;nuclear transport;1.99559090062521e-09!GO:0009260;ribonucleotide biosynthetic process;2.02881301115004e-09!GO:0006164;purine nucleotide biosynthetic process;2.16671330289217e-09!GO:0009152;purine ribonucleotide biosynthetic process;2.41039975825203e-09!GO:0016491;oxidoreductase activity;2.4430640068531e-09!GO:0009199;ribonucleoside triphosphate metabolic process;2.50045373572711e-09!GO:0006446;regulation of translational initiation;2.80801231211319e-09!GO:0016879;ligase activity, forming carbon-nitrogen bonds;3.08863186570543e-09!GO:0009141;nucleoside triphosphate metabolic process;3.62993788283228e-09!GO:0006888;ER to Golgi vesicle-mediated transport;3.74252369209351e-09!GO:0051188;cofactor biosynthetic process;4.00637511749904e-09!GO:0009205;purine ribonucleoside triphosphate metabolic process;4.17934741868698e-09!GO:0009144;purine nucleoside triphosphate metabolic process;4.17934741868698e-09!GO:0044453;nuclear membrane part;4.58145639777806e-09!GO:0015986;ATP synthesis coupled proton transport;5.02984754179192e-09!GO:0015985;energy coupled proton transport, down electrochemical gradient;5.02984754179192e-09!GO:0009060;aerobic respiration;5.30760430117638e-09!GO:0009142;nucleoside triphosphate biosynthetic process;6.18977589454405e-09!GO:0009201;ribonucleoside triphosphate biosynthetic process;6.18977589454405e-09!GO:0005788;endoplasmic reticulum lumen;8.01214856734265e-09!GO:0003712;transcription cofactor activity;8.01214856734265e-09!GO:0048523;negative regulation of cellular process;8.06381281970312e-09!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;1.05305901685197e-08!GO:0009145;purine nucleoside triphosphate biosynthetic process;1.05305901685197e-08!GO:0016604;nuclear body;1.09249021716004e-08!GO:0016740;transferase activity;1.09480640093824e-08!GO:0022402;cell cycle process;1.19449693373881e-08!GO:0030120;vesicle coat;1.21429595440952e-08!GO:0030662;coated vesicle membrane;1.21429595440952e-08!GO:0016881;acid-amino acid ligase activity;1.24292074202739e-08!GO:0045333;cellular respiration;1.33038726031661e-08!GO:0016023;cytoplasmic membrane-bound vesicle;1.46799143139421e-08!GO:0031988;membrane-bound vesicle;1.56346016377618e-08!GO:0019829;cation-transporting ATPase activity;1.8975840505158e-08!GO:0003676;nucleic acid binding;1.98873547477608e-08!GO:0051246;regulation of protein metabolic process;2.07224668862412e-08!GO:0017038;protein import;2.47491892630001e-08!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;2.54759699597259e-08!GO:0015078;hydrogen ion transmembrane transporter activity;2.71658073396637e-08!GO:0042254;ribosome biogenesis and assembly;2.89049047428734e-08!GO:0048475;coated membrane;3.06214518893521e-08!GO:0030117;membrane coat;3.06214518893521e-08!GO:0000139;Golgi membrane;4.84379321150833e-08!GO:0046034;ATP metabolic process;4.92925277838369e-08!GO:0042623;ATPase activity, coupled;5.23188014079459e-08!GO:0043067;regulation of programmed cell death;5.44572214001011e-08!GO:0042981;regulation of apoptosis;7.17553364918991e-08!GO:0006974;response to DNA damage stimulus;7.36436956912471e-08!GO:0016887;ATPase activity;7.81281804751622e-08!GO:0031982;vesicle;8.80018976435416e-08!GO:0006793;phosphorus metabolic process;8.97914921068107e-08!GO:0006796;phosphate metabolic process;8.97914921068107e-08!GO:0031410;cytoplasmic vesicle;9.61144144967609e-08!GO:0006754;ATP biosynthetic process;1.04089405187835e-07!GO:0006753;nucleoside phosphate metabolic process;1.04089405187835e-07!GO:0006399;tRNA metabolic process;1.7921772752686e-07!GO:0016310;phosphorylation;1.89016920604089e-07!GO:0008654;phospholipid biosynthetic process;2.2642279663101e-07!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;2.4240454397334e-07!GO:0016469;proton-transporting two-sector ATPase complex;2.66619029226743e-07!GO:0065002;intracellular protein transport across a membrane;2.77789070262937e-07!GO:0051726;regulation of cell cycle;3.25512324234649e-07!GO:0000278;mitotic cell cycle;3.34541970289948e-07!GO:0006099;tricarboxylic acid cycle;3.34541970289948e-07!GO:0046356;acetyl-CoA catabolic process;3.34541970289948e-07!GO:0009108;coenzyme biosynthetic process;3.34541970289948e-07!GO:0000074;regulation of progression through cell cycle;3.54934093710571e-07!GO:0051187;cofactor catabolic process;4.16796539211793e-07!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;4.16796539211793e-07!GO:0004812;aminoacyl-tRNA ligase activity;4.16796539211793e-07!GO:0016875;ligase activity, forming carbon-oxygen bonds;4.16796539211793e-07!GO:0005839;proteasome core complex (sensu Eukaryota);4.25539016862541e-07!GO:0048519;negative regulation of biological process;4.50895455953856e-07!GO:0006091;generation of precursor metabolites and energy;4.66474218603241e-07!GO:0009117;nucleotide metabolic process;4.66824178634235e-07!GO:0005773;vacuole;5.11084878622214e-07!GO:0007005;mitochondrion organization and biogenesis;5.33734286297703e-07!GO:0005643;nuclear pore;6.00057483874608e-07!GO:0004386;helicase activity;6.19513263633958e-07!