FF:10066-101I3: Difference between revisions

Latest revision as of 12:19, 3 June 2020

Name:	skeletal muscle, fetal, donor1
Species:	Human (Homo sapiens)
Library ID:	CNhs11776
Sample type:	tissues
Genomic View:	UCSC
RefEX:	Specific genes
FANTOM CAT:	1, 2
CAGEd-oPOSSUM:	link
ZENBU report :	link

Additional information

Sample information

strain	NA
tissue	skeletal muscle
dev stage	22 weeks fetus
sex	male
age	NA
cell type	CELL MIXTURE - tissue sample
cell line	NA
company	Biochain
collaboration	FANTOM5 OSC CORE (contact: Al Forrest)
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	A503105
catalog number	Cat:RtHFN: Skeletal musc
sample type	total RNA
extraction protocol (Details)	OP-RNA-extraction-totalRNA-TRIzol-isopropanol-v1.0

CAGE Accession numbers

Method		Sample accession id
CAGE		SAMD00005384

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs11776		CAGE		DRX008721		DRR009593

Accession ID Hg19

Library id		BAM		CTSS
CNhs11776		DRZ001018		DRZ002403

Accession ID Hg38

Library id		BAM		CTSS
CNhs11776		DRZ012368		DRZ013753

Download raw sequence, BAM & CTSS

Hg19

Fasta	BAM	CTSS
download	download	donwload

Hg38

BAM	CTSS
download	donwload

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

Coexpression cluster	score
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral	0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate	0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural	0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial	0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel	0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS	0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils	0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural	0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis	0.0408
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy	0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood	0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate	0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma	-0.136
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial	0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic	0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat	0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal	0
C113-thyroid-throat-lung-lymph-small-colon-trachea	0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma	0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus	0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea	0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal	0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula	0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD19	0
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils	0
C120-immature-salivary-tongue-skin-cervical-CD14-CD34	0
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B	0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal	0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils	0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte	0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus	0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain	0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil	0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP	0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small	0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD4	0
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar	0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin	0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived	0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma	0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis	1.387
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum	0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal	0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic	0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal	0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal	0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen	0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen	0.334
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B	0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair	0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast	0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis	0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal	0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell	0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral	0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal	0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum	0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue	0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small	0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast	0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung	0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular	0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate	0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid	0
C156-plasma-splenic-hereditary-B-large-xeroderma-b	0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea	0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen	0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal	0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain	0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral	0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta	0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon	0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal	0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma	0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial	0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung	0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD4	0
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral	0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma	0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage	0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet	0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye	0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes	1.619
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose	0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils	0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural	0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19	-0.0705
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous	0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus	0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil	0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood	0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle	0.381
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar	0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute	0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt	0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid	0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis	0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid	0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage	0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat	0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen	0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma	0
C190-colon-small-rectum-duodenum-appendix-temporal-oral	0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic	0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD4	0
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD14	0
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar	0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal	0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial	0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival	0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes	0.334
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma	0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast	0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat	0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed	0.288
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall	0
C202-salivary-skin-penis-tongue-uterus-cervical-immature	0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic	0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD34	0
C205-mycosis-cord-hairy-xeroderma-CD4-B-b	0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary	0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte	0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous	0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen	0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic	0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil	0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney	0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD34	0
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral	0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain	0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature	0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD34	0
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital	0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary	0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum	0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD19	0
C220-Adipocyte-mature-left-breast-skin-liver-adipose	0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular	0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte	0.22
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte	0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal	0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal	0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal	0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue	0.901
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult	0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart	0.0584
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD14	0
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung	0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis	0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum	0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF7	0
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma	0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas	0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma	0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial	0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell	0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy	0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral	0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal	0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus	0.5
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach	0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing	0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage	0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic	0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory	0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital	0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast	0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial	0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall	0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD4	0
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue	0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma	0.334
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum	0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris	0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast	0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla	0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral	0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric	0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing	0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole	0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood	0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal	0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms	0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil	0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute	0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8	0
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast	0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear	0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate	0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD4	0
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung	0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth	0
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum	0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil	0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast	0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte	0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal	0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal	0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma	0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory	0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial	0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic	0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD4	0
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small	-0.0865
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat	0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular	0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus	0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic	0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial	0.621
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal	0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal	0.334
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left	0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart	0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature	0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea	0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal	1.035
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD34	0
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral	0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte	0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed	0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral	0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital	0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood	0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala	0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal	0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils	0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic	0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid	0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole	0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus	0.751
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea	0.901
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory	0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen	0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile	0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula	0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt	0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea	0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms	0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD133	0
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus	0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small	0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal	0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon	0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder	0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature	0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS	0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel	0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix	0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus	0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma	0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas	0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma	0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas	0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma	0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary	0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature	0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma	0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue	0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural	0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H9	0
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic	0.96
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature	0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical	0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b	0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph	0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute	0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic	0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils	0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus	0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung	0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma	0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK	0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast	0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue	0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate	0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left	0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal	0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy	0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral	0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell	0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD8	0
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea	0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal	0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD34	0
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast	0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid	0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD34	0
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic	0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon	0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma	0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma	0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic	0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived	0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic	0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left	0.334
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen	0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair	0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole	0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular	0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma	0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid	0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix	0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain	0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole	0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs11776

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	0.0132
MA0003.1	MA0003.1	0.161
MA0004.1	MA0004.1	0.106
MA0006.1	MA0006.1	0.679
MA0007.1	MA0007.1	0.266
MA0009.1	MA0009.1	0.0876
MA0014.1	MA0014.1	0.157
MA0017.1	MA0017.1	0.625
MA0018.2	MA0018.2	0.00649
MA0019.1	MA0019.1	0.987
MA0024.1	MA0024.1	0.177
MA0025.1	MA0025.1	0.0151
MA0027.1	MA0027.1	0.815
MA0028.1	MA0028.1	7.18225e-8
MA0029.1	MA0029.1	0.838
MA0030.1	MA0030.1	0.0461
MA0031.1	MA0031.1	0.00421
MA0035.2	MA0035.2	0.492
MA0038.1	MA0038.1	0.57
MA0039.2	MA0039.2	0.00708
MA0040.1	MA0040.1	0.8
MA0041.1	MA0041.1	0.206
MA0042.1	MA0042.1	0.806
MA0043.1	MA0043.1	1.41417e-4
MA0046.1	MA0046.1	0.0415
MA0047.2	MA0047.2	0.0522
MA0048.1	MA0048.1	0.0504
MA0050.1	MA0050.1	1.16836e-4
MA0051.1	MA0051.1	0.0013
MA0052.1	MA0052.1	1.0344e-23
MA0055.1	MA0055.1	4.9035e-4
MA0057.1	MA0057.1	0.917
MA0058.1	MA0058.1	0.0155
MA0059.1	MA0059.1	0.0835
MA0060.1	MA0060.1	0.00836
MA0061.1	MA0061.1	1.1361e-4
MA0062.2	MA0062.2	4.03688e-15
MA0065.2	MA0065.2	0.972
MA0066.1	MA0066.1	0.51
MA0067.1	MA0067.1	0.0575
MA0068.1	MA0068.1	0.0406
MA0069.1	MA0069.1	0.458
MA0070.1	MA0070.1	0.792
MA0071.1	MA0071.1	0.159
MA0072.1	MA0072.1	0.534
MA0073.1	MA0073.1	0.408
MA0074.1	MA0074.1	0.541
MA0076.1	MA0076.1	1.03972e-9
MA0077.1	MA0077.1	0.75
MA0078.1	MA0078.1	0.534
MA0079.2	MA0079.2	0.46
MA0080.2	MA0080.2	5.96609e-8
MA0081.1	MA0081.1	0.015
MA0083.1	MA0083.1	0.00296
MA0084.1	MA0084.1	0.596
MA0087.1	MA0087.1	0.351
MA0088.1	MA0088.1	0.393
MA0090.1	MA0090.1	0.225
MA0091.1	MA0091.1	4.34533e-5
MA0092.1	MA0092.1	0.661
MA0093.1	MA0093.1	0.0653
MA0099.2	MA0099.2	1.08586e-18
MA0100.1	MA0100.1	0.0944
MA0101.1	MA0101.1	1.32945e-4
MA0102.2	MA0102.2	9.56537e-4
MA0103.1	MA0103.1	0.2
MA0104.2	MA0104.2	0.00342
MA0105.1	MA0105.1	0.00233
MA0106.1	MA0106.1	0.00293
MA0107.1	MA0107.1	2.16835e-4
MA0108.2	MA0108.2	1.84918e-13
MA0111.1	MA0111.1	0.581
MA0112.2	MA0112.2	0.0119
MA0113.1	MA0113.1	0.362
MA0114.1	MA0114.1	0.797
MA0115.1	MA0115.1	0.876
MA0116.1	MA0116.1	0.0263
MA0117.1	MA0117.1	0.0797
MA0119.1	MA0119.1	0.258
MA0122.1	MA0122.1	0.294
MA0124.1	MA0124.1	0.347
MA0125.1	MA0125.1	0.374
MA0131.1	MA0131.1	0.173
MA0135.1	MA0135.1	0.402
MA0136.1	MA0136.1	2.289e-14
MA0137.2	MA0137.2	0.0741
MA0138.2	MA0138.2	0.147
MA0139.1	MA0139.1	0.0873
MA0140.1	MA0140.1	0.607
MA0141.1	MA0141.1	0.408
MA0142.1	MA0142.1	0.0182
MA0143.1	MA0143.1	0.796
MA0144.1	MA0144.1	0.285
MA0145.1	MA0145.1	0.187
MA0146.1	MA0146.1	0.802
MA0147.1	MA0147.1	0.00755
MA0148.1	MA0148.1	0.0399
MA0149.1	MA0149.1	0.0559
MA0150.1	MA0150.1	2.46564e-7
MA0152.1	MA0152.1	0.0285
MA0153.1	MA0153.1	0.799
MA0154.1	MA0154.1	0.137
MA0155.1	MA0155.1	0.0038
MA0156.1	MA0156.1	1.57604e-16
MA0157.1	MA0157.1	0.0116
MA0159.1	MA0159.1	0.915
MA0160.1	MA0160.1	0.117
MA0162.1	MA0162.1	0.348
MA0163.1	MA0163.1	0.752
MA0164.1	MA0164.1	0.796
MA0258.1	MA0258.1	0.00511
MA0259.1	MA0259.1	0.275

