FFCP PHASE1:Hg19::chr19:54676846..54676872,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=147798 | |EntrezGene=147798 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=22998 | |HGNC=22998 | ||
|TSSclassifier=strong | |||
|UniProt=Q7Z404 | |UniProt=Q7Z404 | ||
|association_with_transcript=0bp_to_ENST00000301187,ENST00000476013,ENST00000479750_5end | |association_with_transcript=0bp_to_ENST00000301187,ENST00000476013,ENST00000479750_5end | ||
|cluster_id=chr19:54676846..54676872,- | |||
|coexpression_cluster_id=C3821 | |coexpression_cluster_id=C3821 | ||
|description=CAGE_peak_1_at_TMC4_5end | |description=CAGE_peak_1_at_TMC4_5end | ||
|id=chr19:54676846..54676872,- | |id=chr19:54676846..54676872,- | ||
|ontology_enrichment_celltype=CL:0000066!5.05e-24!254;CL:0002076!1.11e-19!43;CL:0000223!9.44e-15!59;CL:0002368!9.17e-10!13;CL:0002251!5.07e-09!21 | |ontology_enrichment_celltype=CL:0000066!5.05e-24!254;CL:0002076!1.11e-19!43;CL:0000223!9.44e-15!59;CL:0002368!9.17e-10!13;CL:0002251!5.07e-09!21 | ||
|ontology_enrichment_celltype_v019=CL:0002076;9.40e-16;42!CL:0002368;5.22e-11;13!CL:0002251;6.66e-08;20!CL:0002202;2.17e-07;9!CL:0002632;2.17e-07;9 | |||
|ontology_enrichment_celltype_v019_2=CL:0000066,1.42e-23,253;CL:0002076,4.61e-20,42;CL:0000223,1.03e-14,58;CL:0002368,5.27e-11,13;CL:0002251,6.87e-08,20;CL:0002202,2.22e-07,9;CL:0002632,2.22e-07,9 | |||
|ontology_enrichment_development_v019=CL:0000223;1.85e-08;58!UBERON:0006595;1.56e-07;86 | |||
|ontology_enrichment_disease=DOID:305!5.00e-17!106;DOID:0050687!8.70e-11!143;DOID:1749!1.05e-10!14;DOID:299!3.61e-10!25 | |ontology_enrichment_disease=DOID:305!5.00e-17!106;DOID:0050687!8.70e-11!143;DOID:1749!1.05e-10!14;DOID:299!3.61e-10!25 | ||
|ontology_enrichment_disease_v019=DOID:299;7.93e-11;25!DOID:1749;3.60e-09;14 | |||
|ontology_enrichment_disease_v019_2=DOID:305,3.34e-16,106;DOID:299,8.28e-11,25;DOID:0050687,2.11e-10,143;DOID:1749,3.64e-09,14 | |||
|ontology_enrichment_uberon=UBERON:0004119!6.43e-27!169;UBERON:0000925!6.43e-27!169;UBERON:0006595!6.43e-27!169;UBERON:0001007!3.03e-21!155;UBERON:0001555!3.03e-21!155;UBERON:0007026!3.03e-21!155;UBERON:0004921!5.09e-19!129;UBERON:0004185!5.09e-19!129;UBERON:0000464!6.91e-18!104;UBERON:0000466!2.07e-16!126;UBERON:0000077!2.94e-16!130;UBERON:0001004!9.29e-15!72;UBERON:0005911!9.83e-13!82;UBERON:0005177!1.35e-11!107;UBERON:0005153!2.01e-11!37;UBERON:0005178!3.49e-11!34;UBERON:0002224!3.49e-11!34;UBERON:0001041!4.82e-11!98;UBERON:0005181!1.22e-10!35;UBERON:0000065!2.29e-10!53;UBERON:0001008!3.28e-10!45;UBERON:0000161!4.90e-10!35;UBERON:0006554!8.17e-10!44;UBERON:0005157!9.83e-10!51;UBERON:0000062!1.15e-09!511;UBERON:0009569!2.32e-09!113;UBERON:0000915!1.07e-08!52;UBERON:0003064!1.39e-08!37;UBERON:0002553!1.49e-08!70;UBERON:0005156!1.76e-08!59;UBERON:0000990!1.76e-08!59;UBERON:0002048!3.25e-08!22;UBERON:0000117!3.25e-08!22;UBERON:0000171!3.25e-08!22;UBERON:0000170!3.25e-08!22;UBERON:0005597!3.25e-08!22;UBERON:0000118!3.25e-08!22;UBERON:0000468!4.75e-08!659;UBERON:0002530!7.30e-08!59;UBERON:0000058!7.66e-08!26;UBERON:0000166!1.29e-07!21;UBERON:0000922!1.49e-07!612;UBERON:0003101!2.27e-07!22;UBERON:0000079!2.27e-07!22;UBERON:0008947!2.99e-07!38;UBERON:0003258!2.99e-07!38;UBERON:0003104!3.10e-07!238;UBERON:0009142!3.10e-07!238;UBERON:0003133!3.37e-07!48;UBERON:0000481!3.96e-07!347;UBERON:0007196!5.14e-07!14;UBERON:0001558!5.14e-07!14;UBERON:0005409!5.33e-07!35;UBERON:0003135!6.75e-07!11 | |ontology_enrichment_uberon=UBERON:0004119!6.43e-27!169;UBERON:0000925!6.43e-27!169;UBERON:0006595!6.43e-27!169;UBERON:0001007!3.03e-21!155;UBERON:0001555!3.03e-21!155;UBERON:0007026!3.03e-21!155;UBERON:0004921!5.09e-19!129;UBERON:0004185!5.09e-19!129;UBERON:0000464!6.91e-18!104;UBERON:0000466!2.07e-16!126;UBERON:0000077!2.94e-16!130;UBERON:0001004!9.29e-15!72;UBERON:0005911!9.83e-13!82;UBERON:0005177!1.35e-11!107;UBERON:0005153!2.01e-11!37;UBERON:0005178!3.49e-11!34;UBERON:0002224!3.49e-11!34;UBERON:0001041!4.82e-11!98;UBERON:0005181!1.22e-10!35;UBERON:0000065!2.29e-10!53;UBERON:0001008!3.28e-10!45;UBERON:0000161!4.90e-10!35;UBERON:0006554!8.17e-10!44;UBERON:0005157!9.83e-10!51;UBERON:0000062!1.15e-09!511;UBERON:0009569!2.32e-09!113;UBERON:0000915!1.07e-08!52;UBERON:0003064!1.39e-08!37;UBERON:0002553!1.49e-08!70;UBERON:0005156!1.76e-08!59;UBERON:0000990!1.76e-08!59;UBERON:0002048!3.25e-08!22;UBERON:0000117!3.25e-08!22;UBERON:0000171!3.25e-08!22;UBERON:0000170!3.25e-08!22;UBERON:0005597!3.25e-08!22;UBERON:0000118!3.25e-08!22;UBERON:0000468!4.75e-08!659;UBERON:0002530!7.30e-08!59;UBERON:0000058!7.66e-08!26;UBERON:0000166!1.29e-07!21;UBERON:0000922!1.49e-07!612;UBERON:0003101!2.27e-07!22;UBERON:0000079!2.27e-07!22;UBERON:0008947!2.99e-07!38;UBERON:0003258!2.99e-07!38;UBERON:0003104!3.10e-07!238;UBERON:0009142!3.10e-07!238;UBERON:0003133!3.37e-07!48;UBERON:0000481!3.96e-07!347;UBERON:0007196!5.14e-07!14;UBERON:0001558!5.14e-07!14;UBERON:0005409!5.33e-07!35;UBERON:0003135!6.75e-07!11 | ||
|ontology_enrichment_uberon_v019=UBERON:0004921;2.36e-12;33!UBERON:0005178;5.84e-10;34!UBERON:0002224;5.84e-10;34!UBERON:0005409;1.50e-09;22!UBERON:0005181;4.00e-09;35!UBERON:0002048;1.42e-08;22!UBERON:0000117;1.42e-08;22!UBERON:0000171;1.42e-08;22!UBERON:0000170;1.42e-08;22!UBERON:0005911;2.00e-08;36!UBERON:0000160;2.40e-08;17!UBERON:0001555;5.99e-08;54!UBERON:0004807;7.58e-08;22!UBERON:0000365;4.55e-07;5!UBERON:0003101;9.18e-07;22!UBERON:0000079;9.18e-07;22 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004119,2.34e-26,160;UBERON:0000925,2.34e-26,160;UBERON:0006595,2.34e-26,160;UBERON:0001007,4.86e-21,145;UBERON:0001555,4.86e-21,145;UBERON:0007026,4.86e-21,145;UBERON:0004921,4.70e-19,118;UBERON:0005911,9.00e-14,82;UBERON:0001004,2.56e-13,74;UBERON:0005153,1.21e-11,37;UBERON:0005178,3.10e-11,34;UBERON:0002224,3.10e-11,34;UBERON:0005181,1.02e-10,35;UBERON:0000065,1.12e-10,54;UBERON:0005177,1.41e-10,101;UBERON:0001041,1.90e-10,87;UBERON:0005157,1.47e-09,47;UBERON:0000915,2.87e-09,52;UBERON:0001008,5.16e-09,48;UBERON:0006554,1.33e-08,47;UBERON:0002048,1.45e-08,22;UBERON:0000117,1.45e-08,22;UBERON:0000171,1.45e-08,22;UBERON:0000170,1.45e-08,22;UBERON:0005597,1.45e-08,22;UBERON:0000118,1.45e-08,22;UBERON:0009569,1.67e-08,112;UBERON:0000160,2.49e-08,17;UBERON:0000161,4.99e-08,36;UBERON:0005156,6.06e-08,59;UBERON:0000990,6.06e-08,59;UBERON:0005409,6.61e-08,25;UBERON:0008947,2.48e-07,38;UBERON:0003258,2.48e-07,38;UBERON:0000365,4.44e-07,5;UBERON:0004807,6.35e-07,28;UBERON:0003133,6.91e-07,48;UBERON:0003101,9.43e-07,22;UBERON:0000079,9.43e-07,22 