FF:10790-110H7: Difference between revisions

Latest revision as of 15:04, 3 June 2020

Name:	teratocarcinoma cell line:NCC-IT-A3
Species:	Human (Homo sapiens)
Library ID:	CNhs11878
Sample type:	cell lines
Genomic View:	UCSC
RefEX:	Specific genes
CAGEd-oPOSSUM:	link
ZENBU report :	link

Additional information

Sample information

strain	NA
tissue	mediastinum
dev stage	NA
sex	male
age	24
cell type	germ cell
cell line	NCC-IT-A3
company	JAPAN HEALTH SCIENCES FOUNDATION - Health Science Research Resources Bank
collaboration	FANTOM5 OSC CORE (contact: Al Forrest)
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	NA
catalog number	NA
sample type	total RNA
extraction protocol (Details)	OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers

Method		Sample accession id
CAGE		SAMD00005042

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs11878		CAGE		DRX008019		DRR008891

Accession ID Hg19

Library id		BAM		CTSS
CNhs11878		DRZ000316		DRZ001701

Accession ID Hg38

Library id		BAM		CTSS
CNhs11878		DRZ011666		DRZ013051

Download raw sequence, BAM & CTSS

Hg19

Fasta	BAM	CTSS
download	download	donwload

Hg38

BAM	CTSS
download	donwload

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

Coexpression cluster	score
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral	0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate	0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural	0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial	0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel	0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS	0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils	0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural	0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis	0.325
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy	0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood	0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate	0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma	0.603
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial	0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic	0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat	0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal	0
C113-thyroid-throat-lung-lymph-small-colon-trachea	0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma	0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus	0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea	0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal	0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula	0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD19	0
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils	0
C120-immature-salivary-tongue-skin-cervical-CD14-CD34	0
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B	0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal	0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils	0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte	0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus	0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain	0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil	0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP	0.0858
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small	0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD4	0
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar	0.0858
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin	0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived	0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma	0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis	0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum	0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal	0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic	0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal	0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal	0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen	0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen	0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B	0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair	0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast	0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis	0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal	0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell	0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral	0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal	0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum	0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue	0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small	0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast	0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung	0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular	0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate	0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid	0
C156-plasma-splenic-hereditary-B-large-xeroderma-b	0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea	0.0225
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen	0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal	0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain	0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral	0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta	0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon	0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal	0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma	0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial	0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung	0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD4	0
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral	0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma	0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage	0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet	0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye	0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes	0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose	0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils	0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural	0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19	-0.0658
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous	0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus	0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil	0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood	0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle	0.213
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar	0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute	0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt	0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid	0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis	0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid	0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage	0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat	0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen	0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma	0
C190-colon-small-rectum-duodenum-appendix-temporal-oral	0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic	0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD4	0
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD14	0
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar	0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal	0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial	0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival	0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes	0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma	0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast	0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat	0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed	-0.0655
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall	0
C202-salivary-skin-penis-tongue-uterus-cervical-immature	0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic	0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD34	0
C205-mycosis-cord-hairy-xeroderma-CD4-B-b	0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary	0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte	0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous	0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen	0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic	0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil	0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney	0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD34	0
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral	0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain	0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature	0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD34	0
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital	0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary	0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum	0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD19	0
C220-Adipocyte-mature-left-breast-skin-liver-adipose	0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular	0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte	-0.0342
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte	0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal	0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal	0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal	0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue	0.045
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult	0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart	0.045
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD14	0
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung	0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis	0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum	0.788
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF7	0
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma	0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas	0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma	0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial	0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell	0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy	0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral	0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal	0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus	0.216
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach	0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing	0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage	0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic	0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory	-0.0303
C247-pons-locus-medulla-spinal-paracentral-medial-occipital	0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast	0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial	0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall	0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD4	0
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue	0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma	0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum	0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris	0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast	0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla	0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral	0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric	0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing	0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole	0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood	0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal	0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms	0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil	0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute	0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8	0
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast	0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear	0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate	0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD4	0
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung	0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth	0
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum	0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil	0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast	0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte	0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal	0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal	0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma	0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory	0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial	0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic	0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD4	0
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small	0.522
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat	0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular	0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus	0.166
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic	0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial	0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal	0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal	0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left	0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart	0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature	0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea	0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal	0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD34	0
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral	0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte	0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed	0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral	0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital	0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood	0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala	0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal	0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils	0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic	0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid	0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole	0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus	0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea	0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory	0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen	0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile	0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula	0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt	0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea	0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms	0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD133	0
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus	0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small	0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal	0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon	0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder	0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature	0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS	0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel	0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix	0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus	0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma	0.321
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas	0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma	0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas	0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma	0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary	0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature	0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma	0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue	0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural	0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H9	0
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic	0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature	0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical	0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b	0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph	0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute	0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic	0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils	0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus	0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung	0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma	0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK	0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast	0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue	0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate	0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left	0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal	0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy	0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral	0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell	0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD8	0
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea	0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal	0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD34	0
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast	0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid	0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD34	0
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic	0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon	0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma	0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma	0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic	0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived	0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic	0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left	0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen	0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair	0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole	0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular	0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma	0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid	0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix	0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain	0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole	0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs11878

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	3.09182e-4
MA0003.1	MA0003.1	0.0849
MA0004.1	MA0004.1	0.967
MA0006.1	MA0006.1	0.884
MA0007.1	MA0007.1	0.977
MA0009.1	MA0009.1	0.615
MA0014.1	MA0014.1	0.787
MA0017.1	MA0017.1	0.16
MA0018.2	MA0018.2	0.883
MA0019.1	MA0019.1	0.435
MA0024.1	MA0024.1	2.57259e-6
MA0025.1	MA0025.1	0.26
MA0027.1	MA0027.1	0.735
MA0028.1	MA0028.1	4.21713e-5
MA0029.1	MA0029.1	0.661
MA0030.1	MA0030.1	0.145
MA0031.1	MA0031.1	0.163
MA0035.2	MA0035.2	0.861
MA0038.1	MA0038.1	1.95481e-4
MA0039.2	MA0039.2	0.0294
MA0040.1	MA0040.1	0.208
MA0041.1	MA0041.1	0.149
MA0042.1	MA0042.1	0.424
MA0043.1	MA0043.1	0.767
MA0046.1	MA0046.1	0.191
MA0047.2	MA0047.2	0.00813
MA0048.1	MA0048.1	0.222
MA0050.1	MA0050.1	3.13132e-8
MA0051.1	MA0051.1	3.99188e-7
MA0052.1	MA0052.1	0.00117
MA0055.1	MA0055.1	0.0805
MA0057.1	MA0057.1	0.441
MA0058.1	MA0058.1	0.807
MA0059.1	MA0059.1	0.997
MA0060.1	MA0060.1	2.15902e-15
MA0061.1	MA0061.1	0.00667
MA0062.2	MA0062.2	8.07042e-4
MA0065.2	MA0065.2	0.924
MA0066.1	MA0066.1	0.493
MA0067.1	MA0067.1	0.341
MA0068.1	MA0068.1	0.00634
MA0069.1	MA0069.1	0.44
MA0070.1	MA0070.1	0.568
MA0071.1	MA0071.1	0.692
MA0072.1	MA0072.1	0.598
MA0073.1	MA0073.1	0.536
MA0074.1	MA0074.1	0.167
MA0076.1	MA0076.1	2.31886e-5
MA0077.1	MA0077.1	0.117
MA0078.1	MA0078.1	0.75
MA0079.2	MA0079.2	0.532
MA0080.2	MA0080.2	4.96116e-11
MA0081.1	MA0081.1	0.085
MA0083.1	MA0083.1	3.01388e-4
MA0084.1	MA0084.1	0.0955
MA0087.1	MA0087.1	0.697
MA0088.1	MA0088.1	0.215
MA0090.1	MA0090.1	0.114
MA0091.1	MA0091.1	0.0918
MA0092.1	MA0092.1	0.12
MA0093.1	MA0093.1	0.958
MA0099.2	MA0099.2	1.97587e-16
MA0100.1	MA0100.1	0.347
MA0101.1	MA0101.1	0.0751
MA0102.2	MA0102.2	0.00105
MA0103.1	MA0103.1	0.715
MA0104.2	MA0104.2	0.471
MA0105.1	MA0105.1	0.0188
MA0106.1	MA0106.1	0.142
MA0107.1	MA0107.1	0.00706
MA0108.2	MA0108.2	0.608
MA0111.1	MA0111.1	0.731
MA0112.2	MA0112.2	2.79118e-4
MA0113.1	MA0113.1	0.0808
MA0114.1	MA0114.1	0.78
MA0115.1	MA0115.1	0.0923
MA0116.1	MA0116.1	0.173
MA0117.1	MA0117.1	0.915
MA0119.1	MA0119.1	0.0415
MA0122.1	MA0122.1	0.973
MA0124.1	MA0124.1	0.417
MA0125.1	MA0125.1	0.396
MA0131.1	MA0131.1	0.166
MA0135.1	MA0135.1	0.0531
MA0136.1	MA0136.1	2.7811e-7
MA0137.2	MA0137.2	0.266
MA0138.2	MA0138.2	0.0624
MA0139.1	MA0139.1	0.628
MA0140.1	MA0140.1	0.789
MA0141.1	MA0141.1	0.756
MA0142.1	MA0142.1	5.2373e-18
MA0143.1	MA0143.1	8.14698e-6
MA0144.1	MA0144.1	0.0395
MA0145.1	MA0145.1	0.295
MA0146.1	MA0146.1	0.494
MA0147.1	MA0147.1	0.344
MA0148.1	MA0148.1	0.0525
MA0149.1	MA0149.1	0.981
MA0150.1	MA0150.1	0.00203
MA0152.1	MA0152.1	0.708
MA0153.1	MA0153.1	0.13
MA0154.1	MA0154.1	0.043
MA0155.1	MA0155.1	0.422
MA0156.1	MA0156.1	0.00706
MA0157.1	MA0157.1	0.208
MA0159.1	MA0159.1	0.384
MA0160.1	MA0160.1	0.337
MA0162.1	MA0162.1	0.449
MA0163.1	MA0163.1	0.0459
MA0164.1	MA0164.1	0.934
MA0258.1	MA0258.1	0.171
MA0259.1	MA0259.1	0.201