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs11776

Novel motif	Logo	P-value
1	1	0.895
10	10	0.19
100	100	0.583
101	101	0.375
102	102	0.565
103	103	0.271
104	104	0.953
105	105	0.883
106	106	0.272
107	107	0.0389
108	108	0.073
109	109	0.0451
11	11	0.637
110	110	0.492
111	111	0.698
112	112	0.738
113	113	1.02994e-5
114	114	0.188
115	115	0.0739
116	116	0.0541
117	117	0.0206
118	118	0.0248
119	119	0.214
12	12	0.981
120	120	0.746
121	121	0.152
122	122	0.0153
123	123	0.422
124	124	0.0699
125	125	0.389
126	126	0.743
127	127	0.39
128	128	0.0819
129	129	0.997
13	13	0.641
130	130	0.662
131	131	0.841
132	132	0.0627
133	133	0.476
134	134	0.331
135	135	0.237
136	136	0.136
137	137	0.86
138	138	0.8
139	139	0.148
14	14	0.512
140	140	0.907
141	141	0.434
142	142	0.821
143	143	0.00692
144	144	0.166
145	145	0.753
146	146	0.405
147	147	0.0449
148	148	0.986
149	149	0.128
15	15	0.178
150	150	0.917
151	151	0.568
152	152	0.456
153	153	0.189
154	154	0.987
155	155	0.352
156	156	0.435
157	157	0.41
158	158	0.498
159	159	0.795
16	16	0.473
160	160	0.244
161	161	0.478
162	162	0.0718
163	163	0.0175
164	164	0.465
165	165	0.416
166	166	0.0337
167	167	0.107
168	168	0.766
169	169	0.066
17	17	0.962
18	18	0.264
19	19	0.00693
2	2	0.138
20	20	0.0181
21	21	0.226
22	22	0.564
23	23	0.629
24	24	0.0562
25	25	0.533
26	26	0.602
27	27	0.958
28	28	0.219
29	29	0.215
3	3	0.439
30	30	0.175
31	31	0.355
32	32	4.31629e-9
33	33	0.255
34	34	0.121
35	35	0.823
36	36	0.124
37	37	0.224
38	38	0.854
39	39	0.401
4	4	0.358
40	40	0.634
41	41	0.549
42	42	0.225
43	43	0.899
44	44	0.0523
45	45	0.314
46	46	0.799
47	47	0.929
48	48	0.825
49	49	0.781
5	5	0.379
50	50	0.646
51	51	0.809
52	52	0.244
53	53	0.823
54	54	0.451
55	55	0.359
56	56	0.734
57	57	0.703
58	58	0.902
59	59	0.891
6	6	0.735
60	60	0.546
61	61	0.356
62	62	0.68
63	63	0.588
64	64	0.956
65	65	0.511
66	66	0.0718
67	67	0.388
68	68	0.0844
69	69	0.256
7	7	0.911
70	70	0.996
71	71	0.267
72	72	0.317
73	73	0.485
74	74	0.296
75	75	0.0545
76	76	0.174
77	77	0.343
78	78	0.509
79	79	0.047
8	8	0.425
80	80	0.68
81	81	0.632
82	82	0.306
83	83	0.371
84	84	0.495
85	85	0.107
86	86	0.444
87	87	0.00564
88	88	0.512
89	89	0.265
9	9	0.816
90	90	0.52
91	91	0.0664
92	92	0.911
93	93	0.717
94	94	0.195
95	95	0.0015
96	96	0.762
97	97	0.829
98	98	0.792
99	99	0.0154

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs11776

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
EFO:0002091 biological replicate
FF:0010066 human skeletal muscle - fetal sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

UBERON: Anatomy
0000468 (multi-cellular organism)
0000922 (embryo)
0001134 (skeletal muscle tissue)
0000479 (tissue)
0004120 (mesoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0002036 (striated muscle tissue)
0002385 (muscle tissue)
0010317 (germ layer / neural crest derived structure)
0001015 (musculature)
0002204 (musculoskeletal system)
0000383 (musculature of body)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0000999 (fetal tissue sample)
0000004 (tissue sample)
0010066 (human skeletal muscle - fetal sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
UBERON:0002532 (epiblast (generic))
UBERON:0006603 (presumptive mesoderm)
UBERON:0003104 (mesenchyme)
UBERON:0010316 (germ layer / neural crest)

