FF:10694-109G1: Difference between revisions

Latest revision as of 14:33, 3 June 2020

Name:	tridermal teratoma cell line:HGRT
Species:	Human (Homo sapiens)
Library ID:	CNhs11828
Sample type:	cell lines
Genomic View:	UCSC
RefEX:	Specific genes
CAGEd-oPOSSUM:	link
ZENBU report :	link

Additional information

Sample information

strain	NA
tissue	ANATOMICAL SYSTEM
dev stage	NA
sex	female
age	3 months
cell type	unclassifiable
cell line	HGRT
company	RIKEN Bioresource centre
collaboration	Yukio Nakamura (RIKEN BRC)
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	NA
catalog number	NA
sample type	total RNA
extraction protocol (Details)	OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers

Method		Sample accession id
CAGE		SAMD00005881

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs11828		CAGE		DRX008030		DRR008902

Accession ID Hg19

Library id		BAM		CTSS
CNhs11828		DRZ000327		DRZ001712

Accession ID Hg38

Library id		BAM		CTSS
CNhs11828		DRZ011677		DRZ013062

Download raw sequence, BAM & CTSS

Hg19

Fasta	BAM	CTSS
download	download	donwload

Hg38

BAM	CTSS
download	donwload

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

Coexpression cluster	score
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral	0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate	0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural	0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial	0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel	0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS	0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils	0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural	0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis	-0.118
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy	0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood	0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate	0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma	0.161
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial	0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic	0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat	0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal	0
C113-thyroid-throat-lung-lymph-small-colon-trachea	0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma	0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus	0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea	0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal	0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula	0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD19	0
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils	0
C120-immature-salivary-tongue-skin-cervical-CD14-CD34	0
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B	0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal	0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils	0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte	0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus	0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain	0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil	0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP	0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small	0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD4	0
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar	0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin	0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived	0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma	0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis	0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum	0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal	0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic	0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal	0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal	0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen	0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen	0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B	0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair	0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast	0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis	0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal	0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell	0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral	0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal	0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum	0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue	0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small	0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast	0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung	0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular	0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate	0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid	0
C156-plasma-splenic-hereditary-B-large-xeroderma-b	0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea	0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen	0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal	0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain	0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral	0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta	0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon	0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal	0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma	0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial	0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung	0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD4	0
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral	0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma	0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage	0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet	0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye	0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes	0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose	0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils	0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural	0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19	0.0481
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous	0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus	0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil	0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood	0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle	-0.0397
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar	0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute	0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt	0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid	0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis	0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid	0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage	0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat	0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen	0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma	0
C190-colon-small-rectum-duodenum-appendix-temporal-oral	0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic	0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD4	0
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD14	0
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar	0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal	0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial	0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival	0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes	0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma	0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast	0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat	0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed	0.199
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall	0
C202-salivary-skin-penis-tongue-uterus-cervical-immature	0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic	0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD34	0
C205-mycosis-cord-hairy-xeroderma-CD4-B-b	0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary	0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte	0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous	0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen	0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic	0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil	0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney	0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD34	0
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral	0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain	0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature	0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD34	0
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital	0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary	0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum	0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD19	0
C220-Adipocyte-mature-left-breast-skin-liver-adipose	0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular	0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte	0.412
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte	0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal	0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal	0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal	0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue	0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult	0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart	0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD14	0
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung	0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis	0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum	0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF7	0
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma	0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas	0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma	0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial	0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell	0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy	0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral	0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal	0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus	0.0896
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach	0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing	0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage	0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic	0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory	-0.00569
C247-pons-locus-medulla-spinal-paracentral-medial-occipital	0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast	0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial	0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall	0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD4	0
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue	0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma	0.467
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum	0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris	0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast	0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla	0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral	0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric	0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing	0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole	0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood	0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal	0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms	0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil	0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute	0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8	-0.0613
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast	0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear	0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate	0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD4	0
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung	0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth	-0.0608
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum	0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil	0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast	0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte	0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal	0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal	0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma	0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory	0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial	0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic	0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD4	0
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small	0.203
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat	0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular	0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus	0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic	0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial	0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal	0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal	0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left	0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart	0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature	0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea	0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal	0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD34	0
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral	0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte	0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed	0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral	0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital	0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood	0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala	0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal	0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils	0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic	0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid	0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole	0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus	0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea	0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory	0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen	0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile	0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula	0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt	0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea	0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms	0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD133	0
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus	0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small	0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal	0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon	0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder	0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature	0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS	0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel	0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix	0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus	0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma	0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas	0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma	0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas	0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma	0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary	0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature	0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma	0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue	0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural	0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H9	0
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic	0.227
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature	0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical	0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b	0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph	0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute	0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic	0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils	0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus	0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung	0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma	0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK	0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast	0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue	0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate	0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left	0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal	0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy	0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral	0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell	0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD8	0
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea	0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal	0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD34	0
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast	0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid	0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD34	0
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic	0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon	0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma	0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma	0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic	0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived	0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic	0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left	0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen	0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair	0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole	0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular	0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma	0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid	0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix	0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain	0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole	0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs11828

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	0.586
MA0003.1	MA0003.1	0.332
MA0004.1	MA0004.1	0.333
MA0006.1	MA0006.1	0.416
MA0007.1	MA0007.1	0.185
MA0009.1	MA0009.1	0.502
MA0014.1	MA0014.1	0.0249
MA0017.1	MA0017.1	0.239
MA0018.2	MA0018.2	0.00778
MA0019.1	MA0019.1	0.308
MA0024.1	MA0024.1	0.727
MA0025.1	MA0025.1	0.192
MA0027.1	MA0027.1	0.561
MA0028.1	MA0028.1	8.16265e-11
MA0029.1	MA0029.1	0.334
MA0030.1	MA0030.1	0.277
MA0031.1	MA0031.1	0.545
MA0035.2	MA0035.2	0.511
MA0038.1	MA0038.1	0.58
MA0039.2	MA0039.2	0.00223
MA0040.1	MA0040.1	0.714
MA0041.1	MA0041.1	0.152
MA0042.1	MA0042.1	0.0597
MA0043.1	MA0043.1	0.00425
MA0046.1	MA0046.1	0.0109
MA0047.2	MA0047.2	0.33
MA0048.1	MA0048.1	0.55
MA0050.1	MA0050.1	5.30264e-5
MA0051.1	MA0051.1	0.00352
MA0052.1	MA0052.1	0.817
MA0055.1	MA0055.1	0.313
MA0057.1	MA0057.1	0.327
MA0058.1	MA0058.1	0.0515
MA0059.1	MA0059.1	0.0697
MA0060.1	MA0060.1	0.052
MA0061.1	MA0061.1	0.466
MA0062.2	MA0062.2	2.33291e-18
MA0065.2	MA0065.2	0.0627
MA0066.1	MA0066.1	0.857
MA0067.1	MA0067.1	0.091
MA0068.1	MA0068.1	6.41662e-4
MA0069.1	MA0069.1	0.378
MA0070.1	MA0070.1	0.633
MA0071.1	MA0071.1	0.838
MA0072.1	MA0072.1	0.359
MA0073.1	MA0073.1	0.419
MA0074.1	MA0074.1	0.596
MA0076.1	MA0076.1	2.02932e-11
MA0077.1	MA0077.1	0.725
MA0078.1	MA0078.1	0.0309
MA0079.2	MA0079.2	0.418
MA0080.2	MA0080.2	3.41199e-7
MA0081.1	MA0081.1	0.00191
MA0083.1	MA0083.1	0.00107
MA0084.1	MA0084.1	0.018
MA0087.1	MA0087.1	0.426
MA0088.1	MA0088.1	0.0506
MA0090.1	MA0090.1	6.34769e-5
MA0091.1	MA0091.1	0.169
MA0092.1	MA0092.1	0.236
MA0093.1	MA0093.1	0.277
MA0099.2	MA0099.2	0.202
MA0100.1	MA0100.1	0.788
MA0101.1	MA0101.1	0.385
MA0102.2	MA0102.2	0.713
MA0103.1	MA0103.1	0.00847
MA0104.2	MA0104.2	0.0055
MA0105.1	MA0105.1	0.261
MA0106.1	MA0106.1	0.937
MA0107.1	MA0107.1	0.634
MA0108.2	MA0108.2	0.00603
MA0111.1	MA0111.1	0.508
MA0112.2	MA0112.2	0.139
MA0113.1	MA0113.1	0.706
MA0114.1	MA0114.1	0.052
MA0115.1	MA0115.1	0.147
MA0116.1	MA0116.1	0.0642
MA0117.1	MA0117.1	0.437
MA0119.1	MA0119.1	0.0314
MA0122.1	MA0122.1	0.944
MA0124.1	MA0124.1	0.651
MA0125.1	MA0125.1	0.881
MA0131.1	MA0131.1	0.0608
MA0135.1	MA0135.1	0.328
MA0136.1	MA0136.1	2.44345e-9
MA0137.2	MA0137.2	0.298
MA0138.2	MA0138.2	0.969
MA0139.1	MA0139.1	0.00463
MA0140.1	MA0140.1	0.798
MA0141.1	MA0141.1	0.503
MA0142.1	MA0142.1	0.0747
MA0143.1	MA0143.1	0.231
MA0144.1	MA0144.1	0.854
MA0145.1	MA0145.1	0.731
MA0146.1	MA0146.1	0.61
MA0147.1	MA0147.1	0.0142
MA0148.1	MA0148.1	0.315
MA0149.1	MA0149.1	0.733
MA0150.1	MA0150.1	0.69
MA0152.1	MA0152.1	0.0107
MA0153.1	MA0153.1	0.575
MA0154.1	MA0154.1	0.132
MA0155.1	MA0155.1	0.806
MA0156.1	MA0156.1	5.48846e-9
MA0157.1	MA0157.1	0.595
MA0159.1	MA0159.1	0.222
MA0160.1	MA0160.1	0.634
MA0162.1	MA0162.1	0.807
MA0163.1	MA0163.1	0.0346
MA0164.1	MA0164.1	0.281
MA0258.1	MA0258.1	0.282
MA0259.1	MA0259.1	0.103