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs11878

Novel motif	Logo	P-value
1	1	0.46
10	10	0.631
100	100	0.481
101	101	0.955
102	102	0.875
103	103	0.0322
104	104	0.592
105	105	0.159
106	106	0.00259
107	107	0.19
108	108	0.824
109	109	0.264
11	11	0.384
110	110	0.572
111	111	0.648
112	112	0.112
113	113	0.0541
114	114	0.184
115	115	0.874
116	116	0.893
117	117	0.973
118	118	0.73
119	119	0.32
12	12	0.603
120	120	0.596
121	121	0.275
122	122	0.687
123	123	0.205
124	124	0.548
125	125	0.163
126	126	0.463
127	127	0.282
128	128	0.216
129	129	0.316
13	13	0.291
130	130	0.121
131	131	0.48
132	132	0.732
133	133	0.196
134	134	0.41
135	135	0.0143
136	136	0.207
137	137	0.478
138	138	0.167
139	139	0.0418
14	14	0.804
140	140	0.609
141	141	0.773
142	142	0.817
143	143	0.0535
144	144	0.892
145	145	0.302
146	146	0.261
147	147	0.879
148	148	0.081
149	149	0.0365
15	15	0.183
150	150	0.586
151	151	0.0839
152	152	0.0349
153	153	0.617
154	154	0.908
155	155	0.992
156	156	0.274
157	157	0.729
158	158	0.376
159	159	0.245
16	16	0.25
160	160	0.212
161	161	0.55
162	162	0.862
163	163	0.215
164	164	0.322
165	165	0.454
166	166	0.729
167	167	0.542
168	168	0.21
169	169	0.0124
17	17	0.196
18	18	0.168
19	19	0.163
2	2	0.12
20	20	0.656
21	21	0.819
22	22	0.107
23	23	0.0091
24	24	0.622
25	25	0.77
26	26	0.63
27	27	0.0869
28	28	0.715
29	29	0.956
3	3	0.518
30	30	0.331
31	31	0.605
32	32	0.0243
33	33	0.911
34	34	0.332
35	35	0.84
36	36	0.948
37	37	0.317
38	38	0.417
39	39	0.426
4	4	0.803
40	40	0.898
41	41	0.197
42	42	0.816
43	43	0.23
44	44	0.909
45	45	0.24
46	46	0.114
47	47	0.558
48	48	0.657
49	49	0.329
5	5	0.305
50	50	0.947
51	51	0.397
52	52	0.45
53	53	0.86
54	54	0.499
55	55	0.189
56	56	0.497
57	57	0.846
58	58	0.205
59	59	0.0676
6	6	0.475
60	60	0.0738
61	61	0.734
62	62	0.0999
63	63	0.208
64	64	0.583
65	65	0.0546
66	66	0.109
67	67	0.733
68	68	0.158
69	69	0.626
7	7	0.919
70	70	0.0192
71	71	0.146
72	72	0.424
73	73	0.0685
74	74	0.832
75	75	0.931
76	76	0.701
77	77	0.075
78	78	0.717
79	79	0.0227
8	8	0.278
80	80	0.0227
81	81	0.574
82	82	0.104
83	83	0.633
84	84	0.509
85	85	0.0212
86	86	0.587
87	87	0.519
88	88	0.42
89	89	0.0154
9	9	0.0419
90	90	0.72
91	91	0.513
92	92	0.032
93	93	0.384
94	94	0.281
95	95	0.399
96	96	0.197
97	97	0.761
98	98	0.927
99	99	0.986

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs11878

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
EFO:0002091 biological replicate
FF:0000210 human sample
FF:0100306 teratocarcinoma cell line sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000066 (epithelial cell)
0000255 (eukaryotic cell)

DOID: Disease
4 (disease)
162 (cancer)
14566 (disease of cellular proliferation)
0050687 (cell type cancer)
3095 (germ cell and embryonal cancer)
305 (carcinoma)
2994 (germ cell cancer)

FF: FANTOM5
0000102 (sample by type)
0000003 (cell line sample)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0100297 (carcinoma cell line sample)
0101120 (epithelial cell line sample)
0100306 (teratocarcinoma cell line sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
NA