@@ Line 1: / Line 1: @@
 {{f5samples
-|ancestors_in_anatomy_facet=UBERON:0000061,UBERON:0000119,UBERON:0000383,UBERON:0000465,UBERON:0000467,UBERON:0000468,UBERON:0000475,UBERON:0000479,UBERON:0000480,UBERON:0000481,UBERON:0000483,UBERON:0000486,UBERON:0000490,UBERON:0000914,UBERON:0000922,UBERON:0000923,UBERON:0000926,UBERON:0001015,UBERON:0001062,UBERON:0001134,UBERON:0002036,UBERON:0002050,UBERON:0002204,UBERON:0002329,UBERON:0002385,UBERON:0002532,UBERON:0003059,UBERON:0003077,UBERON:0003082,UBERON:0003104,UBERON:0004120,UBERON:0004290,UBERON:0005291,UBERON:0005423,UBERON:0009142
+|DRA_sample_Accession=CAGE@SAMD00005384
+|accession_numbers=CAGE;DRX008721;DRR009593;DRZ001018;DRZ002403;DRZ012368;DRZ013753
+|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000922,UBERON:0001134,UBERON:0000479,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0002036,UBERON:0002385,UBERON:0010317,UBERON:0001015,UBERON:0002204,UBERON:0000383
 |ancestors_in_cell_lineage_facet=
 |ancestors_in_disease_facet=
+|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000101,FF:0000001,FF:0000999,FF:0000004,FF:0010066
 |comment=
 |created_by=
 |creation_date=
+|data_phase=2
+|datafreeze_phase=2
 |def=
 |expression_enrichment_score=chr19:46801639..46801699,+!p1@HIF3A!2.48!301.55!HIF3A;;chr19:46800289..46800327,+!p2@HIF3A!2.36!229.64!HIF3A;;chr1:203055129..203055147,-!p1@MYOG!2.25!175.13!MYOG;;chr15:42749722..42749739,-!p2@ZFP106!2.23!294.59!ZFP106;;chr1:40105299..40105326,-!p1@HEYL!2.09!120.62!HEYL;;chr19:57352087..57352102,-!p1@PEG3,p1@ZIM2!2.04!109.02!PEG3;;chr9:20382446..20382493,-!p4@MLLT3!1.91!81.19!MLLT3;;chr10:131762504..131762555,-!p1@EBF3!1.86!71.91!EBF3;;chr8:25902876..25902936,-!p1@EBF2!1.86!70.75!EBF2;;chr12:81110684..81110700,+!p1@MYF5!1.80!61.47!MYF5;;chr2:24714729..24714761,+!p1@NCOA1!1.78!59.15!NCOA1;;chr20:62680984..62680999,-!p1@SOX18!1.72!67.27!SOX18;;chr1:119530493..119530572,-!p1@TBX15!1.72!51.03!TBX15;;chr2:5832508..5832524,+!p1@SOX11!1.70!48.71!SOX11;;chr9:1050331..1050363,+!p1@DMRT2!1.69!47.55!DMRT2;;chr22:19748231..19748317,+!p1@TBX1!1.68!46.39!TBX1;;chr19:2867325..2867348,+!p1@ZNF556!1.68!46.39!ZNF556;;chr11:125034640..125034655,+!p1@PKNOX2!1.65!44.07!PKNOX2;;chr8:10588010..10588030,-!p1@SOX7!1.64!42.91!SOX7;;chr7:15726296..15726315,-!p1@MEOX2!1.62!40.59!MEOX2;;chr8:106330656..106330684,+!p1@ZFPM2!1.59!96.26!ZFPM2;;chr12:81101404..81101421,+!p1@MYF6!1.59!38.27!MYF6;;chr14:61116183..61116208,-!p1@SIX1!1.55!125.26!SIX1;;chr5:158526917..158526932,-!p1@EBF1!1.51!75.39!EBF1;;chr20:50179368..50179392,-!p2@NFATC2!1.50!39.43!NFATC2;;chr17:1959369..1959388,+!p2@HIC1!1.49!76.55!HIC1;;chr1:165414227..165414242,-!p2@RXRG!1.48!29.00!RXRG;;chr21:39870339..39870443,-!p1@ERG!1.46!27.84!ERG;;chr16:1031762..1031781,+!p1@SOX8!1.46!27.84!SOX8;;chr20:30433396..30433414,-!p1@FOXS1!1.44!26.68!FOXS1;;chr8:55370487..55370503,+!p1@SOX17!1.44!26.68!SOX17;;chr2:19558373..19558392,-!p1@OSR1!1.43!69.59!OSR1;;chr1:170699295..170699343,+!p35@PRRX1!1.42!25.52!PRRX1;;chr1:214161272..214161322,+!p1@PROX1!1.40!33.63!PROX1;;chr12:54779511..54779577,-!p5@ZNF385A!1.40!24.36!ZNF385A;;chr6:126070769..126070801,+!p1@HEY2!1.38!26.68!HEY2;;chr13:72441315..72441454,-!p1@DACH1!1.36!42.91!DACH1;;chr11:17741254..17741282,+!p2@MYOD1!1.36!22.04!MYOD1;;chr17:6926362..6926377,+!p1@BCL6B!1.36!22.04!BCL6B;;chr7:15726243..15726293,-!p2@MEOX2!1.36!22.04!MEOX2;;chr7:27205136..27205164,-!p1@HOXA9!1.36!22.04!HOXA9;;chr15:57511609..57511651,+!p2@TCF12!1.34!34.79!TCF12;;chr16:30389131..30389144,+!p16@ZNF48!1.34!20.88!ZNF48;;chr11:16629261..16629284,-!p1@SOX6!1.34!20.88!SOX6;;chr12:81101472..81101483,+!p2@MYF6!1.34!20.88!MYF6;;chr1:10856639..10856662,-!p2@CASZ1!1.29!18.56!CASZ1;;chr16:79634624..79634642,-!p1@MAF!1.28!69.59!MAF;;chr19:46843663..46843674,+!p8@HIF3A!1.26!17.40!HIF3A;;chr12:125003087..125003141,-!p4@NCOR2!1.24!20.88!NCOR2;;chr8:106330696..106330719,+!p2@ZFPM2!1.24!20.88!ZFPM2;;chr1:170632285..170632309,+!p1@PRRX1!1.24!18.56!PRRX1;;chrY:21906594..21906622,-!p1@KDM5D!1.21!15.08!KDM5D;;chr2:119605214..119605230,-!p1@EN1!1.21!15.08!EN1;;chr18:22932080..22932170,-!p1@ZNF521!1.19!60.31!ZNF521;;chr16:79634595..79634620,-!p2@MAF!1.18!25.52!MAF;;chr2:145277882..145277967,-!p3@ZEB2!1.18!24.36!ZEB2;;chr1:23696308..23696339,-!p2@ZNF436!1.17!29.00!ZNF436;;chr16:30389152..30389161,+!p23@ZNF48!1.17!13.92!ZNF48;;chr7:15726176..15726191,-!p3@MEOX2!1.17!13.92!MEOX2;;chr12:52437488..52437507,+!p2@NR4A1!1.17!13.92!NR4A1;;chr13:72441074..72441172,-!p2@DACH1!1.17!13.92!DACH1;;chr6:144329384..144329405,-!p1@PLAGL1!1.16!154.26!PLAGL1;;chr17:53342311..53342400,+!p1@HLF!1.15!15.08!HLF;;chr15:96873984..96873999,+!p3@NR2F2!1.14!92.79!NR2F2;;chr12:3069037..3069119,+!p2@TEAD4!1.14!44.07!TEAD4;;chr7:150945865..150945896,-!p4@SMARCD3!1.14!12.76!SMARCD3;;chr7:27196217..27196246,-!p2@HOXA7!1.14!12.76!HOXA7;;chr3:25470156..25470227,+!p2@RARB!1.14!12.76!RARB;;chr16:85932760..85932775,+!p1@IRF8!1.14!12.76!IRF8;;chr7:150945754..150945789,-!p2@SMARCD3!1.13!38.27!SMARCD3;;chr16:54320675..54320715,-!p1@IRX3!1.13!26.68!IRX3;;chr7:150946015..150946070,-!p3@SMARCD3!1.12!26.68!SMARCD3;;chr6:85474299..85474324,-!p1@TBX18!1.12!22.04!TBX18;;chrX:131623044..131623089,-!p1@MBNL3!1.11!49.87!MBNL3;;chr10:104001289..104001310,-!p2@PITX3!1.10!11.60!PITX3;;chr12:54378923..54378966,+!p1@HOXC10!1.10!11.60!HOXC10;;chr1:18957333..18957375,+!p1@PAX7!1.10!11.60!PAX7;;chr1:18957605..18957623,+!p3@PAX7!1.10!11.60!PAX7;;chr5:158527104..158527135,-!p4@EBF1!1.10!11.60!EBF1;;chr7:27192185..27192209,-!p1@HOXA3!1.10!11.60!HOXA3;;chr8:144512897..144512903,-!p1@MAFA!1.10!11.60!MAFA;;chr8:77593474..77593612,+!p1@ZFHX4!1.09!47.55!ZFHX4;;chr3:12330560..12330579,+!p1@PPARG!1.08!12.76!PPARG;;chr2:145277640..145277771,-!p1@ZEB2!1.07!143.82!ZEB2;;chr10:114709999..114710031,+!p1@TCF7L2!1.06!247.04!TCF7L2;;chr11:125034605..125034636,+!p2@PKNOX2!1.06!10.44!PKNOX2;;chr11:16629205..16629216,-!p16@SOX6!1.06!10.44!SOX6;;chr12:3068668..3068689,+!p7@TEAD4!1.06!10.44!TEAD4;;chr9:124991204..124991246,-!p1@LHX6!1.06!10.44!LHX6;;chr5:88119715..88119757,-!p11@MEF2C!1.06!10.44!MEF2C;;chr7:100065686..100065701,-!p2@TSC22D4!1.06!10.44!TSC22D4;;chr1:151804244..151804310,-!p1@RORC!1.06!10.44!RORC;;chr1:18958008..18958023,+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+|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001134;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002385
+|ffid_belonging_in_development=UBERON:0002532,UBERON:0006603,UBERON:0003104,UBERON:0010316
 |fonse_cell_line=
 |fonse_cell_line_closure=
@@ Line 35: / Line 42: @@
 |fonse_treatment_closure=
 |has_quality=
+|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/skeletal%2520muscle%252c%2520fetal%252c%2520donor1.CNhs11776.10066-101I3.hg19.nobarcode.bam
+|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/skeletal%2520muscle%252c%2520fetal%252c%2520donor1.CNhs11776.10066-101I3.hg19.ctss.bed.gz
+|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/skeletal%2520muscle%252c%2520fetal%252c%2520donor1.CNhs11776.10066-101I3.hg19.nobarcode.rdna.fa.gz
+|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.tissue.hCAGE/skeletal%2520muscle%252c%2520fetal%252c%2520donor1.CNhs11776.10066-101I3.hg38.nobarcode.bam
+|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.tissue.hCAGE/skeletal%2520muscle%252c%2520fetal%252c%2520donor1.CNhs11776.10066-101I3.hg38.nobarcode.ctss.bed.gz
 |id=FF:10066-101I3
-|is_a=EFO:0002091;;FF:0000004;;FF:0000210;;FF:0010066
+|is_a=EFO:0002091;;FF:0010066
+|is_obsolete=
+|library_id=CNhs11776
+|library_id_phase_based=2:CNhs11776
+|microRNAs=
+|microRNAs_nn=
+|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10066
+|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10066
 |name=skeletal muscle, fetal, donor1
 |namespace=FANTOM5
@@ Line 42: / Line 61: @@
 |profile_cagescan=,,,
 |profile_hcage=CNhs11776,LSID820,release009,COMPLETED
-|profile_rnaseq=,,,
+|profile_rnaseq=
 |profile_srnaseq=,,,
+|refex=http://refex.dbcls.jp/genelist.php?lang
+|repeat_enrich_byfamily=0,0,0,0,0,0.959932976453363,0,-0.160318030086386,0.521089531926469,0.373861910965175,0.680182459517783,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.153323010348428,0,0,0,0,0,1.13851391479937,0,0,1.04074740966293,0,0,0,0,0,0,0,0,0,0,0,0,0.0922374985290843,0.60358693249777,0,0,0,0,0,0,0,-0.0242150211128343,0,0,0,0.334416438693572,0,0.0516972425753374,0.334416438693572,0.803859954925144,0,0,-0.097343627213097,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0824548174527649,0.314234426539237,0,0,0.0207500093923074,0.295630690705092,0.123219035997703,0,0.334416438693572,0,0,-0.0980353512377064,0.787287060254192,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.164171172040773,0.521089531926469,0,0,0.219675287918307,0.225363232408266,0,0,0.334416438693572,0,0,0
