FFCP PHASE1:Hg19::chr19:13951371..13951384,-: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr19:13951371..13951384,-
|short_description=p3@LOC100131831
|description=CAGE_peak_3_at_LOC100131831_5end
|association_with_transcript=-371bp_to_AK129685_5end...") |
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(11 intermediate revisions by the same user not shown) | |||
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=100131831 | |EntrezGene=100131831 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC= | |HGNC= | ||
|TSSclassifier=strong | |||
|UniProt=Q6ZPA2 | |UniProt=Q6ZPA2 | ||
|association_with_transcript=-371bp_to_AK129685_5end | |||
|cluster_id=chr19:13951371..13951384,- | |||
|coexpression_cluster_id=C6 | |||
|description=CAGE_peak_3_at_LOC100131831_5end | |||
|id=chr19:13951371..13951384,- | |||
|ontology_enrichment_celltype=CL:0000860!7.00e-45!45;CL:0002057!5.64e-43!42;CL:0000766!2.15e-37!76;CL:0000557!1.98e-35!71;CL:0002009!7.34e-35!65;CL:0000839!2.25e-34!70;CL:0002194!5.87e-33!63;CL:0000576!5.87e-33!63;CL:0000040!5.87e-33!63;CL:0000559!5.87e-33!63;CL:0000738!1.24e-28!140;CL:0002031!5.73e-26!124;CL:0002087!8.55e-25!119;CL:0000763!1.41e-24!112;CL:0000049!1.41e-24!112;CL:0000037!2.79e-22!172;CL:0000566!2.79e-22!172;CL:0002032!2.40e-20!165;CL:0000837!2.40e-20!165;CL:0000988!8.77e-20!182;CL:0000134!2.94e-15!358;CL:0000219!1.32e-14!390;CL:0002320!2.21e-14!365;CL:0002393!5.21e-12!9;CL:0002397!5.21e-12!9;CL:0000048!3.83e-11!430;CL:0000723!5.53e-11!436;CL:0000063!1.62e-10!578;CL:0000034!3.08e-10!444;CL:0002371!9.33e-08!591;CL:0000548!1.14e-07!679;CL:0000004!1.14e-07!679;CL:0000255!1.14e-07!679;CL:0000012!1.85e-07!682;CL:0000003!5.45e-07!722 | |||
|ontology_enrichment_celltype_v019=CL:0000860;1.70e-38;33!CL:0002057;1.70e-38;33!CL:0000576;1.14e-30;48!CL:0000473;1.03e-26;39!CL:0000234;1.03e-26;39!CL:0000766;1.87e-22;69!CL:0000623;3.23e-22;3!CL:0002393;4.15e-20;6!CL:0002397;4.15e-20;6!CL:0002087;8.80e-13;104 | |||
|ontology_enrichment_celltype_v019_2=CL:0000860,4.43e-58,42;CL:0002057,4.43e-58,42;CL:0000473,2.19e-50,48;CL:0000234,2.19e-50,48;CL:0002194,1.32e-39,59;CL:0000576,1.32e-39,59;CL:0000040,1.32e-39,59;CL:0000559,1.32e-39,59;CL:0002009,3.25e-38,61;CL:0000766,1.42e-35,72;CL:0000839,4.25e-35,66;CL:0000557,1.57e-34,67;CL:0002087,1.68e-31,115;CL:0000738,1.64e-28,136;CL:0002031,2.71e-27,120;CL:0000763,1.36e-22,108;CL:0000049,1.36e-22,108;CL:0000037,2.67e-22,168;CL:0000623,4.34e-22,3;CL:0000825,4.34e-22,3;CL:0002032,2.54e-21,161;CL:0000837,2.54e-21,161;CL:0000988,5.92e-21,177;CL:0002393,2.27e-20,9;CL:0002397,2.27e-20,9;CL:0000134,2.92e-09,354;CL:0002320,5.42e-09,361;CL:0000219,4.83e-08,386;CL:0000048,7.06e-07,427 | |||