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs11828

Novel motif	Logo	P-value
1	1	0.756
10	10	0.0685
100	100	0.294
101	101	0.685
102	102	0.0298
103	103	0.939
104	104	0.499
105	105	0.104
106	106	0.277
107	107	0.009
108	108	0.5
109	109	0.14
11	11	0.864
110	110	0.696
111	111	0.665
112	112	0.0411
113	113	0.485
114	114	0.45
115	115	0.618
116	116	0.761
117	117	0.0182
118	118	0.19
119	119	0.238
12	12	0.0473
120	120	0.0576
121	121	0.00773
122	122	0.188
123	123	0.705
124	124	0.0367
125	125	0.456
126	126	0.93
127	127	0.191
128	128	0.0121
129	129	0.307
13	13	0.0133
130	130	0.381
131	131	0.299
132	132	0.523
133	133	0.474
134	134	0.401
135	135	0.543
136	136	0.0346
137	137	0.173
138	138	0.745
139	139	0.815
14	14	0.717
140	140	0.726
141	141	0.121
142	142	0.872
143	143	0.633
144	144	0.87
145	145	0.819
146	146	0.513
147	147	0.0993
148	148	0.14
149	149	0.906
15	15	0.8
150	150	0.596
151	151	0.951
152	152	0.912
153	153	0.629
154	154	0.744
155	155	0.726
156	156	0.453
157	157	0.173
158	158	0.809
159	159	0.884
16	16	0.7
160	160	0.696
161	161	0.317
162	162	0.0421
163	163	0.423
164	164	0.0904
165	165	0.582
166	166	0.129
167	167	0.685
168	168	0.841
169	169	0.757
17	17	0.0492
18	18	0.193
19	19	0.515
2	2	0.434
20	20	0.272
21	21	0.559
22	22	0.382
23	23	0.00504
24	24	0.927
25	25	0.0593
26	26	0.537
27	27	0.993
28	28	0.471
29	29	0.00124
3	3	0.738
30	30	0.169
31	31	0.619
32	32	7.08089e-4
33	33	0.103
34	34	0.31
35	35	0.452
36	36	0.193
37	37	0.198
38	38	0.612
39	39	0.764
4	4	0.563
40	40	0.0508
41	41	0.653
42	42	0.845
43	43	0.885
44	44	0.0845
45	45	0.337
46	46	0.668
47	47	0.141
48	48	0.175
49	49	0.398
5	5	0.51
50	50	0.39
51	51	0.278
52	52	0.0697
53	53	0.979
54	54	0.232
55	55	0.14
56	56	0.422
57	57	0.462
58	58	0.575
59	59	0.394
6	6	0.345
60	60	0.597
61	61	0.511
62	62	0.889
63	63	0.517
64	64	0.826
65	65	0.223
66	66	0.848
67	67	0.915
68	68	0.584
69	69	0.665
7	7	0.078
70	70	0.719
71	71	0.0582
72	72	0.596
73	73	0.0981
74	74	0.166
75	75	0.0101
76	76	0.222
77	77	0.662
78	78	0.137
79	79	0.848
8	8	0.768
80	80	0.846
81	81	0.615
82	82	0.517
83	83	0.961
84	84	0.97
85	85	0.79
86	86	0.59
87	87	0.0212
88	88	0.143
89	89	0.406
9	9	0.142
90	90	0.398
91	91	0.837
92	92	0.134
93	93	0.822
94	94	0.0381
95	95	0.00464
96	96	0.307
97	97	0.166
98	98	0.465
99	99	0.0188

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs11828

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
DOID:3307 teratoma
EFO:0002091 biological replicate
FF:0000003 cell line sample
FF:0000210 human sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

DOID: Disease
4 (disease)
162 (cancer)
14566 (disease of cellular proliferation)
0050687 (cell type cancer)
3095 (germ cell and embryonal cancer)
2994 (germ cell cancer)
3307 (teratoma)

FF: FANTOM5
0000102 (sample by type)
0000003 (cell line sample)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
NA