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;6.34875848120444e-07!GO:0043038;amino acid activation;6.45303410130432e-07!GO:0006418;tRNA aminoacylation for protein translation;6.45303410130432e-07!GO:0043039;tRNA aminoacylation;6.45303410130432e-07!GO:0005770;late endosome;6.96321001767798e-07!GO:0043069;negative regulation of programmed cell death;6.97745172210507e-07!GO:0016607;nuclear speck;7.07670688239725e-07!GO:0005798;Golgi-associated vesicle;7.61715722889495e-07!GO:0016787;hydrolase activity;7.81985382334429e-07!GO:0009109;coenzyme catabolic process;9.81765709036356e-07!GO:0044440;endosomal part;9.83083005936922e-07!GO:0010008;endosome membrane;9.83083005936922e-07!GO:0005525;GTP binding;1.11957618510248e-06!GO:0043066;negative regulation of apoptosis;1.23543647984025e-06!GO:0006752;group transfer coenzyme metabolic process;1.24096311920489e-06!GO:0006084;acetyl-CoA metabolic process;1.24475628516807e-06!GO:0008026;ATP-dependent helicase activity;1.36687763884745e-06!GO:0016853;isomerase activity;1.56088220194614e-06!GO:0045259;proton-transporting ATP synthase complex;1.95578147190599e-06!GO:0030532;small nuclear ribonucleoprotein complex;2.24622540915233e-06!GO:0031252;leading edge;2.58309047355215e-06!GO:0046930;pore complex;2.62109374787856e-06!GO:0004298;threonine endopeptidase activity;2.87113015196074e-06!GO:0016070;RNA metabolic process;2.87640519834252e-06!GO:0007249;I-kappaB kinase/NF-kappaB cascade;3.80207884990085e-06!GO:0008610;lipid biosynthetic process;4.28089234543356e-06!GO:0015077;monovalent inorganic cation transmembrane transporter activity;4.32584097584451e-06!GO:0006916;anti-apoptosis;5.18729345332913e-06!GO:0032561;guanyl ribonucleotide binding;6.09898446729062e-06!GO:0019001;guanyl nucleotide binding;6.09898446729062e-06!GO:0051170;nuclear import;6.21215839053695e-06!GO:0009719;response to endogenous stimulus;7.46867590635276e-06!GO:0006403;RNA localization;7.75173950792009e-06!GO:0032446;protein modification by small protein conjugation;7.82817310312785e-06!GO:0015980;energy derivation by oxidation of organic compounds;7.84593914444994e-06!GO:0030133;transport vesicle;7.87543954706316e-06!GO:0050657;nucleic acid transport;8.59591595682027e-06!GO:0051236;establishment of RNA localization;8.59591595682027e-06!GO:0050658;RNA transport;8.59591595682027e-06!GO:0019899;enzyme binding;8.80607641847023e-06!GO:0003714;transcription corepressor activity;8.8205392955235e-06!GO:0016567;protein ubiquitination;9.95973232311993e-06!GO:0000323;lytic vacuole;1.0308967815885e-05!GO:0005764;lysosome;1.0308967815885e-05!GO:0045454;cell redox homeostasis;1.11091930766055e-05!GO:0045786;negative regulation of progression through cell cycle;1.1486881363716e-05!GO:0000151;ubiquitin ligase complex;1.22502029308698e-05!GO:0006606;protein import into nucleus;1.2486954935704e-05!GO:0006281;DNA repair;1.34615202479032e-05!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;1.3556443717901e-05!GO:0016772;transferase activity, transferring phosphorus-containing groups;1.42933612250124e-05!GO:0051789;response to protein stimulus;1.51478526292192e-05!GO:0006986;response to unfolded protein;1.51478526292192e-05!GO:0005762;mitochondrial large ribosomal subunit;1.5169162872197e-05!GO:0000315;organellar large ribosomal subunit;1.5169162872197e-05!GO:0006613;cotranslational protein targeting to membrane;1.61022147499042e-05!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;1.75179290062228e-05!GO:0030036;actin cytoskeleton organization and biogenesis;1.75955044221633e-05!GO:0043623;cellular protein complex assembly;1.78883883805468e-05!GO:0016859;cis-trans isomerase activity;1.80420745793115e-05!GO:0031968;organelle outer membrane;1.89501462808454e-05!GO:0006366;transcription from RNA polymerase II promoter;1.9087265219291e-05!GO:0007243;protein kinase cascade;2.12349406489266e-05!GO:0016126;sterol biosynthetic process;2.55547244851127e-05!GO:0006325;establishment and/or maintenance of chromatin architecture;2.55547244851127e-05!GO:0019867;outer membrane;2.79584220641177e-05!GO:0050794;regulation of cellular process;2.84518290174102e-05!GO:0008361;regulation of cell size;2.98124006344725e-05!GO:0005769;early endosome;3.18865029277749e-05!GO:0006364;rRNA processing;3.75779851701479e-05!GO:0044262;cellular carbohydrate metabolic process;4.41895009708571e-05!GO:0030867;rough endoplasmic reticulum membrane;4.72155316112153e-05!GO:0005791;rough endoplasmic reticulum;5.19717089788968e-05!GO:0016049;cell growth;5.19717089788968e-05!GO:0019843;rRNA binding;5.71313686278681e-05!GO:0046467;membrane lipid biosynthetic process;6.60266106489385e-05!GO:0000245;spliceosome assembly;6.70624863060546e-05!GO:0006323;DNA packaging;7.15180420035836e-05!GO:0016072;rRNA metabolic process;7.75579284993906e-05!GO:0007264;small GTPase mediated signal transduction;8.69095777164498e-05!GO:0005741;mitochondrial outer membrane;8.9910491368791e-05!GO:0051276;chromosome organization and biogenesis;9.82799190955543e-05!