|ontology_enrichment_development_v019=CL:0002057;3.15e-42;42 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002371!3.41e-32!80;UBERON:0002390!4.34e-30!102;UBERON:0003061!4.34e-30!102;UBERON:0001474!1.11e-28!86;UBERON:0002193!1.28e-25!112;UBERON:0004765!9.02e-23!101;UBERON:0001434!9.02e-23!101;UBERON:0002405!7.73e-21!115;UBERON:0002384!1.14e-13!375;UBERON:0003081!2.43e-12!216;UBERON:0002204!9.38e-12!167 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002371,4.46e-30,76;UBERON:0001474,1.21e-27,82;UBERON:0002390,2.65e-25,98;UBERON:0003061,2.65e-25,98;UBERON:0004765,6.73e-25,90;UBERON:0002405,5.46e-24,93;UBERON:0002193,1.23e-22,108;UBERON:0001434,4.46e-22,100;UBERON:0002204,8.02e-12,167;UBERON:0003081,2.54e-10,203;UBERON:0002384,1.26e-08,371 | |||
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| ||
|short_description=p3@LOC100131831 | |||
}} | }} |
Latest revision as of 02:02, 16 September 2015
Short description: | p3@LOC100131831 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_LOC100131831_5end |
Coexpression cluster: | C6_CD14_Eosinophils_Basophils_Peripheral_CD34_Natural_immature |
Association with transcript: | -371bp_to_AK129685_5end |
EntrezGene: | LOC100131831 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
classical monocyte | 4.43e-58 | 42 |
CD14-positive, CD16-negative classical monocyte | 4.43e-58 | 42 |
defensive cell | 2.19e-50 | 48 |
phagocyte | 2.19e-50 | 48 |
monopoietic cell | 1.32e-39 | 59 |
monocyte | 1.32e-39 | 59 |
monoblast | 1.32e-39 | 59 |
promonocyte | 1.32e-39 | 59 |
macrophage dendritic cell progenitor | 3.25e-38 | 61 |
myeloid leukocyte | 1.42e-35 | 72 |
myeloid lineage restricted progenitor cell | 4.25e-35 | 66 |
granulocyte monocyte progenitor cell | 1.57e-34 | 67 |
nongranular leukocyte | 1.68e-31 | 115 |
leukocyte | 1.64e-28 | 136 |
hematopoietic lineage restricted progenitor cell | 2.71e-27 | 120 |
myeloid cell | 1.36e-22 | 108 |
common myeloid progenitor | 1.36e-22 | 108 |
hematopoietic stem cell | 2.67e-22 | 168 |
natural killer cell | 4.34e-22 | 3 |
pro-NK cell | 4.34e-22 | 3 |
hematopoietic oligopotent progenitor cell | 2.54e-21 | 161 |
hematopoietic multipotent progenitor cell | 2.54e-21 | 161 |
hematopoietic cell | 5.92e-21 | 177 |
intermediate monocyte | 2.27e-20 | 9 |
CD14-positive, CD16-positive monocyte | 2.27e-20 | 9 |
mesenchymal cell | 2.92e-09 | 354 |
connective tissue cell | 5.42e-09 | 361 |
motile cell | 4.83e-08 | 386 |
multi fate stem cell | 7.06e-07 | 427 |
Ontology term | p-value | n |
---|---|---|
bone marrow | 4.46e-30 | 76 |
bone element | 1.21e-27 | 82 |
hematopoietic system | 2.65e-25 | 98 |
blood island | 2.65e-25 | 98 |
skeletal element | 6.73e-25 | 90 |
immune system | 5.46e-24 | 93 |
hemolymphoid system | 1.23e-22 | 108 |
skeletal system | 4.46e-22 | 100 |
musculoskeletal system | 8.02e-12 | 167 |
lateral plate mesoderm | 2.54e-10 | 203 |
connective tissue | 1.26e-08 | 371 |