@@ Line 1: / Line 1: @@
 {{f5samples
+|DRA_sample_Accession=CAGE@SAMD00005042
+|accession_numbers=CAGE;DRX008019;DRR008891;DRZ000316;DRZ001701;DRZ011666;DRZ013051
 |ancestors_in_anatomy_facet=
-|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000004,CL:0000012,CL:0000063,CL:0000066,CL:0000255,CL:0000548
+|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000066,CL:0000255
-|ancestors_in_disease_facet=DOID:0050687,DOID:14566,DOID:162,DOID:2994,DOID:305,DOID:3095,DOID:4
+|ancestors_in_disease_facet=DOID:4,DOID:162,DOID:14566,DOID:0050687,DOID:3095,DOID:305,DOID:2994
+|ancestors_in_ff_facet=FF:0000102,FF:0000003,FF:0000210,FF:0000101,FF:0000001,FF:0100297,FF:0101120,FF:0100306
 |comment=
 |created_by=
 |creation_date=
+|data_phase=2
+|datafreeze_phase=2
 |def=
 |expression_enrichment_score=chr3:181429704..181429722,+!p1@SOX2!2.19!154.83!SOX2;;chr6:10415484..10415508,-!p3@TFAP2A!2.15!140.84!TFAP2A;;chrX:136648279..136648295,+!p1@ZIC3!2.14!136.58!ZIC3;;chr20:31350184..31350200,+!p1@DNMT3B!2.10!251.75!DNMT3B;;chrX:136648643..136648711,+!p2@ZIC3!1.98!93.53!ZIC3;;chr14:57277178..57277203,-!p1@OTX2!1.89!76.27!OTX2;;chr6:31138439..31138475,-!p1@POU5F1!1.88!74.19!POU5F1;;chr5:2751762..2751784,-!p1@IRX2!1.87!73.10!IRX2;;chr6:10415276..10415341,-!p2@TFAP2A!1.84!83.15!TFAP2A;;chr12:8034651..8034657,+!p@chr12:8034651..8034657,+!1.78!58.68!NANOGP1;;chr1:164528687..164528711,+!p6@PBX1!1.73!61.63!PBX1;;chr3:181429741..181429767,+!p2@SOX2!1.73!52.88!SOX2;;chr5:153857778..153857794,-!p1@HAND1!1.72!51.35!HAND1;;chr15:57511609..57511651,+!p2@TCF12!1.68!77.25!TCF12;;chrX:136648297..136648319,+!p3@ZIC3!1.68!46.77!ZIC3;;chr5:2751785..2751808,-!p2@IRX2!1.66!44.91!IRX2;;chr12:19556998..19557013,+!p6@AEBP2!1.62!40.97!AEBP2;;chr6:10412600..10412637,-!p1@TFAP2A!1.57!58.57!TFAP2A;;chr8:70983476..70983493,-!p1@PRDM14!1.54!33.33!PRDM14;;chr8:37963466..37963506,+!p3@ASH2L!1.53!40.87!ASH2L;;chr2:16080659..16080685,+!p1@MYCN!1.52!32.34!MYCN;;chr10:135043702..135043729,+!p1@UTF1!1.47!28.30!UTF1;;chr2:16081912..16081931,+!p2@MYCN!1.44!26.77!MYCN;;chr7:96654133..96654150,-!p1@DLX5!1.43!25.90!DLX5;;chr4:188916918..188916942,+!p1@ZFP42!1.41!24.91!ZFP42;;chr1:151032922..151032951,+!p2@MLLT11!1.40!39.12!MLLT11;;chr6:391743..391759,+!p1@IRF4!1.40!24.26!IRF4;;chr20:50418972..50419029,-!p1@SALL4!1.38!22.95!SALL4;;chrX:136650899..136650918,+!p7@ZIC3!1.36!21.96!ZIC3;;chr5:3595977..3595999,+!p1@IRX1!1.36!21.74!IRX1;;chr10:70320074..70320106,+!p1@TET1!1.35!42.07!TET1;;chr2:25475120..25475176,-!p2@DNMT3A!1.35!28.96!DNMT3A;;chr1:158975744..158975769,+!p10@IFI16!1.33!20.54!IFI16;;chr19:20188776..20188826,+!p1@ZNF90!1.32!52.56!ZNF90;;chr2:5832508..5832524,+!p1@SOX11!1.32!20.00!SOX11;;chr19:22193731..22193751,-!p1@ZNF208!1.31!19.45!ZNF208;;chr4:53206..53260,+!p1@ZNF595,p1@ZNF718!1.30!177.34!ZNF595;;chr4:299227..299272,-!p1@ZNF732!1.30!18.90!ZNF732;;chr12:19556960..19556982,+!p10@AEBP2!1.27!17.81!AEBP2;;chr14:57272369..57272391,-!p2@OTX2!1.26!17.37!OTX2;;chr12:7941989..7942014,+!p1@NANOG!1.26!17.15!NANOG;;chr1:247171316..247171336,-!p3@ZNF695!1.25!25.02!ZNF695;;chr8:70983443..70983460,-!p2@PRDM14!1.25!16.61!PRDM14;;chrX:136648768..136648781,+!p6@ZIC3!1.22!15.41!ZIC3;;chr12:66218183..66218209,+!p4@HMGA2!1.19!27.43!HMGA2;;chrX:131547625..131547644,-!p4@MBNL3!1.19!14.64!MBNL3;;chr13:95364784..95364806,-!p1@SOX21!1.19!14.53!SOX21;;chr8:37963407..37963454,+!p2@ASH2L!1.18!41.96!ASH2L;;chr9:114287433..114287513,+!p1@ZNF483!1.18!36.82!ZNF483;;chrX:136648554..136648576,+!p4@ZIC3!1.18!14.10!ZIC3;;chr2:60780607..60780624,-!p2@BCL11A!1.17!41.74!BCL11A;;chr19:22817119..22817145,+!p1@ZNF492!1.15!21.85!ZNF492;;chr14:90085820..90085840,-!p6@FOXN3!1.15!13.11!FOXN3;;chr20:50419055..50419066,-!p3@SALL4!1.14!12.89!SALL4;;chr1:151032860..151032918,+!p1@MLLT11!1.12!143.90!MLLT11;;chr17:41623009..41623053,-!p4@ETV4!1.11!19.45!ETV4;;chr17:7493405..7493419,-!p1@SOX15!1.11!11.91!SOX15;;chr2:88752207..88752218,-!p1@FOXI3!1.11!11.91!FOXI3;;chrX:136648753..136648767,+!p5@ZIC3!1.10!11.47!ZIC3;;chr2:25475094..25475112,-!p3@DNMT3A!1.08!10.93!DNMT3A;;chr5:3595934..3595957,+!p2@IRX1!1.07!10.82!IRX1;;chr1:247171347..247171366,-!p2@ZNF695!1.06!19.34!ZNF695;;chr5:3595961..3595975,+!p3@IRX1!1.06!10.60!IRX1;;chrX:129402866..129402880,-!p1@ZNF280C!1.05!59.99!ZNF280C;;chr5:124082322..124082364,-!p1@ZNF608!1.05!26.44!ZNF608;;chr2:119604456..119604501,-!p2@EN1!1.04!10.05!EN1;;chr7:64023410..64023428,-!p2@ZNF680!1.03!15.62!ZNF680;;chrX:136648735..136648747,+!p9@ZIC3!1.03!9.83!ZIC3;;chr17:46132044..46132080,+!p4@NFE2L1!1.03!9.72!NFE2L1;;chr2:42795745..42795824,+!p1@MTA3!1.02!88.51!MTA3;;chr2:16082155..16082169,+!p3@MYCN!1.02!9.51!MYCN;;chr3:57234000..57234014,-!p1@HESX1!1.02!9.51!HESX1;;chrX:136648807..136648822,+!p8@ZIC3!1.02!9.51!ZIC3;;chr12:66218598..66218645,+!p2@HMGA2!1.01!43.16!HMGA2;;chr13:36871902..36872023,-!p1@CCDC169-SOHLH2,p1@CCDC169,p1@SOHLH2!1.01!20.54!SOHLH2;;chr2:60780753..60780800,-!p1@BCL11A!1.00!45.02!BCL11A;;chr17:41623692..41623715,-!p1@ETV4!1.00!39.66!ETV4;;chrX:84499081..84499115,+!p2@ZNF711!1.00!13.55!ZNF711;;chr12:66218212..66218244,+!p5@HMGA2!1.00!13.22!HMGA2;;chr6:15246261..15246312,+!p1@JARID2!0.99!216.78!JARID2;;chr19:23433144..23433204,-!p1@ZNF724P!0.99!39.88!ZNF724P;;chr12:66218152..66218174,+!p10@HMGA2!0.99!9.51!HMGA2;;chr7:64363638..64363667,+!p1@ZNF273!0.98!44.03!ZNF273;;chr17:41622925..41622976,-!p3@ETV4!0.98!13.00!ETV4;;chr1:151032957..151032968,+!p7@MLLT11!0.98!8.52!MLLT11;;chr18:56530136..56530199,+!p3@ZNF532!0.97!12.78!ZNF532;;chr7:63505799..63505904,+!p1@ZNF727!0.97!8.41!ZNF727;;chr19:58545454..58545498,+!p1@ZSCAN1!0.97!8.30!ZSCAN1;;chr12:7079780..7079791,-!p2@PHB2!0.96!43.71!PHB2;;chr9:86594530..86594564,-!p@chr9:86594530..86594564,-!0.96!31.80!HNRPK;;chr19:58400344..58400364,-!p2@ZNF814!0.96!12.02!ZNF814;;chr6:1378155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@@ Line 35: / Line 40: @@
 |fonse_treatment_closure=
 |has_quality=
+|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/teratocarcinoma%2520cell%2520line%253aNCC-IT-A3.CNhs11878.10790-110H7.hg19.nobarcode.bam
+|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/teratocarcinoma%2520cell%2520line%253aNCC-IT-A3.CNhs11878.10790-110H7.hg19.ctss.bed.gz
+|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/teratocarcinoma%2520cell%2520line%253aNCC-IT-A3.CNhs11878.10790-110H7.hg19.nobarcode.rdna.fa.gz
+|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/teratocarcinoma%2520cell%2520line%253aNCC-IT-A3.CNhs11878.10790-110H7.hg38.nobarcode.bam
+|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/teratocarcinoma%2520cell%2520line%253aNCC-IT-A3.CNhs11878.10790-110H7.hg38.nobarcode.ctss.bed.gz
 |id=FF:10790-110H7
-|is_a=EFO:0002091;;FF:0000003;;FF:0000210;;FF:0100306
+|is_a=EFO:0002091;;FF:0000210;;FF:0100306
+|is_obsolete=
+|library_id=CNhs11878
+|library_id_phase_based=2:CNhs11878
+|microRNAs=
+|microRNAs_nn=
+|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10790
+|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10790
 |name=teratocarcinoma cell line:NCC-IT-A3
 |namespace=FANTOM5
@@ Line 42: / Line 59: @@
 |profile_cagescan=,,,
 |profile_hcage=CNhs11878,LSID830,release010,COMPLETED
-|profile_rnaseq=,,,
+|profile_rnaseq=
 |profile_srnaseq=,,,
+|refex=http://refex.dbcls.jp/genelist.php?lang
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 |rna_box=110
 |rna_catalog_number=
@@ Line 57: / Line 77: @@
 |rna_weight_ug=147.03525
 |sample_age=24
+|sample_category=cell lines
 |sample_cell_catalog=jcrb1005
 |sample_cell_line=NCC-IT-A3
@@ Line 69: / Line 90: @@
 |sample_ethnicity=J
 |sample_experimental_condition=
+|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;4.80562312203369e-294!GO:0043226;organelle;2.50028369730795e-251!GO:0043229;intracellular organelle;7.46017490660452e-251!GO:0043231;intracellular membrane-bound organelle;1.89472980349739e-249!GO:0043227;membrane-bound organelle;3.26671420092928e-249!GO:0005737;cytoplasm;1.17380845927772e-172!GO:0044422;organelle part;6.91367745050602e-170!GO:0044446;intracellular organelle part;9.99083567576835e-169!GO:0005634;nucleus;1.11220937065329e-129!GO:0044237;cellular metabolic process;3.65671370134318e-118!GO:0044238;primary metabolic process;1.44339692896543e-116!GO:0044444;cytoplasmic part;4.67482855345602e-114!GO:0032991;macromolecular complex;4.8806377570815e-113!GO:0043170;macromolecule metabolic process;3.60819872941909e-111!GO:0030529;ribonucleoprotein complex;7.02991043958669e-104!GO:0044428;nuclear part;3.71388567674308e-96!GO:0003723;RNA binding;4.27442418907347e-94!GO:0043233;organelle lumen;6.57938982171459e-92!GO:0031974;membrane-enclosed lumen;6.57938982171459e-92!GO:0005739;mitochondrion;4.64688947653794e-77!GO:0043283;biopolymer metabolic process;1.49666704690924e-75!