@@ Line 1: / Line 1: @@
 {{f5samples
+|DRA_sample_Accession=CAGE@SAMD00005881
+|accession_numbers=CAGE;DRX008030;DRR008902;DRZ000327;DRZ001712;DRZ011677;DRZ013062
 |ancestors_in_anatomy_facet=
 |ancestors_in_cell_lineage_facet=
-|ancestors_in_disease_facet=DOID:0050687,DOID:14566,DOID:162,DOID:2994,DOID:3095,DOID:3307,DOID:4
+|ancestors_in_disease_facet=DOID:4,DOID:162,DOID:14566,DOID:0050687,DOID:3095,DOID:2994,DOID:3307
+|ancestors_in_ff_facet=FF:0000102,FF:0000003,FF:0000210,FF:0000101,FF:0000001
 |comment=
 |created_by=
 |creation_date=
+|data_phase=2
+|datafreeze_phase=2
 |def=
 |expression_enrichment_score=chr16:86544113..86544145,+!p1@FOXF1!2.29!235.55!FOXF1;;chr10:28034739..28034756,-!p1@MKX!2.21!162.18!MKX;;chr2:176969228..176969260,+!p1@HOXD11!1.89!77.23!HOXD11;;chr12:52445218..52445237,+!p1@NR4A1!1.86!847.59!NR4A1;;chr4:174451370..174451387,-!p1@HAND2!1.85!69.51!HAND2;;chr9:132427883..132427951,+!p2@PRRX2!1.85!69.51!PRRX2;;chr8:106330656..106330684,+!p1@ZFPM2!1.72!131.29!ZFPM2;;chr1:170633348..170633399,+!p2@PRRX1!1.72!69.51!PRRX1;;chr2:176969179..176969226,+!p2@HOXD11!1.68!46.34!HOXD11;;chr9:132427972..132428056,+!p1@PRRX2!1.66!57.92!PRRX2;;chrX:2418949..2419024,-!p1@DHRSX,p1@ZBED1!1.66!44.41!ZBED1;;chr12:115122318..115122331,-!p2@TBX3!1.64!42.48!TBX3;;chr12:66218255..66218304,+!p3@HMGA2!1.61!102.33!HMGA2;;chr6:134210243..134210257,+!p1@TCF21!1.60!38.61!TCF21;;chr7:27224842..27224872,-!p1@HOXA11!1.60!38.61!HOXA11;;chr14:61116183..61116208,-!p1@SIX1!1.57!131.29!SIX1;;chr1:170632285..170632309,+!p1@PRRX1!1.57!40.55!PRRX1;;chr20:50179368..50179392,-!p2@NFATC2!1.53!42.48!NFATC2;;chr2:5832508..5832524,+!p1@SOX11!1.53!32.82!SOX11;;chr7:27224795..27224840,-!p2@HOXA11!1.53!32.82!HOXA11;;chr11:65686802..65686818,+!p6@DRAP1!1.50!52.13!DRAP1;;chr15:57511609..57511651,+!p2@TCF12!1.50!50.20!TCF12;;chr7:27192185..27192209,-!p1@HOXA3!1.50!30.89!HOXA3;;chr12:66218598..66218645,+!p2@HMGA2!1.49!133.22!HMGA2;;chr7:19157248..19157268,-!p1@TWIST1!1.47!77.23!TWIST1;;chr8:106330696..106330719,+!p2@ZFPM2!1.45!34.75!ZFPM2;;chr12:115122303..115122314,-!p6@TBX3!1.42!25.10!TBX3;;chr4:174450089..174450153,-!p2@HAND2!1.42!25.10!HAND2;;chr4:81118647..81118666,+!p1@PRDM8!1.41!32.82!PRDM8;;chr5:321810..321877,+!p1@AHRR!1.40!75.30!AHRR;;chr5:50679228..50679288,+!p1@ISL1!1.38!23.17!ISL1;;chr1:197886461..197886558,+!p1@LHX9!1.35!21.24!LHX9;;chr5:134369905..134369972,-!p1@PITX1!1.33!30.89!PITX1;;chr2:19558373..19558392,-!p1@OSR1!1.26!46.34!OSR1;;chr9:77112244..77112262,+!p1@RORB!1.26!19.31!RORB;;chr4:174451350..174451363,-!p3@HAND2!1.26!17.38!HAND2;;chr1:170633058..170633084,+!p5@PRRX1!1.26!17.38!PRRX1;;chr10:28034772..28034783,-!p4@MKX!1.26!17.38!MKX;;chr16:51185172..51185197,-!p1@SALL1!1.26!17.38!SALL1;;chr7:28448965..28448994,+!p2@CREB5!1.25!57.92!CREB5;;chr8:60031682..60031710,-!p2@TOX!1.25!27.03!TOX;;chr2:239756671..239756732,+!p1@TWIST2!1.24!52.13!TWIST2;;chr5:92919452..92919496,+!p11@NR2F1!1.22!15.45!NR2F1;;chr10:131762504..131762555,-!p1@EBF3!1.22!15.45!EBF3;;chr3:18466787..18466839,-!p1@SATB1!1.20!65.64!SATB1;;chr2:239756739..239756755,+!p2@TWIST2!1.20!25.10!TWIST2;;chr3:169381420..169381535,-!p1@MECOM!1.20!17.38!MECOM;;chr11:46299199..46299233,+!p1@CREB3L1!1.19!73.37!CREB3L1;;chr8:60031619..60031676,-!p1@TOX!1.19!30.89!TOX;;chr5:137804405..137804444,+!p3@EGR1!1.19!17.38!EGR1;;chr12:115122005..115122016,-!p3@TBX3!1.19!17.38!TBX3;;chr5:137801160..137801176,+!p1@EGR1!1.15!1297.45!EGR1;;chrX:66763815..66763854,+!p2@AR!1.15!17.38!AR;;chr6:45390025..45390076,+!p2@RUNX2!1.14!30.89!RUNX2;;chr20:42543506..42543549,+!p2@TOX2!1.14!30.89!TOX2;;chr6:10412600..10412637,-!p1@TFAP2A!1.14!21.24!TFAP2A;;chr10:63809106..63809127,+!p1@ARID5B!1.13!167.97!ARID5B;;chr6:10415276..10415341,-!p2@TFAP2A!1.13!15.45!TFAP2A;;chr15:37390850..37390909,-!p3@MEIS2!1.11!23.17!MEIS2;;chr8:67525443..67525459,-!p2@MYBL1!1.10!17.38!MYBL1;;chr7:27205136..27205164,-!p1@HOXA9!1.10!11.58!HOXA9;;chr1:170632723..170632739,+!p8@PRRX1!1.10!11.58!PRRX1;;chr1:164528616..164528660,+!p5@PBX1!1.09!23.17!PBX1;;chr12:115121962..115121987,-!p1@TBX3!1.08!92.67!TBX3;;chr12:66218183..66218209,+!p4@HMGA2!1.08!21.24!HMGA2;;chr2:157189180..157189290,-!p1@NR4A2!1.07!55.99!NR4A2;;chr20:42543441..42543497,+!p1@TOX2!1.07!48.27!TOX2;;chr8:22550982..22550999,-!p1@EGR3!1.07!30.89!EGR3;;chrX:66763856..66763896,+!p1@AR!1.07!15.45!AR;;chr8:49833978..49833996,-!p1@SNAI2!1.06!218.17!SNAI2;;chr5:137804484..137804498,+!p2@EGR1!1.06!42.48!EGR1;;chr15:37392616..37392638,-!p2@MEIS2!1.06!32.82!MEIS2;;chr17:59477233..59477263,+!p1@TBX2!1.06!32.82!TBX2;;chr6:1312325..1312340,+!p1@FOXQ1!1.06!17.38!FOXQ1;;chr15:96874012..96874042,+!p2@NR2F2!1.05!92.67!NR2F2;;chr11:46299539..46299620,+!p2@CREB3L1!1.05!17.38!CREB3L1;;chr12:66218573..66218596,+!p7@HMGA2!1.05!15.45!HMGA2;;chr8:73921136..73921151,+!p2@TERF1!1.05!15.45!TERF1;;chr14:75745523..75745537,+!p1@FOS!1.04!1208.63!FOS;;chr15:37392724..37392757,-!p1@MEIS2!1.04!46.34!MEIS2;;chr1:170633262..170633285,+!p3@PRRX1!1.04!11.58!PRRX1;;chr20:50721803..50721857,-!p2@ZFP64!1.03!15.45!ZFP64;;chr19:49864746..49864780,-!p2@TEAD2!1.03!13.52!TEAD2;;chr5:134369879..134369898,-!p2@PITX1!1.03!9.65!PITX1;;chr7:27205106..27205134,-!p2@HOXA9!1.03!9.65!HOXA9;;chrX:66764343..66764362,+!p4@AR!1.03!9.65!AR;;chr12:115121770..115121781,-!p4@TBX3!1.03!9.65!TBX3;;chr17:59529743..59529798,+!p1@TBX4!1.03!9.65!TBX4;;chr2:185463521..185463557,+!p3@ZNF804A!1.03!9.65!ZNF804A;;chr8:28243661..28243709,-!p1@ZNF395!1.01!54.06!ZNF395;;chr3:12329358..12329393,+!p3@PPARG!1.01!23.17!PPARG;;chr8:60031762..60031803,-!p3@TOX!1.01!13.52!TOX;;chr3:157823517..157823562,-!p1@SHOX2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@@ Line 35: / Line 40: @@
 |fonse_treatment_closure=
 |has_quality=
+|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/tridermal%2520teratoma%2520cell%2520line%253aHGRT.CNhs11828.10694-109G1.hg19.nobarcode.bam
+|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/tridermal%2520teratoma%2520cell%2520line%253aHGRT.CNhs11828.10694-109G1.hg19.ctss.bed.gz
+|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/tridermal%2520teratoma%2520cell%2520line%253aHGRT.CNhs11828.10694-109G1.hg19.nobarcode.rdna.fa.gz
+|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/tridermal%2520teratoma%2520cell%2520line%253aHGRT.CNhs11828.10694-109G1.hg38.nobarcode.bam
+|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/tridermal%2520teratoma%2520cell%2520line%253aHGRT.CNhs11828.10694-109G1.hg38.nobarcode.ctss.bed.gz
 |id=FF:10694-109G1
 |is_a=DOID:3307;;EFO:0002091;;FF:0000003;;FF:0000210
+|is_obsolete=
+|library_id=CNhs11828
+|library_id_phase_based=2:CNhs11828
+|microRNAs=
+|microRNAs_nn=
+|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10694
+|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10694
 |name=tridermal teratoma cell line:HGRT
 |namespace=FANTOM5
@@ Line 42: / Line 59: @@
 |profile_cagescan=,,,
 |profile_hcage=CNhs11828,LSID829,release010,COMPLETED
-|profile_rnaseq=,,,
+|profile_rnaseq=
 |profile_srnaseq=,,,
+|refex=http://refex.dbcls.jp/genelist.php?lang
+|repeat_enrich_byfamily=0,0,0,0,0,0,0,-0.160318030086386,0,0.101498042442357,-0.0489161873847689,0,0,0,0,0,0,0,0,0,0,0,0.466974746384346,0,-0.153323010348428,0,0,0,0,0,-0.0979578962680575,0,0,-0.132956589778862,0,0,0,0,0,0,0,0,0,0,0,0,0.560416108716796,0,0,0,0,0,0,0,0,-0.0242150211128343,0,0,0,0.466974746384346,0,0.0924337818616886,0,-0.0969923612426051,0,0,-0.097343627213097,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0411671676471608,0.190973782297368,0.233487373192173,0,0,0.209901187934288,0.204806821970338,0,0.832008449332413,0.233487373192173,0.832008449332413,-0.0980353512377064,-0.138477200800895,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.096373593922461,0,0,0,0.17016683295068,0.230879562101264,0,0,0,0,0,0
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 |rna_box=109
 |rna_catalog_number=
@@ Line 57: / Line 77: @@
 |rna_weight_ug=34.71326
 |sample_age=3 months
+|sample_category=cell lines
 |sample_cell_catalog=RCB0966
 |sample_cell_line=HGRT
@@ Line 69: / Line 90: @@
 |sample_ethnicity=J
 |sample_experimental_condition=
