FFCP PHASE1:Hg19::chr12:71029609..71029628,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr12:71029609..71029628,- | |||
|coexpression_cluster_id=C38 | |coexpression_cluster_id=C38 | ||
|description=CAGE_peak_at_chr12:71029609..71029628,- | |description=CAGE_peak_at_chr12:71029609..71029628,- | ||
|id=chr12:71029609..71029628,- | |id=chr12:71029609..71029628,- | ||
|ontology_enrichment_celltype=CL:0005020!1.84e-07!6;CL:0002138!1.84e-07!6;CL:0005022!1.84e-07!6;CL:0000115!3.66e-07!35 | |ontology_enrichment_celltype=CL:0005020!1.84e-07!6;CL:0002138!1.84e-07!6;CL:0005022!1.84e-07!6;CL:0000115!3.66e-07!35 | ||
|ontology_enrichment_celltype_v019=CL:0002138;2.72e-27;6!CL:0002262;5.69e-21;2!CL:1000398;5.69e-21;2!CL:0000115;2.82e-16;36!CL:0000213;6.97e-11;58!CL:0000215;6.97e-11;58!CL:0002078;5.45e-10;45!CL:0002188;3.22e-09;5!CL:0000138;5.54e-08;6!CL:0002139;1.27e-07;24!CL:1000746;6.04e-07;7!CL:1000612;6.04e-07;7 | |||
|ontology_enrichment_celltype_v019_2=CL:0005020,3.11e-27,6;CL:0002138,3.11e-27,6;CL:0005022,3.11e-27,6;CL:0002262,4.66e-21,2;CL:1000398,4.66e-21,2;CL:0000115,3.28e-18,36;CL:0002078,1.01e-14,45;CL:0000213,1.39e-11,58;CL:0000215,1.39e-11,58;CL:0002188,3.22e-09,5;CL:0000058,5.54e-08,6;CL:0000138,5.54e-08,6;CL:0002139,1.31e-07,24;CL:1000746,6.04e-07,7;CL:1000612,6.04e-07,7 | |||
|ontology_enrichment_development_v019=CL:0005022;2.72e-27;6 | |||
|ontology_enrichment_disease=DOID:114!7.19e-10!2 | |ontology_enrichment_disease=DOID:114!7.19e-10!2 | ||
|ontology_enrichment_disease_v019=DOID:3371;6.62e-41;1!DOID:4549;6.62e-41;1!DOID:5861;6.62e-41;1!DOID:6496;6.62e-41;1!DOID:201;5.54e-08;6!DOID:0060100;5.54e-08;6 | |||
|ontology_enrichment_disease_v019_2=DOID:3371,6.62e-41,1;DOID:4549,6.62e-41,1;DOID:5861,6.62e-41,1;DOID:6496,6.62e-41,1;DOID:201,5.54e-08,6;DOID:0060100,5.54e-08,6 | |||
|ontology_enrichment_uberon=UBERON:0007023!3.46e-23!115;UBERON:0003103!1.55e-09!69;UBERON:0002465!1.51e-07!10;UBERON:0000477!4.18e-07!286;UBERON:0002106!5.83e-07!3;UBERON:0004854!5.83e-07!3;UBERON:0009034!5.83e-07!3;UBERON:0002095!5.83e-07!3;UBERON:0004782!5.83e-07!3;UBERON:0003281!5.83e-07!3;UBERON:0009664!5.83e-07!3;UBERON:0002296!5.83e-07!3;UBERON:0005602!5.83e-07!3;UBERON:0001179!5.83e-07!3;UBERON:0006293!5.83e-07!3 | |ontology_enrichment_uberon=UBERON:0007023!3.46e-23!115;UBERON:0003103!1.55e-09!69;UBERON:0002465!1.51e-07!10;UBERON:0000477!4.18e-07!286;UBERON:0002106!5.83e-07!3;UBERON:0004854!5.83e-07!3;UBERON:0009034!5.83e-07!3;UBERON:0002095!5.83e-07!3;UBERON:0004782!5.83e-07!3;UBERON:0003281!5.83e-07!3;UBERON:0009664!5.83e-07!3;UBERON:0002296!5.83e-07!3;UBERON:0005602!5.83e-07!3;UBERON:0001179!5.83e-07!3;UBERON:0006293!5.83e-07!3 | ||