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;3.98459002459704e-72!GO:0006396;RNA processing;3.79497157338379e-70!GO:0010467;gene expression;6.69538890364004e-68!GO:0005515;protein binding;4.07374507461369e-64!GO:0031981;nuclear lumen;1.34724346802343e-58!GO:0016043;cellular component organization and biogenesis;2.69218412989711e-57!GO:0005840;ribosome;2.94720828927202e-56!GO:0043234;protein complex;3.61138888432757e-54!GO:0006412;translation;1.16771360078602e-53!GO:0044429;mitochondrial part;2.58658739186834e-53!GO:0003676;nucleic acid binding;2.21129562198631e-51!GO:0016071;mRNA metabolic process;1.9067627231643e-50!GO:0043228;non-membrane-bound organelle;6.78200893371774e-48!GO:0043232;intracellular non-membrane-bound organelle;6.78200893371774e-48!GO:0003735;structural constituent of ribosome;1.63142922833931e-47!GO:0008380;RNA splicing;2.0271915335588e-47!GO:0031967;organelle envelope;8.24578891724725e-47!GO:0031975;envelope;1.84888176652542e-46!GO:0033036;macromolecule localization;3.2165108640606e-46!GO:0006996;organelle organization and biogenesis;1.57523902772973e-45!GO:0015031;protein transport;3.74046403895132e-45!GO:0031090;organelle membrane;4.89186114099806e-45!GO:0006259;DNA metabolic process;1.62340158931183e-44!GO:0019538;protein metabolic process;2.72048347500626e-44!GO:0006397;mRNA processing;9.67466745420312e-43!GO:0044249;cellular biosynthetic process;2.34633680918269e-42!GO:0009058;biosynthetic process;3.22677291361155e-42!GO:0022613;ribonucleoprotein complex biogenesis and assembly;9.43517149793651e-42!GO:0033279;ribosomal subunit;9.72421053946789e-42!GO:0008104;protein localization;1.10467271647603e-40!GO:0045184;establishment of protein localization;2.75007702073677e-40!GO:0016070;RNA metabolic process;4.08289634398394e-39!GO:0044260;cellular macromolecule metabolic process;4.17387013389197e-39!GO:0065003;macromolecular complex assembly;4.44674243212049e-39!GO:0009059;macromolecule biosynthetic process;4.87593252844461e-39!GO:0044267;cellular protein metabolic process;5.4830260772435e-39!GO:0046907;intracellular transport;2.76097020816569e-37!GO:0005654;nucleoplasm;1.36390918216427e-34!GO:0022607;cellular component assembly;2.12855366695058e-34!GO:0005681;spliceosome;7.47775219996903e-34!GO:0000166;nucleotide binding;1.16155239831086e-32!GO:0007049;cell cycle;1.64400415309064e-32!GO:0005740;mitochondrial envelope;3.9418393549828e-32!GO:0019866;organelle inner membrane;8.23655453775022e-32!GO:0006886;intracellular protein transport;2.42843978425867e-30!GO:0031966;mitochondrial membrane;8.49299021701926e-30!GO:0005829;cytosol;1.96735258991876e-29!GO:0005743;mitochondrial inner membrane;3.20837873581654e-29!GO:0005830;cytosolic ribosome (sensu Eukaryota);5.09994709337812e-29!GO:0044451;nucleoplasm part;1.04176447620127e-27!GO:0006974;response to DNA damage stimulus;2.33669922948218e-27!GO:0005694;chromosome;1.2167763484916e-26!GO:0005730;nucleolus;2.0062141580164e-26!GO:0051649;establishment of cellular localization;1.44071444760672e-25!GO:0031980;mitochondrial lumen;2.35385265134083e-25!GO:0005759;mitochondrial matrix;2.35385265134083e-25!GO:0000278;mitotic cell cycle;3.79659169556599e-25!GO:0051641;cellular localization;1.03471255637083e-24!GO:0022402;cell cycle process;2.12614748654227e-24!GO:0006119;oxidative phosphorylation;5.48942760790623e-24!GO:0044427;chromosomal part;1.55830293335719e-23!GO:0006281;DNA repair;2.12141804681173e-23!GO:0016462;pyrophosphatase activity;3.52491255528062e-23!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;4.13091622275354e-23!GO:0016817;hydrolase activity, acting on acid anhydrides;5.51573840848139e-23!GO:0016874;ligase activity;6.64469484773406e-23!GO:0044455;mitochondrial membrane part;1.33254601023992e-22!GO:0017111;nucleoside-triphosphatase activity;2.64771521138684e-22!GO:0044445;cytosolic part;3.00326645628789e-22!GO:0032553;ribonucleotide binding;4.26098501006242e-22!GO:0032555;purine ribonucleotide binding;4.26098501006242e-22!GO:0051276;chromosome organization and biogenesis;7.38645910133346e-22!GO:0022618;protein-RNA complex assembly;7.80799793287989e-22!GO:0015935;small ribosomal subunit;1.66233976015474e-21!GO:0015934;large ribosomal subunit;2.35326243087196e-21!GO:0000087;M phase of mitotic cell cycle;5.75013011962534e-21!GO:0017076;purine nucleotide binding;6.7069382151279e-21!GO:0022403;cell cycle phase;9.75407499679319e-21!GO:0006512;ubiquitin cycle;1.28441896194985e-20!GO:0007067;mitosis;1.44937249748786e-20!GO:0042254;ribosome biogenesis and assembly;4.58842482706955e-20!GO:0044265;cellular macromolecule catabolic process;9.13152473415859e-20!GO:0051301;cell division;1.64472904574269e-19!GO:0006457;protein folding;2.9536599169849e-19!GO:0005524;ATP binding;3.62672089530083e-19!GO:0006260;DNA replication;6.13962865606717e-19!GO:0032559;adenyl ribonucleotide binding;1.37326759380329e-18!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;7.3778020150309e-18!GO:0005746;mitochondrial respiratory chain;1.01483738239237e-17!GO:0000279;M phase;1.0554963105787e-17!GO:0008135;translation factor activity, nucleic acid binding;1.1835063300419e-17!GO:0051603;proteolysis involved in cellular protein catabolic process;1.54336447482731e-17!GO:0005761;mitochondrial ribosome;1.65023361756262e-17!GO:0000313;organellar ribosome;1.65023361756262e-17!GO:0006511;ubiquitin-dependent protein catabolic process;2.1259145769692e-17!GO:0006325;establishment and/or maintenance of chromatin architecture;2.49061096787017e-17!GO:0019941;modification-dependent protein catabolic process;2.85850374920147e-17!GO:0043632;modification-dependent macromolecule catabolic process;2.85850374920147e-17!GO:0030554;adenyl nucleotide binding;3.17534415549701e-17!GO:0044257;cellular protein catabolic process;5.05445400692718e-17!GO:0000398;nuclear mRNA splicing, via spliceosome;7.0939857711115e-17!GO:0000375;RNA splicing, via transesterification reactions;7.0939857711115e-17!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;7.0939857711115e-17!GO:0009719;response to endogenous stimulus;7.99441573962939e-17!GO:0044453;nuclear membrane part;8.34007829221228e-17!GO:0050136;NADH dehydrogenase (quinone) activity;1.0475379070913e-16!GO:0003954;NADH dehydrogenase activity;1.0475379070913e-16!GO:0008137;NADH dehydrogenase (ubiquinone) activity;1.0475379070913e-16!GO:0006323;DNA packaging;1.08302038542513e-16!GO:0031965;nuclear membrane;2.02417417859938e-16!GO:0043285;biopolymer catabolic process;2.33264311672956e-16!GO:0012505;endomembrane system;3.06323411668689e-16!GO:0006605;protein targeting;4.44637848741011e-16!GO:0009057;macromolecule catabolic process;7.34598462326424e-16!GO:0006403;RNA localization;9.62942038730194e-16!GO:0006399;tRNA metabolic process;1.20486891609366e-15!GO:0044248;cellular catabolic process;1.49480299875829e-15!GO:0005643;nuclear pore;1.50531136423738e-15!GO:0050657;nucleic acid transport;2.10378842716488e-15!GO:0051236;establishment of RNA localization;2.10378842716488e-15!GO:0050658;RNA transport;2.10378842716488e-15!GO:0005635;nuclear envelope;2.68171717106331e-15!GO:0051186;cofactor metabolic process;2.96860206870046e-15!GO:0042775;organelle ATP synthesis coupled electron transport;3.20945969729976e-15!GO:0042773;ATP synthesis coupled electron transport;3.20945969729976e-15!GO:0004386;helicase activity;4.2140072922406e-15!GO:0008134;transcription factor binding;5.89184122546782e-15!GO:0030964;NADH dehydrogenase complex (quinone);9.29134741172787e-15!GO:0045271;respiratory chain complex I;9.29134741172787e-15!GO:0005747;mitochondrial respiratory chain complex I;9.29134741172787e-15!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);1.33678810093448e-14!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);1.50393874792854e-14!GO:0048770;pigment granule;2.26941619084677e-14!GO:0042470;melanosome;2.26941619084677e-14!GO:0016887;ATPase activity;2.39474118206367e-14!GO:0043412;biopolymer modification;2.67633871237468e-14!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;2.70490314997498e-14!GO:0042623;ATPase activity, coupled;2.9759049079413e-14!GO:0006364;rRNA processing;3.85108087443967e-14!GO:0065002;intracellular protein transport across a membrane;5.04186990330742e-14!GO:0006413;translational initiation;7.507755717454e-14!GO:0016604;nuclear body;9.02051793771494e-14!GO:0016072;rRNA metabolic process;1.40333636610064e-13!GO:0051028;mRNA transport;1.60473548498564e-13!GO:0000502;proteasome complex (sensu Eukaryota);2.08532493342431e-13!GO:0003743;translation initiation factor activity;2.16407661563102e-13!GO:0030163;protein catabolic process;2.1886930491561e-13!GO:0051082;unfolded protein binding;2.23937842068222e-13!GO:0006913;nucleocytoplasmic transport;2.93839136837338e-13!GO:0065004;protein-DNA complex assembly;3.33472042682074e-13!GO:0000785;chromatin;3.43073582276319e-13!GO:0008026;ATP-dependent helicase activity;3.51324224040898e-13!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;4.61671591069545e-13!GO:0006732;coenzyme metabolic process;6.44180109551079e-13!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;8.32422319026849e-13!GO:0051169;nuclear transport;9.79807360440278e-13!GO:0015630;microtubule cytoskeleton;1.35732024749931e-12!GO:0006446;regulation of translational initiation;1.53469959957534e-12!GO:0046930;pore complex;4.43689764364178e-12!GO:0008565;protein transporter activity;7.74363432801555e-12!GO:0006464;protein modification process;1.04859104991639e-11!GO:0016607;nuclear speck;1.06325947491885e-11!GO:0005794;Golgi apparatus;1.08286207480204e-11!GO:0048193;Golgi vesicle transport;1.22802798688924e-11!GO:0009259;ribonucleotide metabolic process;1.8450383772852e-11!GO:0006163;purine nucleotide metabolic process;2.52715424174331e-11!GO:0006333;chromatin assembly or disassembly;5.02088517620048e-11!GO:0016879;ligase activity, forming carbon-nitrogen bonds;5.6922428208304e-11!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;5.73873297285391e-11!GO:0004812;aminoacyl-tRNA ligase activity;5.73873297285391e-11!GO:0016875;ligase activity, forming carbon-oxygen bonds;5.73873297285391e-11!GO:0000074;regulation of progression through cell cycle;1.01057504522095e-10!GO:0051726;regulation of cell cycle;1.07738348502937e-10!GO:0006261;DNA-dependent DNA replication;1.33509679302632e-10!GO:0043687;post-translational protein modification;1.34064628831551e-10!GO:0006164;purine nucleotide biosynthetic process;1.7612307455403e-10!GO:0030532;small nuclear ribonucleoprotein complex;1.7630359365541e-10!GO:0043038;amino acid activation;2.14307675688839e-10!GO:0006418;tRNA aminoacylation for protein translation;2.14307675688839e-10!GO:0043039;tRNA aminoacylation;2.14307675688839e-10!GO:0009150;purine ribonucleotide metabolic process;2.6415242947821e-10!GO:0017038;protein import;2.72327417789615e-10!GO:0009260;ribonucleotide biosynthetic process;3.71888051612471e-10!GO:0006461;protein complex assembly;5.55190713797842e-10!GO:0000775;chromosome, pericentric region;5.65165629917896e-10!GO:0019222;regulation of metabolic process;6.79185380178898e-10!GO:0050794;regulation of cellular process;7.05929546171729e-10!GO:0016740;transferase activity;9.24744477367379e-10!