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0.261185628199839,10.0750913965619,32.7966548947041,1.09220686065086,1.58260186937072,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.77408061658038,13.7913183671839,19.8795906393645,31.7988448743437,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,5.44859552370032,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,15.8484681352232,36.4295288292542,12.6066710546706,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,47.9703457356788,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,5.7978255948989,7.9096374971342,8.89094245705912,4.75697453905422,4.24095258628753,3.95059405756363,2.90250954043037,4.03713361401005,1.45990943630332,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.47008711385542,0,0,0,0,34.0677974764425,0,11.7432805387229,7.86812272803337,1.3068766413512,31.1097175732659,0,0,0,0,0,0,0,0,37.1396067040859,38.6318772942693,0,0,0,2.81201501960331,10.2469098201304,12.3344334600876,10.5679056789361,14.8223308642121,4.98397482914775,0,0,0.621984346622316,0.144119953416961,0.50496973370552,0,0,0,1.71072446022705,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.500170521059677,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.66435439510497,0.30239029332968,0,0,0,0,0,0,0,0,0,0,0,0,23.9301710191412,15.0379852727464,49.2633290807045,0,0,0,11.2799903226853,8.70273309279887,3.13739907670742,5.84556898613043,6.43864936246542,0,0,0,0,0.270946437543853,0.501689773854853,7.13653564526107,16.6215201785745,0.895499018888713,0,0,0,0,0,10.3041011647722,0,0,14.9309039879005,12.3511446746939,0,0,0,0,0,0,0,0,0,30.247139511059,18.8346266017804,21.9493865490685,26.1998652415874,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.655894752046633,0,0,0,0,0,0,0,0,0,0,0,13.4710957815717,21.4496728171452,38.1118447014629,11.6738312963206,59.4097414286297,69.0733050237265,59.8630707274512,50.5391480455311,0,0,0,0,0,0,0,0,0,0,3.43056302373444,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,40.048075647359,0,0.121360521749513,0,0,21.2482591416544,30.5873621257618,27.3373024868317,0,0,0,0,3.80025734630388,6.97367958878744,13.2616279454951,31.4915934817845,0,0,0,15.0978829927509,41.3538913500657,0,16.7693789582787,0,0,0,0,0,25.5219205863529,32.9724199985658,3.62499787717397,8.07933482827048,23.1370821766417,9.69189495248539,0,0,0,0,0,0,0,0,0,0,29.4184100427853,9.77268282998223,0,12.4504508369552,6.91133861955245,14.2328057217831,29.3481066953366,12.2740775158495,51.1713384977889,0,0,0,0,0,0,0,0,2.3209787098083,26.1172493054636,6.36088821452734,0,43.7915249674542,76.9580811179051,56.2147733338935,0,0,0,0.269604531922708,0,0,0,24.2624127475791,0,78.9168805698781,45.9764720984923,0,0,0.751617097072463,0,0.664653872707185,0,0,0,40.1299459902008,0,21.6949672918914,22.3422666104781,0.870592065804026,39.3135003544