FFCP PHASE1:Hg19::chr11:66824276..66824298,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=29984 | |EntrezGene=29984 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=670 | |HGNC=670 | ||
|TSSclassifier=strong | |||
|UniProt=O00212 | |UniProt=O00212 | ||
|association_with_transcript=0bp_to_ENST00000308831,NM_014578,uc001ojv.2_5end | |association_with_transcript=0bp_to_ENST00000308831,NM_014578,uc001ojv.2_5end | ||
|cluster_id=chr11:66824276..66824298,+ | |||
|coexpression_cluster_id=C511 | |coexpression_cluster_id=C511 | ||
|description=CAGE_peak_2_at_RHOD_5end | |description=CAGE_peak_2_at_RHOD_5end | ||
|id=chr11:66824276..66824298,+ | |id=chr11:66824276..66824298,+ | ||
|ontology_enrichment_celltype=CL:0000066!2.14e-35!254;CL:0000220!2.62e-18!246;CL:0002321!4.89e-18!248;CL:0002076!3.51e-13!43;CL:0000223!2.02e-11!59;CL:0000076!9.60e-10!62;CL:0000222!3.08e-08!119;CL:0002251!4.03e-07!21;CL:0000548!7.32e-07!679;CL:0000004!7.32e-07!679;CL:0000255!7.32e-07!679 | |ontology_enrichment_celltype=CL:0000066!2.14e-35!254;CL:0000220!2.62e-18!246;CL:0002321!4.89e-18!248;CL:0002076!3.51e-13!43;CL:0000223!2.02e-11!59;CL:0000076!9.60e-10!62;CL:0000222!3.08e-08!119;CL:0002251!4.03e-07!21;CL:0000548!7.32e-07!679;CL:0000004!7.32e-07!679;CL:0000255!7.32e-07!679 | ||
|ontology_enrichment_celltype_v019=CL:0002076;4.92e-10;42!CL:0002251;5.46e-07;20!CL:0000349;5.47e-07;19!CL:0002368;6.13e-07;13 | |||
|ontology_enrichment_celltype_v019_2=CL:0000066,1.73e-36,253;CL:0002321,2.46e-19,250;CL:0002076,1.57e-13,42;CL:0000223,1.88e-11,58;CL:0000076,9.40e-11,63;CL:0000222,1.10e-08,121;CL:0002251,4.70e-07,20;CL:0002368,6.00e-07,13;CL:0000349,7.83e-07,19 | |||
|ontology_enrichment_development_v019=CL:0000223;9.06e-07;58 | |||
|ontology_enrichment_disease=DOID:305!1.28e-08!106 | |ontology_enrichment_disease=DOID:305!1.28e-08!106 | ||
|ontology_enrichment_disease_v019=DOID:299;8.48e-07;25 | |||
|ontology_enrichment_disease_v019_2=DOID:305,1.97e-08,106;DOID:299,5.73e-07,25 | |||
|ontology_enrichment_uberon=UBERON:0003104!2.16e-16!238;UBERON:0009142!2.16e-16!238;UBERON:0002100!4.08e-16!216;UBERON:0004119!6.96e-16!169;UBERON:0000925!6.96e-16!169;UBERON:0006595!6.96e-16!169;UBERON:0000481!4.23e-15!347;UBERON:0000468!2.78e-13!659;UBERON:0005256!1.97e-12!143;UBERON:0000475!6.82e-12!365;UBERON:0001007!1.33e-11!155;UBERON:0001555!1.33e-11!155;UBERON:0007026!1.33e-11!155;UBERON:0000466!1.79e-11!126;UBERON:0000464!7.53e-11!104;UBERON:0009569!9.07e-11!113;UBERON:0001048!1.07e-10!168;UBERON:0000483!3.04e-10!309;UBERON:0000077!3.81e-10!130;UBERON:0000119!5.59e-10!312;UBERON:0001004!1.05e-09!72;UBERON:0000490!3.36e-09!138;UBERON:0000477!3.97e-09!286;UBERON:0000467!4.07e-09!625;UBERON:0000480!5.06e-09!626;UBERON:0000915!5.78e-09!52;UBERON:0003914!1.26e-08!118;UBERON:0000064!1.91e-08!219;UBERON:0004921!2.28e-08!129;UBERON:0004185!2.28e-08!129;UBERON:0001444!2.43e-08!48;UBERON:0002050!1.03e-07!605;UBERON:0005423!1.03e-07!605;UBERON:0000923!1.22e-07!604;UBERON:0005291!1.22e-07!604;UBERON:0006598!1.22e-07!604;UBERON:0002532!1.22e-07!604;UBERON:0000922!1.48e-07!612;UBERON:0005631!2.93e-07!14;UBERON:0000158!2.93e-07!14;UBERON:0001041!3.23e-07!98;UBERON:0000486!3.32e-07!82;UBERON:0000161!3.64e-07!35;UBERON:0003064!3.75e-07!37;UBERON:0004923!5.04e-07!57;UBERON:0003102!5.13e-07!95;UBERON:0000926!6.23e-07!448;UBERON:0004120!6.23e-07!448;UBERON:0006603!6.23e-07!448;UBERON:0000063!7.18e-07!97;UBERON:0004111!7.84e-07!241 | |ontology_enrichment_uberon=UBERON:0003104!2.16e-16!238;UBERON:0009142!2.16e-16!238;UBERON:0002100!4.08e-16!216;UBERON:0004119!6.96e-16!169;UBERON:0000925!6.96e-16!169;UBERON:0006595!6.96e-16!169;UBERON:0000481!4.23e-15!347;UBERON:0000468!2.78e-13!659;UBERON:0005256!1.97e-12!143;UBERON:0000475!6.82e-12!365;UBERON:0001007!1.33e-11!155;UBERON:0001555!1.33e-11!155;UBERON:0007026!1.33e-11!155;UBERON:0000466!1.79e-11!126;UBERON:0000464!7.53e-11!104;UBERON:0009569!9.07e-11!113;UBERON:0001048!1.07e-10!168;UBERON:0000483!3.04e-10!309;UBERON:0000077!3.81e-10!130;UBERON:0000119!5.59e-10!312;UBERON:0001004!1.05e-09!72;UBERON:0000490!3.36e-09!138;UBERON:0000477!3.97e-09!286;UBERON:0000467!4.07e-09!625;UBERON:0000480!5.06e-09!626;UBERON:0000915!5.78e-09!52;UBERON:0003914!1.26e-08!118;UBERON:0000064!1.91e-08!219;UBERON:0004921!2.28e-08!129;UBERON:0004185!2.28e-08!129;UBERON:0001444!2.43e-08!48;UBERON:0002050!1.03e-07!605;UBERON:0005423!1.03e-07!605;UBERON:0000923!1.22e-07!604;UBERON:0005291!1.22e-07!604;UBERON:0006598!1.22e-07!604;UBERON:0002532!1.22e-07!604;UBERON:0000922!1.48e-07!612;UBERON:0005631!2.93e-07!14;UBERON:0000158!2.93e-07!14;UBERON:0001041!3.23e-07!98;UBERON:0000486!3.32e-07!82;UBERON:0000161!3.64e-07!35;UBERON:0003064!3.75e-07!37;UBERON:0004923!5.04e-07!57;UBERON:0003102!5.13e-07!95;UBERON:0000926!6.23e-07!448;UBERON:0004120!6.23e-07!448;UBERON:0006603!6.23e-07!448;UBERON:0000063!7.18e-07!97;UBERON:0004111!7.84e-07!241 | ||
|ontology_enrichment_uberon_v019= | |||
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| ||
|short_description=p2@RHOD | |short_description=p2@RHOD | ||
}} | }} |
Latest revision as of 16:39, 19 September 2015
Short description: | p2@RHOD |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_RHOD_5end |
Coexpression cluster: | C511_Placental_Alveolar_Bronchial_amniotic_Gingival_Corneal_Mammary |
Association with transcript: | 0bp_to_ENST00000308831, NM_014578, uc001ojv.2_5end |
EntrezGene: | RHOD |
HGNC: | 670 |
UniProt: | O00212 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell | 1.73e-36 | 253 |
embryonic cell | 2.46e-19 | 250 |
endo-epithelial cell | 1.57e-13 | 42 |
endodermal cell | 1.88e-11 | 58 |
squamous epithelial cell | 9.40e-11 | 63 |
mesodermal cell | 1.10e-08 | 121 |
epithelial cell of alimentary canal | 4.70e-07 | 20 |
respiratory epithelial cell | 6.00e-07 | 13 |
extraembryonic cell | 7.83e-07 | 19 |
Ontology term | p-value | n |
---|---|---|
endoderm-derived structure | 1.40e-15 | 160 |
endoderm | 1.40e-15 | 160 |
presumptive endoderm | 1.40e-15 | 160 |
trunk | 1.44e-14 | 199 |
digestive system | 1.94e-11 | 145 |
digestive tract | 1.94e-11 | 145 |
primitive gut | 1.94e-11 | 145 |
primordium | 1.33e-10 | 160 |
subdivision of trunk | 1.40e-10 | 112 |
respiratory system | 6.43e-10 | 74 |
mesenchyme | 7.62e-10 | 160 |
entire embryonic mesenchyme | 7.62e-10 | 160 |
head | 3.03e-09 | 56 |
epithelial tube | 9.08e-09 | 117 |
thoracic segment of trunk | 1.00e-08 | 52 |
unilaminar epithelium | 1.42e-08 | 148 |
trunk mesenchyme | 1.45e-08 | 122 |
subdivision of head | 1.78e-08 | 49 |
surface structure | 2.68e-08 | 99 |
epithelium | 3.04e-08 | 306 |
organ component layer | 3.13e-08 | 66 |
cell layer | 6.70e-08 | 309 |
subdivision of digestive tract | 6.71e-08 | 118 |
orifice | 1.15e-07 | 36 |
anterior region of body | 1.40e-07 | 62 |
craniocervical region | 1.40e-07 | 62 |
extraembryonic membrane | 1.81e-07 | 14 |
membranous layer | 1.81e-07 | 14 |
foregut | 5.51e-07 | 87 |
multilaminar epithelium | 6.77e-07 | 83 |
mouth | 8.51e-07 | 29 |
stomodeum | 8.51e-07 | 29 |
Ontology term | p-value | n |
---|---|---|
carcinoma | 1.97e-08 | 106 |
adenocarcinoma | 5.73e-07 | 25 |