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;9.44033391711473e-10!GO:0008639;small protein conjugating enzyme activity;1.35264059434762e-09!GO:0043566;structure-specific DNA binding;1.56793164823857e-09!GO:0009152;purine ribonucleotide biosynthetic process;1.80024375722146e-09!GO:0005783;endoplasmic reticulum;2.00397459144202e-09!GO:0009055;electron carrier activity;2.04660884362245e-09!GO:0016779;nucleotidyltransferase activity;2.08719452513558e-09!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;3.15228658854845e-09!GO:0004842;ubiquitin-protein ligase activity;3.23465544300936e-09!GO:0019787;small conjugating protein ligase activity;3.34876521193213e-09!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;3.36157248609331e-09!GO:0016568;chromatin modification;3.61621105703736e-09!GO:0003697;single-stranded DNA binding;4.05031238278471e-09!GO:0003712;transcription cofactor activity;6.00648285586174e-09!GO:0006366;transcription from RNA polymerase II promoter;6.11880833691551e-09!GO:0031497;chromatin assembly;9.71158523385559e-09!GO:0006334;nucleosome assembly;1.04677589058864e-08!GO:0009199;ribonucleoside triphosphate metabolic process;1.05821138761367e-08!GO:0009141;nucleoside triphosphate metabolic process;1.24725147960927e-08!GO:0008094;DNA-dependent ATPase activity;1.27809291014986e-08!GO:0016192;vesicle-mediated transport;1.41310983179062e-08!GO:0044432;endoplasmic reticulum part;1.50908894434818e-08!GO:0003899;DNA-directed RNA polymerase activity;1.92946095902259e-08!GO:0009142;nucleoside triphosphate biosynthetic process;2.0611003987929e-08!GO:0009201;ribonucleoside triphosphate biosynthetic process;2.0611003987929e-08!GO:0009205;purine ribonucleoside triphosphate metabolic process;2.61642151297149e-08!GO:0009144;purine nucleoside triphosphate metabolic process;2.61642151297149e-08!GO:0015986;ATP synthesis coupled proton transport;2.75224872743801e-08!GO:0015985;energy coupled proton transport, down electrochemical gradient;2.75224872743801e-08!GO:0051188;cofactor biosynthetic process;3.0859657232228e-08!GO:0009060;aerobic respiration;3.39565925116571e-08!GO:0043623;cellular protein complex assembly;4.34911926815278e-08!GO:0009056;catabolic process;4.68082907375602e-08!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;5.34468205170256e-08!GO:0009145;purine nucleoside triphosphate biosynthetic process;5.34468205170256e-08!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;5.34468205170256e-08!GO:0006350;transcription;5.58676044812595e-08!GO:0016881;acid-amino acid ligase activity;6.04548142953524e-08!GO:0005819;spindle;6.89254259882488e-08!GO:0045333;cellular respiration;9.30181242437536e-08!GO:0005657;replication fork;1.02948328349279e-07!GO:0031323;regulation of cellular metabolic process;1.0526442684896e-07!GO:0000245;spliceosome assembly;1.15817329240587e-07!GO:0007051;spindle organization and biogenesis;1.49010594724221e-07!GO:0007005;mitochondrion organization and biogenesis;1.63901355626699e-07!GO:0005793;ER-Golgi intermediate compartment;1.99008804530148e-07!GO:0003724;RNA helicase activity;2.01178831474208e-07!GO:0006752;group transfer coenzyme metabolic process;2.29739993541689e-07!GO:0046034;ATP metabolic process;2.5399082992042e-07!GO:0031202;RNA splicing factor activity, transesterification mechanism;2.74964974198642e-07!GO:0005813;centrosome;2.76730861007717e-07!GO:0009117;nucleotide metabolic process;4.32926962022018e-07!GO:0006754;ATP biosynthetic process;4.37668803228219e-07!GO:0006753;nucleoside phosphate metabolic process;4.37668803228219e-07!GO:0051329;interphase of mitotic cell cycle;5.38258173152817e-07!GO:0045259;proton-transporting ATP synthase complex;5.38957281639935e-07!GO:0006099;tricarboxylic acid cycle;5.83666639162522e-07!GO:0046356;acetyl-CoA catabolic process;5.83666639162522e-07!GO:0009108;coenzyme biosynthetic process;5.8686452161998e-07!GO:0006888;ER to Golgi vesicle-mediated transport;6.51394874756297e-07!GO:0051170;nuclear import;7.13115236389666e-07!GO:0006084;acetyl-CoA metabolic process;7.84482982028658e-07!GO:0019829;cation-transporting ATPase activity;9.46462515884538e-07!GO:0005815;microtubule organizing center;9.9753551473276e-07!GO:0048475;coated membrane;1.00228019846117e-06!GO:0030117;membrane coat;1.00228019846117e-06!GO:0010468;regulation of gene expression;1.01121856640735e-06!GO:0016469;proton-transporting two-sector ATPase complex;1.01487923372305e-06!GO:0044452;nucleolar part;1.04522411523782e-06!GO:0008033;tRNA processing;1.10292950882196e-06!GO:0000075;cell cycle checkpoint;1.31860360305502e-06!GO:0032446;protein modification by small protein conjugation;1.46233029626514e-06!GO:0005667;transcription factor complex;1.48952620258864e-06!GO:0051325;interphase;1.63850979888528e-06!GO:0032774;RNA biosynthetic process;1.64993409842321e-06!GO:0051168;nuclear export;1.77106683189782e-06!GO:0006606;protein import into nucleus;1.9004093560524e-06!GO:0006351;transcription, DNA-dependent;2.23401659624211e-06!GO:0016853;isomerase activity;2.30157364929306e-06!GO:0016741;transferase activity, transferring one-carbon groups;2.505853617571e-06!GO:0005762;mitochondrial large ribosomal subunit;2.95483663194305e-06!GO:0000315;organellar large ribosomal subunit;2.95483663194305e-06!GO:0015078;hydrogen ion transmembrane transporter activity;3.1677549789479e-06!GO:0016567;protein ubiquitination;3.17953580841563e-06!GO:0050789;regulation of biological process;3.2554513939018e-06!GO:0008168;methyltransferase activity;3.31117653894464e-06!GO:0019219;regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;3.39845030037854e-06!GO:0030120;vesicle coat;3.8462269079665e-06!GO:0030662;coated vesicle membrane;3.8462269079665e-06!GO:0042175;nuclear envelope-endoplasmic reticulum network;4.03895277001037e-06!GO:0009109;coenzyme catabolic process;4.23957184344638e-06!GO:0000151;ubiquitin ligase complex;4.48825322324108e-06!GO:0051246;regulation of protein metabolic process;4.65158111268818e-06!GO:0005789;endoplasmic reticulum membrane;5.02827432542029e-06!GO:0003690;double-stranded DNA binding;5.74561466555501e-06!GO:0005768;endosome;5.88757120543657e-06!GO:0016772;transferase activity, transferring phosphorus-containing groups;6.03455875953901e-06!GO:0012501;programmed cell death;7.35844673605163e-06!GO:0003924;GTPase activity;7.7522854153474e-06!GO:0008186;RNA-dependent ATPase activity;7.99323400571358e-06!GO:0006302;double-strand break repair;8.253881710438e-06!GO:0005874;microtubule;9.0949933670778e-06!GO:0000776;kinetochore;9.2639249736815e-06!GO:0006915;apoptosis;9.92988578459622e-06!GO:0006793;phosphorus metabolic process;1.0211666788074e-05!GO:0006796;phosphate metabolic process;1.0211666788074e-05!GO:0007010;cytoskeleton organization and biogenesis;1.11890920301716e-05!GO:0000314;organellar small ribosomal subunit;1.35106488334498e-05!GO:0005763;mitochondrial small ribosomal subunit;1.35106488334498e-05!GO:0005525;GTP binding;1.48406080488516e-05!GO:0051187;cofactor catabolic process;1.62417269326299e-05!GO:0003677;DNA binding;1.65576363696173e-05!GO:0006613;cotranslational protein targeting to membrane;1.7188500079385e-05!GO:0044431;Golgi apparatus part;1.93149136080384e-05!GO:0051427;hormone receptor binding;2.26915296876589e-05!GO:0000059;protein import into nucleus, docking;2.41356150414582e-05!GO:0004004;ATP-dependent RNA helicase activity;2.52904009292527e-05!GO:0016363;nuclear matrix;2.70278280525632e-05!GO:0008654;phospholipid biosynthetic process;2.76060938557746e-05!GO:0006383;transcription from RNA polymerase III promoter;2.94779419026054e-05!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;3.53695552115644e-05!GO:0003678;DNA helicase activity;3.58149263515593e-05!GO:0007017;microtubule-based process;3.72073244783742e-05!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;4.07671306936695e-05!GO:0031988;membrane-bound vesicle;4.23622191799814e-05!GO:0051052;regulation of DNA metabolic process;4.26853877133076e-05!GO:0003682;chromatin binding;4.46739302195224e-05!GO:0007059;chromosome segregation;4.62230965479191e-05!GO:0016310;phosphorylation;4.71072721244565e-05!GO:0016023;cytoplasmic membrane-bound vesicle;4.71913518034108e-05!GO:0003729;mRNA binding;5.05405327001998e-05!GO:0035257;nuclear hormone receptor binding;5.09102239440165e-05!GO:0031252;leading edge;5.23962716887487e-05!GO:0016859;cis-trans isomerase activity;5.61349445238235e-05!GO:0005798;Golgi-associated vesicle;6.19402133514794e-05!GO:0005770;late endosome;6.77982739823226e-05!GO:0030880;RNA polymerase complex;6.89214972278353e-05!GO:0045449;regulation of transcription;8.59850908025712e-05!GO:0006402;mRNA catabolic process;9.17037424002842e-05!GO:0016251;general RNA polymerase II transcription factor activity;9.17174916837716e-05!GO:0006357;regulation of transcription from RNA polymerase II promoter;9.72713060921846e-05!GO:0044440;endosomal part;9.80052640082748e-05!GO:0010008;endosome membrane;9.80052640082748e-05!GO:0015077;monovalent inorganic cation transmembrane transporter activity;9.8357582376221e-05!GO:0006352;transcription initiation;0.000101846968570029!GO:0006401;RNA catabolic process;0.000104940406023255!GO:0032561;guanyl ribonucleotide binding;0.000113604391353681!GO:0019001;guanyl nucleotide binding;0.000113604391353681!GO:0003713;transcription coactivator activity;0.000113786348302397!GO:0000226;microtubule cytoskeleton organization and biogenesis;0.000114340236287314!GO:0043021;ribonucleoprotein binding;0.00011727076265668!GO:0008219;cell death;0.000117441043880518!GO:0016265;death;0.000117441043880518!GO:0006310;DNA recombination;0.000123274770105394!GO:0031982;vesicle;0.000127984346187076!GO:0006626;protein targeting to mitochondrion;0.000138569784264997!GO:0007093;mitotic cell cycle checkpoint;0.00013993615187471!GO:0000786;nucleosome;0.000142122788767658!GO:0043681;protein import into mitochondrion;0.000144431910398226!