+|repeat_enrich_byname=0,0,0,0,-0.0980353512377064,0,0,0,0,0,0,0,0,0.334416438693572,0,0,0.585270774961417,0.0210734443947065,0.177137824406681,-0.143515142523472,0.167208219346786,0,-0.260070867562785,0,0.334416438693572,0,0,0.334416438693572,0,0,0,0,0.206296571741007,0,0.600811491569374,0,0,0,0,0,0.794834348043728,0,-0.0070498418027237,0.266072177616204,0,0,0,0,-0.00969590337108998,0,0.400210048132728,-0.0827201683234173,0.529610355065232,0.570859802382118,-0.04680465889238,0,0,0,-0.0270584091518817,-0.00644852034106846,0,0,0.0454283675949122,0.19426135302336,0,0,1.58108951667902,1.05836261746729,0.502710424645255,0.106768477449915,0,0,0,0,0,0,0,0,0,0,0,0,0,0.435326774104694,-0.326988596678969,0,0,0,0,0.0737750052076304,0.443685875941947,0.00926077653309053,0.459163494290415,0.0647844622087113,0.218347967327445,0.282025704101879,0,0.0320267116836589,0.350512038444188,0.0993737188215535,0.295630690705092,-0.147401849371139,0.769951256903516,0,0.540696354611806,0.553708383393576,0.200597420732019,-0.0558144087212094,0.280586800860692,0.36269525888677,0.0510779652571738,0,0,0.332085827214822,0.13570852893032,0,0,-0.155698275783201,-0.169423861363531,0.182252057219278,0.356901390754316,0.106933594549669,-0.270146796608016,1.01883008901062,0.063653079029874,0.103274380533092,0.73787082750431,0.0713406595266727,0.959932976453363,0.133081349627775,0.0130931807671886,0.0465375431396591,0.216623477068302,0,0.574385155656307,-0.0683442610773682,0,0.372052477545217,0.361318018436925,0.334416438693572,0,0.322075085296338,0,0,0,0,0.521089531926469,-0.662321651651404,-0.539492143030166,0.418368481603144,0.152609174054967,0.0753228197779345,0,0.182680407874095,0,0.294609329420993,0.257888320651819,0,0.20827626734223,0,0.04582428782838,-0.175572337021645,0.0175412926146163,-0.0879783666981653,-0.0584468268118252,0.0207500093923074,0.0428412914177129,0.557919620675389,0.043509785456755,0.191196248595412,-0.0881268324752877,0.144673236500312,0.076388225934983,-0.158408599695056,0.179706787084135,0.167692038938467,0.334416438693572,-0.12058631833259,0.751221943168039,0.200592120256507,0,0.131964262384949,0.66578713327544,0.619073242886601,-0.260594243244258,0,0.578916980845363,0.574285071931835,0.130876906888703,0.0620320655215917,0.120384309012462,0.334416438693572,0.600854859833399,0.314234426539237,0.281169813061542,-0.138989456679195,0,0.0423694918573249,0,0,0.139626325361031,0.0989404009291834,0,0.21253240719688,0.223246736033585,0.496090537746841,0.218445365258638,0.334416438693572,0,0.670623285721072,0.23737377370274,0.521089531926469,0.90347595729077,0,0.518770678860486,0.0810900972068164,-0.00782009348232505,1.4048332521414,0,0,-0.177527765965176,0.334416438693572,0.169589707379811,0,0,-0.249881296598824,0,0,0.416224825123491,0,0.097627110705746,0,0,0,0,0.115357913410859,0,0.0578003446604944,0.359000162070503,-0.0204168915228758,0.521089531926469,-0.29716045529642,0,0,0,0,0,0.100229474565234,0.0829364496767641,0.521089531926469,0.0726190083839049,0.193171916353996,-0.12301741567642,0,0,0,0,0.118693036140097,0.131179876598848,0,-0.131862706497632,0,0,0,0.334416438693572,-0.0861409897892114,0,0,0,0,-0.057730457053664,0.0945505849737104,0,0,0,0.823352177340345,0,0,0,0.0288569016987906,-0.322783671503397,0,0,0,0,0.0379331209669229,-0.0815818795468414,0,-0.216183290825591,-0.376016048006061,0.183909857394697,0,0.651224043158689,1.02995579018471,0,0,-0.284722378465209,0,0.751221943168039,0.146283443400669,0,0,0,0,0,0,0.306775019526713,0,0,0,0,0,0,0,0,0,0,0,-0.0336142203586054,-0.0922240566585104,0,0,0,0,0,0,0.334416438693572,-0.0241060230789031,-0.0160228257989444,0,0,0,0,0,0,0,0,0.540504453388578,0,0,0,0,0,0.803859954925144,0,0,0,0,0.839275387109098,0,0,0.373861910965175,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.123319086035448,0.298138516796306,0,0,0,0,0,0.521089531926469,0,0.73709709484573,0,0.521089531926469,0,0,0.537339669449712,0,0,0,0.229620053904416,0,-0.160318030086386,0.959932976453363,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.181684454572899,0.00489239793208779,0.118256113661517,-0.0171868096743848,0,0,0.183596472490449,0,0,0,0,0,0,-0.031340424028527,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.521089531926469,0,0,0,0,0,0,0.132350175541698,0,0,0,0,0,0,0,1.13851391479937,0,0,-0.0920328098005262,0,0,0,0,0,0,-0.027432074693475,-0.0226756338599131,0.231629019518721,0,0,0.90085231616775,-0.054385572482455,0.334416438693572,0,0.143273983603019,0.334416438693572,-0.0667773874189013,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.153323010348428,0,0,0,0,0,0,0,0,0,0,0.167208219346786,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.37561097158402,0,0,0.334416438693572,0,0,0,-0.0340113632754165,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.97834414919865,0,0,0,-0.213086229657044,0,0,0,0,0,0,0,0,0.751221943168039,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.334416438693572,0,0,0,0.245795176208295,0,0,0,0,0,0,0,0,0,0,0,0,0,0.472867456687415,0,0.436712899696442,0,0,0,0,0,0,0,0,0,0,0,0.651224043158689,0,0,0,0.334416438693572,1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 |rna_box=101
 |rna_catalog_number=Cat:RtHFN: Skeletal musc
@@ Line 57: / Line 79: @@
 |rna_weight_ug=50
 |sample_age=
+|sample_category=tissues
 |sample_cell_catalog=NA
 |sample_cell_line=
@@ Line 69: / Line 92: @@
 |sample_ethnicity=A?
 |sample_experimental_condition=
+|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;6.58136204639558e-221!GO:0005737;cytoplasm;1.07276724029817e-165!GO:0043226;organelle;1.79241637945503e-145!GO:0043229;intracellular organelle;3.63789104605495e-145!GO:0043231;intracellular membrane-bound organelle;5.03554072050693e-125!GO:0043227;membrane-bound organelle;5.83229393944907e-125!GO:0044444;cytoplasmic part;1.59808464581871e-117!GO:0044422;organelle part;1.6976418456926e-100!GO:0044446;intracellular organelle part;2.80910533094962e-99!GO:0005515;protein binding;5.88898341115014e-96!GO:0032991;macromolecular complex;2.6946763054511e-90!GO:0030529;ribonucleoprotein complex;9.31841100695755e-62!GO:0044238;primary metabolic process;5.10399662092816e-59!GO:0044237;cellular metabolic process;7.7703420062941e-58!GO:0043170;macromolecule metabolic process;4.51624456063295e-57!GO:0005739;mitochondrion;1.61177435787126e-51!GO:0043234;protein complex;2.07364088686996e-51!GO:0043233;organelle lumen;1.45337401933774e-50!GO:0031974;membrane-enclosed lumen;1.45337401933774e-50!GO:0016043;cellular component organization and biogenesis;5.12915804508468e-49!GO:0003723;RNA binding;3.03339214395784e-48!GO:0005634;nucleus;2.36634861055483e-47!GO:0044428;nuclear part;3.11804765760123e-46!GO:0005840;ribosome;5.04366465044971e-44!GO:0019538;protein metabolic process;2.63425314237889e-41!GO:0003735;structural constituent of ribosome;8.45909684461819e-40!GO:0006412;translation;7.81385698839149e-38!GO:0044429;mitochondrial part;3.3564861791782e-37!GO:0043228;non-membrane-bound organelle;1.07214182709554e-36!GO:0043232;intracellular non-membrane-bound organelle;1.07214182709554e-36!GO:0044260;cellular macromolecule metabolic process;1.17522693249975e-35!GO:0033279;ribosomal subunit;2.10256550691508e-34!GO:0031967;organelle envelope;2.10256550691508e-34!GO:0031975;envelope;3.11547970326524e-34!GO:0044267;cellular protein metabolic process;4.9661766143448e-34!GO:0031090;organelle membrane;5.54792037192796e-33!GO:0005829;cytosol;1.67512657362222e-32!GO:0044249;cellular biosynthetic process;1.31248992912445e-30!GO:0009059;macromolecule biosynthetic process;2.49288930729631e-30!GO:0065003;macromolecular complex assembly;3.09884917372806e-29!GO:0022607;cellular component assembly;3.19911154211542e-29!GO:0006396;RNA processing;6.94917538341883e-29!GO:0009058;biosynthetic process;2.2651535346575e-28!GO:0010467;gene expression;8.6155794414938e-28!GO:0043283;biopolymer metabolic process;9.47349129302361e-28!GO:0006996;organelle organization and biogenesis;1.67759887947442e-26!GO:0033036;macromolecule localization;2.92824018144335e-26!GO:0031981;nuclear lumen;3.02250690643779e-26!GO:0016071;mRNA metabolic process;4.36941568520662e-26!GO:0008380;RNA splicing;4.94439256144731e-26!GO:0005830;cytosolic ribosome (sensu Eukaryota);3.00132472298637e-25!GO:0019866;organelle inner membrane;3.21347580737939e-25!GO:0046907;intracellular transport;8.94297155559535e-25!GO:0015031;protein transport;9.24608345346899e-25!GO:0005740;mitochondrial envelope;2.22593945313352e-24!GO:0008104;protein localization;2.33764238066637e-24!GO:0031966;mitochondrial membrane;7.34821391294419e-24!GO:0044445;cytosolic part;9.19946289393402e-24!GO:0045184;establishment of protein localization;3.01441421480215e-23!GO:0005743;mitochondrial inner membrane;1.41234818988587e-22!GO:0006397;mRNA processing;2.96942476321225e-22!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;2.93680663606265e-21!GO:0006119;oxidative phosphorylation;1.21397430621666e-20!GO:0008092;cytoskeletal protein binding;5.50263460885188e-20!GO:0022613;ribonucleoprotein complex biogenesis and assembly;6.45042596216133e-20!GO:0044455;mitochondrial membrane part;6.51555317198966e-20!GO:0006886;intracellular protein transport;1.30627786745597e-19!GO:0005746;mitochondrial respiratory chain;3.55979257044793e-19!GO:0015935;small ribosomal subunit;1.00947155523891e-18!GO:0005681;spliceosome;3.74901148490971e-17!GO:0015934;large ribosomal subunit;8.1748217588541e-17!GO:0015629;actin cytoskeleton;9.48857629279176e-17!GO:0031980;mitochondrial lumen;9.87453885651864e-17!GO:0005759;mitochondrial matrix;9.87453885651864e-17!GO:0005654;nucleoplasm;6.09592628941582e-16!GO:0050136;NADH dehydrogenase (quinone) activity;1.02676048335219e-15!GO:0003954;NADH dehydrogenase activity;1.02676048335219e-15!GO:0008137;NADH dehydrogenase (ubiquinone) activity;1.02676048335219e-15!GO:0000166;nucleotide binding;7.43991850973963e-15!GO:0051641;cellular localization;7.57523855282333e-15!GO:0008134;transcription factor binding;1.01929057662706e-14!