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;0.000104094908101264!GO:0005905;coated pit;0.000116594278154634!GO:0033116;ER-Golgi intermediate compartment membrane;0.000118824254906007!GO:0006612;protein targeting to membrane;0.000128032088328822!GO:0001558;regulation of cell growth;0.00013056270669775!GO:0030029;actin filament-based process;0.000143666393607727!GO:0005048;signal sequence binding;0.000144585196782001!GO:0016779;nucleotidyltransferase activity;0.000148117230165612!GO:0051028;mRNA transport;0.000163844965453702!GO:0030659;cytoplasmic vesicle membrane;0.000163850473720998!GO:0022403;cell cycle phase;0.000175825529932492!GO:0015630;microtubule cytoskeleton;0.00018393507062772!GO:0016564;transcription repressor activity;0.000187835451573228!GO:0003724;RNA helicase activity;0.000198619271822141!GO:0046474;glycerophospholipid biosynthetic process;0.000198798270797058!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;0.000221975739353!GO:0051329;interphase of mitotic cell cycle;0.00022425297279743!GO:0043566;structure-specific DNA binding;0.000228281096459065!GO:0051427;hormone receptor binding;0.00023507762975059!GO:0005667;transcription factor complex;0.000241702151866125!GO:0003697;single-stranded DNA binding;0.000242812134715356!GO:0005885;Arp2/3 protein complex;0.000256655406365984!GO:0048522;positive regulation of cellular process;0.000256692749207187!GO:0003713;transcription coactivator activity;0.000256692749207187!GO:0051301;cell division;0.000264557490500205!GO:0007010;cytoskeleton organization and biogenesis;0.000266247920395866!GO:0030663;COPI coated vesicle membrane;0.000296551956440154!GO:0030126;COPI vesicle coat;0.000296551956440154!GO:0065004;protein-DNA complex assembly;0.000315365104079963!GO:0004576;oligosaccharyl transferase activity;0.000328017645288205!GO:0006695;cholesterol biosynthetic process;0.000333164646263995!GO:0006082;organic acid metabolic process;0.000341490038536674!GO:0008250;oligosaccharyl transferase complex;0.000355895696828746!GO:0019752;carboxylic acid metabolic process;0.000360010797075507!GO:0009165;nucleotide biosynthetic process;0.000361913510560469!GO:0051325;interphase;0.000369320653287449!GO:0016568;chromatin modification;0.000373038499605646!GO:0016044;membrane organization and biogenesis;0.000376975746971839!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.000386327049666168!GO:0008092;cytoskeletal protein binding;0.000394947990172872!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.000427593756059608!GO:0043021;ribonucleoprotein binding;0.000428856932680953!GO:0035257;nuclear hormone receptor binding;0.000453896740546432!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.000467595616809629!GO:0030176;integral to endoplasmic reticulum membrane;0.000491646390121907!GO:0044433;cytoplasmic vesicle part;0.000520290441609238!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.000541938370887503!GO:0005813;centrosome;0.000551360754991407!GO:0030137;COPI-coated vesicle;0.000555697856799983!GO:0018196;peptidyl-asparagine modification;0.000601770259025549!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.000601770259025549!GO:0006260;DNA replication;0.000614174519275914!GO:0031324;negative regulation of cellular metabolic process;0.000628319631480289!GO:0031202;RNA splicing factor activity, transesterification mechanism;0.000696162079158058!GO:0000087;M phase of mitotic cell cycle;0.000735777474444031!GO:0050789;regulation of biological process;0.00076052915620821!GO:0007067;mitosis;0.000770943652575563!GO:0044255;cellular lipid metabolic process;0.000787603693167726!GO:0006891;intra-Golgi vesicle-mediated transport;0.000792404321152069!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.000839283496219845!GO:0043681;protein import into mitochondrion;0.000846507403722433!GO:0051920;peroxiredoxin activity;0.000847796050984855!GO:0016197;endosome transport;0.000938886948970116!GO:0000314;organellar small ribosomal subunit;0.000962408124555684!GO:0005763;mitochondrial small ribosomal subunit;0.000962408124555684!GO:0030658;transport vesicle membrane;0.00113574179581843!GO:0008047;enzyme activator activity;0.00120644489525809!GO:0004177;aminopeptidase activity;0.00122001113436559!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.00122066741297444!GO:0015399;primary active transmembrane transporter activity;0.00122066741297444!GO:0012506;vesicle membrane;0.00125385426387375!GO:0051168;nuclear export;0.00129785712887634!