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.000145597372693256!GO:0031410;cytoplasmic vesicle;0.000160914539377198!GO:0015980;energy derivation by oxidation of organic compounds;0.000164477892020049!GO:0032508;DNA duplex unwinding;0.000166770148274354!GO:0032392;DNA geometric change;0.000166770148274354!GO:0007088;regulation of mitosis;0.000168359988272494!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.000169642653153601!GO:0000428;DNA-directed RNA polymerase complex;0.000169642653153601!GO:0006839;mitochondrial transport;0.00018225825241771!GO:0006612;protein targeting to membrane;0.000185535262328909!GO:0031324;negative regulation of cellular metabolic process;0.000207648679485705!GO:0006520;amino acid metabolic process;0.000214190152023436!GO:0009165;nucleotide biosynthetic process;0.000224299218907705!GO:0007052;mitotic spindle organization and biogenesis;0.000233143870825032!GO:0006355;regulation of transcription, DNA-dependent;0.000239496178891546!GO:0000049;tRNA binding;0.000250694284289292!GO:0005839;proteasome core complex (sensu Eukaryota);0.00025985455967384!GO:0015631;tubulin binding;0.000288933471754683!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.000291925079430908!GO:0046474;glycerophospholipid biosynthetic process;0.000291993345125825!GO:0045454;cell redox homeostasis;0.000307072719675622!GO:0016281;eukaryotic translation initiation factor 4F complex;0.000310312111743508!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.000324014839871237!GO:0003684;damaged DNA binding;0.000332876303586276!GO:0016787;hydrolase activity;0.000337559614537217!GO:0005769;early endosome;0.000339624524304724!GO:0045786;negative regulation of progression through cell cycle;0.000368684742906295!GO:0007006;mitochondrial membrane organization and biogenesis;0.000383064458247004!GO:0030027;lamellipodium;0.000392280403533583!GO:0048523;negative regulation of cellular process;0.000398378277812618!GO:0005684;U2-dependent spliceosome;0.000398378277812618!GO:0051087;chaperone binding;0.000398860566093216!GO:0000139;Golgi membrane;0.000422832570963354!GO:0006405;RNA export from nucleus;0.000423607978837257!GO:0008652;amino acid biosynthetic process;0.000458597061380522!GO:0031072;heat shock protein binding;0.0004732032804465!GO:0030867;rough endoplasmic reticulum membrane;0.000493363273840786!GO:0016126;sterol biosynthetic process;0.000505775323549091!GO:0006268;DNA unwinding during replication;0.000531223276981391!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.00055874448029657!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.000583822562064369!GO:0009892;negative regulation of metabolic process;0.000694573753810434!GO:0004298;threonine endopeptidase activity;0.000746620375107826!GO:0006144;purine base metabolic process;0.000755853609144806!GO:0006338;chromatin remodeling;0.000787678050740955!GO:0051920;peroxiredoxin activity;0.000805816342046199!GO:0000725;recombinational repair;0.000810469052164349!GO:0000724;double-strand break repair via homologous recombination;0.000810469052164349!GO:0006414;translational elongation;0.000826571509701222!GO:0005885;Arp2/3 protein complex;0.000842843231468045!GO:0008250;oligosaccharyl transferase complex;0.000896806448364041!GO:0006275;regulation of DNA replication;0.000944225132863707!GO:0030521;androgen receptor signaling pathway;0.000958678117632381!GO:0005758;mitochondrial intermembrane space;0.00101140138823095!GO:0003714;transcription corepressor activity;0.00101140138823095!GO:0016564;transcription repressor activity;0.00101984544806841!GO:0009112;nucleobase metabolic process;0.00104353132304103!GO:0006541;glutamine metabolic process;0.00106567202706669!GO:0005637;nuclear inner membrane;0.00106856756900371!GO:0008270;zinc ion binding;0.00107233807389578!GO:0031970;organelle envelope lumen;0.00108460978526787!GO:0043069;negative regulation of programmed cell death;0.00111749561550059!GO:0004527;exonuclease activity;0.00112787173156769!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00112787173156769!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00112787173156769!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00112787173156769!GO:0016563;transcription activator activity;0.00115633589715237!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.00121406264600719!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.00121406264600719!GO:0046483;heterocycle metabolic process;0.0012725856229404!GO:0005852;eukaryotic translation initiation factor 3 complex;0.00130606044029579!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.00131670435729844!GO:0043066;negative regulation of apoptosis;0.0013190262034446!GO:0032259;methylation;0.00141497311168021!GO:0005788;endoplasmic reticulum lumen;0.00143990365044515!GO:0000184;mRNA catabolic process, nonsense-mediated decay;0.00145646885398779!GO:0006611;protein export from nucleus;0.00146567093220534!GO:0005876;spindle microtubule;0.00153447768585444!GO:0046489;phosphoinositide biosynthetic process;0.00154575435979928!GO:0048471;perinuclear region of cytoplasm;0.00160365717877969!GO:0005048;signal sequence binding;0.00162241645589691!GO:0006916;anti-apoptosis;0.00166028134856203!GO:0040029;regulation of gene expression, epigenetic;0.00172635325743653!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.00179819701604459!GO:0005741;mitochondrial outer membrane;0.00181493229930939!GO:0004576;oligosaccharyl transferase activity;0.00181580135375126!GO:0030118;clathrin coat;0.0018377524995722!GO:0019783;small conjugating protein-specific protease activity;0.00185703107893305!GO:0008092;cytoskeletal protein binding;0.00187435286206343!GO:0003711;transcription elongation regulator activity;0.00196334631200237!GO:0031968;organelle outer membrane;0.00202497793350307!GO:0048500;signal recognition particle;0.00208422788328063!GO:0019899;enzyme binding;0.00219254509262237!GO:0000792;heterochromatin;0.00222651636097982!GO:0004518;nuclease activity;0.00223501735687259!GO:0019867;outer membrane;0.00227806269843269!GO:0005669;transcription factor TFIID complex;0.00228045038454653!GO:0035258;steroid hormone receptor binding;0.00230015362985044!GO:0006695;cholesterol biosynthetic process;0.00239333775083389!GO:0006284;base-excision repair;0.00251399049909167!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;0.00266206029436719!GO:0043596;nuclear replication fork;0.00266562182846923!GO:0000339;RNA cap binding;0.00273196818412652!GO:0043414;biopolymer methylation;0.00281686712496831!GO:0004003;ATP-dependent DNA helicase activity;0.00294933193308939!GO:0006595;polyamine metabolic process;0.0030153384357648!GO:0042981;regulation of apoptosis;0.00302749357254987!GO:0000096;sulfur amino acid metabolic process;0.00306081725363313!GO:0008312;7S RNA binding;0.00316638177636598!GO:0004843;ubiquitin-specific protease activity;0.00316867987505402!GO:0046467;membrane lipid biosynthetic process;0.00320223117382631!GO:0051539;4 iron, 4 sulfur cluster binding;0.00326648403286763!GO:0043067;regulation of programmed cell death;0.00326760489556374!GO:0051252;regulation of RNA metabolic process;0.00340250375734643!GO:0006730;one-carbon compound metabolic process;0.00348596615996851!GO:0009451;RNA modification;0.00375346340449434!GO:0048487;beta-tubulin binding;0.00386102603193576!GO:0008180;signalosome;0.0040133393522295!GO:0006270;DNA replication initiation;0.00402674569566823!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.00402674569566823!GO:0016481;negative regulation of transcription;0.00403231324288973!GO:0000228;nuclear chromosome;0.00409818816852308!GO:0000152;nuclear ubiquitin ligase complex;0.00424059438655509!GO:0042393;histone binding;0.00429825664179461!GO:0045045;secretory pathway;0.00452636773673382!GO:0007264;small GTPase mediated signal transduction;0.0045414993841563!GO:0051053;negative regulation of DNA metabolic process;0.00455690743088871!GO:0006519;amino acid and derivative metabolic process;0.00494247912300619!GO:0004221;ubiquitin thiolesterase activity;0.00505691695739429!GO:0033116;ER-Golgi intermediate compartment membrane;0.00544800493580197!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.00547115952964494!GO:0045047;protein targeting to ER;0.00547115952964494!GO:0006007;glucose catabolic process;0.00549367963618637!GO:0030658;transport vesicle membrane;0.00563747228190073!GO:0048519;negative regulation of biological process;0.00567707176276251!GO:0007021;tubulin folding;0.00570769904774001!GO:0032200;telomere organization and biogenesis;0.00586796266516329!GO:0000723;telomere maintenance;0.00586796266516329!GO:0009116;nucleoside metabolic process;0.00594850314485303!GO:0016891;endoribonuclease activity, producing 5'-phosphomonoesters;0.006020045597428!GO:0042158;lipoprotein biosynthetic process;0.00625120399740559!GO:0006650;glycerophospholipid metabolic process;0.00629452825034155!GO:0051540;metal cluster binding;0.0065464867301588!GO:0051536;iron-sulfur cluster binding;0.0065464867301588!GO:0005665;DNA-directed RNA polymerase II, core complex;0.00665460452183616!GO:0016272;prefoldin complex;0.00669054222125441!GO:0000082;G1/S transition of mitotic cell cycle;0.00682852239992566!GO:0030119;AP-type membrane coat adaptor complex;0.00683960302057968!GO:0018196;peptidyl-asparagine modification;0.00683960302057968!