+|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;5.75011250733014e-218!GO:0005737;cytoplasm;1.47391801213576e-156!GO:0043226;organelle;2.03024472815211e-150!GO:0043229;intracellular organelle;4.62470881993386e-150!GO:0043231;intracellular membrane-bound organelle;8.39352773462213e-142!GO:0043227;membrane-bound organelle;1.44777040145933e-141!GO:0044422;organelle part;1.38103395899162e-114!GO:0044446;intracellular organelle part;2.32789120072117e-113!GO:0044444;cytoplasmic part;1.56736524715084e-97!GO:0005515;protein binding;1.15328674755901e-89!GO:0032991;macromolecular complex;7.47570741441916e-82!GO:0044237;cellular metabolic process;1.76598230627623e-67!GO:0044238;primary metabolic process;2.79913273243862e-67!GO:0043170;macromolecule metabolic process;7.37776647905621e-67!GO:0030529;ribonucleoprotein complex;1.04002901077489e-64!GO:0005634;nucleus;2.28156933991244e-62!GO:0044428;nuclear part;6.2545299232956e-58!GO:0003723;RNA binding;1.21481980237755e-57!GO:0043233;organelle lumen;9.07118245707678e-57!GO:0031974;membrane-enclosed lumen;9.07118245707678e-57!GO:0016043;cellular component organization and biogenesis;4.40399918761873e-53!GO:0019538;protein metabolic process;5.48478091544795e-46!GO:0043234;protein complex;6.50412269963713e-42!GO:0044260;cellular macromolecule metabolic process;8.18982273552497e-42!GO:0044267;cellular protein metabolic process;2.6942418527327e-41!GO:0005739;mitochondrion;3.08543527259222e-40!GO:0005840;ribosome;7.74338291535671e-37!GO:0006396;RNA processing;1.32220273330108e-36!GO:0006412;translation;8.27503424453688e-36!GO:0031981;nuclear lumen;1.05364087952525e-35!GO:0043283;biopolymer metabolic process;1.31034475810185e-35!GO:0043228;non-membrane-bound organelle;1.82979216518858e-35!GO:0043232;intracellular non-membrane-bound organelle;1.82979216518858e-35!GO:0006996;organelle organization and biogenesis;3.498170906173e-34!GO:0033036;macromolecule localization;3.58737815652618e-33!GO:0003735;structural constituent of ribosome;5.55841628621006e-33!GO:0016071;mRNA metabolic process;6.62506332799935e-33!GO:0015031;protein transport;4.16563856768693e-32!GO:0031090;organelle membrane;4.5560592719247e-32!GO:0008380;RNA splicing;1.03129825764236e-29!GO:0005829;cytosol;1.07351102280513e-29!GO:0008104;protein localization;1.54656106649417e-29!GO:0045184;establishment of protein localization;5.72024180494895e-29!GO:0010467;gene expression;5.92935986722745e-29!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;7.31775858381681e-29!GO:0033279;ribosomal subunit;8.28730999838304e-29!GO:0046907;intracellular transport;8.5025633179122e-29!GO:0006397;mRNA processing;4.38862836008621e-28!GO:0044429;mitochondrial part;6.55686993129819e-27!GO:0006259;DNA metabolic process;1.09177488185964e-26!GO:0065003;macromolecular complex assembly;1.32774051206028e-26!GO:0009059;macromolecule biosynthetic process;9.6332306339018e-26!GO:0031967;organelle envelope;1.65625077674104e-25!GO:0031975;envelope;3.05610973117396e-25!GO:0007049;cell cycle;8.13633842132178e-25!GO:0022607;cellular component assembly;1.24203138859673e-24!GO:0044249;cellular biosynthetic process;1.50534308891982e-24!GO:0009058;biosynthetic process;9.48965355038164e-24!GO:0005654;nucleoplasm;2.04536147963527e-23!GO:0005830;cytosolic ribosome (sensu Eukaryota);1.8225315416588e-22!GO:0000166;nucleotide binding;3.02362650477048e-22!GO:0006886;intracellular protein transport;4.23688174919376e-22!GO:0005681;spliceosome;3.70359834836105e-21!GO:0008134;transcription factor binding;1.61831348039585e-20!GO:0022613;ribonucleoprotein complex biogenesis and assembly;5.18047833793515e-20!GO:0044451;nucleoplasm part;7.13500288270631e-20!GO:0044445;cytosolic part;6.74472297478748e-19!GO:0051649;establishment of cellular localization;2.51824181161581e-18!GO:0051641;cellular localization;3.87337364890601e-18!GO:0022402;cell cycle process;5.7801605726335e-18!GO:0016462;pyrophosphatase activity;1.12188448886233e-17!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;1.39324543598278e-17!GO:0017111;nucleoside-triphosphatase activity;1.41099206488921e-17!GO:0016817;hydrolase activity, acting on acid anhydrides;2.1551714718623e-17!GO:0006457;protein folding;2.26997587005097e-17!GO:0000278;mitotic cell cycle;3.61159766370144e-17!GO:0005740;mitochondrial envelope;6.24146757750134e-17!GO:0015934;large ribosomal subunit;3.18013354065496e-16!GO:0006119;oxidative phosphorylation;3.57098888454773e-16!GO:0019866;organelle inner membrane;4.24446381442077e-16!GO:0031966;mitochondrial membrane;4.53835511362937e-16!GO:0032553;ribonucleotide binding;8.55319651513835e-16!GO:0032555;purine ribonucleotide binding;8.55319651513835e-16!GO:0044455;mitochondrial membrane part;1.43972272168788e-15!GO:0017076;purine nucleotide binding;1.89374349731164e-15!GO:0022618;protein-RNA complex assembly;3.45964460857004e-15!GO:0051276;chromosome organization and biogenesis;4.87361305782718e-15!GO:0005743;mitochondrial inner membrane;5.86397990869686e-15!GO:0005794;Golgi apparatus;7.41527898313375e-15!GO:0012505;endomembrane system;7.87264906265931e-15!GO:0048770;pigment granule;8.25390195958706e-15!GO:0042470;melanosome;8.25390195958706e-15!GO:0005524;ATP binding;1.52966083573538e-14!GO:0048523;negative regulation of cellular process;1.5848760820672e-14!GO:0032559;adenyl ribonucleotide binding;2.95580339199228e-14!GO:0006325;establishment and/or maintenance of chromatin architecture;3.28485639910439e-14!GO:0003676;nucleic acid binding;3.68115858306571e-14!GO:0005694;chromosome;5.70940066873719e-14!GO:0003712;transcription cofactor activity;9.35900860778678e-14!GO:0030554;adenyl nucleotide binding;1.02634987223694e-13!GO:0005783;endoplasmic reticulum;1.36962733780812e-13!GO:0015935;small ribosomal subunit;1.45741700481939e-13!GO:0006323;DNA packaging;1.87084479389861e-13!GO:0043285;biopolymer catabolic process;3.92360328585018e-13!GO:0006605;protein targeting;5.91857453902931e-13!GO:0051082;unfolded protein binding;6.0542582313907e-13!GO:0005746;mitochondrial respiratory chain;6.62528577988894e-13!GO:0043412;biopolymer modification;6.6366465066329e-13!GO:0051603;proteolysis involved in cellular protein catabolic process;8.9184866694502e-13!GO:0005730;nucleolus;1.07002580253458e-12!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;1.09730510238967e-12!GO:0006512;ubiquitin cycle;1.18879574721625e-12!GO:0031980;mitochondrial lumen;1.18879574721625e-12!GO:0005759;mitochondrial matrix;1.18879574721625e-12!GO:0016070;RNA metabolic process;1.51733865452723e-12!GO:0016192;vesicle-mediated transport;1.57777873610178e-12!GO:0019941;modification-dependent protein catabolic process;1.75190313542736e-12!GO:0043632;modification-dependent macromolecule catabolic process;1.75190313542736e-12!GO:0044257;cellular protein catabolic process;1.90113157261801e-12!GO:0044265;cellular macromolecule catabolic process;1.9659594543612e-12!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);2.04155749201676e-12!GO:0048519;negative regulation of biological process;2.12119790823383e-12!GO:0048193;Golgi vesicle transport;2.15875186280569e-12!GO:0006511;ubiquitin-dependent protein catabolic process;2.15875186280569e-12!GO:0050136;NADH dehydrogenase (quinone) activity;2.33890187896597e-12!GO:0003954;NADH dehydrogenase activity;2.33890187896597e-12!GO:0008137;NADH dehydrogenase (ubiquinone) activity;2.33890187896597e-12!GO:0000398;nuclear mRNA splicing, via spliceosome;2.73601219168013e-12!GO:0000375;RNA splicing, via transesterification reactions;2.73601219168013e-12!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;2.73601219168013e-12!GO:0000087;M phase of mitotic cell cycle;3.18090377917063e-12!GO:0007067;mitosis;4.66344310714384e-12!GO:0016874;ligase activity;5.94630543938107e-12!GO:0006913;nucleocytoplasmic transport;7.34573545264055e-12!GO:0012501;programmed cell death;8.32900960383692e-12!GO:0015630;microtubule cytoskeleton;1.10235203531179e-11!GO:0030163;protein catabolic process;1.12999518176028e-11!GO:0044427;chromosomal part;1.15730649788767e-11!GO:0006464;protein modification process;1.16632172832654e-11!GO:0016604;nuclear body;1.31862633349113e-11!GO:0009057;macromolecule catabolic process;1.69228509697328e-11!GO:0051169;nuclear transport;1.74223955776464e-11!GO:0006366;transcription from RNA polymerase II promoter;2.29463399065961e-11!GO:0008219;cell death;2.34636429752639e-11!GO:0016265;death;2.34636429752639e-11!GO:0008135;translation factor activity, nucleic acid binding;2.4145828323385e-11!GO:0051301;cell division;2.58912813821769e-11!GO:0022403;cell cycle phase;2.68605862887845e-11!GO:0005793;ER-Golgi intermediate compartment;2.99450621174021e-11!GO:0006915;apoptosis;3.18452851935005e-11!GO:0051726;regulation of cell cycle;3.39745619463441e-11!GO:0043687;post-translational protein modification;3.61389786110465e-11!GO:0000074;regulation of progression through cell cycle;3.64280966604668e-11!GO:0042623;ATPase activity, coupled;3.86542458000129e-11!GO:0006974;response to DNA damage stimulus;3.94243911037947e-11!GO:0044432;endoplasmic reticulum part;5.0817975000535e-11!GO:0016887;ATPase activity;5.56126873220387e-11!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;7.53639269444538e-11!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);1.53037907753055e-10!GO:0000502;proteasome complex (sensu Eukaryota);2.52221376992893e-10!GO:0050794;regulation of cellular process;3.12451740294161e-10!GO:0030964;NADH dehydrogenase complex (quinone);5.76518797872368e-10!GO:0045271;respiratory chain complex I;5.76518797872368e-10!GO:0005747;mitochondrial respiratory chain complex I;5.76518797872368e-10!GO:0000785;chromatin;5.86410641625789e-10!GO:0042775;organelle ATP synthesis coupled electron transport;7.61565472339059e-10!GO:0042773;ATP synthesis coupled electron transport;7.61565472339059e-10!GO:0008639;small protein conjugating enzyme activity;8.06943158259576e-10!GO:0004842;ubiquitin-protein ligase activity;1.24384366938435e-09!GO:0016607;nuclear speck;1.37749582083548e-09!GO:0006333;chromatin assembly or disassembly;1.59785466661925e-09!