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;1.58115425465431e-14!GO:0006512;ubiquitin cycle;1.60128304068499e-14!GO:0051649;establishment of cellular localization;2.5193355895113e-14!GO:0005783;endoplasmic reticulum;3.17082172262355e-14!GO:0022618;protein-RNA complex assembly;3.54411369703442e-14!GO:0048770;pigment granule;7.53747290034182e-14!GO:0042470;melanosome;7.53747290034182e-14!GO:0007517;muscle development;8.22017108010577e-14!GO:0042775;organelle ATP synthesis coupled electron transport;1.13467474982126e-13!GO:0042773;ATP synthesis coupled electron transport;1.13467474982126e-13!GO:0016874;ligase activity;1.32163896826898e-13!GO:0030964;NADH dehydrogenase complex (quinone);1.32163896826898e-13!GO:0045271;respiratory chain complex I;1.32163896826898e-13!GO:0005747;mitochondrial respiratory chain complex I;1.32163896826898e-13!GO:0044449;contractile fiber part;1.54659280837767e-13!GO:0043292;contractile fiber;2.10133156961913e-13!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);2.98379351316199e-13!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;4.2442070778379e-13!GO:0044451;nucleoplasm part;4.30433212615948e-13!GO:0008135;translation factor activity, nucleic acid binding;9.81458547607752e-13!GO:0005761;mitochondrial ribosome;1.18225102668542e-12!GO:0000313;organellar ribosome;1.18225102668542e-12!GO:0003676;nucleic acid binding;1.46981932540629e-12!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);3.23298127204801e-12!GO:0003779;actin binding;3.38670099173695e-12!GO:0051186;cofactor metabolic process;3.94520623043385e-12!GO:0006605;protein targeting;4.08293594302213e-12!GO:0016462;pyrophosphatase activity;6.04630386611041e-12!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;6.1745121747595e-12!GO:0006457;protein folding;8.22843842032809e-12!GO:0016817;hydrolase activity, acting on acid anhydrides;8.22843842032809e-12!GO:0017111;nucleoside-triphosphatase activity;8.77595881189974e-12!GO:0006259;DNA metabolic process;1.05682409348489e-11!GO:0008307;structural constituent of muscle;1.17486843226927e-11!GO:0012505;endomembrane system;1.7912805453807e-11!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;2.11892996893713e-11!GO:0043412;biopolymer modification;5.16927787795024e-11!GO:0005794;Golgi apparatus;7.01306307253636e-11!GO:0006461;protein complex assembly;7.75335797297632e-11!GO:0005635;nuclear envelope;1.0507449120057e-10!GO:0051603;proteolysis involved in cellular protein catabolic process;1.10270282521232e-10!GO:0000502;proteasome complex (sensu Eukaryota);1.10851643411649e-10!GO:0044265;cellular macromolecule catabolic process;1.48656954571041e-10!GO:0006511;ubiquitin-dependent protein catabolic process;1.50412710927226e-10!GO:0016192;vesicle-mediated transport;1.5932524030543e-10!GO:0019941;modification-dependent protein catabolic process;1.78874497800657e-10!GO:0043632;modification-dependent macromolecule catabolic process;1.78874497800657e-10!GO:0016070;RNA metabolic process;1.94074154412997e-10!GO:0006913;nucleocytoplasmic transport;1.97266817300034e-10!GO:0005730;nucleolus;2.02975878534351e-10!GO:0044257;cellular protein catabolic process;2.80297771968371e-10!GO:0032553;ribonucleotide binding;2.80297771968371e-10!GO:0032555;purine ribonucleotide binding;2.80297771968371e-10!GO:0030016;myofibril;2.96014298558609e-10!GO:0006464;protein modification process;3.08277636148131e-10!GO:0048523;negative regulation of cellular process;3.28549061648527e-10!GO:0031965;nuclear membrane;4.5915189294163e-10!GO:0048193;Golgi vesicle transport;5.68819819764963e-10!GO:0000398;nuclear mRNA splicing, via spliceosome;6.73296469783366e-10!GO:0000375;RNA splicing, via transesterification reactions;6.73296469783366e-10!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;6.73296469783366e-10!GO:0051169;nuclear transport;7.03730415715428e-10!GO:0050789;regulation of biological process;8.18430108764055e-10!GO:0008565;protein transporter activity;9.75512503057484e-10!GO:0043687;post-translational protein modification;1.3743322740144e-09!GO:0030029;actin filament-based process;1.62460172473417e-09!GO:0051082;unfolded protein binding;2.05690572845179e-09!GO:0017076;purine nucleotide binding;2.15467642576915e-09!GO:0030036;actin cytoskeleton organization and biogenesis;2.2709553931324e-09!GO:0006446;regulation of translational initiation;2.72307916040457e-09!GO:0017038;protein import;2.84525000661593e-09!GO:0006413;translational initiation;3.18378350295037e-09!GO:0044432;endoplasmic reticulum part;3.97828816653534e-09!GO:0003743;translation initiation factor activity;4.38461202381323e-09!GO:0006325;establishment and/or maintenance of chromatin architecture;6.20764501800633e-09!GO:0050794;regulation of cellular process;7.70519468306462e-09!GO:0003712;transcription cofactor activity;7.85196437878549e-09!GO:0030017;sarcomere;9.12506921593036e-09!GO:0006732;coenzyme metabolic process;1.07355233815187e-08!GO:0030163;protein catabolic process;1.49673635745378e-08!GO:0043285;biopolymer catabolic process;1.74905446904792e-08!GO:0048519;negative regulation of biological process;1.90763839175777e-08!GO:0045333;cellular respiration;2.21427137489009e-08!GO:0009057;macromolecule catabolic process;2.61765333604446e-08!GO:0006323;DNA packaging;2.81477518175662e-08!GO:0044248;cellular catabolic process;3.6691736006098e-08!GO:0007010;cytoskeleton organization and biogenesis;5.24871566349679e-08!GO:0009060;aerobic respiration;5.24878496187004e-08!GO:0005793;ER-Golgi intermediate compartment;5.96598299701338e-08!GO:0015078;hydrogen ion transmembrane transporter activity;6.73231497376065e-08!GO:0031252;leading edge;6.81369084016791e-08!GO:0006366;transcription from RNA polymerase II promoter;7.18250367898108e-08!GO:0008639;small protein conjugating enzyme activity;7.24795290853129e-08!GO:0007049;cell cycle;7.40418754956545e-08!GO:0019829;cation-transporting ATPase activity;9.49844266793409e-08!GO:0004842;ubiquitin-protein ligase activity;1.09595062818532e-07!GO:0005524;ATP binding;1.13231131706709e-07!GO:0006163;purine nucleotide metabolic process;1.13233171121624e-07!GO:0009055;electron carrier activity;1.28917963455336e-07!GO:0032559;adenyl ribonucleotide binding;1.45482370278976e-07!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;1.53840545462868e-07!GO:0044453;nuclear membrane part;1.61731362894297e-07!GO:0015980;energy derivation by oxidation of organic compounds;1.70884016473859e-07!GO:0005788;endoplasmic reticulum lumen;2.39872368889684e-07!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;2.65443314717451e-07!GO:0009150;purine ribonucleotide metabolic process;2.65443314717451e-07!GO:0051276;chromosome organization and biogenesis;3.46337714536187e-07!GO:0019787;small conjugating protein ligase activity;5.82709885929708e-07!GO:0009259;ribonucleotide metabolic process;5.85367396865362e-07!GO:0006606;protein import into nucleus;7.76931639908968e-07!GO:0003012;muscle system process;7.82069689648062e-07!GO:0006936;muscle contraction;7.82069689648062e-07!GO:0030554;adenyl nucleotide binding;1.14452125424656e-06!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;1.21777910399759e-06!GO:0051170;nuclear import;1.26998560089466e-06!GO:0016887;ATPase activity;1.33136534103756e-06!GO:0030120;vesicle coat;1.48427559356458e-06!GO:0030662;coated vesicle membrane;1.48427559356458e-06!GO:0042254;ribosome biogenesis and assembly;1.57053051859882e-06!GO:0051427;hormone receptor binding;1.89624069316379e-06!GO:0065007;biological regulation;1.94269181051515e-06!GO:0016604;nuclear body;2.05989827287243e-06!GO:0015986;ATP synthesis coupled proton transport;2.05989827287243e-06!GO:0015985;energy coupled proton transport, down electrochemical gradient;2.05989827287243e-06!GO:0005856;cytoskeleton;2.17639238732977e-06!GO:0006099;tricarboxylic acid cycle;2.40177447994899e-06!GO:0046356;acetyl-CoA catabolic process;2.40177447994899e-06!GO:0009141;nucleoside triphosphate metabolic process;2.40196837215483e-06!GO:0042623;ATPase activity, coupled;2.40196837215483e-06!GO:0009199;ribonucleoside triphosphate metabolic process;2.40196837215483e-06!GO:0046034;ATP metabolic process;2.40196837215483e-06!GO:0006793;phosphorus metabolic process;2.63801397585718e-06!GO:0006796;phosphate metabolic process;2.63801397585718e-06!GO:0009205;purine ribonucleoside triphosphate metabolic process;2.7482924530727e-06!GO:0009144;purine nucleoside triphosphate metabolic process;2.7482924530727e-06!GO:0006164;purine nucleotide biosynthetic process;2.7737815799227e-06!GO:0005583;fibrillar collagen;2.98870045477727e-06!GO:0014706;striated muscle development;3.14844005288992e-06!GO:0016879;ligase activity, forming carbon-nitrogen bonds;3.23124782075731e-06!GO:0035257;nuclear hormone receptor binding;3.77767730840395e-06!GO:0030532;small nuclear ribonucleoprotein complex;3.77767730840395e-06!GO:0015077;monovalent inorganic cation transmembrane transporter activity;3.89972523275498e-06!GO:0051188;cofactor biosynthetic process;4.23844601845415e-06!GO:0006357;regulation of transcription from RNA polymerase II promoter;4.96096148030963e-06!GO:0012501;programmed cell death;4.96425219745822e-06!GO:0065004;protein-DNA complex assembly;5.42634717163029e-06!GO:0048475;coated membrane;5.58881909705249e-06!GO:0030117;membrane coat;5.58881909705249e-06!GO:0006084;acetyl-CoA metabolic process;5.75022711118944e-06!GO:0007519;skeletal muscle development;5.99345060880735e-06!GO:0045259;proton-transporting ATP synthase complex;6.10938498378706e-06!GO:0009152;purine ribonucleotide biosynthetic process;6.60023093969087e-06!GO:0051246;regulation of protein metabolic process;6.89274995667706e-06!GO:0006333;chromatin assembly or disassembly;7.38784426263016e-06!GO:0005798;Golgi-associated vesicle;7.38784426263016e-06!GO:0006915;apoptosis;7.5384220300258e-06!GO:0044420;extracellular matrix part;8.73272992857036e-06!GO:0000785;chromatin;8.91128208937459e-06!GO:0016044;membrane organization and biogenesis;9.60431483270015e-06!GO:0009117;nucleotide metabolic process;9.76511929502397e-06!GO:0016310;phosphorylation;1.03261958121273e-05!GO:0009109;coenzyme catabolic process;1.11455877818716e-05!GO:0016469;proton-transporting two-sector ATPase complex;1.13824569119983e-05!GO:0000151;ubiquitin ligase complex;1.22828679147699e-05!GO:0016607;nuclear speck;1.24181004431007e-05!GO:0006916;anti-apoptosis;1.37154411171153e-05!GO:0065002;intracellular protein transport across a membrane;1.38949264425506e-05!GO:0009260;ribonucleotide biosynthetic process;1.46510021615691e-05!GO:0005643;nuclear pore;1.48942095631633e-05!GO:0051187;cofactor catabolic process;1.49686416547838e-05!GO:0016881;acid-amino acid ligase activity;1.49960436033696e-05!GO:0006888;ER to Golgi vesicle-mediated transport;1.66638093526938e-05!GO:0006334;nucleosome assembly;1.77160948618739e-05!GO:0005581;collagen;1.97860020938639e-05!