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00134165558021243!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00134165558021243!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00134165558021243!GO:0031072;heat shock protein binding;0.00142615852195727!GO:0015992;proton transport;0.00150063373890155!GO:0045045;secretory pathway;0.00150698821383039!GO:0006818;hydrogen transport;0.00150994945104801!GO:0046489;phosphoinositide biosynthetic process;0.00150994945104801!GO:0006626;protein targeting to mitochondrion;0.00153167155109663!GO:0005815;microtubule organizing center;0.00157812646068887!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.00158190199087718!GO:0016563;transcription activator activity;0.00164887084267795!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.00169152852507371!GO:0007050;cell cycle arrest;0.00174089757748513!GO:0022890;inorganic cation transmembrane transporter activity;0.00178106413952818!GO:0003729;mRNA binding;0.00190858276150101!GO:0006979;response to oxidative stress;0.00190858276150101!GO:0006643;membrane lipid metabolic process;0.00199182118340442!GO:0030132;clathrin coat of coated pit;0.00200170056783137!GO:0031902;late endosome membrane;0.00207649250399592!GO:0000059;protein import into nucleus, docking;0.00207898996036228!GO:0035258;steroid hormone receptor binding;0.00212612696820259!GO:0003899;DNA-directed RNA polymerase activity;0.00213661545493105!GO:0005852;eukaryotic translation initiation factor 3 complex;0.00219265504406778!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.00226433672594791!GO:0015002;heme-copper terminal oxidase activity;0.00226433672594791!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.00226433672594791!GO:0004129;cytochrome-c oxidase activity;0.00226433672594791!GO:0046483;heterocycle metabolic process;0.00229905021076043!GO:0006650;glycerophospholipid metabolic process;0.0023201157476321!GO:0030027;lamellipodium;0.00235517607933618!GO:0001726;ruffle;0.00237166836736595!GO:0030134;ER to Golgi transport vesicle;0.0024121644480679!GO:0006333;chromatin assembly or disassembly;0.00242905334225139!GO:0030118;clathrin coat;0.00246630741193471!GO:0030880;RNA polymerase complex;0.0025048836432345!GO:0006839;mitochondrial transport;0.00250660825311329!GO:0065009;regulation of a molecular function;0.00250660825311329!GO:0043284;biopolymer biosynthetic process;0.00252018509073761!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.00253762629946295!GO:0009892;negative regulation of metabolic process;0.00254331421816773!GO:0006892;post-Golgi vesicle-mediated transport;0.00261039941847661!GO:0005694;chromosome;0.00261431313217269!GO:0009967;positive regulation of signal transduction;0.00261431313217269!GO:0048471;perinuclear region of cytoplasm;0.00285836610404815!GO:0008186;RNA-dependent ATPase activity;0.00286336278395524!GO:0006383;transcription from RNA polymerase III promoter;0.00292981345508388!GO:0051252;regulation of RNA metabolic process;0.0029756566221241!GO:0006414;translational elongation;0.0029756566221241!GO:0005774;vacuolar membrane;0.0029756566221241!GO:0007040;lysosome organization and biogenesis;0.00310724573314417!GO:0048500;signal recognition particle;0.00324106648823585!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.00324715682977192!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.00324715682977192!GO:0004674;protein serine/threonine kinase activity;0.00342347764272492!GO:0016125;sterol metabolic process;0.00350251724191576!GO:0048487;beta-tubulin binding;0.00351434339516184!GO:0030660;Golgi-associated vesicle membrane;0.00354833895463786!GO:0030127;COPII vesicle coat;0.00369398571384842!GO:0012507;ER to Golgi transport vesicle membrane;0.00369398571384842!GO:0007033;vacuole organization and biogenesis;0.00384874462699054!GO:0016706;oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors;0.00449381870319195!GO:0042802;identical protein binding;0.00454902273375192!GO:0007006;mitochondrial membrane organization and biogenesis;0.00463917664926671!GO:0040008;regulation of growth;0.00464332395490572!GO:0051128;regulation of cellular component organization and biogenesis;0.00507230394556879!GO:0043488;regulation of mRNA stability;0.00509414112156218!GO:0043487;regulation of RNA stability;0.00509414112156218!