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;1.68468528359842e-09!GO:0009055;electron carrier activity;2.20339322830953e-09!GO:0005635;nuclear envelope;2.82888136318109e-09!GO:0006260;DNA replication;3.56099325468477e-09!GO:0044248;cellular catabolic process;4.74021300466101e-09!GO:0006281;DNA repair;4.93851596691071e-09!GO:0017038;protein import;5.70835472632317e-09!GO:0019787;small conjugating protein ligase activity;5.71339165311936e-09!GO:0005761;mitochondrial ribosome;5.94853210461725e-09!GO:0000313;organellar ribosome;5.94853210461725e-09!GO:0016568;chromatin modification;6.26179849998968e-09!GO:0051186;cofactor metabolic process;6.52886021401837e-09!GO:0000279;M phase;6.67994009275779e-09!GO:0006413;translational initiation;8.72680949316443e-09!GO:0003743;translation initiation factor activity;1.28704721377356e-08!GO:0007010;cytoskeleton organization and biogenesis;1.45040307497647e-08!GO:0031965;nuclear membrane;1.59713889423848e-08!GO:0016564;transcription repressor activity;1.67121502487113e-08!GO:0004386;helicase activity;1.78617030037134e-08!GO:0006793;phosphorus metabolic process;2.06453720281653e-08!GO:0006796;phosphate metabolic process;2.06453720281653e-08!GO:0006446;regulation of translational initiation;2.510023366297e-08!GO:0009719;response to endogenous stimulus;2.7872603851671e-08!GO:0065004;protein-DNA complex assembly;3.25874525345383e-08!GO:0003714;transcription corepressor activity;3.61080141313565e-08!GO:0043067;regulation of programmed cell death;3.72922405020076e-08!GO:0042981;regulation of apoptosis;5.1553186762283e-08!GO:0008026;ATP-dependent helicase activity;5.54327364346357e-08!GO:0008565;protein transporter activity;5.54327364346357e-08!GO:0044453;nuclear membrane part;7.27991214943874e-08!GO:0016881;acid-amino acid ligase activity;8.2575773562132e-08!GO:0050789;regulation of biological process;9.19346262465424e-08!GO:0016310;phosphorylation;1.05012576094381e-07!GO:0031324;negative regulation of cellular metabolic process;1.05150442687246e-07!GO:0006888;ER to Golgi vesicle-mediated transport;1.44922062991757e-07!GO:0045786;negative regulation of progression through cell cycle;1.4952123450314e-07!GO:0005813;centrosome;1.58265050483608e-07!GO:0016563;transcription activator activity;1.98065497739025e-07!GO:0016879;ligase activity, forming carbon-nitrogen bonds;2.1567246141128e-07!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;2.78887746905359e-07!GO:0005815;microtubule organizing center;3.32460227196444e-07!GO:0000245;spliceosome assembly;3.53531957516067e-07!GO:0043069;negative regulation of programmed cell death;3.56006511831837e-07!GO:0051170;nuclear import;3.86071313454972e-07!GO:0005788;endoplasmic reticulum lumen;4.152598377193e-07!GO:0005667;transcription factor complex;4.17321261572806e-07!GO:0005643;nuclear pore;5.02549112421315e-07!GO:0006461;protein complex assembly;5.82069830775327e-07!GO:0042175;nuclear envelope-endoplasmic reticulum network;5.92167332934708e-07!GO:0032446;protein modification by small protein conjugation;7.44242535055473e-07!GO:0006606;protein import into nucleus;7.49157583956154e-07!GO:0043066;negative regulation of apoptosis;7.92012647489807e-07!GO:0031252;leading edge;8.52325288452083e-07!GO:0051246;regulation of protein metabolic process;8.77800090065666e-07!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;9.23968701647638e-07!GO:0006732;coenzyme metabolic process;9.54288377128363e-07!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;1.08207344071556e-06!GO:0005789;endoplasmic reticulum membrane;1.19236227309737e-06!GO:0043566;structure-specific DNA binding;1.19638094178376e-06!GO:0031497;chromatin assembly;1.22678207327411e-06!GO:0006403;RNA localization;1.2664677352209e-06!GO:0030532;small nuclear ribonucleoprotein complex;1.27127281509707e-06!GO:0006334;nucleosome assembly;1.31069186231283e-06!GO:0009060;aerobic respiration;1.59252931474252e-06!GO:0050657;nucleic acid transport;1.61223123948921e-06!GO:0051236;establishment of RNA localization;1.61223123948921e-06!GO:0050658;RNA transport;1.61223123948921e-06!GO:0006916;anti-apoptosis;1.69185026359293e-06!GO:0009892;negative regulation of metabolic process;1.77486853198146e-06!GO:0005768;endosome;1.84181214480599e-06!GO:0048522;positive regulation of cellular process;1.84375580989415e-06!GO:0046930;pore complex;2.07944389633275e-06!GO:0016481;negative regulation of transcription;2.37127835211751e-06!GO:0019829;cation-transporting ATPase activity;2.59260676312276e-06!GO:0003697;single-stranded DNA binding;2.59260676312276e-06!GO:0016567;protein ubiquitination;2.60532540606934e-06!GO:0042254;ribosome biogenesis and assembly;2.8336407917205e-06!GO:0008361;regulation of cell size;2.88588877668292e-06!GO:0030120;vesicle coat;3.30454459027057e-06!GO:0030662;coated vesicle membrane;3.30454459027057e-06!GO:0009259;ribonucleotide metabolic process;4.08719126338365e-06!GO:0030036;actin cytoskeleton organization and biogenesis;4.08719126338365e-06!GO:0044431;Golgi apparatus part;4.27331053546532e-06!GO:0009152;purine ribonucleotide biosynthetic process;4.69200843145227e-06!GO:0016049;cell growth;4.74138095326037e-06!GO:0015986;ATP synthesis coupled proton transport;4.83358514279393e-06!GO:0015985;energy coupled proton transport, down electrochemical gradient;4.83358514279393e-06!GO:0006164;purine nucleotide biosynthetic process;4.83358514279393e-06!GO:0015078;hydrogen ion transmembrane transporter activity;4.97095612242858e-06!GO:0000151;ubiquitin ligase complex;5.46185742091544e-06!GO:0006163;purine nucleotide metabolic process;5.82839231818625e-06!GO:0009150;purine ribonucleotide metabolic process;6.06365589379425e-06!GO:0009260;ribonucleotide biosynthetic process;6.26098370333467e-06!GO:0003713;transcription coactivator activity;6.55317307426884e-06!GO:0016491;oxidoreductase activity;7.45869111018347e-06!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;7.86470703074255e-06!GO:0004812;aminoacyl-tRNA ligase activity;7.86470703074255e-06!GO:0016875;ligase activity, forming carbon-oxygen bonds;7.86470703074255e-06!GO:0008092;cytoskeletal protein binding;1.12011444974621e-05!GO:0043038;amino acid activation;1.24029117791861e-05!GO:0006418;tRNA aminoacylation for protein translation;1.24029117791861e-05!GO:0043039;tRNA aminoacylation;1.24029117791861e-05!GO:0016772;transferase activity, transferring phosphorus-containing groups;1.273401426684e-05!GO:0006357;regulation of transcription from RNA polymerase II promoter;1.39166632562544e-05!GO:0003924;GTPase activity;1.47485238876255e-05!GO:0065007;biological regulation;1.65469685952839e-05!GO:0006399;tRNA metabolic process;1.75088601078245e-05!GO:0048475;coated membrane;1.82211128382556e-05!GO:0030117;membrane coat;1.82211128382556e-05!GO:0048468;cell development;1.90310998073245e-05!GO:0045333;cellular respiration;1.97503210756564e-05!GO:0051329;interphase of mitotic cell cycle;2.02629904737063e-05!GO:0016023;cytoplasmic membrane-bound vesicle;2.05210523991839e-05!GO:0009199;ribonucleoside triphosphate metabolic process;2.1629043385813e-05!GO:0005874;microtubule;2.29007953715596e-05!GO:0030029;actin filament-based process;2.29574281143157e-05!GO:0007243;protein kinase cascade;2.32331853596343e-05!GO:0031982;vesicle;2.37683205262527e-05!GO:0009142;nucleoside triphosphate biosynthetic process;2.43100430501077e-05!GO:0009201;ribonucleoside triphosphate biosynthetic process;2.43100430501077e-05!GO:0019899;enzyme binding;2.43927429503135e-05!GO:0031410;cytoplasmic vesicle;2.445742391458e-05!GO:0009205;purine ribonucleoside triphosphate metabolic process;2.48405918254682e-05!GO:0009144;purine nucleoside triphosphate metabolic process;2.48405918254682e-05!GO:0003724;RNA helicase activity;2.48405918254682e-05!GO:0006754;ATP biosynthetic process;2.48405918254682e-05!GO:0006753;nucleoside phosphate metabolic process;2.48405918254682e-05!GO:0009141;nucleoside triphosphate metabolic process;2.51529231502473e-05!GO:0031988;membrane-bound vesicle;2.55809779621387e-05!GO:0016469;proton-transporting two-sector ATPase complex;2.64686202484985e-05!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;2.77415107317673e-05!GO:0009145;purine nucleoside triphosphate biosynthetic process;2.77415107317673e-05!GO:0065002;intracellular protein transport across a membrane;2.8564710839341e-05!GO:0051028;mRNA transport;2.94479772121635e-05!GO:0046034;ATP metabolic process;2.94915592019284e-05!GO:0045259;proton-transporting ATP synthase complex;3.02049846017521e-05!GO:0005819;spindle;3.06170928460171e-05!GO:0051187;cofactor catabolic process;3.57871100917813e-05!GO:0009056;catabolic process;4.08061660835118e-05!GO:0043623;cellular protein complex assembly;4.74409790672911e-05!