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.00683960302057968!GO:0005791;rough endoplasmic reticulum;0.0071321988827927!GO:0030663;COPI coated vesicle membrane;0.00724268548463489!GO:0030126;COPI vesicle coat;0.00724268548463489!GO:0003746;translation elongation factor activity;0.00731531492193928!GO:0008757;S-adenosylmethionine-dependent methyltransferase activity;0.00746221244773173!GO:0009124;nucleoside monophosphate biosynthetic process;0.00751609799664413!GO:0009123;nucleoside monophosphate metabolic process;0.00751609799664413!GO:0031570;DNA integrity checkpoint;0.00751609799664413!GO:0006378;mRNA polyadenylation;0.00767838073889502!GO:0006497;protein amino acid lipidation;0.00788887752511745!GO:0005832;chaperonin-containing T-complex;0.0080743628243267!GO:0043624;cellular protein complex disassembly;0.00809364166585937!GO:0000079;regulation of cyclin-dependent protein kinase activity;0.00809658251423614!GO:0000922;spindle pole;0.00817207504262815!GO:0019752;carboxylic acid metabolic process;0.00835587472218897!GO:0043601;nuclear replisome;0.0084551153669028!GO:0030894;replisome;0.0084551153669028!GO:0007007;inner mitochondrial membrane organization and biogenesis;0.00846104518719692!GO:0008022;protein C-terminus binding;0.00861077574563912!GO:0000097;sulfur amino acid biosynthetic process;0.00861077574563912!GO:0031124;mRNA 3'-end processing;0.00861077574563912!GO:0005875;microtubule associated complex;0.00861258551126305!GO:0005905;coated pit;0.00867140364581004!GO:0030384;phosphoinositide metabolic process;0.00885372819803133!GO:0019843;rRNA binding;0.00908475585004174!GO:0000819;sister chromatid segregation;0.00916502470728685!GO:0030131;clathrin adaptor complex;0.00921532178331595!GO:0006082;organic acid metabolic process;0.00946034738511939!GO:0000070;mitotic sister chromatid segregation;0.00947519519053255!GO:0008234;cysteine-type peptidase activity;0.00947519519053255!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.00949813503137908!GO:0006367;transcription initiation from RNA polymerase II promoter;0.00961655845962217!GO:0009303;rRNA transcription;0.00980385679374328!GO:0030518;steroid hormone receptor signaling pathway;0.00980385679374328!GO:0046914;transition metal ion binding;0.0100014330293696!GO:0030132;clathrin coat of coated pit;0.0100281786332238!GO:0006091;generation of precursor metabolites and energy;0.0100435606564995!GO:0000178;exosome (RNase complex);0.0104095714801536!GO:0030660;Golgi-associated vesicle membrane;0.0105827720324019!GO:0016893;endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters;0.0106056658105015!GO:0004674;protein serine/threonine kinase activity;0.0107530842986837!GO:0030134;ER to Golgi transport vesicle;0.011001158063616!GO:0065007;biological regulation;0.0113866933092096!GO:0006891;intra-Golgi vesicle-mediated transport;0.0114559215084649!GO:0008139;nuclear localization sequence binding;0.0114867423133074!GO:0051789;response to protein stimulus;0.0115218290833902!GO:0006986;response to unfolded protein;0.0115218290833902!GO:0030133;transport vesicle;0.0116671950948564!GO:0006376;mRNA splice site selection;0.011847575699088!GO:0000389;nuclear mRNA 3'-splice site recognition;0.011847575699088!GO:0015992;proton transport;0.0119905940262169!GO:0030036;actin cytoskeleton organization and biogenesis;0.0120783119431783!GO:0016584;nucleosome positioning;0.012156548955097!GO:0001726;ruffle;0.0123135797587831!GO:0006220;pyrimidine nucleotide metabolic process;0.012319040509469!GO:0045947;negative regulation of translational initiation;0.012352193782571!GO:0006818;hydrogen transport;0.0124274057828807!GO:0000118;histone deacetylase complex;0.0129977792762544!GO:0008097;5S rRNA binding;0.0130436965451618!GO:0006506;GPI anchor biosynthetic process;0.0133538132679579!GO:0044262;cellular carbohydrate metabolic process;0.0134088581845167!GO:0016790;thiolester hydrolase activity;0.0138398361195979!GO:0009161;ribonucleoside monophosphate metabolic process;0.013890452985156!GO:0009156;ribonucleoside monophosphate biosynthetic process;0.013890452985156!GO:0005663;DNA replication factor C complex;0.0140756080139528!GO:0006301;postreplication repair;0.0143006240478475!GO:0016491;oxidoreductase activity;0.0143206845661164!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.0145398893538084!GO:0015002;heme-copper terminal oxidase activity;0.0145398893538084!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.0145398893538084!GO:0004129;cytochrome-c oxidase activity;0.0145398893538084!GO:0005732;small nucleolar ribonucleoprotein complex;0.0145849514145904!GO:0044450;microtubule organizing center part;0.0146383180406006!GO:0031577;spindle checkpoint;0.0146584946962676!GO:0044454;nuclear chromosome part;0.0148988551535712!GO:0043022;ribosome binding;0.0153858866663945!GO:0043488;regulation of mRNA stability;0.0156067802451919!GO:0043487;regulation of RNA stability;0.0156067802451919!GO:0042770;DNA damage response, signal transduction;0.0157575653851506!GO:0008610;lipid biosynthetic process;0.0161378509756901!GO:0006790;sulfur metabolic process;0.0162260898370124!GO:0005862;muscle thin filament tropomyosin;0.0165295856303656!GO:0008320;protein transmembrane transporter activity;0.0170785535478075!GO:0006892;post-Golgi vesicle-mediated transport;0.0173251467446057!GO:0006505;GPI anchor metabolic process;0.0173720732952049!GO:0016884;carbon-nitrogen ligase activity, with glutamine as amido-N-donor;0.0176379754394323!GO:0006406;mRNA export from nucleus;0.0176593584523171!GO:0032984;macromolecular complex disassembly;0.0179103165210199!GO:0006417;regulation of translation;0.0181777385676296!GO:0030659;cytoplasmic vesicle membrane;0.0181777385676296!GO:0031123;RNA 3'-end processing;0.0184367885646753!GO:0022884;macromolecule transmembrane transporter activity;0.0184367885646753!GO:0015450;P-P-bond-hydrolysis-driven protein transmembrane transporter activity;0.0184367885646753!GO:0005850;eukaryotic translation initiation factor 2 complex;0.0185530539720376!GO:0006740;NADPH regeneration;0.0190816317798841!GO:0006098;pentose-phosphate shunt;0.0190816317798841!GO:0006400;tRNA modification;0.0200352284335115!GO:0050681;androgen receptor binding;0.0205683600636815!GO:0009081;branched chain family amino acid metabolic process;0.0206215175876572!GO:0042719;mitochondrial intermembrane space protein transporter complex;0.0206215175876572!GO:0045039;protein import into mitochondrial inner membrane;0.0206215175876572!GO:0009066;aspartate family amino acid metabolic process;0.0206235301159681!GO:0000790;nuclear chromatin;0.0206981046806723!GO:0031901;early endosome membrane;0.0211981425772704!GO:0004532;exoribonuclease activity;0.0213272560364283!GO:0016896;exoribonuclease activity, producing 5'-phosphomonoesters;0.0213272560364283!GO:0035267;NuA4 histone acetyltransferase complex;0.0215203105507292!GO:0019205;nucleobase, nucleoside, nucleotide kinase activity;0.0216989287686894!GO:0016407;acetyltransferase activity;0.021919946737374!GO:0008156;negative regulation of DNA replication;0.0219635181887698!GO:0000209;protein polyubiquitination;0.0219864696812612!GO:0050662;coenzyme binding;0.0223369131594642!GO:0008017;microtubule binding;0.0226126132717963!GO:0030137;COPI-coated vesicle;0.0227302497599337!GO:0043241;protein complex disassembly;0.0232953372839035!GO:0000910;cytokinesis;0.0234203169427647!GO:0008276;protein methyltransferase activity;0.0234911472911732!GO:0030176;integral to endoplasmic reticulum membrane;0.023702101117872!GO:0009064;glutamine family amino acid metabolic process;0.0238102470525879!GO:0004448;isocitrate dehydrogenase activity;0.0239235388288419!GO:0009113;purine base biosynthetic process;0.0242665809885203!GO:0006607;NLS-bearing substrate import into nucleus;0.0247747295133686!GO:0007094;mitotic cell cycle spindle assembly checkpoint;0.0259291913750508!GO:0030127;COPII vesicle coat;0.0259291913750508!GO:0012507;ER to Golgi transport vesicle membrane;0.0259291913750508!GO:0016044;membrane organization and biogenesis;0.0265216907507617!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.0265619248130609!GO:0015399;primary active transmembrane transporter activity;0.0265619248130609!GO:0000726;non-recombinational repair;0.0270692909093297!GO:0008287;protein serine/threonine phosphatase complex;0.0277255926408382!GO:0022890;inorganic cation transmembrane transporter activity;0.0277895837047403!GO:0009127;purine nucleoside monophosphate biosynthetic process;0.0284865508058184!GO:0009167;purine ribonucleoside monophosphate metabolic process;0.0284865508058184!GO:0009126;purine nucleoside monophosphate metabolic process;0.0284865508058184!GO:0009168;purine ribonucleoside monophosphate biosynthetic process;0.0284865508058184!GO:0032594;protein transport within lipid bilayer;0.0284865508058184!GO:0032907;transforming growth factor-beta3 production;0.0284865508058184!GO:0032596;protein transport into lipid raft;0.0284865508058184!GO:0032910;regulation of transforming growth factor-beta3 production;0.0284865508058184!GO:0032595;B cell receptor transport within lipid bilayer;0.0284865508058184!GO:0033606;chemokine receptor transport within lipid bilayer;0.0284865508058184!GO:0032600;chemokine receptor transport out of lipid raft;0.0284865508058184!GO:0032599;protein transport out of lipid raft;0.0284865508058184!GO:0032597;B cell receptor transport into lipid raft;0.0284865508058184!GO:0032913;negative regulation of transforming growth factor-beta3 production;0.0284865508058184!GO:0044433;cytoplasmic vesicle part;0.0285077619575219!GO:0000077;DNA damage checkpoint;0.028620943632938!GO:0003857;3-hydroxyacyl-CoA dehydrogenase activity;0.028620943632938!GO:0005851;eukaryotic translation initiation factor 2B complex;0.0290368291706857!GO:0045892;negative regulation of transcription, DNA-dependent;0.0291106664415741!GO:0043284;biopolymer biosynthetic process;0.0293283072733407!GO:0030496;midbody;0.0293441958285245!GO:0030125;clathrin vesicle coat;0.0294695036180689!GO:0030665;clathrin coated vesicle membrane;0.0294695036180689!GO:0031369;translation initiation factor binding;0.0298072045814807!GO:0016585;chromatin remodeling complex;0.0302343722766172!GO:0003702;RNA polymerase II transcription factor activity;0.0304809482381891!GO:0005773;vacuole;0.0305040928396753!GO:0003756;protein disulfide isomerase activity;0.0310382791899322!GO:0016864;intramolecular oxidoreductase activity, transposing S-S bonds;0.0310382791899322!GO:0005652;nuclear lamina;0.0310670778957708!GO:0031902;late endosome membrane;0.0318244997955758!GO:0005784;translocon complex;0.03188522966157!