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.00509909660272978!GO:0000428;DNA-directed RNA polymerase complex;0.00509909660272978!GO:0000785;chromatin;0.00522081541276563!GO:0030145;manganese ion binding;0.00525180172462162!GO:0006520;amino acid metabolic process;0.00548241726022669!GO:0016780;phosphotransferase activity, for other substituted phosphate groups;0.00550507177348378!GO:0006672;ceramide metabolic process;0.00554637914896173!GO:0044427;chromosomal part;0.00564255158635331!GO:0008139;nuclear localization sequence binding;0.00569044450371516!GO:0051287;NAD binding;0.00572780482356176!GO:0006807;nitrogen compound metabolic process;0.00576712262843154!GO:0016281;eukaryotic translation initiation factor 4F complex;0.00607869705733677!GO:0043492;ATPase activity, coupled to movement of substances;0.00608854768062715!GO:0006629;lipid metabolic process;0.00610266271592718!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.00662359730388132!GO:0045047;protein targeting to ER;0.00662359730388132!GO:0005096;GTPase activator activity;0.00669054946627019!GO:0016627;oxidoreductase activity, acting on the CH-CH group of donors;0.00669054946627019!GO:0046519;sphingoid metabolic process;0.00686448259135769!GO:0004004;ATP-dependent RNA helicase activity;0.006918220893033!GO:0006595;polyamine metabolic process;0.00704529359484316!GO:0031301;integral to organelle membrane;0.00711084027015541!GO:0008632;apoptotic program;0.00721101518959408!GO:0006118;electron transport;0.00745312271720572!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.00766299648856102!GO:0006778;porphyrin metabolic process;0.00773271321197465!GO:0033013;tetrapyrrole metabolic process;0.00773271321197465!GO:0017166;vinculin binding;0.00790343299728464!GO:0048468;cell development;0.00791050915636975!GO:0044437;vacuolar part;0.00796944760147739!GO:0015631;tubulin binding;0.00807082541210312!GO:0048518;positive regulation of biological process;0.00820614522893473!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.00824878459511527!GO:0006402;mRNA catabolic process;0.00825869765070834!GO:0006509;membrane protein ectodomain proteolysis;0.00846896395057264!GO:0033619;membrane protein proteolysis;0.00846896395057264!GO:0006790;sulfur metabolic process;0.00857613378479567!GO:0008286;insulin receptor signaling pathway;0.00859599467081803!GO:0000082;G1/S transition of mitotic cell cycle;0.00864675603954731!GO:0006644;phospholipid metabolic process;0.00876363831569147!GO:0030119;AP-type membrane coat adaptor complex;0.00878767986485301!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.0088076530168599!GO:0032940;secretion by cell;0.0088076530168599!GO:0006066;alcohol metabolic process;0.00892060203953862!GO:0017015;regulation of transforming growth factor beta receptor signaling pathway;0.00900752165963371!GO:0016860;intramolecular oxidoreductase activity;0.0090646200286398!GO:0008180;signalosome;0.00921411287833477!GO:0006740;NADPH regeneration;0.00923828023983111!GO:0006098;pentose-phosphate shunt;0.00923828023983111!GO:0005869;dynactin complex;0.0094328561292017!GO:0045792;negative regulation of cell size;0.00962254372262898!GO:0005100;Rho GTPase activator activity;0.00969144889941297!GO:0050662;coenzyme binding;0.00970758725782387!GO:0016363;nuclear matrix;0.00992135802984622!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.0103302154466971!GO:0005765;lysosomal membrane;0.0108654168453473!GO:0043068;positive regulation of programmed cell death;0.0110024658048046!GO:0031227;intrinsic to endoplasmic reticulum membrane;0.0111197790727197!GO:0031543;peptidyl-proline dioxygenase activity;0.0111467293228444!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.0111572857183259!GO:0007265;Ras protein signal transduction;0.0111717234630897!GO:0043065;positive regulation of apoptosis;0.0112783679457055!GO:0000307;cyclin-dependent protein kinase holoenzyme complex;0.0112783679457055!GO:0008312;7S RNA binding;0.0112944293981732!GO:0019798;procollagen-proline dioxygenase activity;0.0114377430382134!GO:0005099;Ras GTPase activator activity;0.0114696840248821!GO:0016408;C-acyltransferase activity;0.0116408291424769!GO:0007034;vacuolar transport;0.0116445015961128!GO:0005862;muscle thin filament tropomyosin;0.0119137416945491!GO:0009112;nucleobase metabolic process;0.0119137416945491!GO:0031901;early endosome membrane;0.012174069862012!GO:0030308;negative regulation of cell growth;0.012174069862012!GO:0009308;amine metabolic process;0.012174069862012!GO:0050811;GABA receptor binding;0.0122092571454222!GO:0030125;clathrin vesicle coat;0.0122226421405398!GO:0030665;clathrin coated vesicle membrane;0.0122226421405398!GO:0051101;regulation of DNA binding;0.0123545652347969!GO:0030384;phosphoinositide metabolic process;0.0123895167820756!GO:0031625;ubiquitin protein ligase binding;0.0126107156815741!GO:0031418;L-ascorbic acid binding;0.0127395855269371!GO:0016301;kinase activity;0.0128069892768419!GO:0051539;4 iron, 4 sulfur cluster binding;0.0130640239575739!GO:0007030;Golgi organization and biogenesis;0.0131097330182959!GO:0006497;protein amino acid lipidation;0.0134693940720204!GO:0050681;androgen receptor binding;0.0137010680121678!GO:0030521;androgen