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;5.01575119076167e-05!GO:0006099;tricarboxylic acid cycle;5.4987501499672e-05!GO:0046356;acetyl-CoA catabolic process;5.4987501499672e-05!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;5.75460536455831e-05!GO:0048518;positive regulation of biological process;5.77312850442186e-05!GO:0001558;regulation of cell growth;6.80830746033577e-05!GO:0051325;interphase;7.12286574070087e-05!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;7.50924198828944e-05!GO:0031202;RNA splicing factor activity, transesterification mechanism;8.1231541746144e-05!GO:0030867;rough endoplasmic reticulum membrane;8.6081557485833e-05!GO:0005798;Golgi-associated vesicle;9.26374295758325e-05!GO:0004674;protein serine/threonine kinase activity;0.000107703174027516!GO:0008047;enzyme activator activity;0.000111165113134164!GO:0005096;GTPase activator activity;0.000111165113134164!GO:0015077;monovalent inorganic cation transmembrane transporter activity;0.000118398376862505!GO:0016787;hydrolase activity;0.000129175068486513!GO:0045454;cell redox homeostasis;0.000129610392678897!GO:0009109;coenzyme catabolic process;0.000131969582790394!GO:0006613;cotranslational protein targeting to membrane;0.000132852934285044!GO:0016740;transferase activity;0.00017984651218538!GO:0005048;signal sequence binding;0.000215680653709907!GO:0045935;positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.000227964240958768!GO:0000139;Golgi membrane;0.000233459703751995!GO:0007249;I-kappaB kinase/NF-kappaB cascade;0.000259230935296856!GO:0007051;spindle organization and biogenesis;0.00026549210987549!GO:0031072;heat shock protein binding;0.000275513430651718!GO:0006091;generation of precursor metabolites and energy;0.000282140681047725!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;0.000300540160241685!GO:0005769;early endosome;0.000310189807332974!GO:0006364;rRNA processing;0.000311744239956438!GO:0000775;chromosome, pericentric region;0.000327597885584307!GO:0003690;double-stranded DNA binding;0.000342675725781437!GO:0005762;mitochondrial large ribosomal subunit;0.000363307500881267!GO:0000315;organellar large ribosomal subunit;0.000363307500881267!GO:0051168;nuclear export;0.000368894405629447!GO:0016859;cis-trans isomerase activity;0.00040387771395932!GO:0051789;response to protein stimulus;0.000410231335063198!GO:0006986;response to unfolded protein;0.000410231335063198!GO:0030027;lamellipodium;0.000420534985342407!GO:0006084;acetyl-CoA metabolic process;0.000423336371826351!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;0.0004661892353264!GO:0051188;cofactor biosynthetic process;0.000484045885839627!GO:0051427;hormone receptor binding;0.000489104094525306!GO:0006261;DNA-dependent DNA replication;0.000492141410562578!GO:0003729;mRNA binding;0.000492713973192878!GO:0045892;negative regulation of transcription, DNA-dependent;0.00049379371384777!GO:0045941;positive regulation of transcription;0.000495486453581744!GO:0009117;nucleotide metabolic process;0.000515740980065283!GO:0016853;isomerase activity;0.000538292865824187!GO:0016072;rRNA metabolic process;0.000599632891449828!GO:0008186;RNA-dependent ATPase activity;0.000610190811141884!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;0.000616365966146379!GO:0016044;membrane organization and biogenesis;0.00062089710436289!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.000706527843955265!GO:0007264;small GTPase mediated signal transduction;0.000732473719196411!GO:0065009;regulation of a molecular function;0.000806807366500925!GO:0040008;regulation of growth;0.000843127342566517!GO:0033116;ER-Golgi intermediate compartment membrane;0.000860028526120855!GO:0045893;positive regulation of transcription, DNA-dependent;0.000868000766904167!GO:0008250;oligosaccharyl transferase complex;0.000875833974943602!GO:0005905;coated pit;0.00087889796339084!GO:0000786;nucleosome;0.000916599866638901!GO:0035257;nuclear hormone receptor binding;0.000980415555288343!GO:0044440;endosomal part;0.00101576021767117!GO:0010008;endosome membrane;0.00101576021767117!GO:0000075;cell cycle checkpoint;0.00112662369011355!GO:0005839;proteasome core complex (sensu Eukaryota);0.00117746257088836!GO:0008139;nuclear localization sequence binding;0.00124492978748437!GO:0005885;Arp2/3 protein complex;0.00127042041166553!GO:0005770;late endosome;0.00127165143344445!GO:0006950;response to stress;0.0013507133512851!GO:0007017;microtubule-based process;0.00140005443243001!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.00161142697184463!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.00161996979760245!GO:0030132;clathrin coat of coated pit;0.00176408568974398!GO:0004004;ATP-dependent RNA helicase activity;0.00180105587951158!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.00180251066946717!GO:0015399;primary active transmembrane transporter activity;0.00180251066946717!GO:0051920;peroxiredoxin activity;0.0018143582114101!GO:0005525;GTP binding;0.00183937170346513!GO:0006752;group transfer coenzyme metabolic process;0.00192602642548999!GO:0018196;peptidyl-asparagine modification;0.00196698952992965!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.00196698952992965!GO:0004576;oligosaccharyl transferase activity;0.00205482661508592!GO:0019222;regulation of metabolic process;0.00210685626768801!GO:0042802;identical protein binding;0.00211670292570398!GO:0043021;ribonucleoprotein binding;0.00213949180738929!GO:0005791;rough endoplasmic reticulum;0.00213949180738929!GO:0001726;ruffle;0.00253548609596597!GO:0009108;coenzyme biosynthetic process;0.00255219403939729!GO:0051101;regulation of DNA binding;0.00255691666591926!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.00255694352779054!GO:0000792;heterochromatin;0.00256747251786771!GO:0006338;chromatin remodeling;0.00257510926855965!GO:0043492;ATPase activity, coupled to movement of substances;0.00268899742462651!GO:0007005;mitochondrion organization and biogenesis;0.00268899742462651!GO:0003702;RNA polymerase II transcription factor activity;0.00277099539902605!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.00284441946532748!GO:0005856;cytoskeleton;0.00287212453928104!GO:0048471;perinuclear region of cytoplasm;0.00291243335667986!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;0.00308119464247153!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.00334605953008953!GO:0007179;transforming growth factor beta receptor signaling pathway;0.00339106179450447!GO:0007050;cell cycle arrest;0.00345347380143131!GO:0007242;intracellular signaling cascade;0.00353912119287961!GO:0019867;outer membrane;0.00354850689604791!GO:0016301;kinase activity;0.00359463557828364!GO:0000226;microtubule cytoskeleton organization and biogenesis;0.00379899518940253!GO:0005741;mitochondrial outer membrane;0.0038080546559095!GO:0030663;COPI coated vesicle membrane;0.0038080546559095!GO:0030126;COPI vesicle coat;0.0038080546559095!GO:0017166;vinculin binding;0.00386161397819061!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.00388983761518659!GO:0004298;threonine endopeptidase activity;0.00392954516386617!GO:0006979;response to oxidative stress;0.00393441403165849!GO:0007030;Golgi organization and biogenesis;0.0039345628503611!GO:0008022;protein C-terminus binding;0.00399614404154112!GO:0003682;chromatin binding;0.0040217198870224!GO:0022415;viral reproductive process;0.00410502642273979!GO:0031968;organelle outer membrane;0.00414640606928171!GO:0007265;Ras protein signal transduction;0.00428743224725434!GO:0006402;mRNA catabolic process;0.00449348271125529!GO:0003779;actin binding;0.00450168854434899!GO:0016363;nuclear matrix;0.00464126238271245!GO:0005581;collagen;0.0047300881977389!GO:0051287;NAD binding;0.0047300881977389!GO:0051252;regulation of RNA metabolic process;0.00474568108310259!GO:0016779;nucleotidyltransferase activity;0.00524686723031978!GO:0015980;energy derivation by oxidation of organic compounds;0.00547305403278147!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.00554028996532534!GO:0030134;ER to Golgi transport vesicle;0.00554028996532534!GO:0032561;guanyl ribonucleotide binding;0.00554028996532534!GO:0019001;guanyl nucleotide binding;0.00554028996532534!GO:0008283;cell proliferation;0.00555073935084536!GO:0005852;eukaryotic translation initiation factor 3 complex;0.0055896138840069!GO:0005083;small GTPase regulator activity;0.00564811119846945!GO:0000314;organellar small ribosomal subunit;0.00578106981312338!GO:0005763;mitochondrial small ribosomal subunit;0.00578106981312338!GO:0007178;transmembrane receptor protein serine/threonine kinase signaling pathway;0.00609369304256104!GO:0030137;COPI-coated vesicle;0.00612044390283139!GO:0005100;Rho GTPase activator activity;0.00632098141499315!GO:0005099;Ras GTPase activator activity;0.00652084115735933!GO:0007569;cell aging;0.00669482076189422!GO:0000776;kinetochore;0.00679657051201338!GO:0003684;damaged DNA binding;0.00703018290889471!GO:0009966;regulation of signal transduction;0.00703018290889471!GO:0006612;protein targeting to membrane;0.00703018290889471!