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;2.0287074758575e-05!GO:0004812;aminoacyl-tRNA ligase activity;2.0287074758575e-05!GO:0016875;ligase activity, forming carbon-oxygen bonds;2.0287074758575e-05!GO:0005523;tropomyosin binding;2.12955472425909e-05!GO:0006941;striated muscle contraction;2.32139601226529e-05!GO:0022402;cell cycle process;2.3620789679352e-05!GO:0045786;negative regulation of progression through cell cycle;2.38228955480571e-05!GO:0016049;cell growth;2.98432437112569e-05!GO:0031988;membrane-bound vesicle;2.9980272600788e-05!GO:0042175;nuclear envelope-endoplasmic reticulum network;3.02251941706511e-05!GO:0051128;regulation of cellular component organization and biogenesis;3.05210214632407e-05!GO:0005865;striated muscle thin filament;3.25958661054011e-05!GO:0008219;cell death;3.45564334377988e-05!GO:0016265;death;3.45564334377988e-05!GO:0008361;regulation of cell size;3.4713136914879e-05!GO:0003924;GTPase activity;3.4757124492889e-05!GO:0016564;transcription repressor activity;3.56810916024573e-05!GO:0000245;spliceosome assembly;3.6313841808729e-05!GO:0016023;cytoplasmic membrane-bound vesicle;3.73462886985814e-05!GO:0009142;nucleoside triphosphate biosynthetic process;3.82728175199647e-05!GO:0009201;ribonucleoside triphosphate biosynthetic process;3.82728175199647e-05!GO:0006754;ATP biosynthetic process;3.96513347790437e-05!GO:0006753;nucleoside phosphate metabolic process;3.96513347790437e-05!GO:0032446;protein modification by small protein conjugation;4.03300142165929e-05!GO:0043069;negative regulation of programmed cell death;4.11817734177264e-05!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;4.38743347146715e-05!GO:0009145;purine nucleoside triphosphate biosynthetic process;4.38743347146715e-05!GO:0003713;transcription coactivator activity;4.6371530409363e-05!GO:0043066;negative regulation of apoptosis;4.80415633364595e-05!GO:0005789;endoplasmic reticulum membrane;4.80415633364595e-05!GO:0003697;single-stranded DNA binding;5.28847647742396e-05!GO:0043038;amino acid activation;5.79166803463083e-05!GO:0006418;tRNA aminoacylation for protein translation;5.79166803463083e-05!GO:0043039;tRNA aminoacylation;5.79166803463083e-05!GO:0031497;chromatin assembly;5.79166803463083e-05!GO:0051726;regulation of cell cycle;6.34409285870528e-05!GO:0000074;regulation of progression through cell cycle;6.56278323484636e-05!GO:0016567;protein ubiquitination;6.90141559444385e-05!GO:0043566;structure-specific DNA binding;7.69192110876957e-05!GO:0030027;lamellipodium;7.74989278884944e-05!GO:0006091;generation of precursor metabolites and energy;7.77303606066384e-05!GO:0005525;GTP binding;8.29226876742011e-05!GO:0005694;chromosome;8.34439777160241e-05!GO:0005762;mitochondrial large ribosomal subunit;8.63340504015899e-05!GO:0000315;organellar large ribosomal subunit;8.63340504015899e-05!GO:0031982;vesicle;9.18505442939661e-05!GO:0016563;transcription activator activity;9.48372103348813e-05!GO:0019899;enzyme binding;0.000108217667459909!GO:0016568;chromatin modification;0.000108536319743167!GO:0001558;regulation of cell growth;0.000137430961416309!GO:0000314;organellar small ribosomal subunit;0.000139209915230467!GO:0005763;mitochondrial small ribosomal subunit;0.000139209915230467!GO:0031410;cytoplasmic vesicle;0.000147395173636323!GO:0035258;steroid hormone receptor binding;0.000150093257179746!GO:0016529;sarcoplasmic reticulum;0.000153465619542944!GO:0016528;sarcoplasm;0.000153465619542944!GO:0046930;pore complex;0.000158127586999029!GO:0007264;small GTPase mediated signal transduction;0.000165000149530431!GO:0009056;catabolic process;0.000185341749428293!GO:0019843;rRNA binding;0.000206259764775806!GO:0050657;nucleic acid transport;0.000208883780300154!GO:0051236;establishment of RNA localization;0.000208883780300154!GO:0050658;RNA transport;0.000208883780300154!GO:0051789;response to protein stimulus;0.000208883780300154!GO:0006986;response to unfolded protein;0.000208883780300154!GO:0005839;proteasome core complex (sensu Eukaryota);0.000215926834017005!GO:0016481;negative regulation of transcription;0.000223697198479805!GO:0007005;mitochondrion organization and biogenesis;0.000231259288670718!GO:0009108;coenzyme biosynthetic process;0.000241574854072712!GO:0042802;identical protein binding;0.000247998772884192!GO:0005667;transcription factor complex;0.000249824638870092!GO:0006403;RNA localization;0.000262595039022875!GO:0009892;negative regulation of metabolic process;0.000281639622354239!GO:0001726;ruffle;0.000305498802493022!GO:0031324;negative regulation of cellular metabolic process;0.000317184185269845!GO:0003714;transcription corepressor activity;0.000346907705186997!GO:0006399;tRNA metabolic process;0.000346907705186997!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;0.00038117525765081!GO:0043284;biopolymer biosynthetic process;0.000381881744542514!GO:0006897;endocytosis;0.000404744871801943!GO:0010324;membrane invagination;0.000404744871801943!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.000407846962739882!GO:0015002;heme-copper terminal oxidase activity;0.000407846962739882!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.000407846962739882!GO:0004129;cytochrome-c oxidase activity;0.000407846962739882!GO:0044431;Golgi apparatus part;0.000426095254486111!GO:0043623;cellular protein complex assembly;0.000473351979180211!GO:0007265;Ras protein signal transduction;0.000504571312197261!GO:0005912;adherens junction;0.000525724237626531!GO:0032561;guanyl ribonucleotide binding;0.000567897009408353!GO:0019001;guanyl nucleotide binding;0.000567897009408353!GO:0006613;cotranslational protein targeting to membrane;0.000620190862947859!GO:0006364;rRNA processing;0.000631202010617146!GO:0016853;isomerase activity;0.000665520701273014!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.000707915607258123!GO:0005768;endosome;0.000707915607258123!GO:0048471;perinuclear region of cytoplasm;0.000753700925654268!GO:0005859;muscle myosin complex;0.000784654956563873!GO:0004386;helicase activity;0.000799619771284623!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.000804813217693235!GO:0044427;chromosomal part;0.000819951912151297!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.000822999772695198!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.000822999772695198!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.000822999772695198!GO:0042981;regulation of apoptosis;0.000846804251767257!GO:0005791;rough endoplasmic reticulum;0.000851087655552381!GO:0003746;translation elongation factor activity;0.000915210294683222!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.000919524036330233!GO:0000278;mitotic cell cycle;0.000935181974126158!GO:0004576;oligosaccharyl transferase activity;0.000936956940516119!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.000959575309554444!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;0.00101641450360307!GO:0045941;positive regulation of transcription;0.00102369835930204!GO:0015630;microtubule cytoskeleton;0.00103724291347649!GO:0006414;translational elongation;0.00106389788603978!GO:0031589;cell-substrate adhesion;0.00107374803993723!GO:0030133;transport vesicle;0.00112997486686695!GO:0008250;oligosaccharyl transferase complex;0.00114005316241855!GO:0043067;regulation of programmed cell death;0.00114534455713612!GO:0004298;threonine endopeptidase activity;0.00116983853900435!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.00118132506813631!GO:0000786;nucleosome;0.00121458378208318!GO:0045935;positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.00121627923147103!GO:0005048;signal sequence binding;0.00123961459176633!GO:0030867;rough endoplasmic reticulum membrane;0.00127530038767834!GO:0030521;androgen receptor signaling pathway;0.00128290146410558!GO:0006752;group transfer coenzyme metabolic process;0.00132891784238654!GO:0016072;rRNA metabolic process;0.00150402597798512!GO:0006260;DNA replication;0.00166489287464029!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.00177627041790756!GO:0048522;positive regulation of cellular process;0.00181225434039977!GO:0044262;cellular carbohydrate metabolic process;0.00187006156740948!GO:0000902;cell morphogenesis;0.00187385821195855!GO:0032989;cellular structure morphogenesis;0.00187385821195855!GO:0005905;coated pit;0.00189924223425079!