receptor signaling pathway;0.0137264745054831!GO:0042158;lipoprotein biosynthetic process;0.0143681169239308!GO:0033559;unsaturated fatty acid metabolic process;0.0144317130064135!GO:0006636;unsaturated fatty acid biosynthetic process;0.0144317130064135!GO:0005684;U2-dependent spliceosome;0.0145353113952651!GO:0043022;ribosome binding;0.0145897146537732!GO:0033673;negative regulation of kinase activity;0.0149125973984407!GO:0006469;negative regulation of protein kinase activity;0.0149125973984407!GO:0016481;negative regulation of transcription;0.0149125973984407!GO:0030131;clathrin adaptor complex;0.0151010534143126!GO:0042168;heme metabolic process;0.0153816167873791!GO:0003690;double-stranded DNA binding;0.0155004236434602!GO:0005975;carbohydrate metabolic process;0.0156345712953363!GO:0051087;chaperone binding;0.0157795874007664!GO:0051045;negative regulation of membrane protein ectodomain proteolysis;0.0158737151358556!GO:0051043;regulation of membrane protein ectodomain proteolysis;0.0158737151358556!GO:0031529;ruffle organization and biogenesis;0.0171157025185688!GO:0050790;regulation of catalytic activity;0.0172658519812674!GO:0006357;regulation of transcription from RNA polymerase II promoter;0.0175456251825849!GO:0051540;metal cluster binding;0.0175592189584987!GO:0051536;iron-sulfur cluster binding;0.0175592189584987!GO:0006352;transcription initiation;0.0183462351204489!GO:0030518;steroid hormone receptor signaling pathway;0.0185109303950936!GO:0051348;negative regulation of transferase activity;0.018655105667003!GO:0003746;translation elongation factor activity;0.0191412888941853!GO:0000339;RNA cap binding;0.019255251862764!GO:0005832;chaperonin-containing T-complex;0.0194849206878204!GO:0035035;histone acetyltransferase binding;0.019499704495322!GO:0003711;transcription elongation regulator activity;0.019499704495322!GO:0006897;endocytosis;0.0195305864371203!GO:0010324;membrane invagination;0.0195305864371203!GO:0000279;M phase;0.0196971374061704!GO:0005665;DNA-directed RNA polymerase II, core complex;0.0201886947344714!GO:0000079;regulation of cyclin-dependent protein kinase activity;0.0201893394641859!GO:0003779;actin binding;0.0201893394641859!GO:0016272;prefoldin complex;0.0202297983714819!GO:0005586;collagen type III;0.0203517621541049!GO:0030041;actin filament polymerization;0.0204826883360852!GO:0016667;oxidoreductase activity, acting on sulfur group of donors;0.0205353786326552!GO:0006506;GPI anchor biosynthetic process;0.0207804264790853!GO:0006779;porphyrin biosynthetic process;0.0214403392569434!GO:0033014;tetrapyrrole biosynthetic process;0.0214403392569434!GO:0006100;tricarboxylic acid cycle intermediate metabolic process;0.0215723429652837!GO:0005801;cis-Golgi network;0.0219222159470418!GO:0007242;intracellular signaling cascade;0.0230335782300696!GO:0022406;membrane docking;0.0233639845176915!GO:0048278;vesicle docking;0.0233639845176915!GO:0000049;tRNA binding;0.0233717783876606!GO:0005637;nuclear inner membrane;0.0235690058182873!GO:0008154;actin polymerization and/or depolymerization;0.0236773821395313!GO:0051098;regulation of binding;0.0237561914846689!GO:0019205;nucleobase, nucleoside, nucleotide kinase activity;0.0247377909922541!GO:0006334;nucleosome assembly;0.0249102696083419!GO:0006611;protein export from nucleus;0.0253317090090129!GO:0005938;cell cortex;0.0254311172312808!GO:0006739;NADP metabolic process;0.0262274953294565!GO:0006505;GPI anchor metabolic process;0.0268282793067125!GO:0015036;disulfide oxidoreductase activity;0.026923740645519!GO:0030833;regulation of actin filament polymerization;0.026923740645519!GO:0006720;isoprenoid metabolic process;0.0272439168688728!GO:0006749;glutathione metabolic process;0.0273007067646453!GO:0008033;tRNA processing;0.0275324564804773!GO:0003756;protein disulfide isomerase activity;0.0275324564804773!GO:0016864;intramolecular oxidoreductase activity, transposing S-S bonds;0.0275324564804773!GO:0006007;glucose catabolic process;0.0282901377782645!GO:0051493;regulation of cytoskeleton organization and biogenesis;0.0286584581149127!GO:0033043;regulation of organelle organization and biogenesis;0.0286584581149127!GO:0008484;sulfuric ester hydrolase activity;0.029234001611565!GO:0000209;protein polyubiquitination;0.0296054042593344!GO:0051336;regulation of hydrolase activity;0.0296928302940295!GO:0031970;organelle envelope lumen;0.0298429670719222!GO:0005083;small GTPase regulator activity;0.0299724525347185!GO:0003684;damaged DNA binding;0.0306980924454986!GO:0006401;RNA catabolic process;0.0310098299001769!GO:0006904;vesicle docking during exocytosis;0.031851947066815!GO:0006519;amino acid and derivative metabolic process;0.0322553502434524!GO:0007041;lysosomal transport;0.0329865458929432!GO:0008538;proteasome activator