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00703018290889471!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00703018290889471!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00703018290889471!GO:0006414;translational elongation;0.00706687855590133!GO:0051045;negative regulation of membrane protein ectodomain proteolysis;0.00709071886917622!GO:0051043;regulation of membrane protein ectodomain proteolysis;0.00709071886917622!GO:0017015;regulation of transforming growth factor beta receptor signaling pathway;0.00764668278252518!GO:0006892;post-Golgi vesicle-mediated transport;0.0076624895695058!GO:0016706;oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors;0.00769425128216007!GO:0048500;signal recognition particle;0.00791155776266196!GO:0006607;NLS-bearing substrate import into nucleus;0.00796586231605806!GO:0006383;transcription from RNA polymerase III promoter;0.00818872454640317!GO:0016197;endosome transport;0.00821201163317456!GO:0043488;regulation of mRNA stability;0.0084204883539093!GO:0043487;regulation of RNA stability;0.0084204883539093!GO:0005657;replication fork;0.00855519098851257!GO:0006897;endocytosis;0.00870556091168051!GO:0010324;membrane invagination;0.00870556091168051!GO:0005862;muscle thin filament tropomyosin;0.00925045347471036!GO:0006891;intra-Golgi vesicle-mediated transport;0.0092661909909757!GO:0004177;aminopeptidase activity;0.00944311009157433!GO:0015631;tubulin binding;0.00957570445971024!GO:0006354;RNA elongation;0.00966211555967411!GO:0000059;protein import into nucleus, docking;0.00971780967269401!GO:0016584;nucleosome positioning;0.0101144258652177!GO:0030695;GTPase regulator activity;0.0104122107970036!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.010690830021505!GO:0008286;insulin receptor signaling pathway;0.0109182333642104!GO:0030127;COPII vesicle coat;0.0110317590516194!GO:0012507;ER to Golgi transport vesicle membrane;0.0110317590516194!GO:0003899;DNA-directed RNA polymerase activity;0.01123607058871!GO:0000902;cell morphogenesis;0.0113380471950186!GO:0032989;cellular structure morphogenesis;0.0113380471950186!GO:0032508;DNA duplex unwinding;0.0113380471950186!GO:0032392;DNA geometric change;0.0113380471950186!GO:0000910;cytokinesis;0.0113380471950186!GO:0007088;regulation of mitosis;0.0114543477310702!GO:0030658;transport vesicle membrane;0.0115725171363238!GO:0030133;transport vesicle;0.0116500766337372!GO:0043284;biopolymer biosynthetic process;0.0118233775076772!GO:0007167;enzyme linked receptor protein signaling pathway;0.0121582258867715!GO:0016281;eukaryotic translation initiation factor 4F complex;0.0122060459391436!GO:0030659;cytoplasmic vesicle membrane;0.012227298923447!GO:0051128;regulation of cellular component organization and biogenesis;0.0124226162588707!GO:0016773;phosphotransferase activity, alcohol group as acceptor;0.0125225388834057!GO:0003746;translation elongation factor activity;0.0130816018282347!GO:0048487;beta-tubulin binding;0.0130816018282347!GO:0003711;transcription elongation regulator activity;0.0131407572803067!GO:0051270;regulation of cell motility;0.0133598374811188!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.0133598374811188!GO:0015002;heme-copper terminal oxidase activity;0.0133598374811188!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.0133598374811188!GO:0004129;cytochrome-c oxidase activity;0.0133598374811188!GO:0040029;regulation of gene expression, epigenetic;0.0135584768125758!GO:0031901;early endosome membrane;0.0136268389199748!GO:0030865;cortical cytoskeleton organization and biogenesis;0.0136583755663644!GO:0016272;prefoldin complex;0.0139570656210831!GO:0005684;U2-dependent spliceosome;0.0139877647313444!GO:0051087;chaperone binding;0.0141197701237552!GO:0051052;regulation of DNA metabolic process;0.0142596287464666!GO:0051098;regulation of binding;0.0143445334671761!GO:0009165;nucleotide biosynthetic process;0.0151815981329266!GO:0031625;ubiquitin protein ligase binding;0.0153272164420018!GO:0003678;DNA helicase activity;0.0153367394636376!GO:0043414;biopolymer methylation;0.0155957190438366!GO:0019843;rRNA binding;0.0156336968235126!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.0159644453589925!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.0159644453589925!GO:0007052;mitotic spindle organization and biogenesis;0.0160429144115394!GO:0043681;protein import into mitochondrion;0.0162119430872587!GO:0030521;androgen receptor signaling pathway;0.0165381296656514!GO:0006268;DNA unwinding during replication;0.0165764910444624!GO:0044262;cellular carbohydrate metabolic process;0.0171161736306234!GO:0005938;cell cortex;0.0171679651063369!GO:0006401;RNA catabolic process;0.0174595571687846!GO:0007346;regulation of progression through mitotic cell cycle;0.0180062854207605!GO:0000079;regulation of cyclin-dependent protein kinase activity;0.0183837581198291!GO:0050790;regulation of catalytic activity;0.0183987677971804!GO:0008154;actin polymerization and/or depolymerization;0.0184342383159716!GO:0033673;negative regulation of kinase activity;0.0188128840607365!GO:0006469;negative regulation of protein kinase activity;0.0188128840607365!GO:0042393;histone binding;0.0189657954012113!GO:0008287;protein serine/threonine phosphatase complex;0.0190908585006858!GO:0031529;ruffle organization and biogenesis;0.0196838492047558!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.019823346752491!GO:0005875;microtubule associated complex;0.0200267856013218!GO:0043065;positive regulation of apoptosis;0.020319843343263!GO:0030880;RNA polymerase complex;0.0205652497752954!GO:0005583;fibrillar collagen;0.0212060687874736!GO:0040011;locomotion;0.0220238808056019!GO:0043068;positive regulation of programmed cell death;0.0223571796470175!GO:0006611;protein export from nucleus;0.0223702993988808!GO:0030119;AP-type membrane coat adaptor complex;0.0224162869544567!GO:0030118;clathrin coat;0.0224767278921966!GO:0019206;nucleoside kinase activity;0.022841000187149!GO:0022890;inorganic cation transmembrane transporter activity;0.0228642031797887!GO:0009967;positive regulation of signal transduction;0.0229289163612098!GO:0006376;mRNA splice site selection;0.0233282481100654!GO:0000389;nuclear mRNA 3'-splice site recognition;0.0233282481100654!GO:0005869;dynactin complex;0.0234943640707189!GO:0045045;secretory pathway;0.0237400520490228!GO:0044452;nucleolar part;0.0237537113667219!GO:0006405;RNA export from nucleus;0.023919092885963!GO:0031124;mRNA 3'-end processing;0.023919092885963!GO:0030660;Golgi-associated vesicle membrane;0.0239986610044015!GO:0000307;cyclin-dependent protein kinase holoenzyme complex;0.0241145292423055!GO:0030100;regulation of endocytosis;0.0241433766979245!GO:0040012;regulation of locomotion;0.0245834024330706!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.0247326240283565!GO:0045047;protein targeting to ER;0.0247326240283565!GO:0044433;cytoplasmic vesicle part;0.025228959535685!GO:0005773;vacuole;0.0257887404239675!GO:0046426;negative regulation of JAK-STAT cascade;0.0259931810074242!GO:0051493;regulation of cytoskeleton organization and biogenesis;0.026126714580245!GO:0033043;regulation of organelle organization and biogenesis;0.026126714580245!GO:0006352;transcription initiation;0.0261367727083908!GO:0008632;apoptotic program;0.0261367727083908!GO:0050178;phenylpyruvate tautomerase activity;0.0261367727083908!GO:0007093;mitotic cell cycle checkpoint;0.0261476632302606!GO:0000922;spindle pole;0.0262372330037555!GO:0006740;NADPH regeneration;0.0262372330037555!GO:0006098;pentose-phosphate shunt;0.0262372330037555!GO:0006984;ER-nuclear signaling pathway;0.026639506665769!GO:0000082;G1/S transition of mitotic cell cycle;0.0279961516047544!GO:0035035;histone acetyltransferase binding;0.0282476370827929!GO:0000118;histone deacetylase complex;0.0284359772475255!GO:0005720;nuclear heterochromatin;0.0290555890781285!GO:0006284;base-excision repair;0.0293488087212932!GO:0032259;methylation;0.0295945001738552!GO:0035258;steroid hormone receptor binding;0.0299373393717533!GO:0032906;transforming growth factor-beta2 production;0.0300449592813488!GO:0032909;regulation of transforming growth factor-beta2 production;0.0300449592813488!GO:0019904;protein domain specific binding;0.0303734706086438!GO:0019205;nucleobase, nucleoside, nucleotide kinase activity;0.030493010476592!GO:0016667;oxidoreductase activity, acting on sulfur group of donors;0.0311473175343585!GO:0008601;protein phosphatase type 2A regulator activity;0.0315223394259689!GO:0009081;branched chain family amino acid metabolic process;0.0315588806695897!GO:0044420;extracellular matrix part;0.0316971983382911!GO:0030031;cell projection