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;0.00194676186199588!GO:0006974;response to DNA damage stimulus;0.00203350271661667!GO:0005637;nuclear inner membrane;0.00206547099161372!GO:0003724;RNA helicase activity;0.00213374164148758!GO:0008026;ATP-dependent helicase activity;0.00214110206222724!GO:0031202;RNA splicing factor activity, transesterification mechanism;0.00217161717651092!GO:0005083;small GTPase regulator activity;0.00220907188205478!GO:0007160;cell-matrix adhesion;0.00222523785460837!GO:0051028;mRNA transport;0.00224516204643589!GO:0016197;endosome transport;0.00225894513306584!GO:0009165;nucleotide biosynthetic process;0.00233307236660615!GO:0008154;actin polymerization and/or depolymerization;0.00250194468292669!GO:0045892;negative regulation of transcription, DNA-dependent;0.0025588793080243!GO:0005852;eukaryotic translation initiation factor 3 complex;0.00264952399868572!GO:0022890;inorganic cation transmembrane transporter activity;0.00265075410641421!GO:0015631;tubulin binding;0.00265251128055347!GO:0030518;steroid hormone receptor signaling pathway;0.00277551118088912!GO:0019222;regulation of metabolic process;0.00286700618708582!GO:0030663;COPI coated vesicle membrane;0.00292412418518225!GO:0030126;COPI vesicle coat;0.00292412418518225!GO:0051920;peroxiredoxin activity;0.00295704928874405!GO:0005773;vacuole;0.00300769211077548!GO:0030031;cell projection biogenesis;0.00303112763313036!GO:0005813;centrosome;0.00308460486191536!GO:0030132;clathrin coat of coated pit;0.00309077321241827!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;0.00330353018135235!GO:0033116;ER-Golgi intermediate compartment membrane;0.00332248851235101!GO:0016460;myosin II complex;0.00342242849039898!GO:0016859;cis-trans isomerase activity;0.00345923146685944!GO:0007266;Rho protein signal transduction;0.00345923146685944!GO:0003899;DNA-directed RNA polymerase activity;0.00357038258159689!GO:0001725;stress fiber;0.00370290631726039!GO:0032432;actin filament bundle;0.00370290631726039!GO:0043681;protein import into mitochondrion;0.00375586686298476!GO:0030018;Z disc;0.00383220706388591!GO:0005770;late endosome;0.0039728862776881!GO:0045893;positive regulation of transcription, DNA-dependent;0.00407932159809764!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.00412164729913877!GO:0015399;primary active transmembrane transporter activity;0.00412164729913877!GO:0048741;skeletal muscle fiber development;0.00418825683914337!GO:0048747;muscle fiber development;0.00418825683914337!GO:0000323;lytic vacuole;0.00422746914210489!GO:0005764;lysosome;0.00422746914210489!GO:0006818;hydrogen transport;0.00426725781697356!GO:0015992;proton transport;0.00436292196975269!GO:0030137;COPI-coated vesicle;0.00458797150190726!GO:0051087;chaperone binding;0.00462201762142723!GO:0050681;androgen receptor binding;0.0046289526067281!GO:0031674;I band;0.00463404967750513!GO:0043488;regulation of mRNA stability;0.00483210368444497!GO:0043487;regulation of RNA stability;0.00483210368444497!GO:0040008;regulation of growth;0.00488724626939456!GO:0008139;nuclear localization sequence binding;0.00499291550660083!GO:0051493;regulation of cytoskeleton organization and biogenesis;0.00502499258422741!GO:0033043;regulation of organelle organization and biogenesis;0.00502499258422741!GO:0044440;endosomal part;0.00515054376995261!GO:0010008;endosome membrane;0.00515054376995261!GO:0045445;myoblast differentiation;0.00519492148214333!GO:0048518;positive regulation of biological process;0.00554252712082547!GO:0016281;eukaryotic translation initiation factor 4F complex;0.00558157850339702!GO:0051287;NAD binding;0.00583484364731489!GO:0051252;regulation of RNA metabolic process;0.005975175807668!GO:0030134;ER to Golgi transport vesicle;0.0059858629739927!GO:0005924;cell-substrate adherens junction;0.00630257048617603!GO:0016772;transferase activity, transferring phosphorus-containing groups;0.007085876595!GO:0043021;ribonucleoprotein binding;0.00713140918029604!GO:0005815;microtubule organizing center;0.00713299376326679!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;0.00713299376326679!GO:0031032;actomyosin structure organization and biogenesis;0.00720309899221451!GO:0006942;regulation of striated muscle contraction;0.00720711270990974!GO:0016779;nucleotidyltransferase activity;0.00733735217841811!GO:0017166;vinculin binding;0.00751403605975479!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;0.00803932134045456!GO:0016491;oxidoreductase activity;0.00804402273574528!GO:0030865;cortical cytoskeleton organization and biogenesis;0.00833247492049703!GO:0051168;nuclear export;0.00844911433051205!GO:0046314;phosphocreatine biosynthetic process;0.0085658859066447!GO:0006603;phosphocreatine metabolic process;0.0085658859066447!GO:0006891;intra-Golgi vesicle-mediated transport;0.00868443755767737!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.00879224506350202!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.00879224506350202!GO:0008654;phospholipid biosynthetic process;0.00879745821118446!GO:0006509;membrane protein ectodomain proteolysis;0.00901697818038864!GO:0033619;membrane protein proteolysis;0.00901697818038864!GO:0030658;transport vesicle membrane;0.00903702826522225!GO:0030118;clathrin coat;0.00933773721271581!GO:0030055;cell-matrix junction;0.0097457464397481!GO:0005741;mitochondrial outer membrane;0.0105306955725438!GO:0031968;organelle outer membrane;0.0105371602898793!GO:0018196;peptidyl-asparagine modification;0.0105371602898793!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.0105371602898793!GO:0051329;interphase of mitotic cell cycle;0.0106778631529774!GO:0007006;mitochondrial membrane organization and biogenesis;0.0109061874902268!GO:0030127;COPII vesicle coat;0.0109615431816405!GO:0012507;ER to Golgi transport vesicle membrane;0.0109615431816405!GO:0030695;GTPase regulator activity;0.0109770203700872!GO:0000059;protein import into nucleus, docking;0.0110694446950181!GO:0009719;response to endogenous stimulus;0.011307400868059!GO:0019867;outer membrane;0.0113303435718716!GO:0000307;cyclin-dependent protein kinase holoenzyme complex;0.0114340788677403!GO:0006402;mRNA catabolic process;0.0114659691488231!GO:0030041;actin filament polymerization;0.011721492706001!GO:0000139;Golgi membrane;0.011815439187926!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.0120017125745633!GO:0006595;polyamine metabolic process;0.0121795407781394!GO:0033018;sarcoplasmic reticulum lumen;0.0122634028877089!GO:0005885;Arp2/3 protein complex;0.0124168401631186!GO:0005100;Rho GTPase activator activity;0.0124168401631186!GO:0006839;mitochondrial transport;0.0124330069280196!GO:0006281;DNA repair;0.0124500514975435!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.0129796436794971!GO:0007167;enzyme linked receptor protein signaling pathway;0.0132612413383159!GO:0048041;focal adhesion formation;0.0135909258927099!GO:0003711;transcription elongation regulator activity;0.0136491689041148!GO:0005769;early endosome;0.013690458216095!GO:0033017;sarcoplasmic reticulum membrane;0.0140764523212035!GO:0048468;cell development;0.0144598923530869!GO:0005861;troponin complex;0.0144730051677368!GO:0016363;nuclear matrix;0.0150907047091416!GO:0030522;intracellular receptor-mediated signaling pathway;0.01513426817588!GO:0005586;collagen type III;0.0155842453517836!GO:0003690;double-stranded DNA binding;0.0156957616112172!GO:0006979;response to oxidative stress;0.015843493613739!GO:0001527;microfibril;0.0159885177737588!GO:0008286;insulin receptor signaling pathway;0.0163442455395228!GO:0008186;RNA-dependent ATPase activity;0.0164879847617482!GO:0008064;regulation of actin polymerization and/or depolymerization;0.0166525261693061!GO:0005862;muscle thin filament tropomyosin;0.0167633714407356!GO:0003702;RNA polymerase II transcription factor activity;0.0167837171154378!GO:0046983;protein dimerization activity;0.0174424451588062!GO:0004177;aminopeptidase activity;0.0177065585584478!GO:0030660;Golgi-associated vesicle membrane;0.0177840839737462!GO:0000122;negative regulation of transcription from RNA polymerase II promoter;0.018019395133425!GO:0003729;mRNA binding;0.0189432933052333!GO:0030832;regulation of actin filament length;0.0190455225293896!GO:0016584;nucleosome positioning;0.0193014978422701!GO:0006937;regulation of muscle contraction;0.0193014978422701!GO:0016740;transferase activity;0.0195128496854216!GO:0045098;type III intermediate filament;0.0195386280987147!GO:0042692;muscle cell differentiation;0.0198243977480473!GO:0043492;ATPase activity, coupled to movement of substances;0.0198243977480473!GO:0051539;4 iron, 4 sulfur cluster binding;0.0198243977480473!GO:0051098;regulation of binding;0.0200515390832067!GO:0006778;porphyrin metabolic process;0.0200515390832067!GO:0033013;tetrapyrrole metabolic process;0.0200515390832067!GO:0022603;regulation of anatomical structure morphogenesis;0.0208923897024212!GO:0008360;regulation of cell shape;0.0208923897024212!GO:0022604;regulation of cell morphogenesis;0.0208923897024212!GO:0005853;eukaryotic translation elongation factor 1 complex;0.0215760236697107!GO:0048487;beta-tubulin binding;0.0217173109418132!GO:0008180;signalosome;0.0217173109418132!GO:0032956;regulation of actin cytoskeleton organization and biogenesis;0.0220509254940773!GO:0006779;porphyrin biosynthetic process;0.0220509254940773!GO:0033014;tetrapyrrole biosynthetic process;0.0220509254940773!