activity;0.0330858198067383!GO:0018193;peptidyl-amino acid modification;0.0331661909709672!GO:0016584;nucleosome positioning;0.0338326565089519!GO:0043087;regulation of GTPase activity;0.0338326565089519!GO:0031300;intrinsic to organelle membrane;0.0340996317222296!GO:0008203;cholesterol metabolic process;0.0343795007310639!GO:0000096;sulfur amino acid metabolic process;0.0344120973475816!GO:0006607;NLS-bearing substrate import into nucleus;0.0346090052233858!GO:0030032;lamellipodium biogenesis;0.0348369341238667!GO:0031371;ubiquitin conjugating enzyme complex;0.035220665986953!GO:0006950;response to stress;0.0354446254052216!GO:0030508;thiol-disulfide exchange intermediate activity;0.0364869365241085!GO:0005819;spindle;0.0365475921555187!GO:0030149;sphingolipid catabolic process;0.0365475921555187!GO:0006767;water-soluble vitamin metabolic process;0.0366298626446332!GO:0006769;nicotinamide metabolic process;0.0366373767710421!GO:0065007;biological regulation;0.0371496901133747!GO:0006417;regulation of translation;0.0375432305374876!GO:0030911;TPR domain binding;0.038241018548984!GO:0031497;chromatin assembly;0.0387775354971031!GO:0045936;negative regulation of phosphate metabolic process;0.0395952490890256!GO:0022408;negative regulation of cell-cell adhesion;0.0396261463724761!GO:0009116;nucleoside metabolic process;0.0404525322595494!GO:0008637;apoptotic mitochondrial changes;0.0404525322595494!GO:0006458;'de novo' protein folding;0.0405436827335544!GO:0051084;'de novo' posttranslational protein folding;0.0405436827335544!GO:0006144;purine base metabolic process;0.0406009714260639!GO:0006405;RNA export from nucleus;0.0408390730781684!GO:0045187;regulation of circadian sleep/wake cycle, sleep;0.0418212255316328!GO:0004667;prostaglandin-D synthase activity;0.0418212255316328!GO:0050802;circadian sleep/wake cycle, sleep;0.0418212255316328!GO:0022410;circadian sleep/wake cycle process;0.0418212255316328!GO:0042749;regulation of circadian sleep/wake cycle;0.0418212255316328!GO:0005777;peroxisome;0.0419553704966658!GO:0042579;microbody;0.0419553704966658!GO:0006783;heme biosynthetic process;0.042542294988251!GO:0005092;GDP-dissociation inhibitor activity;0.0426419444155847!GO:0048144;fibroblast proliferation;0.0426419444155847!GO:0048145;regulation of fibroblast proliferation;0.0426419444155847!GO:0032507;maintenance of cellular protein localization;0.0428927833442511!GO:0043161;proteasomal ubiquitin-dependent protein catabolic process;0.0429714493906967!GO:0000287;magnesium ion binding;0.0429714493906967!GO:0001952;regulation of cell-matrix adhesion;0.0441137883985188!GO:0030031;cell projection biogenesis;0.0443970983483883!GO:0030503;regulation of cell redox homeostasis;0.0446261638253763!GO:0008234;cysteine-type peptidase activity;0.0446261638253763!GO:0005669;transcription factor TFIID complex;0.04492467849925!GO:0005874;microtubule;0.04492467849925!GO:0009081;branched chain family amino acid metabolic process;0.0451700618926784!GO:0006354;RNA elongation;0.0453589595719379!GO:0032906;transforming growth factor-beta2 production;0.0454447051797866!GO:0032909;regulation of transforming growth factor-beta2 production;0.0454447051797866!GO:0044452;nucleolar part;0.0457302086037287!GO:0045926;negative regulation of growth;0.0457312469516925!GO:0006984;ER-nuclear signaling pathway;0.0457372206809516!GO:0005062;hematopoietin/interferon-class (D200-domain) cytokine receptor signal transducer activity;0.0463179305319199!GO:0006518;peptide metabolic process;0.0466445379998019!GO:0008475;procollagen-lysine 5-dioxygenase activity;0.0466540185143445!GO:0001725;stress fiber;0.0467289757895987!GO:0032432;actin filament bundle;0.0467289757895987!GO:0006289;nucleotide-excision repair;0.0468816691704497!GO:0005581;collagen;0.0476938555418379!GO:0004563;beta-N-acetylhexosaminidase activity;0.0480626423833497!GO:0030865;cortical cytoskeleton organization and biogenesis;0.0483551080092194!GO:0048037;cofactor binding;0.0483746850798229!GO:0006733;oxidoreduction coenzyme metabolic process;0.0484484755478293!GO:0006302;double-strand break repair;0.048919363248227!GO:0007179;transforming growth factor beta receptor signaling pathway;0.0490905556596608!GO:0005758;mitochondrial intermembrane space;0.049259182811206!GO:0045334;clathrin-coated endocytic vesicle;0.049455617692365!GO:0032984;macromolecular complex disassembly;0.049455617692365!GO:0007021;tubulin folding;0.0497756558653948!GO:0015248;sterol transporter activity;0.0497756558653948!GO:0050178;phenylpyruvate tautomerase activity;0.0498273227654315
 |sample_id=11391
 |sample_note=
@@ Line 76: / Line 105: @@
 |sample_tissue=brain