biogenesis;0.0321119487546777!GO:0008243;plasminogen activator activity;0.0321630423310498!GO:0019798;procollagen-proline dioxygenase activity;0.0322353845886302!GO:0008094;DNA-dependent ATPase activity;0.0323459650135788!GO:0008312;7S RNA binding;0.0324537709791194!GO:0030911;TPR domain binding;0.0328106144943515!GO:0009893;positive regulation of metabolic process;0.0334159821190285!GO:0018193;peptidyl-amino acid modification;0.0335969623421868!GO:0002102;podosome;0.0350209479455069!GO:0003756;protein disulfide isomerase activity;0.0350209479455069!GO:0016864;intramolecular oxidoreductase activity, transposing S-S bonds;0.0350209479455069!GO:0030131;clathrin adaptor complex;0.0359292837570263!GO:0031371;ubiquitin conjugating enzyme complex;0.0366817191294199!GO:0031543;peptidyl-proline dioxygenase activity;0.0366817191294199!GO:0005876;spindle microtubule;0.0368687901346772!GO:0030032;lamellipodium biogenesis;0.0369116064789878!GO:0002763;positive regulation of myeloid leukocyte differentiation;0.0369139919029186!GO:0000287;magnesium ion binding;0.0370590958440232!GO:0051348;negative regulation of transferase activity;0.0374692928807288!GO:0006302;double-strand break repair;0.0374692928807288!GO:0006595;polyamine metabolic process;0.0375751408099059!GO:0030128;clathrin coat of endocytic vesicle;0.037708026021947!GO:0030669;clathrin-coated endocytic vesicle membrane;0.037708026021947!GO:0030122;AP-2 adaptor complex;0.037708026021947!GO:0030984;kininogen binding;0.0379499672161151!GO:0004213;cathepsin B activity;0.0379499672161151!GO:0031123;RNA 3'-end processing;0.0385101666457121!GO:0005665;DNA-directed RNA polymerase II, core complex;0.0385984047769393!GO:0030833;regulation of actin filament polymerization;0.0390512748760497!GO:0005801;cis-Golgi network;0.0391990468377463!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.039562801445498!GO:0000428;DNA-directed RNA polymerase complex;0.039562801445498!GO:0030866;cortical actin cytoskeleton organization and biogenesis;0.0402019913993868!GO:0030145;manganese ion binding;0.0403314238834545!GO:0043241;protein complex disassembly;0.0407168384390608!GO:0043624;cellular protein complex disassembly;0.0407337000171567!GO:0008629;induction of apoptosis by intracellular signals;0.0413777266763172!GO:0000159;protein phosphatase type 2A complex;0.0424213517406171!GO:0007006;mitochondrial membrane organization and biogenesis;0.0432362201429418!GO:0005811;lipid particle;0.0434216513994883!GO:0031418;L-ascorbic acid binding;0.0436688123982085!GO:0030041;actin filament polymerization;0.0439315573381129!GO:0008242;omega peptidase activity;0.0441725729829241!GO:0004672;protein kinase activity;0.045064619109193!GO:0000184;mRNA catabolic process, nonsense-mediated decay;0.0451948850624673!GO:0032984;macromolecular complex disassembly;0.0455909266173521!GO:0043433;negative regulation of transcription factor activity;0.0458191275584093!GO:0030518;steroid hormone receptor signaling pathway;0.0462006859965857!GO:0017134;fibroblast growth factor binding;0.0466558937520981!GO:0050681;androgen receptor binding;0.046809011999522!GO:0006118;electron transport;0.0470661008960144!GO:0044448;cell cortex part;0.0470892811602099!GO:0008064;regulation of actin polymerization and/or depolymerization;0.0473581868913043!GO:0015992;proton transport;0.0479663324910504!GO:0004680;casein kinase activity;0.0483914939601155!GO:0032153;cell division site;0.0484336024570921!GO:0032155;cell division site part;0.0484336024570921!GO:0016408;C-acyltransferase activity;0.0488400175297845!GO:0008654;phospholipid biosynthetic process;0.0490082721489104!GO:0006626;protein targeting to mitochondrion;0.0491479212933679!GO:0007266;Rho protein signal transduction;0.0494777921610924!GO:0006289;nucleotide-excision repair;0.0494777921610924!GO:0000049;tRNA binding;0.0494777921610924!GO:0008757;S-adenosylmethionine-dependent methyltransferase activity;0.0498048189016729
 |sample_id=10694
 |sample_note=
@@ Line 76: / Line 98: @@
 |sample_tissue=ANATOMICAL SYSTEM
 |top_motifs=ADNP_IRX_SIX_ZHX:1.66764756073;VSX1,2:1.3691630062;PATZ1:1.31500794717;CDC5L:1.31060339071;FOXL1:1.30673265246;MYBL2:1.26386585833;POU5F1:1.25577963826;HMGA1,2:1.23977013301;HOXA9_MEIS1:1.22746468598;MZF1:1.18445095705;FOX{F1,F2,J1}:1.12034270516;POU6F1:1.10040800381;GLI1..3:1.08242752088;HIC1:1.08142091005;GFI1:1.07421610245;PRDM1:1.03326545665;TFAP4:1.02278818778;TEAD1:0.984832571086;NKX3-1:0.981452996499;HAND1,2:0.97478716228;POU3F1..4:0.971995734344;PDX1:0.969301031259;SOX17:0.932635751437;HBP1_HMGB_SSRP1_UBTF:0.920468687124;XBP1:0.917330142895;NR6A1:0.914606935549;ZNF423:0.905279171984;ZNF238:0.895357271959;TLX1..3_NFIC{dimer}:0.877773400616;TFAP2B:0.875909306705;GTF2I:0.85831753533;ATF6:0.85255002178;TFAP2{A,C}:0.830249409976;SPZ1:0.827648610586;RREB1:0.813851216749;SRF:0.812650099081;LEF1_TCF7_TCF7L1,2:0.783919990588;RORA:0.769288837953;STAT5{A,B}:0.765345299034;MAZ:0.708353197606;KLF4:0.705758579295;SOX5:0.666467931833;TFDP1:0.657580800337;NFATC1..3:0.649985095613;TBP:0.641427426781;MTE{core}:0.639493650275;LHX3,4:0.629760756268;PITX1..3:0.625037817135;HOX{A6,A7,B6,B7}:0.609229507846;GZF1:0.603383675805;PAX3,7:0.594777567962;TFCP2:0.594039780957;GFI1B:0.591184720424;PAX8:0.553852507561;NR1H4:0.552752465361;FOXA2:0.551038668819;PPARG:0.547946845328;EGR1..3:0.51932328614;HSF1,2:0.515950840921;TAL1_TCF{3,4,12}:0.514998223058;FOX{I1,J2}:0.498592567013;NFIX:0.48063320787;DMAP1_NCOR{1,2}_SMARC:0.475274517397;ZBTB6:0.462532129294;TP53:0.456173958336;HOX{A5,B5}:0.45612625787;MED-1{core}:0.450709451496;FOXD3:0.407542879482;MTF1:0.406150781407;MYFfamily:0.375827607286;FOX{D1,D2}:0.365750845914;HMX1:0.356532323348;TBX4,5:0.355206813518;ZFP161:0.342703445054;ZNF148:0.342353591243;JUN:0.336575135822;EVI1:0.316922038629;FOXP1:0.305017611157;NHLH1,2:0.300439451556;GTF2A1,2:0.298443847551;PAX1,9:0.24887944171;SOX2:0.245121249685;ZBTB16:0.195593217908;FOXP3:0.194844078024;EN1,2:0.194149712488;BREu{core}:0.182047020199;AHR_ARNT_ARNT2:0.181317097583;HNF1A:0.176736815545;NFE2:0.175570077974;MYB:0.166394679404;POU2F1..3:0.166326582494;HLF:0.164414828131;DBP:0.163830717181;BACH2:0.149816469045;MEF2{A,B,C,D}:0.145800572791;NKX2-3_NKX2-5:0.14564026207;HOX{A4,D4}:0.144505871857;AR:0.136142761977;BPTF:0.12559368701;NANOG:0.117191297808;PAX4:0.111234828847;RUNX1..3:0.101217780056;ONECUT1,2:0.0996854913085;NANOG{mouse}:0.0858733387464;E2F1..5:0.0850161469425;HES1:0.0732299250071;FOSL2:0.0332918349459;RBPJ:0.0325911668113;PRRX1,2:0.0259608680752;STAT2,4,6:0.0254775600927;CDX1,2,4:0.0184973758017;NKX2-1,4:0.0176076498323;FOS_FOS{B,L1}_JUN{B,D}:0.0102213711083;TOPORS:0.00120053365595;NFE2L2:-0.00342755512939;RFX1:-0.0131072433781;ESR1:-0.0206060053989;CUX2:-0.0286991632226;OCT4_SOX2{dimer}:-0.0396956904781;AIRE:-0.0444261409457;PBX1:-0.0496078926973;GATA6:-0.0537075322433;SP1:-0.0566802542204;NKX6-1,2:-0.0724796541081;SMAD1..7,9:-0.0846445230638;REST:-0.0867908503894;FOXO1,3,4:-0.091095279536;CEBPA,B_DDIT3:-0.127694449607;MAFB:-0.131797115251;IKZF2:-0.138281216291;T:-0.140288102513;ESRRA:-0.154251026913;HNF4A_NR2F1,2:-0.167497832096;ATF5_CREB3:-0.183688241155;XCPE1{core}:-0.187808588236;PAX6:-0.192212038319;NKX2-2,8:-0.194789545223;RFX2..5_RFXANK_RFXAP:-0.20115016979;TGIF1:-0.212737779792;RXR{A,B,G}:-0.227807692994;UFEwm:-0.24349587203;TLX2:-0.264737950893;NFKB1_REL_RELA:-0.283912039593;SOX{8,9,10}:-0.285911228713;ZNF384:-0.293483974943;IRF1,2:-0.31771538091;POU1F1:-0.34122897888;ZNF143:-0.345421000422;FOXQ1:-0.351512086664;NR3C1:-0.354362890546;GCM1,2:-0.408547741827;NKX3-2:-0.411269118625;CRX:-0.425550223581;ATF2:-0.450545939255;NFIL3:-0.456917689425;GATA4:-0.474658906906;IRF7:-0.478729406977;LMO2:-0.489801406401;ETS1,2:-0.494679088895;FOXM1:-0.500003456535;PAX2:-0.518512799728;EBF1:-0.539843369715;IKZF1:-0.564027026559;FOXN1:-0.575900134837;EP300:-0.580409605811;SPI1:-0.620655893883;ZIC1..3:-0.64271443865;YY1:-0.653861315994;SPIB:-0.706445772449;NRF1:-0.708609982092;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.730128811245;NFY{A,B,C}:-0.755022813912;PAX5:-0.755705367371;ATF4:-0.781585366112;ZEB1:-0.803760987843;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.80771144772;NR5A1,2:-0.827858302057;ALX4:-0.874003456583;SREBF1,2:-0.894919442655;CREB1:-0.900669402202;SNAI1..3:-0.906639442399;TEF:-0.912246686708;ELK1,4_GABP{A,B1}:-0.933594940493;ARID5B:-1.01051829105;RXRA_VDR{dimer}:-1.03158758278;MYOD1:-1.10577666337;NFE2L1:-1.15808397558;HIF1A:-1.16388873958;ALX1:-1.28954466948;bHLH_family:-1.29456355262;ELF1,2,4:-1.30997419915;STAT1,3:-1.3464459728
+|xref=
+|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10694-109G1;search_select_hide=table117:FF:10694-109G1
 }}

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FF:10694-109G1: Difference between revisions

From FANTOM5_SSTAR

Latest revision as of 14:33, 3 June 2020

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	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0