568,0,0,0,0,7.95309935205039,0,3.16373037092745,0,0,0,24.2483714591156,27.1738400652699,59.33993253754,0,29.970806768054,0.114536596165916,0,0,0,33.468552915585,0,0,0,0,0,0,0,0,0,0,0,0.717873024576814,6.58940701646671,0.429226048136571,0,0,0,16.3094329338435,0,0.0824158583811665,0,0,0,0,0,2.73280352390533,2.61324929534744,2.49264202817511,0,0.77380195455795,0.0607495566580247,3.35434687599266,27.6608032620186,22.2407453692392,0.105600336519406,0,11.3229966418473,0,0,0,0,0,0,0,0,0,0,1.46552233678082,0,0.646414781807753,0,0,121.228183838468,25.7357664288144,33.1701083760295,31.8964072617341,0,0,0,14.6818489287142,0,0,0,0,34.2377929825511,0,0.122026264901963,0,0.573409195690071,0,0.124192805882767,0,0,0,0,0,0,0.724605143054126,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.07439023612359,0,0,0,0.244736704506468,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,14.5805365117453,0,0,0,0,0,27.1366244975722,19.9064723210551,0,0,0,0,0,0,0,0,0,0,20.0142687071367,0,0,0,0,0,0,0,0,0,0,31.2109744833261,0.943757786781923,10.8222873127791,18.4841065840541,0,0,0,9.92776334210196,0,51.5799247413841,5.76194727859129,0,70.8230652979647,0,0,0,0,0,82.2386650285773,8.9318012110073,0,24.0193363962439,2.14280734351315,0.336283722218824,19.4228993355722,26.8641385794531,15.4342124082992,0,0,0,0,0.236387681767936,9.12097495514967,23.1554623909016,0,42.6013688236959,20.0894918512089,0,0,0.428859265059938,0,0.813689977576877,0,0,0.207216164163037,0.3414369541879,1.38251932362818,93.7895642228205,0,0,121.512083404797,61.8588545068935,0,0,67.4488253740688,22.6727039651211,53.5219690672163,0,0,0,2.91426595835484,15.9078835154232,24.4709453448483,0,11.0687160398181,0,21.738649473601,108.198169667338,48.3016628713746,39.9769701907294,2.20633489578515,44.0715143080041,0,0,0.4226557275834,0,0,0,0,44.9955925286257,57.5218640896578,14.2027219039828,30.6741283063537,58.7173482757812,0,0,0,0,47.0833888058706,0,0,0,0,0,0,2.65170957329153,7.21486994217013,7.35159196278759,2.005660314339,2.8795905322931,0.535928260312357,0,0,18.7645904072863,19.7593478114904,2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| ||
|short_description=p1@TMC4 | |short_description=p1@TMC4 | ||
}} | }} |
Latest revision as of 21:15, 19 September 2015
Short description: | p1@TMC4 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_TMC4_5end |
Coexpression cluster: | C3821_lung_seminal_small_salivary_parotid_ductus_colon |
Association with transcript: | 0bp_to_ENST00000301187, ENST00000476013, ENST00000479750_5end |
EntrezGene: | TMC4 |
HGNC: | 22998 |
UniProt: | Q7Z404 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell | 1.42e-23 | 253 |
endo-epithelial cell | 4.61e-20 | 42 |
endodermal cell | 1.03e-14 | 58 |
respiratory epithelial cell | 5.27e-11 | 13 |
epithelial cell of alimentary canal | 6.87e-08 | 20 |
epithelial cell of tracheobronchial tree | 2.22e-07 | 9 |
epithelial cell of lower respiratory tract | 2.22e-07 | 9 |
Ontology term | p-value | n |
---|---|---|
carcinoma | 3.34e-16 | 106 |
adenocarcinoma | 8.28e-11 | 25 |
cell type cancer | 2.11e-10 | 143 |
squamous cell carcinoma | 3.64e-09 | 14 |