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.0328815760001225!GO:0022411;cellular component disassembly;0.0329701286878814!GO:0005844;polysome;0.0331999533029733!GO:0007004;telomere maintenance via telomerase;0.0331999533029733!GO:0012506;vesicle membrane;0.0331999533029733!GO:0045815;positive regulation of gene expression, epigenetic;0.033325057392994!GO:0030145;manganese ion binding;0.0336377577218629!GO:0043631;RNA polyadenylation;0.0336645526887335!GO:0032981;mitochondrial respiratory chain complex I assembly;0.0345014063960937!GO:0010257;NADH dehydrogenase complex assembly;0.0345014063960937!GO:0033108;mitochondrial respiratory chain complex assembly;0.0345014063960937!GO:0051287;NAD binding;0.0345336204458606!GO:0006289;nucleotide-excision repair;0.0345346582515587!GO:0050811;GABA receptor binding;0.0347207018534611!GO:0008629;induction of apoptosis by intracellular signals;0.0347510986622206!GO:0031371;ubiquitin conjugating enzyme complex;0.0347673017713612!GO:0046966;thyroid hormone receptor binding;0.034792965743789!GO:0008536;Ran GTPase binding;0.0348646780014944!GO:0005680;anaphase-promoting complex;0.0348646780014944!GO:0006596;polyamine biosynthetic process;0.0348994332621404!GO:0004523;ribonuclease H activity;0.0353537172234551!GO:0004659;prenyltransferase activity;0.035387524707804!GO:0046365;monosaccharide catabolic process;0.0359830853707568!GO:0000781;chromosome, telomeric region;0.0374107781800338!GO:0016796;exonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters;0.038187371932223!GO:0005938;cell cortex;0.0385226948074273!GO:0043433;negative regulation of transcription factor activity;0.0389361260866161!GO:0046112;nucleobase biosynthetic process;0.0392849744096258!GO:0009308;amine metabolic process;0.0397278419400628!GO:0042026;protein refolding;0.0397475868618397!GO:0008143;poly(A) binding;0.0397768337645996!GO:0004526;ribonuclease P activity;0.0397768337645996!GO:0042769;DNA damage response, detection of DNA damage;0.0397768337645996!GO:0043189;H4/H2A histone acetyltransferase complex;0.0398029865016675!GO:0030029;actin filament-based process;0.0399673627550036!GO:0030175;filopodium;0.0404562674951709!GO:0001522;pseudouridine synthesis;0.0406083450687863!GO:0006096;glycolysis;0.0406943171787038!GO:0033170;DNA-protein loading ATPase activity;0.0413175903241754!GO:0003689;DNA clamp loader activity;0.0413175903241754!GO:0008408;3'-5' exonuclease activity;0.0415870356709377!GO:0005666;DNA-directed RNA polymerase III complex;0.0415870356709377!GO:0043130;ubiquitin binding;0.0424629589065786!GO:0032182;small conjugating protein binding;0.0424629589065786!GO:0016018;cyclosporin A binding;0.0431814316944279!GO:0005869;dynactin complex;0.0446882306658558!GO:0003747;translation release factor activity;0.0455762380509549!GO:0008079;translation termination factor activity;0.0455762380509549!GO:0009067;aspartate family amino acid biosynthetic process;0.0456741037263001!GO:0043161;proteasomal ubiquitin-dependent protein catabolic process;0.0464805174783456!GO:0006356;regulation of transcription from RNA polymerase I promoter;0.0467275611148171!GO:0051320;S phase;0.0473271175951386!GO:0005996;monosaccharide metabolic process;0.0475293095968032!GO:0042791;5S class rRNA transcription;0.0478197906399677!GO:0000127;transcription factor TFIIIC complex;0.0478197906399677!GO:0042797;tRNA transcription from RNA polymerase III promoter;0.0478197906399677!GO:0030522;intracellular receptor-mediated signaling pathway;0.0479312846051103!GO:0006415;translational termination;0.0480501785168832!GO:0042585;germinal vesicle;0.0480501785168832!GO:0030911;TPR domain binding;0.0483728548431128!GO:0006189;'de novo' IMP biosynthetic process;0.0483728548431128!GO:0006188;IMP biosynthetic process;0.0483728548431128!GO:0046040;IMP metabolic process;0.0483728548431128!GO:0006733;oxidoreduction coenzyme metabolic process;0.0491383014476653!GO:0000119;mediator complex;0.0494286148583059
 |sample_id=10790
 |sample_note=
@@ Line 76: / Line 98: @@
 |sample_tissue=mediastinum
 |top_motifs=OCT4_SOX2{dimer}:2.99333611082;VSX1,2:2.5238250858;TOPORS:2.14328103778;GFI1:2.09320094424;ALX1:1.92769800526;SOX{8,9,10}:1.71864972627;E2F1..5:1.61661077017;NFY{A,B,C}:1.59000261184;POU2F1..3:1.48809492397;ZNF384:1.42617909446;ELK1,4_GABP{A,B1}:1.42060068984;RBPJ:1.39020037375;FOXM1:1.29892191703;PITX1..3:1.2807527424;TFDP1:1.21992071727;CDX1,2,4:1.21921706565;PBX1:1.21050105087;EVI1:1.13572665755;NRF1:1.10510042661;RXR{A,B,G}_{NR1H2,PPAR}dimers:1.09690981743;PAX1,9:1.08017719377;SOX2:1.07110716173;ONECUT1,2:1.04469094877;FOXP1:1.01924982228;SOX17:1.01803294201;ZNF143:0.963631615018;STAT1,3:0.945775899973;IKZF2:0.923941921657;HOX{A4,D4}:0.884652815642;PAX8:0.878873321562;BREu{core}:0.856679509044;CUX2:0.832825892399;FOXQ1:0.823257058079;AIRE:0.807844594721;YY1:0.80504113555;CDC5L:0.729977320009;POU5F1:0.703395479282;LEF1_TCF7_TCF7L1,2:0.703075755045;FOXD3:0.693777626104;MYB:0.674236694521;KLF4:0.666966114182;PRRX1,2:0.644674433912;POU1F1:0.626163003704;T:0.586170423093;ZBTB16:0.562860517477;ZIC1..3:0.562709824954;PATZ1:0.561960620088;SP1:0.524080339509;FOX{I1,J2}:0.478776412999;GATA4:0.464859697312;ADNP_IRX_SIX_ZHX:0.437025988738;NANOG:0.436406481965;NKX2-3_NKX2-5:0.417421578191;POU6F1:0.35930328973;HIF1A:0.329628957191;NR5A1,2:0.301668654978;EN1,2:0.29623201897;FOXN1:0.284802687604;HSF1,2:0.268119422963;HOX{A5,B5}:0.266532893174;PAX2:0.261887434479;XCPE1{core}:0.25917126395;NKX6-1,2:0.248332653603;NKX2-1,4:0.219172215427;HOX{A6,A7,B6,B7}:0.209473724585;ARID5B:0.206657683929;ATF4:0.189531827273;STAT5{A,B}:0.172429946915;RORA:0.163488542441;TEF:0.157956043049;SNAI1..3:0.150212662192;CRX:0.133503769188;UFEwm:0.0929932543545;POU3F1..4:0.0624365352224;MZF1:0.0498737980522;GATA6:0.049315655038;FOXA2:0.0251078381063;ZFP161:0.0232571215077;IKZF1:0.0133127089162;HNF4A_NR2F1,2:0.00441302873405;HOXA9_MEIS1:-0.0606688622885;MYOD1:-0.0698506963512;MTF1:-0.0793751768355;ZEB1:-0.0958872820828;NFE2L2:-0.0967823274924;HAND1,2:-0.098293840317;NR1H4:-0.144386543366;HNF1A:-0.147108247606;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.150827350735;NANOG{mouse}:-0.163302403921;ATF5_CREB3:-0.164731858637;LMO2:-0.16678784242;PAX3,7:-0.18985618715;ELF1,2,4:-0.190863349414;MAZ:-0.21320042344;FOXO1,3,4:-0.216396375074;PAX4:-0.218249819004;LHX3,4:-0.219992999308;MYFfamily:-0.256440596674;ZNF148:-0.266870640748;RFX1:-0.289705420646;bHLH_family:-0.296306725581;HIC1:-0.337023449425;SOX5:-0.3426565565;SREBF1,2:-0.349831739588;NKX3-1:-0.353263240835;ZBTB6:-0.354716015065;RXR{A,B,G}:-0.370624663212;ESRRA:-0.375981241378;DMAP1_NCOR{1,2}_SMARC:-0.384244757591;REST:-0.385151219321;PRDM1:-0.390414816217;MYBL2:-0.391858771783;GTF2I:-0.409929273275;AHR_ARNT_ARNT2:-0.436363556257;NFIX:-0.438165877364;FOXP3:-0.440863870943;CREB1:-0.441898368989;NHLH1,2:-0.45542886155;XBP1:-0.457228121031;TEAD1:-0.460238645199;JUN:-0.463174348851;TBX4,5:-0.465622560518;NFKB1_REL_RELA:-0.469455768735;RREB1:-0.484784250483;TFAP2B:-0.489362517136;TBP:-0.489895483767;AR:-0.491831461087;TGIF1:-0.492764818449;BPTF:-0.516251226721;MEF2{A,B,C,D}:-0.519500356528;GFI1B:-0.519674183527;GZF1:-0.532364127976;MTE{core}:-0.547485674926;EBF1:-0.547891259143;FOS_FOS{B,L1}_JUN{B,D}:-0.552906909267;PAX6:-0.567228506168;FOSL2:-0.571906983385;NKX2-2,8:-0.60853180253;ZNF423:-0.60861009349;PDX1:-0.612399053511;SPI1:-0.618517106896;RUNX1..3:-0.634434709856;BACH2:-0.645959929676;GCM1,2:-0.655268631797;TP53:-0.662177543394;DBP:-0.669492801051;RFX2..5_RFXANK_RFXAP:-0.676682357988;SPIB:-0.695323124254;NFE2:-0.696893222212;PAX5:-0.700216240811;ATF2:-0.713080812055;ZNF238:-0.731135003967;HMGA1,2:-0.73217371634;MED-1{core}:-0.733092972465;FOX{F1,F2,J1}:-0.748148931084;HLF:-0.757673033299;EGR1..3:-0.793098145078;FOXL1:-0.808838641139;CEBPA,B_DDIT3:-0.819184954838;ALX4:-0.834203004529;NFIL3:-0.843534319772;NKX3-2:-0.845990509175;SPZ1:-0.847195031529;NR3C1:-0.862046765836;TFAP4:-0.865539704624;IRF7:-0.925205992642;NFE2L1:-0.927775424188;TAL1_TCF{3,4,12}:-0.963302965813;TLX2:-0.969129003287;ETS1,2:-0.995192437437;HES1:-1.01937693148;EP300:-1.02555883349;HBP1_HMGB_SSRP1_UBTF:-1.08129462805;PPARG:-1.08767630749;TFCP2:-1.09398916036;FOX{D1,D2}:-1.18822774457;SRF:-1.18826626152;NR6A1:-1.19580766356;STAT2,4,6:-1.2075222586;GLI1..3:-1.20916036776;TFAP2{A,C}:-1.2210985539;IRF1,2:-1.23552401916;NFATC1..3:-1.25384600626;GTF2A1,2:-1.26297801085;TLX1..3_NFIC{dimer}:-1.28609062903;SMAD1..7,9:-1.36672200946;HMX1:-1.38948348146;MAFB:-1.52994490566;RXRA_VDR{dimer}:-1.90918803294;ESR1:-1.97842681198;ATF6:-1.98107848024
+|xref=
+|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10790-110H7;search_select_hide=table117:FF:10790-110H7
 }}

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FF:10790-110H7: Difference between revisions

From FANTOM5_SSTAR

Latest revision as of 15:04, 3 June 2020

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	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0