|ontology_enrichment_uberon_v019=UBERON:0001281;5.69e-21;2!UBERON:0003497;5.69e-21;2!UBERON:0003909;5.69e-21;2!UBERON:0003835;5.69e-21;2!UBERON:0001473;8.98e-21;8!UBERON:0004536;8.98e-21;8!UBERON:0006558;8.98e-21;8!UBERON:0002465;7.51e-17;10!UBERON:0002418;1.22e-14;3!UBERON:0004755;1.22e-14;3!UBERON:0001280;1.83e-14;3!UBERON:0004647;1.83e-14;3!UBERON:0000353;1.49e-11;15!UBERON:0003513;6.04e-07;7!UBERON:0000074;6.04e-07;7!UBERON:0001229;6.04e-07;7!UBERON:0002405;7.03e-07;27 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001281,4.66e-21,2;UBERON:0003497,4.66e-21,2;UBERON:0003909,4.66e-21,2;UBERON:0003835,4.66e-21,2;UBERON:0001473,9.92e-21,8;UBERON:0004536,9.92e-21,8;UBERON:0006558,9.92e-21,8;UBERON:0002465,8.13e-17,10;UBERON:0002418,1.22e-14,3;UBERON:0004755,1.22e-14,3;UBERON:0001280,1.60e-14,3;UBERON:0004647,1.60e-14,3;UBERON:0005171,1.60e-14,3;UBERON:0000353,1.42e-11,15;UBERON:0000058,2.36e-09,19;UBERON:0002394,6.34e-08,6;UBERON:0003928,6.34e-08,6;UBERON:0003513,5.70e-07,7;UBERON:0010532,6.04e-07,7;UBERON:0000074,6.04e-07,7;UBERON:0001229,6.04e-07,7;UBERON:0001230,6.04e-07,7;UBERON:0003220,6.04e-07,7;UBERON:0005749,6.04e-07,7;UBERON:0004199,6.04e-07,7;UBERON:0004209,6.04e-07,7;UBERON:0004198,6.04e-07,7 | |||
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| ||
|short_description=p@chr12:71029609..71029628,- | |short_description=p@chr12:71029609..71029628,- | ||
}} | }} |
Latest revision as of 12:08, 24 July 2015
Short description: | p@chr12:71029609..71029628, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr12:71029609..71029628, - |
Coexpression cluster: | C38_extraskeletal_rhabdomyosarcoma_adrenal_rectal_mesothelioma_lung_Wilms |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
lymphangioblast | 3.11e-27 | 6 |
endothelial cell of lymphatic vessel | 3.11e-27 | 6 |
vascular lymphangioblast | 3.11e-27 | 6 |
endothelial cell of sinusoid | 4.66e-21 | 2 |
endothelial cell of hepatic sinusoid | 4.66e-21 | 2 |
endothelial cell | 3.28e-18 | 36 |
meso-epithelial cell | 1.01e-14 | 45 |
lining cell | 1.39e-11 | 58 |
barrier cell | 1.39e-11 | 58 |
glomerular endothelial cell | 3.22e-09 | 5 |
chondroblast | 5.54e-08 | 6 |
chondrocyte | 5.54e-08 | 6 |
endothelial cell of vascular tree | 1.31e-07 | 24 |
glomerular cell | 6.04e-07 | 7 |
kidney corpuscule cell | 6.04e-07 | 7 |
Ontology term | p-value | n |
---|---|---|
hepatic sinusoid | 4.66e-21 | 2 |
abdomen blood vessel | 4.66e-21 | 2 |
sinusoid | 4.66e-21 | 2 |
abdominal segment blood vessel | 4.66e-21 | 2 |
lymphatic vessel | 9.92e-21 | 8 |
lymph vasculature | 9.92e-21 | 8 |
lymphatic part of lymphoid system | 9.92e-21 | 8 |
lymphoid system | 8.13e-17 | 10 |
cartilage tissue | 1.22e-14 | 3 |
skeletal tissue | 1.22e-14 | 3 |
liver parenchyma | 1.60e-14 | 3 |
liver lobule | 1.60e-14 | 3 |
hepatic duct | 1.60e-14 | 3 |
parenchyma | 1.42e-11 | 15 |
duct | 2.36e-09 | 19 |
bile duct | 6.34e-08 | 6 |
digestive system duct | 6.34e-08 | 6 |
trunk blood vessel | 5.70e-07 | 7 |
primitive nephron | 6.04e-07 | 7 |
renal glomerulus | 6.04e-07 | 7 |
renal corpuscle | 6.04e-07 | 7 |
glomerular capsule | 6.04e-07 | 7 |
metanephric mesenchyme | 6.04e-07 | 7 |
glomerular tuft | 6.04e-07 | 7 |
S-shaped body | 6.04e-07 | 7 |
renal vesicle | 6.04e-07 | 7 |
comma-shaped body | 6.04e-07 | 7 |
Ontology term | p-value | n |
---|---|---|
chondrosarcoma | 6.62e-41 | 1 |
extraosseous chondrosarcoma | 6.62e-41 | 1 |
myxoid chondrosarcoma | 6.62e-41 | 1 |
extraskeletal myxoid chondrosarcoma | 6.62e-41 | 1 |
connective tissue cancer | 5.54e-08 | 6 |
musculoskeletal system cancer | 5.54e-08 | 6 |