 |top_motifs=TAL1_TCF{3,4,12}:1.81750057994;NR3C1:1.63375765397;TFAP4:1.44022423092;NKX3-1:1.40479404697;HSF1,2:1.22160590138;AIRE:1.17673295162;GLI1..3:1.09668816886;TEAD1:1.07143708582;SRF:1.02398890324;RXRA_VDR{dimer}:1.02049636549;HOX{A5,B5}:1.01411114318;EVI1:0.962734447409;GZF1:0.946794931988;MYBL2:0.879036421576;XBP1:0.870731418691;EBF1:0.8333020529;IKZF1:0.805375747959;SOX17:0.782578060573;NKX2-1,4:0.757434280851;ATF6:0.74603025356;UFEwm:0.688570139893;TLX1..3_NFIC{dimer}:0.684887621036;GTF2A1,2:0.66096439164;TEF:0.642721270467;MAFB:0.639785954017;EN1,2:0.639631720733;SP1:0.639600568087;TFCP2:0.591899082833;NKX2-2,8:0.59051616557;NANOG{mouse}:0.582100282111;ZNF238:0.578114071497;MAZ:0.573506321786;NR6A1:0.559627395295;NFATC1..3:0.558860847777;PAX1,9:0.54371431265;bHLH_family:0.532456777546;NFE2L1:0.515481087813;PATZ1:0.514666327744;TFAP2{A,C}:0.501803803463;ESR1:0.4919388358;RXR{A,B,G}:0.489605080666;TBX4,5:0.468245430695;SPZ1:0.423881779359;PAX5:0.414784649211;TOPORS:0.402456398388;HMGA1,2:0.390826399978;HIC1:0.387426530722;HOXA9_MEIS1:0.386266545989;LHX3,4:0.385471250212;HMX1:0.384092989115;POU3F1..4:0.381566525403;ADNP_IRX_SIX_ZHX:0.374766239057;NFE2L2:0.361476655008;GFI1B:0.36106070004;SREBF1,2:0.346843949627;ALX4:0.341369811405;CDC5L:0.338004959901;GTF2I:0.336613170792;ZBTB6:0.326226289045;ESRRA:0.321215906046;MTE{core}:0.3178787243;TP53:0.317176292285;MZF1:0.311029253009;NR5A1,2:0.283929983336;KLF4:0.275226615142;AHR_ARNT_ARNT2:0.274107839376;PPARG:0.270273207679;TFAP2B:0.216414507371;ZIC1..3:0.192403684245;ZNF384:0.191717180401;HNF4A_NR2F1,2:0.158522398737;HLF:0.123623753388;ONECUT1,2:0.122657154977;HNF1A:0.116460683418;XCPE1{core}:0.112376440706;STAT5{A,B}:0.106777387901;POU1F1:0.1038191554;NHLH1,2:0.0923708837062;ZNF148:0.0894416793985;ARID5B:0.0620895889956;MYFfamily:0.057114486233;PRRX1,2:0.0506341326378;STAT2,4,6:0.0502144717288;TBP:0.0448497883786;NKX2-3_NKX2-5:0.043580311549;NR1H4:0.0332244341843;ZBTB16:0.0320560248156;HES1:0.028576227102;TLX2:0.0159794347222;IRF1,2:-0.0149529609611;ALX1:-0.027612638943;SMAD1..7,9:-0.0423286307804;HIF1A:-0.0556627650096;AR:-0.0636734275742;EGR1..3:-0.0661992967403;CDX1,2,4:-0.0682360435563;DBP:-0.0743634632723;ZNF423:-0.0835868757431;GATA4:-0.08518643531;ZNF143:-0.0864068564436;SOX5:-0.0929090370297;STAT1,3:-0.0981259045621;ELK1,4_GABP{A,B1}:-0.121695781926;FOXL1:-0.134943959867;PAX3,7:-0.139129550649;GFI1:-0.146211321347;BACH2:-0.147426045626;ZFP161:-0.153606441518;YY1:-0.156517043306;GCM1,2:-0.160946919948;FOSL2:-0.164160309553;HOX{A4,D4}:-0.164289690968;IRF7:-0.165330888454;HAND1,2:-0.165637658551;TFDP1:-0.172072129551;PAX2:-0.192099113294;NRF1:-0.198439001614;PRDM1:-0.221966703854;NFIX:-0.223664657108;NKX3-2:-0.226199716176;FOS_FOS{B,L1}_JUN{B,D}:-0.257501962972;RUNX1..3:-0.258427771953;ETS1,2:-0.268228257398;PAX6:-0.268713522879;REST:-0.27335003971;NFE2:-0.292935334994;MEF2{A,B,C,D}:-0.299408774012;CEBPA,B_DDIT3:-0.305523779182;NFKB1_REL_RELA:-0.317553516412;LMO2:-0.33883448353;NKX6-1,2:-0.348057050218;MED-1{core}:-0.348848639642;NFY{A,B,C}:-0.360831674955;FOXP3:-0.376081682535;CRX:-0.377486503383;JUN:-0.378248319962;FOX{I1,J2}:-0.382873852199;POU5F1:-0.400819279177;HOX{A6,A7,B6,B7}:-0.422770316498;ATF2:-0.434216667443;LEF1_TCF7_TCF7L1,2:-0.434361177098;PAX8:-0.434794472107;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.435048146763;RORA:-0.44318494723;TGIF1:-0.448519974314;FOXD3:-0.463129291696;RREB1:-0.467092375332;ELF1,2,4:-0.474436319745;MTF1:-0.478067932043;FOXA2:-0.486289399685;FOXM1:-0.486773582034;RFX1:-0.488844477669;DMAP1_NCOR{1,2}_SMARC:-0.498494135318;SPIB:-0.509178289762;BREu{core}:-0.515319218819;GATA6:-0.524090567669;FOXN1:-0.537326514152;NFIL3:-0.549241709892;OCT4_SOX2{dimer}:-0.549264378257;MYB:-0.584642325698;NANOG:-0.586791104051;RBPJ:-0.592853028707;SNAI1..3:-0.605051739;FOX{D1,D2}:-0.608864542659;SPI1:-0.609121557951;FOXP1:-0.614241867229;FOX{F1,F2,J1}:-0.634407928243;ATF5_CREB3:-0.639161696697;FOXO1,3,4:-0.668677278048;PAX4:-0.668763081865;POU6F1:-0.668880594379;CREB1:-0.703903780118;RFX2..5_RFXANK_RFXAP:-0.723122576691;E2F1..5:-0.743812799403;CUX2:-0.803965474454;SOX2:-0.809258405757;PITX1..3:-0.80929513057;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.812140720061;HBP1_HMGB_SSRP1_UBTF:-0.813618006839;EP300:-0.831045431823;ATF4:-0.841801041789;PBX1:-0.891706700679;VSX1,2:-0.896957312555;ZEB1:-0.89767098106;IKZF2:-0.939015194095;SOX{8,9,10}:-0.943287163259;BPTF:-0.953133311634;MYOD1:-1.0501701313;POU2F1..3:-1.05126951475;T:-1.10111829843;FOXQ1:-1.1115118833;PDX1:-1.37477207495
+|xref=
+|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11391-118C5;search_select_hide=table117:FF:11391-118C5
 }}

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FF:11391-118C5: Difference between revisions

From FANTOM5_SSTAR

Latest revision as of 17:57, 4 June 2020

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	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0