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.0221974624427602!GO:0005869;dynactin complex;0.0222615726988512!GO:0007050;cell cycle arrest;0.0222615726988512!GO:0051129;negative regulation of cellular component organization and biogenesis;0.022563639142495!GO:0032535;regulation of cellular component size;0.022563639142495!GO:0005977;glycogen metabolic process;0.0238086695313314!GO:0017022;myosin binding;0.0241162646792758!GO:0030866;cortical actin cytoskeleton organization and biogenesis;0.0249643857020008!GO:0007179;transforming growth factor beta receptor signaling pathway;0.0254494136471286!GO:0009893;positive regulation of metabolic process;0.0259383728147807!GO:0031072;heat shock protein binding;0.0260318436748711!GO:0009966;regulation of signal transduction;0.0267005958168572!GO:0051325;interphase;0.026815114883375!GO:0022415;viral reproductive process;0.0274236888968615!GO:0005925;focal adhesion;0.0276987844826818!GO:0005684;U2-dependent spliceosome;0.0278897972375841!GO:0019904;protein domain specific binding;0.0281642339739918!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.0284508688388815!GO:0033673;negative regulation of kinase activity;0.0287010007479503!GO:0006469;negative regulation of protein kinase activity;0.0287010007479503!GO:0008017;microtubule binding;0.0287730402438448!GO:0051540;metal cluster binding;0.0287730402438448!GO:0051536;iron-sulfur cluster binding;0.0287730402438448!GO:0006733;oxidoreduction coenzyme metabolic process;0.028812559105214!GO:0008047;enzyme activator activity;0.0288592410647097!GO:0007169;transmembrane receptor protein tyrosine kinase signaling pathway;0.0291492326290907!GO:0031272;regulation of pseudopodium formation;0.0300260922718613!GO:0031269;pseudopodium formation;0.0300260922718613!GO:0031344;regulation of cell projection organization and biogenesis;0.0300260922718613!GO:0031268;pseudopodium organization and biogenesis;0.0300260922718613!GO:0031346;positive regulation of cell projection organization and biogenesis;0.0300260922718613!GO:0031274;positive regulation of pseudopodium formation;0.0300260922718613!GO:0008147;structural constituent of bone;0.03010809435651!GO:0005518;collagen binding;0.0312605582214852!GO:0006607;NLS-bearing substrate import into nucleus;0.032677664106593!GO:0048500;signal recognition particle;0.0328765111038301!GO:0006950;response to stress;0.0337506225680999!GO:0005832;chaperonin-containing T-complex;0.0355997089218826!GO:0045947;negative regulation of translational initiation;0.0356813770467577!GO:0005605;basal lamina;0.0357550544534014!GO:0042396;phosphagen biosynthetic process;0.0368951887420292!GO:0006599;phosphagen metabolic process;0.0368951887420292!GO:0006650;glycerophospholipid metabolic process;0.037022229476301!GO:0004004;ATP-dependent RNA helicase activity;0.0375366621240488!GO:0030199;collagen fibril organization;0.0375709721992349!GO:0042168;heme metabolic process;0.0377774176232947!GO:0006626;protein targeting to mitochondrion;0.0382689806635078!GO:0005584;collagen type I;0.0385088322148671!GO:0031143;pseudopodium;0.0385088322148671!GO:0051101;regulation of DNA binding;0.0392307415930412!GO:0006740;NADPH regeneration;0.0399732284233015!GO:0006098;pentose-phosphate shunt;0.0399732284233015!GO:0007249;I-kappaB kinase/NF-kappaB cascade;0.0401570692080064!GO:0008287;protein serine/threonine phosphatase complex;0.0404980286359462!GO:0042805;actinin binding;0.0405112575912867!GO:0006783;heme biosynthetic process;0.0405557970807552!GO:0008320;protein transmembrane transporter activity;0.0414156059101824!GO:0005874;microtubule;0.0432130764050189!GO:0030880;RNA polymerase complex;0.0441315798087056!GO:0006611;protein export from nucleus;0.0445139436087422!GO:0030911;TPR domain binding;0.0445463325311682!GO:0012506;vesicle membrane;0.0459845846326643!GO:0030218;erythrocyte differentiation;0.0468089256624128!GO:0051270;regulation of cell motility;0.047113943442678!GO:0030176;integral to endoplasmic reticulum membrane;0.047202049154211!GO:0022403;cell cycle phase;0.0472362769846421!GO:0045792;negative regulation of cell size;0.047271237883246!GO:0031628;opioid receptor binding;0.047993767285297!GO:0031852;mu-type opioid receptor binding;0.047993767285297!GO:0006635;fatty acid beta-oxidation;0.047993767285297!GO:0015036;disulfide oxidoreductase activity;0.0485675555865771!GO:0006073;glucan metabolic process;0.0489375217558421!GO:0031901;early endosome membrane;0.0493118655922938!GO:0032981;mitochondrial respiratory chain complex I assembly;0.0493118655922938!GO:0010257;NADH dehydrogenase complex assembly;0.0493118655922938!GO:0033108;mitochondrial respiratory chain complex assembly;0.0493118655922938!GO:0000792;heterochromatin;0.0495866103614798!GO:0051348;negative regulation of transferase activity;0.049656675011754!GO:0030659;cytoplasmic vesicle membrane;0.049814981888607!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.0499310964350204
 |sample_id=10066
 |sample_note=
@@ Line 76: / Line 100: @@
 |sample_tissue=skeletal muscle
 |top_motifs=MEF2{A,B,C,D}:5.31938076627;NR5A1,2:4.02092255441;TAL1_TCF{3,4,12}:3.95243441826;SPZ1:3.52453105331;NR6A1:3.38879902437;GLI1..3:3.29189226393;ESR1:3.11798671485;NR1H4:3.11727426544;GCM1,2:2.69136655759;SRF:2.60738184913;TFAP4:2.48619882124;NHLH1,2:2.4359030741;IKZF2:2.37240049663;NANOG{mouse}:2.34999070815;SOX5:2.29875083303;TOPORS:2.27781991346;HOX{A4,D4}:2.27769478223;KLF4:2.21461329182;TBP:2.20080245294;MYBL2:2.17540875864;ZIC1..3:2.16692402212;SMAD1..7,9:2.06842014619;POU3F1..4:2.03947069085;FOXL1:1.95616717403;LHX3,4:1.85442970941;ZNF384:1.84028835932;TGIF1:1.81063479524;LMO2:1.7657816441;TLX2:1.64201888381;MYOD1:1.64136453613;GTF2A1,2:1.6284038638;HIC1:1.60758001326;PATZ1:1.52679825661;STAT5{A,B}:1.44560932157;MED-1{core}:1.43914297675;RXRA_VDR{dimer}:1.43432036249;TFAP2{A,C}:1.41309015246;GFI1B:1.39966424195;IKZF1:1.39420706568;MZF1:1.39042805924;YY1:1.36702727671;MAZ:1.33734755968;POU1F1:1.32419359051;MAFB:1.32312788859;UFEwm:1.23808375897;PRDM1:1.23501794642;CUX2:1.16127130984;ZNF423:1.15671947096;TLX1..3_NFIC{dimer}:1.14680867497;NFATC1..3:1.10319688357;TFAP2B:1.07066412711;ZNF238:1.06618183429;FOXP3:1.06436312169;EGR1..3:1.06365822474;HOX{A5,B5}:1.06016788024;ALX1:1.03712377726;TEAD1:1.02453647829;BPTF:1.00294897528;NFE2L1:0.994877985214;EVI1:0.968874242559;NKX3-1:0.966016546682;RXR{A,B,G}:0.965143544278;PAX5:0.964603037439;MYFfamily:0.951157664693;GATA4:0.919592707054;RREB1:0.919178764962;MTF1:0.91665196584;GFI1:0.91169814477;SOX17:0.888281922475;PAX6:0.880369867591;GTF2I:0.879994636559;POU6F1:0.86024636047;XBP1:0.850600268629;REST:0.817636760751;NKX2-3_NKX2-5:0.813908550268;POU5F1:0.772961982316;HES1:0.722763607062;ATF2:0.708756930522;PBX1:0.671838038755;SOX{8,9,10}:0.601102226016;TFCP2:0.585894865427;HAND1,2:0.553041887285;ESRRA:0.520264596618;PAX3,7:0.495690528195;TBX4,5:0.464790455145;HMX1:0.440939703994;SP1:0.425128877705;NKX6-1,2:0.398390205961;NFIX:0.385164419633;MTE{core}:0.379599963778;AR:0.379224652221;RFX2..5_RFXANK_RFXAP:0.360120616441;ZNF148:0.348992761941;ALX4:0.344698585455;RORA:0.310738427398;RBPJ:0.282164361015;LEF1_TCF7_TCF7L1,2:0.280727794999;HOX{A6,A7,B6,B7}:0.256039036175;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.221448133636;HOXA9_MEIS1:0.191352632776;FOXP1:0.187763730914;NKX2-1,4:0.174682656028;SNAI1..3:0.172758480172;BREu{core}:0.1668989287;GATA6:0.120033247164;ZFP161:0.10272322036;ARID5B:0.057266360771;STAT2,4,6:0.0129386503241;EP300:0.0106046534334;FOXO1,3,4:-0.0187993064682;SOX2:-0.0627091626157;ZNF143:-0.0631483170548;IRF7:-0.0741405882519;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.075186667638;PAX2:-0.0903038272677;TEF:-0.123886645525;EN1,2:-0.126985680287;CDX1,2,4:-0.151411562945;HNF4A_NR2F1,2:-0.157909451336;NANOG:-0.168009403846;HMGA1,2:-0.180318941473;NR3C1:-0.189031060002;AIRE:-0.199892971072;SPIB:-0.258041601594;E2F1..5:-0.26196526837;XCPE1{core}:-0.266721354638;PITX1..3:-0.284454703695;ZBTB6:-0.287683066406;SPI1:-0.338556961555;HNF1A:-0.398668820543;FOXQ1:-0.405178777736;FOXA2:-0.417962287328;FOXM1:-0.422181950342;EBF1:-0.425162244267;PDX1:-0.438591390864;ETS1,2:-0.480285775016;JUN:-0.513736497602;TP53:-0.531699941699;NFKB1_REL_RELA:-0.547187723226;NKX2-2,8:-0.560251522071;PAX1,9:-0.566434073362;CRX:-0.576150383745;HSF1,2:-0.585628527854;ATF6:-0.587927504276;OCT4_SOX2{dimer}:-0.588256130734;NFIL3:-0.596425977687;SREBF1,2:-0.597335937755;AHR_ARNT_ARNT2:-0.627908440224;FOX{F1,F2,J1}:-0.628945962425;ATF4:-0.64752168744;PAX8:-0.672572390598;GZF1:-0.67417018711;HLF:-0.679115459064;ONECUT1,2:-0.691079297649;DMAP1_NCOR{1,2}_SMARC:-0.693327452635;ZBTB16:-0.695207417327;ZEB1:-0.700780826896;NFY{A,B,C}:-0.738519225252;RFX1:-0.749322844053;FOSL2:-0.750165130923;VSX1,2:-0.756859671225;FOXD3:-0.769698416828;RUNX1..3:-0.78601889381;TFDP1:-0.805421632448;IRF1,2:-0.83606966053;FOX{D1,D2}:-0.870561181259;NKX3-2:-0.87489455495;PPARG:-0.876815253934;NRF1:-0.905187496696;FOS_FOS{B,L1}_JUN{B,D}:-0.933127915369;NFE2L2:-0.936696544006;POU2F1..3:-0.974529706166;ELF1,2,4:-0.981505598033;PAX4:-0.984944216812;BACH2:-0.995994472426;DBP:-1.03880559826;STAT1,3:-1.04786296583;HBP1_HMGB_SSRP1_UBTF:-1.07992401039;NFE2:-1.14714774342;HIF1A:-1.23289287884;ATF5_CREB3:-1.24989263898;CREB1:-1.25191417831;bHLH_family:-1.26153618038;FOX{I1,J2}:-1.26501385789;CEBPA,B_DDIT3:-1.28691184265;FOXN1:-1.29006572795;CDC5L:-1.33238180374;MYB:-1.40505182967;T:-1.40598628193;PRRX1,2:-1.53953258831;ELK1,4_GABP{A,B1}:-1.56917564086;ADNP_IRX_SIX_ZHX:-1.94872909244
+|xref=
+|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10066-101I3;search_select_hide=table117:FF:10066-101I3
 }}

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FF:10066-101I3: Difference between revisions

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Latest revision as of 12:19, 3 June 2020

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	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0